A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/ADAM.html below:

Bioconductor - ADAM (development version)

ADAM

This is the development version of ADAM; for the stable release version, see ADAM.

ADAM: Activity and Diversity Analysis Module

Bioconductor version: Development (3.22)

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Author: André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>

Citation (from within R, enter citation("ADAM")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ADAM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ADAM")
Details biocViews GeneExpression, GeneSetEnrichment, KEGG, Microarray, Pathways, Software Version 1.25.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License GPL (>= 2) Depends R (>= 3.5), stats, utils, methods Imports Rcpp (>= 0.12.18), GO.db(>= 3.6.0), KEGGREST(>= 1.20.2), knitr, pbapply (>= 1.3-4), dplyr (>= 0.7.6), DT (>= 0.4), stringr (>= 1.3.1), SummarizedExperiment(>= 1.10.1) System Requirements C++11 URL See More Package Archives

Follow Installation instructions to use this package in your R session.


RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4