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Showing content from http://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/ExperimentHub.html below:

Bioconductor - ExperimentHub (development version)

ExperimentHub

This is the development version of ExperimentHub; for the stable release version, see ExperimentHub.

Client to access ExperimentHub resources

Bioconductor version: Development (3.22)

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ExperimentHub")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExperimentHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExperimentHub")
ExperimentHub: Access the ExperimentHub Web Service HTML R Script Reference Manual PDF NEWS Text Details biocViews DataImport, GUI, Infrastructure, Software, ThirdPartyClient Version 2.99.5 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License Artistic-2.0 Depends methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 3.99.3), BiocFileCache(>= 2.99.3) Imports utils, S4Vectors, BiocManager, rappdirs System Requirements URL Bug Reports https://github.com/Bioconductor/ExperimentHub/issues See More Suggests knitr, BiocStyle, rmarkdown, HubPub, GenomicAlignments Linking To Enhances ExperimentHubData Depends On Me adductomicsR, CoSIA, iSEEhub, LRcell, octad, SeqSQC, BeadSorted.Saliva.EPIC, biscuiteerData, bodymapRat, CellMapperData, clustifyrdatahub, CoSIAdata, crisprScoreData, curatedAdipoChIP, CytoMethIC, DMRcatedata, eoPredData, EpiMix.data, ewceData, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HDCytoData, HiContactsData, HighlyReplicatedRNASeq, HumanAffyData, mcsurvdata, MetaGxBreast, multiWGCNAdata, muscData, muSpaData, NanoporeRNASeq, NestLink, nullrangesData, ObMiTi, octad.db, RNAmodR.Data, scMultiome, scpdata, sesameData, SimBenchData, SpatialDatasets, spatialDmelxsim, STexampleData, tartare, TENxVisiumData, TENxXeniumData, VectraPolarisData, WeberDivechaLCdata Imports Me BiocHubsShiny, BloodGen3Module, CBNplot, coMethDMR, CTdata, DeconvoBuddies, DMRcate, EpiMix, epimutacions, EpipwR, epiregulon, ExperimentHubData, GSEABenchmarkeR, hpar, m6Aboost, MACSr, MatrixQCvis, methodical, MethReg, methylclock, Moonlight2R, MsDataHub, orthos, shinyDSP, signatureSearch, spatialFDA, TENET, adductData, BioImageDbs, celldex, cfToolsData, chipseqDBData, CLLmethylation, curatedMetagenomicData, curatedPCaData, curatedTBData, curatedTCGAData, depmap, DropletTestFiles, DuoClustering2018, easierData, emtdata, EpipwR.data, FieldEffectCrc, gDNAinRNAseqData, GenomicDistributionsData, HarmonizedTCGAData, HCAData, HCATonsilData, HMP16SData, HMP2Data, homosapienDEE2CellScore, humanHippocampus2024, imcdatasets, JohnsonKinaseData, LRcellTypeMarkers, marinerData, MerfishData, methylclockData, MethylSeqData, microbiomeDataSets, MouseAgingData, MouseGastrulationData, MouseThymusAgeing, msigdb, NxtIRFdata, orthosData, PhyloProfileData, preciseTADhub, ProteinGymR, raerdata, scaeData, scRNAseq, SFEData, signatureSearchData, SingleCellMultiModal, SingleMoleculeFootprintingData, spatialLIBD, TabulaMurisData, TabulaMurisSenisData, TENET.ExperimentHub, TENxBrainData, TENxBUSData, TENxPBMCData, tuberculosis, TumourMethData, xcoredata Suggests Me AlphaMissenseR, ANF, AnnotationHub, bambu, Banksy, CellMapper, crumblr, DESpace, dreamlet, ELMER, genomicInstability, h5mread, HDF5Array, HVP, jazzPanda, lute, mariner, missMethyl, MsBackendRawFileReader, multiWGCNA, muscat, nullranges, planet, quantiseqr, rawDiag, rawrr, recountmethylation, SingleMoleculeFootprinting, sosta, SparseArray, SPOTlight, standR, TCGAbiolinks, TENxIO, Voyager, xcore, BioPlex, celarefData, curatedAdipoArray, epimutacionsData, GSE103322, GSE13015, GSE159526, GSE62944, muleaData, smokingMouse, SubcellularSpatialData, tissueTreg, TransOmicsData Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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