This is the development version of pgxRpi; for the stable release version, see pgxRpi.
R wrapper for ProgenetixBioconductor version: Development (3.22)
The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix databaseâan open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.
Author: Hangjia Zhao [aut, cre] ORCID: 0000-0001-8376-5751 , Michael Baudis [aut] ORCID: 0000-0002-9903-4248
Maintainer: Hangjia Zhao <hangjia.zhao at uzh.ch>
Citation (from within R, entercitation("pgxRpi")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pgxRpi")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pgxRpi")Follow Installation instructions to use this package in your R session.
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