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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Assembly___8cpp_source.html below:

NCBI C++ ToolKit: src/objects/docsum/Assembly_.cpp Source File

m_AssemblySource.erase();

ResetAssemblySource();

->SetRandomOrder(

);

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

: m_DbSnpBuild(0), m_Current(0), m_Reference(0)

(

, eSnpStat_attlist_mapWeight_unmapped);

(

, eSnpStat_attlist_mapWeight_unique_in_contig);

(

, eSnpStat_attlist_mapWeight_two_hits_in_contig);

(

, eSnpStat_attlist_mapWeight_less_10_hits);

(

, eSnpStat_attlist_mapWeight_multiple_hits);

ResetPlacedContigCount();

ResetUnplacedContigCount();

->SetRandomOrder(

);

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

: m_MapWeight((

)(0)), m_ChromCount(0), m_PlacedContigCount(0), m_UnplacedContigCount(0), m_SeqlocCount(0), m_HapCount(0)

(*m_Attlist).Reset();

->RandomOrder();

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

(*m_Attlist).Reset();

(*m_SnpStat).Reset();

->RandomOrder();

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

User-defined methods of the data storage class.

BEGIN_NAMED_BASE_CLASS_INFO("Assembly", CAssembly)

BEGIN_NAMED_ENUM_IN_INFO("", CAssembly_Base::C_SnpStat::C_Attlist::, ESnpStat_attlist_mapWeight, false)

BEGIN_NAMED_CLASS_INFO("", CAssembly_Base::C_Attlist)

User-defined methods of the data storage class.

#define MEMBER_PTR(MemberName)

#define SET_ENUM_INTERNAL_NAME(OwnerName, MemberName)

#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

#define ADD_NAMED_NULL_MEMBER(MemberAlias, TypeMacro, TypeMacroArgs)

#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)

#define SET_ENUM_MODULE(ModuleName)

#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)

#define SET_CLASS_MODULE(ModuleName)

#define ADD_NAMED_ENUM_MEMBER(MemberAlias, MemberName, EnumName)

#define ADD_ENUM_VALUE(EnumValueName, EnumValueValue)

#define SET_INTERNAL_NAME(OwnerName, MemberName)

bool IsAllocatedInPool(void) const THROWS_NONE

Check if object is allocated in memory pool (not system heap)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void ResetComponent(void)

Reset Component data member.

void ResetSnpStat(void)

Reset SnpStat data member.

void Reset(void)

Reset the whole object.

TAttlist & SetAttlist(void)

Assign a value to Attlist data member.

ESnpStat_attlist_mapWeight

summary measure of placement precision in the assembly

void ResetSnpStat(void)

Reset SnpStat data member.

void ResetAssemblySource(void)

Reset AssemblySource data member.

void Reset(void)

Reset the whole object.

TSnpStat & SetSnpStat(void)

Assign a value to SnpStat data member.

void ResetAttlist(void)

Reset Attlist data member.

void ResetGenomeBuild(void)

Reset GenomeBuild data member.

void Reset(void)

Reset the whole object.

CRef< TSnpStat > m_SnpStat

virtual void Reset(void)

Reset the whole object.

TAttlist & SetAttlist(void)

Assign a value to Attlist data member.

CRef< TAttlist > m_Attlist

virtual ~CAssembly_Base(void)

list< CRef< CComponent > > m_Component

void ResetGroupLabel(void)

Reset GroupLabel data member.

void ResetAttlist(void)

Reset Attlist data member.

const GenericPointer< typename T::ValueType > T2 value

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