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Bioconductor - MBASED (development version)

MBASED

This is the development version of MBASED; for the stable release version, see MBASED.

Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection

Bioconductor version: Development (3.22)

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

Author: Oleg Mayba, Houston Gilbert

Maintainer: Oleg Mayba <mayba.oleg at gene.com>

Citation (from within R, enter citation("MBASED")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MBASED")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBASED")
Details See More Suggests BiocStyle Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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