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Bioconductor - biodbHmdb (development version)

biodbHmdb

This is the development version of biodbHmdb; for the stable release version, see biodbHmdb.

biodbHmdb, a library for connecting to the HMDB Database

Bioconductor version: Development (3.22)

The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.

Author: Pierrick Roger [aut, cre] ORCID: 0000-0001-8177-4873

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbHmdb")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("biodbHmdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbHmdb")
Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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