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Bioconductor - ROTS (development version)

ROTS

This is the development version of ROTS; for the stable release version, see ROTS.

Reproducibility-Optimized Test Statistic

Bioconductor version: Development (3.22)

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Tomi Suomi <tomi.suomi at utu.fi>

Citation (from within R, enter citation("ROTS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ROTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")
ROTS: Reproducibility Optimized Test Statistic PDF R Script Reference Manual PDF NEWS Text Details biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, Proteomics, RNASeq, Software Version 2.1.1 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL (>= 2) Depends R (>= 3.6) Imports Rcpp, stats, Biobase, methods, BiocParallel, lme4 System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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