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Bioconductor - OPWeight (development version)

OPWeight

This is the development version of OPWeight; for the stable release version, see OPWeight.

Optimal p-value weighting with independent information

Bioconductor version: Development (3.22)

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Citation (from within R, enter citation("OPWeight")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OPWeight")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OPWeight")
Details biocViews BiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Artistic-2.0 Depends R (>= 3.4.0) Imports graphics, qvalue, MASS, tibble, stats System Requirements URL https://github.com/mshasan/OPWeight See More Suggests airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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