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NCBI C++ ToolKit: src/app/agp_validate/AgpFastaComparator.cpp File Reference

#include <ncbi_pch.hpp>
#include "AgpFastaComparator.hpp"
#include <algorithm>
#include <sstream>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbiexec.hpp>
#include <util/checksum.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objmgr/scope.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seq/Delta_ext.hpp>
#include <objects/seq/Delta_seq.hpp>
#include <objects/seq/Seq_ext.hpp>
#include <objects/seq/Seq_literal.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objmgr/seq_entry_handle.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/util/sequence.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objtools/data_loaders/lds2/lds2_dataloader.hpp>
#include <objtools/lds2/lds2.hpp>
#include <objtools/readers/agp_seq_entry.hpp>
#include <objtools/readers/agp_util.hpp>
#include <objtools/readers/fasta.hpp>
#include <objtools/readers/reader_exception.hpp>

Include dependency graph for AgpFastaComparator.cpp:

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Macros #define  COMP_LOG(msg)   Functions   USING_SCOPE (objects)   Variables   USING_NCBI_SCOPE   Macro Definition Documentation ◆ COMP_LOG #define COMP_LOG (   msg ) Value:

do { \

if( x_IsLogFileOpen() ) { \

*m_pLoadLogFile <<

msg

<< endl; \

} \

} while(false)

msg

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

Definition: sljitNativeS390X.c:658

Definition at line 74 of file AgpFastaComparator.cpp.

Function Documentation ◆ USING_SCOPE() USING_SCOPE ( objects  ) Variable Documentation ◆ USING_NCBI_SCOPE USING_NCBI_SCOPE

Definition at line 82 of file AgpFastaComparator.cpp.

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