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Bioconductor - ABarray (development version)

ABarray

This is the development version of ABarray; for the stable release version, see ABarray.

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Bioconductor version: Development (3.22)

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>

Citation (from within R, enter citation("ABarray")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ABarray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABarray")
ABarray gene expression PDF ABarray gene expression GUI interface PDF Reference Manual PDF Details biocViews Microarray, OneChannel, Preprocessing, Software Version 1.77.0 In Bioconductor since BioC 1.9 (R-2.4) (19 years) License GPL Depends Imports Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils System Requirements URL See More Suggests limma, LPE Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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