This is the development version of scMitoMut; for the stable release version, see scMitoMut.
Single-cell Mitochondrial Mutation Analysis ToolBioconductor version: Development (3.22)
This package is designed for calling lineage-informative mitochondrial mutations using single-cell sequencing data, such as scRNASeq and scATACSeq (preferably the latter due to RNA editing issues). It includes functions for mutation calling and visualization. Mutation calling is done using beta-binomial distribution.
Author: Wenjie Sun [cre, aut] ORCID: 0000-0002-3100-2346 , Leila Perie [ctb]
Maintainer: Wenjie Sun <sunwjie at gmail.com>
Citation (from within R, entercitation("scMitoMut")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scMitoMut")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scMitoMut")Follow Installation instructions to use this package in your R session.
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