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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/5col__export__job_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence/5col_export_job.cpp Source File

wxString& fileName)

:

(

), m_Params(params), m_SeqLoc(seqLoc), m_FileName(fileName)

err_msg =

;

err_msg =

;

(err_msg.empty()) {

USING_SCOPE(ncbi::objects)

C5ColExportJob(const C5ColExportParams &params, SConstScopedObject seqLoc, const wxString &fileName)

SConstScopedObject m_SeqLoc

C5ColExportParams m_Params

virtual EJobState Run()

Function that does all the useful work, called by the Engine.

wxString GetFeatureDepth() const

bool GetExactFlevel() const

CAppJobError Default implementation for IAppJobError - encapsulates a text error message.

CAppJob - default implementation of IAppJob that could be used as a base class.

CFlatFileConfig & SetShowContigFeatures(bool val=true)

CFlatFileConfig & SetShowContigSources(bool val=true)

void SetFormatFTable(void)

void Generate(const CSeq_entry_Handle &entry, CFlatItemOStream &item_os, const multiout &={})

SAnnotSelector & SetAnnotSelector(void)

static unsigned char depth[2 *(256+1+29)+1]

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

const string & GetMsg(void) const

Get message string.

void Info(CExceptionArgs_Base &args)

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

CRef< CAppJobError > m_Error

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

CRef< objects::CScope > scope

string m_Descr

mutex to sync our internals

EJobState

Job states (describe FSM)

CConstRef< CObject > object

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

SAnnotSelector & SetExactDepth(bool value=true)

SetExactDepth() specifies that annotations will be searched on the segment level specified by SetReso...

SAnnotSelector & SetResolveDepth(int depth)

SetResolveDepth sets the limit of subsegment resolution in searching annotations.

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

TObjectType & GetObject(void)

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

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