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NCBI C++ ToolKit: src/objtools/import/ftable/5col_import_data.cpp Source File

& featType,

vector<pair<int, int>>& vecIntervals,

vector<pair<bool, bool>>& vecPartials,

vector<pair<string, string>>& vecAttributes)

(

=0;

< vecIntervals.size(); ++

) {

intervalFrom = vecIntervals[

].first;

intervalTo = vecIntervals[

].second;

partialFrom = vecPartials[

].first;

partialTo = vecPartials[

].second;

(intervalFrom > intervalTo) {

(intervalFrom, intervalTo);

(partialFrom, partialTo);

addition.

().Assign(

(*pId, intervalFrom, intervalTo, intervalStrand));

vector<string> vecAttrs;

vecAttrs.push_back(pQual->GetQual() +

+ pQual->GetVal());

vector<string> vecLoc;

locationStr +=

;

<<

;

<<

<< typeStr <<

;

<<

<< locationStr <<

;

<<

<<

(vecAttrs,

) <<

;

& type_)

);

vector<string> recognizedTypes {

,

,

,

,

,

(find(recognizedTypes.begin(), recognizedTypes.end(),

) ==

recognizedTypes.end()) {

errorBadFeatureType;

(

==

) {

(

==

) {

(

==

) {

(

==

) {

(

==

||

==

) {

@ eExtreme_Positional

numerical value

C5ColImportData(const CIdResolver &, CImportMessageHandler &)

CRef< CSeq_feat > mpFeature

void Initialize(const std::string &, const std::string &, const std::vector< std::pair< int, int >> &, const std::vector< std::pair< bool, bool >> &, const std::vector< std::pair< std::string, std::string >> &)

virtual void Serialize(CNcbiOstream &) override

void xFeatureSetType(const std::string &)

const CIdResolver & mIdResolver

void AmendMessage(const std::string &amend)

ESubtype GetSubtype(void) const

static CTempString SubtypeValueToName(ESubtype eSubtype)

Turns a ESubtype into its string value which is NOT necessarily related to the identifier of the enum...

namespace ncbi::objects::

void AddQualifier(const string &qual_name, const string &qual_val)

Add a qualifier to this feature.

std::ofstream out("events_result.xml")

main entry point for tests

unsigned int TSeqPos

Type for sequence locations and lengths.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

void Add(const CSeq_loc &other)

Simple adding of seq-locs.

TSeqPos GetStop(ESeqLocExtremes ext) const

void Reset(void)

Reset reference object.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static string & ToLower(string &str)

Convert string to lower case – string& version.

void SetLocation(TLocation &value)

Assign a value to Location data member.

const TQual & GetQual(void) const

Get the Qual member data.

const TLocation & GetLocation(void) const

Get the Location member data.

const TData & GetData(void) const

Get the Data member data.

void SetData(TData &value)

Assign a value to Data data member.

ENa_strand

strand of nucleic acid

bool IsNull(void) const

Check if variant Null is selected.

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

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