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Bioconductor - adSplit (development version)

adSplit

This is the development version of adSplit; for the stable release version, see adSplit.

Annotation-Driven Clustering

Bioconductor version: Development (3.22)

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("adSplit")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("adSplit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adSplit")
Details biocViews Clustering, Microarray, Software Version 1.79.0 In Bioconductor since BioC 1.8 (R-2.3) (19 years) License GPL (>= 2) Depends R (>= 2.1.0), methods (>= 2.1.0) Imports AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGGREST(>= 1.30.1), multtest(>= 1.6.0), stats (>= 2.1.0) System Requirements URL http://compdiag.molgen.mpg.de/software/adSplit.shtml See More Package Archives

Follow Installation instructions to use this package in your R session.

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