This is the development version of MBECS; for the stable release version, see MBECS.
Evaluation and correction of batch effects in microbiome data-setsBioconductor version: Development (3.22)
The Microbiome Batch Effect Correction Suite (MBECS) provides a set of functions to evaluate and mitigate unwated noise due to processing in batches. To that end it incorporates a host of batch correcting algorithms (BECA) from various packages. In addition it offers a correction and reporting pipeline that provides a preliminary look at the characteristics of a data-set before and after correcting for batch effects.
Author: Michael Olbrich [aut, cre] ORCID: 0000-0003-2789-3382
Maintainer: Michael Olbrich <M.Olbrich at protonmail.com>
Citation (from within R, entercitation("MBECS")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MBECS")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBECS")Follow Installation instructions to use this package in your R session.
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