This is the development version of cbaf; for the stable release version, see cbaf.
Automated functions for comparing various omic data from cbioportal.orgBioconductor version: Development (3.22)
This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.
Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]
Maintainer: Arman Shahrisa <shahrisa.arman at hotmail.com>
Citation (from within R, entercitation("cbaf")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cbaf")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cbaf")
Details biocViews AssayDomain, BiomedicalInformatics, ComparativeGenomics, DNAMethylation, Epigenetics, GeneExpression, Genetics, Microarray, ResearchField, Software, Transcription, Transcriptomics Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Artistic-2.0 Depends R (>= 4.1) Imports BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, grDevices, stats, utils, openxlsx, zip System Requirements URL See More Package Archives
Follow Installation instructions to use this package in your R session.
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