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Showing content from http://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/CHRONOS.html below:

Bioconductor - CHRONOS (development version)

CHRONOS

This is the development version of CHRONOS; for the stable release version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: Development (3.22)

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Citation (from within R, enter citation("CHRONOS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CHRONOS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")
Details biocViews GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL-2 Depends R (>= 3.5) Imports XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava System Requirements Java version >= 1.7, Pandoc URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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