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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Align__def___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seq/Align_def_.hpp Source File

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41 #ifndef OBJECTS_SEQ_ALIGN_DEF_BASE_HPP 42 #define OBJECTS_SEQ_ALIGN_DEF_BASE_HPP 52 #ifndef BEGIN_objects_SCOPE 53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 54 # define END_objects_SCOPE END_SCOPE(objects) 92

eAlign_type_blocks = 3,

93

eAlign_type_other = 255

101  typedef

list< CRef< CSeq_id > >

TIds

;

121  bool

IsSetAlign_type(

void

)

const

;

128  bool

CanGetAlign_type(

void

)

const

;

131  void

ResetAlign_type(

void

);

159  bool

IsSetIds(

void

)

const

;

166  bool

CanGetIds(

void

)

const

;

169  void

ResetIds(

void

);

181  TIds

& SetIds(

void

);

184  virtual void

Reset(

void

);

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TAlign_type & SetAlign_type(void)

Assign a value to Align_type data member.

EAlign_type

class of align Seq-annot

TIds & SetIds(void)

Assign a value to Ids data member.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

list< CRef< CSeq_id > > m_Ids

list< CRef< CSeq_id > > TIds

bool IsSetAlign_type(void) const

Check if a value has been assigned to Align_type data member.

CAlign_def_Base & operator=(const CAlign_def_Base &)

void ResetAlign_type(void)

Reset Align_type data member.

bool CanGetAlign_type(void) const

Check if it is safe to call GetAlign_type method.

DECLARE_INTERNAL_TYPE_INFO()

TAlign_type GetAlign_type(void) const

Get the Align_type member data.

CAlign_def_Base(const CAlign_def_Base &)

bool CanGetIds(void) const

Check if it is safe to call GetIds method.

const TIds & GetIds(void) const

Get the Ids member data.

bool IsSetIds(void) const

used for the one ref seqid for now Check if a value has been assigned to Ids data member.

const GenericPointer< typename T::ValueType > T2 value

static bool GetIds(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

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