This is the development version of SiPSiC; for the stable release version, see SiPSiC.
Calculate Pathway Scores for Each Cell in scRNA-Seq DataBioconductor version: Development (3.22)
Infer biological pathway activity of cells from single-cell RNA-sequencing data by calculating a pathway score for each cell (pathway genes are specified by the user). It is recommended to have the data in Transcripts-Per-Million (TPM) or Counts-Per-Million (CPM) units for best results. Scores may change when adding cells to or removing cells off the data. SiPSiC stands for Single Pathway analysis in Single Cells.
Author: Daniel Davis [aut, cre] ORCID: 0000-0001-7863-1521 , Yotam Drier [aut]
Maintainer: Daniel Davis <DanielDavis000 at gmail.com>
Citation (from within R, entercitation("SiPSiC")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SiPSiC")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SiPSiC")Follow Installation instructions to use this package in your R session.
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