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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/5col__line__reader_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/import/ftable/5col_line_reader.cpp Source File

50

mLastTypeSeen(eLineTypeNone),

64  "Data line out of order"

);

71  string

nextLine =

""

;

72  while

(!lineReader.

AtEOF

()) {

73

nextLine = *(++lineReader);

123  throw

errorDataLineOutOfOrder;

140  throw

errorDataLineOutOfOrder;

150  throw

errorDataLineOutOfOrder;

163  const string

& line_,

175  throw

errorBadDataLine;

183  if

(

columns

[0] ==

">Feature"

) {

194  const

vector<string>&

columns

)

202  throw

errorBadDataLine;

209  if

(

columns

[0] ==

">Feature"

) {

221  throw

errorBadDataLine;

228  const

vector<string>& lines,

234  "Invalid interval boundaries"

,

243

vector<pair<int, int>> vecIntervals;

244

vector<pair<bool, bool>> vecPartials;

245

vector<pair<string, string>> vecAttributes;

256  int

intervalFrom(0), intervalTo(0);

257  bool

partialFrom(

false

), partialTo(

false

);

260  if

(fromStr[0] ==

'<'

|| fromStr[0] ==

'>'

) {

261

fromStr = fromStr.substr(1, string::npos);

265  if

(toStr[0] ==

'<'

|| toStr[0] ==

'>'

) {

266

toStr = toStr.substr(1, string::npos);

274  throw

errorBadIntervalBoundaries;

276

vecIntervals.push_back(pair<int, int>(intervalFrom, intervalTo));

277

vecPartials.push_back(pair<bool, bool>(partialFrom, partialTo));

279  for

(

;

i

< lines.size(); ++

i

) {

282

vecAttributes.push_back(pair<string, string>(

columns

[3],

columns

[4]));

286  for

(

auto

interval: vecIntervals) {

291

record.

Initialize

(seqId, featType, vecIntervals, vecPartials, vecAttributes);

void Initialize(const std::string &, const std::string &, const std::vector< std::pair< int, int >> &, const std::vector< std::pair< bool, bool >> &, const std::vector< std::pair< std::string, std::string >> &)

@ eLineTypeIntervalAndType

C5ColLineReader(CImportMessageHandler &)

std::string mCurrentSeqId

virtual bool GetNextRecord(CStreamLineReader &, CFeatImportData &) override

ELineType xLineTypeOf(const std::vector< std::string > &)

std::vector< std::string > mCollectedLines

void xSplitLine(const std::string &, std::vector< std::string > &)

void xInitializeRecord(const std::vector< std::string > &, CFeatImportData &) override

virtual void xReportProgress()

virtual bool xIgnoreLine(const string &) const

CImportMessageHandler & mErrorReporter

unsigned int LineCount() const

unsigned int mRecordCount

void SetLineNumber(unsigned int lineNumber)

virtual void ReportError(const CImportError &)

Simple implementation of ILineReader for i(o)streams.

static const column_t columns[]

bool AtEOF(void) const

Indicates (negatively) whether there is any more input.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool SplitInTwo(const CTempString str, const CTempString delim, string &str1, string &str2, TSplitFlags flags=0)

Split a string into two pieces using the specified delimiters.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

@ fAllowTrailingSymbols

Ignore trailing non-numerics characters.

@ fAllowLeadingSpaces

Ignore leading whitespace characters in converted string.

@ eTrunc_End

Truncate trailing whitespace only.

constexpr bool empty(list< Ts... >) noexcept

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

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