Showing content from http://purl.obolibrary.org/obo/uberon/basic.obo below:
format-version: 1.2 data-version: uberon/releases/2025-05-28/uberon-basic.owl subsetdef: added_for_HCA "Classes tagged with this subset property were added upon request from the Human Cell Atlas (HCA)." subsetdef: common_anatomy "Terms applicable across life, not restricted to Metazoa" subsetdef: cumbo "CUMBO" subsetdef: cyclostome_subset "cyclostome structures" subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture" subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology" subsetdef: developmental_classification "developmental_classification" subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked" subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes." subsetdef: efo_slim "EFO slim" subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked" subsetdef: feed_aligned "subset of classes that have logical defs text defs and synonyms aligned with FEED" subsetdef: functional_classification "functional_classification" subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes" subsetdef: homology_grouping "A grouping class that depends on an assumption of homology between subclasses" subsetdef: human_reference_atlas "" subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA" subsetdef: location_grouping "" subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads" subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out" subsetdef: non_informative "abstract class brought in to group ontology classes but not informative" subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements" subsetdef: pheno_slim "Phenotype slim" subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA" subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms" subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified" subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO" synonymtypedef: BRAIN_NAME_ABV "brain name abbreviations (drosophila)" synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy" synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged" synonymtypedef: DEVELOPMENTAL "developmental term" synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded" synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes" synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals" synonymtypedef: OMO:0003000 "abbreviation" synonymtypedef: OMO:0003002 "dubious synonym" synonymtypedef: OMO:0003004 "plural form" synonymtypedef: OMO:0003011 "latin term" synonymtypedef: PENDING_REVIEW "expert consultation and attribution required" synonymtypedef: SENSU "taxonomic disambiguation" synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns" default-namespace: uberon idspace: dc http://purl.org/dc/elements/1.1/ idspace: doap http://usefulinc.com/ns/doap# idspace: foaf http://xmlns.com/foaf/0.1/ idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# idspace: sssom https://w3id.org/sssom/ idspace: terms http://purl.org/dc/terms/ treat-xrefs-as-equivalent: AEO treat-xrefs-as-equivalent: BILA treat-xrefs-as-equivalent: BSPO treat-xrefs-as-equivalent: CARO treat-xrefs-as-equivalent: GO treat-xrefs-as-equivalent: OG treat-xrefs-as-equivalent: VSAO treat-xrefs-as-is_a: BFO treat-xrefs-as-is_a: VHOG remark: Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found. ontology: uberon/uberon-basic property_value: dc-contributor https://github.com/orgs/pato-ontology/teams/pato-community property_value: dc-contributor https://orcid.org/0000-0001-5889-4463 property_value: dc-contributor https://orcid.org/0000-0001-7433-0086 property_value: dc-contributor https://orcid.org/0000-0001-7476-6306 property_value: dc-contributor https://orcid.org/0000-0001-7920-5321 property_value: dc-contributor https://orcid.org/0000-0001-7958-3701 property_value: dc-contributor https://orcid.org/0000-0001-8682-8754 property_value: dc-contributor https://orcid.org/0000-0001-9107-0714 property_value: dc-contributor https://orcid.org/0000-0001-9990-8331 property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dc-contributor https://orcid.org/0000-0002-0956-8634 property_value: dc-contributor https://orcid.org/0000-0002-1112-5832 property_value: dc-contributor https://orcid.org/0000-0002-1572-1316 property_value: dc-contributor https://orcid.org/0000-0002-1604-3078 property_value: dc-contributor https://orcid.org/0000-0002-1615-2899 property_value: dc-contributor https://orcid.org/0000-0002-2061-091X property_value: dc-contributor https://orcid.org/0000-0002-2244-7917 property_value: dc-contributor https://orcid.org/0000-0002-3437-3329 property_value: dc-contributor https://orcid.org/0000-0002-3467-2636 property_value: dc-contributor https://orcid.org/0000-0002-3734-1859 property_value: dc-contributor https://orcid.org/0000-0002-5111-7263 property_value: dc-contributor https://orcid.org/0000-0002-6490-7723 property_value: dc-contributor https://orcid.org/0000-0002-7073-9172 property_value: dc-contributor https://orcid.org/0000-0002-8406-3871 property_value: dc-contributor https://orcid.org/0000-0002-8455-3213 property_value: dc-contributor https://orcid.org/0000-0002-8688-6599 property_value: dc-contributor https://orcid.org/0000-0002-9415-5104 property_value: dc-contributor https://orcid.org/0000-0002-9818-3030 property_value: dc-contributor https://orcid.org/0000-0002-9900-7880 property_value: dc-contributor https://orcid.org/0000-0003-1980-3228 property_value: dc-contributor https://orcid.org/0000-0003-2105-2283 property_value: dc-contributor https://orcid.org/0000-0003-2338-2550 property_value: dc-contributor https://orcid.org/0000-0003-3691-0324 property_value: dc-contributor https://orcid.org/0000-0003-4423-4370 property_value: dc-contributor https://www.wikidata.org/wiki/Q11695472 property_value: dc-contributor https://www.wikidata.org/wiki/Q23809253 property_value: dc-contributor https://www.wikidata.org/wiki/Q4964264 property_value: dc-contributor https://www.wikidata.org/wiki/Q54985720 property_value: dc-contributor https://www.wikidata.org/wiki/Q6983890 property_value: dc-contributor https://www.wikidata.org/wiki/Q7650732 property_value: dc-contributor https://www.wikidata.org/wiki/Q85793053 property_value: dc-creator https://orcid.org/0000-0001-5839-6798 property_value: dc-creator https://orcid.org/0000-0001-7972-3866 property_value: dc-creator https://orcid.org/0000-0001-9114-8737 property_value: dc-creator https://orcid.org/0000-0002-1810-9886 property_value: dc-creator https://orcid.org/0000-0002-6601-2165 property_value: dc-creator https://orcid.org/0000-0002-7356-1779 property_value: dc-creator https://orcid.org/0000-0002-9611-1279 property_value: dc-creator https://orcid.org/0000-0003-3162-7490 property_value: dc-creator https://orcid.org/0000-0003-3308-6245 property_value: dc-description "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data." xsd:string property_value: dc-publisher "http://uberon.org" xsd:anyURI property_value: dc-source "aggregates AAO from 13:04:2012" xsd:string property_value: dc-source "aggregates TAO from 09:08:2012" xsd:string property_value: dc-source "aggregates VSAO from 16:07:2012" xsd:string property_value: dc-source http://braininfo.rprc.washington.edu/ property_value: dc-source http://dbpedia.org property_value: dc-source http://en.wikipedia.org/wiki/ property_value: dc-source http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl property_value: dc-source http://palaeos.com property_value: dc-source http://pons.incf.org/wiki/Common_Upper_Mammalian_Brain_Ontology_%28Cumbo%29 property_value: dc-source http://purl.obolibrary.org/obo/aao.owl property_value: dc-source http://purl.obolibrary.org/obo/aba.owl property_value: dc-source http://purl.obolibrary.org/obo/aeo.owl property_value: dc-source http://purl.obolibrary.org/obo/bila.owl property_value: dc-source http://purl.obolibrary.org/obo/bto.owl property_value: dc-source http://purl.obolibrary.org/obo/caro.owl property_value: dc-source http://purl.obolibrary.org/obo/cl.owl property_value: dc-source http://purl.obolibrary.org/obo/ehdaa2.owl property_value: dc-source http://purl.obolibrary.org/obo/emapa.owl property_value: dc-source http://purl.obolibrary.org/obo/fbbt.owl property_value: dc-source http://purl.obolibrary.org/obo/fma.owl property_value: dc-source http://purl.obolibrary.org/obo/go.owl property_value: dc-source http://purl.obolibrary.org/obo/hp.owl property_value: dc-source http://purl.obolibrary.org/obo/ma.owl property_value: dc-source http://purl.obolibrary.org/obo/mp.owl property_value: dc-source http://purl.obolibrary.org/obo/tao.owl property_value: dc-source http://purl.obolibrary.org/obo/vhog.owl property_value: dc-source http://purl.obolibrary.org/obo/vsao.owl property_value: dc-source http://purl.obolibrary.org/obo/wbbt.owl property_value: dc-source http://purl.obolibrary.org/obo/xao.owl property_value: dc-source http://purl.obolibrary.org/obo/zfa.owl property_value: dc-source http://uri.neuinfo.org/nif/nifstd property_value: dc-source "http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop" xsd:anyURI property_value: dc-source "http://wiki.phenotypercn.org/wiki/August_2012_Notes" xsd:anyURI property_value: dc-source http://www.brain-map.org property_value: dc-source http://www.e-lico.eu/public/kupo/kupo.owl property_value: dc-source http://www.ebi.ac.uk/efo/efo.owl property_value: dc-source "https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit" xsd:anyURI property_value: dc-source "https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit" xsd:anyURI property_value: dc-source "https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit" xsd:anyURI property_value: dc-source "https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#" xsd:anyURI property_value: dc-source "https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0" xsd:anyURI property_value: dc-source "ISBN:0030229073 Invertebrate Zoology, Barnes" xsd:string property_value: dc-source "ISBN:0073040584 Vertebrates, Kardong" xsd:string property_value: dc-source "ISBN:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis" xsd:string property_value: dc-source "ISBN:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall" xsd:string property_value: dc-source "ISBN:0443065837 Human embryology, Larsen" xsd:string property_value: dc-source "ISBN:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos" xsd:string property_value: dc-source "ISBN:0683400088 Stedman's Medical Dictionary" xsd:string property_value: dc-source "ISBN:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher" xsd:string property_value: dc-source "ISBN:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack" xsd:string property_value: dc-source "ISBN:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber" xsd:string property_value: dc-source "ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody" xsd:string property_value: dc-source "ISBN:9780120749034 The laboratory rat" xsd:string property_value: dc-source "ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte" xsd:string property_value: dc-source "ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader" xsd:string property_value: dc-source "ISBN:9780878932504 Developmental Biology" xsd:string property_value: dc-source "MESH" xsd:string property_value: dc-source "PMID:11433360 Placental development: lessons from mouse mutants" xsd:string property_value: dc-source "PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen" xsd:string property_value: dc-title "Uber-anatomy ontology" xsd:string property_value: dcterms-isReferencedBy "http://genomebiology.com/2012/13/1/R5" xsd:anyURI property_value: dcterms-isReferencedBy "http://www.ncbi.nlm.nih.gov/pubmed/22293552" xsd:anyURI property_value: dcterms-license http://creativecommons.org/licenses/by/3.0/ property_value: doap-bug-database "https://github.com/obophenotype/uberon/issues/" xsd:anyURI property_value: doap-GitRepository "https://github.com/cmungall/uberon/" xsd:anyURI property_value: doap-mailing-list "https://lists.sourceforge.net/lists/listinfo/obo-anatomy" xsd:anyURI property_value: doap-SVNRepository "https://obo.svn.sourceforge.net/svnroot/obo/uberon/" xsd:anyURI property_value: foaf-homepage "http://uberon.org" xsd:anyURI property_value: has_ontology_root_term UBERON:0000104 property_value: has_ontology_root_term UBERON:0001062 property_value: owl:versionInfo "2025-05-28" xsd:string treat-xrefs-as-has-subclass: EHDAA treat-xrefs-as-has-subclass: EV treat-xrefs-as-has-subclass: NCIT treat-xrefs-as-has-subclass: OGES treat-xrefs-as-has-subclass: SCTID treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292 treat-xrefs-as-reverse-genus-differentia: DHBA part_of NCBITaxon:9606 treat-xrefs-as-reverse-genus-differentia: EHDAA2 part_of NCBITaxon:9606 treat-xrefs-as-reverse-genus-differentia: EMAPA part_of NCBITaxon:10090 treat-xrefs-as-reverse-genus-differentia: FBdv part_of NCBITaxon:7227 treat-xrefs-as-reverse-genus-differentia: FMA part_of NCBITaxon:9606 treat-xrefs-as-reverse-genus-differentia: HAO part_of NCBITaxon:7399 treat-xrefs-as-reverse-genus-differentia: HBA part_of NCBITaxon:9606 treat-xrefs-as-reverse-genus-differentia: KUPO part_of NCBITaxon:9606 treat-xrefs-as-reverse-genus-differentia: MA part_of NCBITaxon:10090 treat-xrefs-as-reverse-genus-differentia: MFO part_of NCBITaxon:8089 treat-xrefs-as-reverse-genus-differentia: PBA part_of NCBITaxon:9443 treat-xrefs-as-reverse-genus-differentia: SPD part_of NCBITaxon:6893 treat-xrefs-as-reverse-genus-differentia: TADS part_of NCBITaxon:6939 treat-xrefs-as-reverse-genus-differentia: TAO part_of NCBITaxon:32443 treat-xrefs-as-reverse-genus-differentia: TGMA part_of NCBITaxon:44484 treat-xrefs-as-reverse-genus-differentia: WBbt part_of NCBITaxon:6237 treat-xrefs-as-reverse-genus-differentia: WBls part_of NCBITaxon:6237 treat-xrefs-as-reverse-genus-differentia: XAO part_of NCBITaxon:8353 treat-xrefs-as-reverse-genus-differentia: ZFA part_of NCBITaxon:7954 treat-xrefs-as-reverse-genus-differentia: ZFS part_of NCBITaxon:7954 [Term] id: UBERON:0000000 name: processual entity def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity] comment: This term is being aligned with COB subset: common_anatomy subset: upper_level xref: BFO:0000003 relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: seeAlso "https://github.com/OBOFoundry/COB/issues/51" xsd:anyURI [Term] id: UBERON:0000002 name: uterine cervix def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cervix] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "canalis cervicis uteri" EXACT OMO:0003011 [FMA:17740, FMA:TA] synonym: "caudal segment of uterus" EXACT [] synonym: "cervical canal" RELATED [FMA:17740] synonym: "cervical canal of uterus" EXACT [FMA:17740] synonym: "cervix" BROAD [EFO:0000979] synonym: "cervix of uterus" RELATED [BTO:0001421] synonym: "cervix uteri" EXACT OMO:0003011 [EMAPA:29927] synonym: "neck of uterus" EXACT [FMA:17740] synonym: "uterine cervix" EXACT [FMA:17740] xref: BTO:0001421 xref: BTO:0002249 xref: CALOHA:TS-0134 xref: EFO:0000979 xref: EMAPA:29927 xref: EV:0100114 xref: FMA:17740 xref: GAID:376 xref: galen:CervixUteri xref: MA:0000392 xref: MAT:0000292 xref: MESH:D002584 xref: NCIT:C12311 xref: SCTID:181453009 xref: UMLS:C0007874 {source="ncithesaurus:Cervix"} xref: VHOG:0001359 xref: Wikipedia:Cervix is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: external_definition "The narrow caudal end of the uterus that opens into the vagina. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001359", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/uterine+cervix"} property_value: has_relational_adjective "cervical" xsd:string property_value: homology_notes "The evolution of mammals is associated with radical changes in their reproductive biology, particularly the structure and function of the female reproductive organs. These changes include the evolution of the uterus, cervix, vagina, placenta and specialized cell types associated with each of those structures.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001359", ontology="VHOG", source="DOI:10.1098/rspb.2004.2848 Lynch VJ, Roth JJ, Takahashi K, Dunn CW, Nonaka DF, Stopper GF, Wagner GP, Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals. Proceedings of the Royal Society of London, Series B (2004)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000003 name: naris def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [http://orcid.org/0000-0001-9114-8737] subset: uberon_slim subset: vertebrate_core xref: AAO:0000311 xref: EHDAA2:0001225 xref: EHDAA:9083 xref: EMAPA:17847 xref: galen:Naris xref: MA:0000282 xref: SCTID:272650008 xref: VHOG:0000663 is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0000033 {source="ZFA"} ! head relationship: part_of UBERON:0005725 ! olfactory system property_value: external_definition "One of paired external openings of the nasal chamber.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000311", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure" xsd:string {external_ontology="FMA"} property_value: homology_notes "Naris refer to the external and interior naris (choana) of tetrapods, and to anterior and posterior naris of zebrafish. It seems now accepted that the structure is homologous: The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000663", ontology="VHOG", source="DOI:10.1038/nature02843 Zhu M, Ahlberg PE, The origin of the internal nostril in tetrapodes. Nature (2004)", source="http://bgee.unil.ch/"} property_value: taxon_notes "in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity" xsd:string [Term] id: UBERON:0000004 name: nose def: "The olfactory organ of vertebrates, consisting of nares, olfactory epithelia and the structures and skeletal framework of the nasal cavity." [UBERON:cjm] subset: efo_slim subset: major_organ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nasal sac" EXACT SENSU [ZFA:0000047] synonym: "nasus" RELATED OMO:0003011 [Wikipedia:Nose] synonym: "nose" EXACT HUMAN_PREFERRED [MA:0000281] synonym: "olfactory apparatus" RELATED [UBERON:cjm] synonym: "peripheral olfactory organ" EXACT [ZFA:0000047] synonym: "proboscis" RELATED [] xref: BTO:0000840 xref: CALOHA:TS-2037 xref: EHDAA2:0001274 xref: EHDAA:1502 xref: EMAPA:16542 xref: EV:0100037 xref: EV:0100370 xref: FMA:46472 xref: GAID:77 xref: galen:Nose xref: MA:0000281 xref: MAT:0000139 xref: MESH:D009666 xref: MIAA:0000139 xref: NCIT:C12756 xref: SCTID:181195007 xref: TAO:0000047 xref: UMLS:C0028429 {source="ncithesaurus:Nose"} xref: Wikipedia:Nose xref: ZFA:0000047 is_a: UBERON:0002268 ! olfactory organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003050 {source="ZFA"} ! olfactory placode relationship: part_of UBERON:0001456 {source="FMA", source="ZFA-def"} ! face property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d0/Canine-nose.jpg" xsd:anyURI property_value: external_definition "a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)[Wikipedia:Nose]." xsd:string {source="Wikipedia:Nose"} property_value: external_definition "Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired[ZFA:0000047]." xsd:string {source="ZFA:0000047"} property_value: external_definition "the organ that is specialized for smell and is part of the respiratory system" xsd:string {source="MP:0002233"} property_value: taxon_notes "the structure of the nose varies across vertebrates. In tetrapods the nose is part of the respiratory system.[PMID:25312359]" xsd:string [Term] id: UBERON:0000005 name: chemosensory organ subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0005726 ! chemosensory system [Term] id: UBERON:0000006 name: islet of Langerhans def: "The clusters of hormone-producing cells that are scattered throughout the pancreas." [MA:0000127, MESH:A03.734.414, MP:0005215] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "island of Langerhans" RELATED [BTO:0000991] synonym: "island of pancreas" RELATED [BTO:0000991] synonym: "islets of Langerhans" RELATED [] synonym: "pancreatic insula" EXACT [] synonym: "pancreatic islet" EXACT [] xref: AAO:0010406 xref: BTO:0000991 xref: CALOHA:TS-0741 xref: EFO:0000856 xref: EMAPA:32927 xref: EV:0100130 xref: FMA:16016 xref: GAID:324 xref: MA:0000127 xref: MAT:0000076 xref: MESH:D007515 xref: MIAA:0000076 xref: NCIT:C12608 xref: UMLS:C0022131 {source="ncithesaurus:Islet_of_Langerhans"} xref: VHOG:0000646 xref: Wikipedia:Islets_of_Langerhans xref: XAO:0000159 is_a: UBERON:0034922 ! cell cluster relationship: fma_set_term FMA:76489 relationship: part_of UBERON:0000016 ! endocrine pancreas relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png" xsd:anyURI property_value: external_definition "Anatomical structure which consists of glands developed from pancreatic ducts in the larvae and secrete insulin.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010406", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "Mammals, birds, reptiles and amphibians have a pancreas with similar histology and mode of development, while in some fish, the islet cells are segregated as Brockmann bodies.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000646", ontology="VHOG", source="PMID:7600975 Slack JMW, Developmental biology of the pancreas. Development (1995)", source="http://bgee.unil.ch/"} property_value: taxon_notes "A primitive exocrine pancreas can be found in holocephalan cartilaginous fish; a pancreatic duct directly ending in the gut lumen is connected to a glandular structure made of exocrine cells and associated with cell islets, which comprises three different hormone-producing cell types: insulin, somatostatin and glucagon (Yui and Fujita, 1986)" xsd:string {source="PMID:16417468"} [Term] id: UBERON:0000007 name: pituitary gland def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator] comment: Terminology note: hypophysis and pituitary gland are often used informally as synonyms, but the hypophysis also includes the small infundibular or pituitary stalk[Neumann 2020] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "glandula pituitaria" EXACT OMO:0003011 [Wikipedia:Pituitary_gland] synonym: "Hp" BROAD OMO:0003000 [BIRNLEX:1353, NIFSTD:NeuroNames_abbrevSource] synonym: "hypophysis" RELATED [ZFA:0000118] synonym: "hypophysis cerebri" RELATED [MA:0000176] synonym: "pituitary" EXACT [BTO:0001073] synonym: "pituitary body" EXACT [BTO:0001073] xref: AAO:0010536 xref: BAMS:PIT xref: BAMS:Pit xref: BIRNLEX:1353 xref: BM:Die-Hy-HY xref: BTO:0001073 xref: CALOHA:TS-0798 xref: DHBA:10505 xref: EFO:0000857 xref: EHDAA2:0001471 xref: EHDAA:2183 xref: EHDAA:4477 xref: EMAPA:35998 xref: EV:0100132 xref: FMA:13889 xref: GAID:457 xref: HBA:4634 xref: MA:0000176 xref: MAT:0000077 xref: MESH:D010902 xref: MIAA:0000077 xref: NCIT:C12399 xref: neuronames:399 {source="BIRNLEX:1353"} xref: SCTID:181125003 xref: TAO:0000118 xref: UMLS:C0032005 {source="ncithesaurus:Pituitary_Gland", source="BIRNLEX:1353"} xref: VHOG:0000143 xref: Wikipedia:Pituitary_gland xref: XAO:0000017 xref: ZFA:0000118 is_a: UBERON:0002368 {source="BTO", source="EFO", source="VHOG"} ! endocrine gland is_a: UBERON:0003133 ! reproductive organ is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0003937 ! reproductive gland is_a: UBERON:0004121 ! ectoderm-derived structure relationship: immediate_transformation_of UBERON:0034875 {source="https://orcid.org/0000-0003-3308-6245"} ! future pituitary gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png" xsd:anyURI property_value: external_definition "An endocrine gland derived from infundibulum of the floor of the diencephalon and an ectodermal dorsal protrusion from the buccal cavity which controls the secretion of many hormones influencing the function of various organs of the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010536", ontology="AAO", source="AAO:BJB"} property_value: external_definition "An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000118", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000143", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510", source="http://bgee.unil.ch/"} property_value: taxon_notes "The lamprey possesses a distinct pituitary organ and hormones, the ascidian does not show distinct evidence of them [Sower S, Freamat M, Kavanaugh S. The origins of the vertebrate hypothalamic-pituitary-gonadal (HPG) and hypothalamic-pituitary-thyroid (HPT) endocrine systems: new insights from lampreys. Gen Comp Endocrinol 2009;161:20-9]" xsd:string [Term] id: UBERON:0000009 name: submucosa def: "A layer of dense irregular connective tissue that lines organs and supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle. [WP,unvetted]." [Wikipedia:Submucosa] subset: pheno_slim subset: uberon_slim synonym: "organ submucosa" EXACT [FMA:85391] synonym: "region of submucosa" EXACT [FMA:85392] synonym: "submucosa of organ" EXACT [FMA:85391] synonym: "submucosa of region of organ" EXACT [FMA:85392] synonym: "submucous layer" RELATED [BTO:0002107] synonym: "tela submucosa" RELATED [BTO:0002107] synonym: "tunica submucosa" RELATED [] xref: BTO:0002107 xref: FMA:85391 xref: FMA:85392 xref: NCIT:C13167 xref: SCTID:68439008 xref: UMLS:C0225344 {source="ncithesaurus:Submucosa"} xref: Wikipedia:Submucosa is_a: UBERON:0004923 ! organ component layer property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI property_value: has_relational_adjective "submucosal" xsd:string [Term] id: UBERON:0000010 name: peripheral nervous system def: "A major division of the nervous system that contains nerves which connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands." [GO:0007422] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pars peripherica" EXACT OMO:0003011 [FMA:9903, FMA:TA, Wikipedia:Peripheral_nervous_system] synonym: "PNS" BROAD OMO:0003000 [] synonym: "systema nervosum periphericum" EXACT OMO:0003011 [FMA:9903, FMA:TA, Wikipedia:Peripheral_nervous_system] xref: AAO:0000429 xref: BAMS:PNS xref: BILA:0000081 xref: BIRNLEX:1111 xref: BTO:0001028 xref: CALOHA:TS-0808 xref: EFO:0000891 xref: EHDAA2:0001445 xref: EHDAA:2893 xref: EMAPA:16665 xref: EV:0100335 xref: FBbt:00005098 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9903 xref: GAID:715 xref: MA:0000218 xref: MAT:0000338 xref: MESH:D017933 xref: MIAA:0000338 xref: NCIT:C12465 xref: neuronames:3232 xref: SCTID:362292005 xref: TAO:0000142 xref: UMLS:C0206417 {source="ncithesaurus:Peripheral_Nervous_System", source="BIRNLEX:1111"} xref: UMLS:C1305921 {source="BIRNLEX:1111"} xref: VHOG:0000399 xref: Wikipedia:Peripheral_nervous_system xref: XAO:0000178 xref: ZFA:0000142 is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png" xsd:anyURI property_value: external_definition "Nervous structures including ganglia outside of the central nervous system. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000142", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of nervous system in which nerves extend throughout the body outside of the brain and spinal cord.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000429", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The peripheral nervous system (PNS) is the part of the nervous system connected to the CNS which contains cranial nerves III - XII, spinal, peripheral and autonomic nerves. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: homology_notes "(...) specific vertebrate traits within the chordate phylum such as skeletal tissues, PNS, and spectacular head and brain development, are linked to the NC (neural crest) and its derivatives.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000399", ontology="VHOG", source="DOI:10.1007/978-0-387-46954-6_6 Dupin E, Creuzet S, Le Douarin NM, The contribution of the neural crest to the vertebrate body. Advances in experimental medicine and biology (2006)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000011 name: parasympathetic nervous system def: "The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia[GO]." [GO:0048486] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "parasympathetic part of autonomic division of nervous system" EXACT [] synonym: "pars parasympathica divisionis autonomici systematis nervosi" EXACT OMO:0003011 [FMA:9907, FMA:TA] synonym: "pars parasympathica divisionis autonomici systematis nervosi" RELATED OMO:0003011 [Wikipedia:Parasympathetic_nervous_system] synonym: "PNS - parasympathetic" EXACT [] xref: AAO:0010488 xref: BIRNLEX:2517 xref: BTO:0001833 xref: CALOHA:TS-2094 xref: EFO:0000894 xref: EHDA:10096 xref: EHDAA2:0001402 xref: EHDAA:4655 xref: EMAPA:17270 xref: FMA:9907 xref: GAID:708 xref: MA:0000223 xref: MAT:0000101 xref: MESH:D010275 xref: MIAA:0000101 xref: NCIT:C12764 xref: SCTID:362496006 xref: TAO:0001575 xref: UMLS:C0030510 {source="BIRNLEX:2517", source="ncithesaurus:Parasympathetic_Nervous_System"} xref: UMLS:C1305770 {source="BIRNLEX:2517"} xref: VHOG:0000755 xref: Wikipedia:Parasympathetic_nervous_system xref: ZFA:0001575 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="WP", source="ZFA-modified-from-isa"} ! autonomic nervous system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI property_value: external_definition "Part of the autonomic nervous system which has opposing physiological effects of the sympathetic nervous system. Examples include decreasing the heart rate or dilating the blood vessels.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010488", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "In mammals, the autonomic nervous system is divided into two contrasting, antagonistic systems of control over visceral activity: the sympathetic system and the parasympathetic system (reference 1); In general, the teleosts may be considered phylogenetically the first class of vertebrates in which the heart is regulated by both sympathetic and parasympathetic neural pathways (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000755", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.634, DOI:10.1016/S0306-4530(98)00057-2 Porges SW, Love: an emergent property of the mammalian autonomic nervous system. Psychoneuroendocrinology (1998)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000012 name: somatic nervous system def: "Part of peripheral nervous system that includes the somatic parts of the cranial and spinal nerves and their ganglia and the peripheral sensory receptors." [NLXANAT:100301] subset: pheno_slim subset: uberon_slim synonym: "PNS - somatic" EXACT [] synonym: "somatic nervous system, somatic division" EXACT [NLXANAT:100301] synonym: "somatic part of peripheral nervous system" EXACT [UBERON:cjm] synonym: "somatic peripheral nervous system" EXACT [NLXANAT:100301] xref: EFO:0000892 xref: FMA:9904 xref: MA:0002850 xref: MAT:0000099 xref: MIAA:0000099 xref: NLXANAT:100301 xref: Wikipedia:Somatic_nervous_system is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0000013 name: sympathetic nervous system def: "The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [GO:0048485] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pars sympathica divisionis autonomici systematis nervosi" EXACT OMO:0003011 [FMA:9906, FMA:TA] synonym: "pars sympathica divisionis autonomici systematis nervosi" RELATED OMO:0003011 [Wikipedia:Sympathetic_nervous_system] synonym: "sympathetic nervous system" EXACT [] synonym: "sympathetic part of autonomic division of nervous system" EXACT [] xref: AAO:0010487 xref: BIRNLEX:2516 xref: BTO:0001832 xref: CALOHA:TS-2050 xref: EFO:0000893 xref: EHDAA2:0001971 xref: EHDAA:3769 xref: EMAPA:16985 xref: FMA:9906 xref: GAID:710 xref: MA:0000225 xref: MESH:D013564 xref: MIAA:0000100 xref: NCIT:C12795 xref: SCTID:362484004 xref: TAO:0001576 xref: UMLS:C0039044 {source="BIRNLEX:2516", source="ncithesaurus:Sympathetic_Nervous_System"} xref: UMLS:C1269646 {source="BIRNLEX:2516"} xref: VHOG:0000384 xref: Wikipedia:Sympathetic_nervous_system xref: ZFA:0001576 is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="ZFA-modified-from-isa"} ! autonomic nervous system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: development_notes "has developmental contribution from NC in verteberates (https://github.com/obophenotype/uberon/wiki/The-neural-crest)" xsd:string property_value: external_definition "Part of the autonomic nervous system which has opposing physiological effects of the parasympathetic nervous system. Examples include increasing the heart rate or constricting the blood vessels.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010487", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The part of the autonomic nervous system which chiefly contains adrenergic fibres and tends to control and reduce secretions, decrease the contractility and hence the tone of smooth muscles and provoke the contraction of blood vessels. Essentially, it consists of preganglionic fibres from the thoracic and upper lumbar parts of the spinal cord. These fibres, by means of delicate rami communicantes, cross over to ganglia sited in a pair of ganglionated cords on each side of the vertebral column or to more peripheral ganglia. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000384", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The autonomic nervous system is composed of three divisions: the sympathetic division, the parasympathetic division, and the enteric division. (...) In ray-finned teleost fishes, a sympathetic chain is present, and dual innervation of additional organs can be observed. A similar pattern can be found in amphibians (...). The evolution of the autonomic nervous system has been quite conservative, especially in the tetrapod lineage.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000384", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.461-463", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000014 name: zone of skin def: "Any portion of the organ that covers that body and consists of a layer of epidermis and a layer of dermis." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Skin] subset: pheno_slim synonym: "portion of skin" EXACT [] synonym: "region of skin" EXACT [] synonym: "skin" EXACT [MA:0000151] synonym: "skin region" EXACT [] synonym: "skin zone" EXACT [] xref: EHDAA:6530 xref: EV:0100152 xref: FMA:86166 xref: GAID:933 xref: MA:0000151 xref: MAT:0000284 xref: MESH:D012867 xref: MIAA:0000284 xref: SCTID:20795001 xref: VHOG:0000860 xref: Wikipedia:Skin is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 {source="FMA"} ! zone of organ relationship: part_of UBERON:0002097 ! skin of body property_value: curator_notes "Note the distinction between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg" xsd:anyURI property_value: external_ontology_notes "we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive" xsd:string property_value: homology_notes "(...) it is well-established that neural crest cells contribute to both the dermal skeleton (craniofacial bone, teeth, and the caudal fin rays of teleosts) and the integument, including craniofacial dermis and all pigment cells outside the retina (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000860", ontology="VHOG", source="DOI:10.1111/j.1469-7580.2008.01043.x Vickaryous MK, Sire JY, The integumentary skeleton of tetrapods: origin, evolution, and development. J Anat (2009)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000015 name: non-material anatomical boundary def: "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." [CARO:0000010] comment: Except in the case of abstracted fiat boundaries such as the midline plane of an organism, all 2D anatomical entities have a 3 dimensional projection. For example, the surface of the shell of a muscle has a distinct shape that projects into the third dimension. Note that boundaries are 2D structures. They have no thickness - and so can not be sites of gene expression or gene product localisation. For this, use boundary region terms. subset: common_anatomy subset: upper_level synonym: "anatomical boundary" EXACT [CARO:0000010] xref: AEO:0000192 xref: CARO:0000010 xref: FMA:50705 is_a: UBERON:0000466 {source="CARO"} ! immaterial anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000016 name: endocrine pancreas def: "The part of the pancreas that is part of the endocrine system and is made up of islet cells, which produce insulin, glucagon and somatostatin." [GO:GO, http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "endocrine pancreas" EXACT [] synonym: "endocrine part of pancreas" RELATED [BTO:0000650] synonym: "islets of Langerhans part of pancreas" RELATED [] synonym: "pars endocrina pancreatis" EXACT [] xref: BTO:0000650 xref: CALOHA:TS-1302 xref: EFO:0002542 xref: EMAPA:35305 xref: EV:0100129 xref: FMA:16018 xref: MA:0001582 xref: MESH:D007515 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32509 xref: SCTID:361339003 xref: TAO:0001260 xref: VHOG:0000049 xref: Wikipedia:Islets_of_Langerhans xref: ZFA:0001260 is_a: UBERON:0000471 {source="ZFA"} ! compound organ component is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0003923 ! dorsal pancreatic bud relationship: part_of UBERON:0000949 {source="AAO", source="FMA", source="XAO"} ! endocrine system relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "create a separate class for distributed pancreas, eg cyclostomes?" xsd:string property_value: external_definition "The part of the pancreas that acts as an endocrine gland, consisting of the islets of Langerhans, which secrete insulin and other hormones. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000049", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Pancreas"} property_value: external_definition "The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001260", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000049", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. C.R. Biologies (2007)", source="http://bgee.unil.ch/"} property_value: taxon_notes "endocrine and exocrine pancreas are not co-associated in hagfishes or lampreys" xsd:string {source="PMID:20959416"} [Term] id: UBERON:0000017 name: exocrine pancreas def: "The part of the pancreas that is part of the exocrine system and which produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]." [GOC:GO, http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "exocrine component of pancreas" RELATED [] synonym: "exocrine pancreas" EXACT [] synonym: "exocrine part of pancreas" RELATED [BTO:0000434] synonym: "pars exocrina pancreatis" EXACT [] xref: AAO:0010407 xref: BTO:0000434 xref: CALOHA:TS-1241 xref: EMAPA:35328 xref: EV:0100093 xref: FMA:16017 xref: MA:0002415 xref: MESH:D046790 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32546 xref: SCTID:248202004 xref: TAO:0001249 xref: UMLS:C0553695 {source="ncithesaurus:Exocrine_Pancreas"} xref: VHOG:0000048 xref: Wikipedia:Exocrine_component_of_pancreas xref: XAO:0000137 xref: ZFA:0001249 is_a: UBERON:0000409 ! serous gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0003924 ! ventral pancreatic bud relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001249", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "The part of the pancreas that acts as an exocrine gland, consisting of the pancreatic acini, which produce pancreatic juice and secrete it into the intestine to aid in protein digestion. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000048", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Pancreas"} property_value: homology_notes "In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000048", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. C.R. Biologies (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000018 name: compound eye def: "A light sensing organ composed of ommatidia." [FB:gg, Wikipedia:Compound_eye] subset: organ_slim subset: uberon_slim synonym: "adult compound eye" RELATED [] synonym: "faceted eye" RELATED [] synonym: "Facettenauge" RELATED [BTO:0001921] synonym: "insect eye" RELATED [] synonym: "Komplexauge" RELATED [BTO:0001921] synonym: "zusammengesetztes Auge" RELATED [BTO:0001921] xref: BTO:0001921 xref: FBbt:00004508 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000217 xref: IDOMAL:0002421 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TGMA:0000024 xref: Wikipedia:Compound_eye is_a: UBERON:0015165 ! multi-unit eye property_value: seeAlso "https://github.com/obophenotype/uberon/issues/457" xsd:anyURI property_value: taxon_notes "The term compound eye is sometimes used for the multi-unit eyes of annelids, bivalves, echinoderms. We follow Richter et al and restrict this class to the arthropod structure for these structures" xsd:string {source="PMID:21062451"} [Term] id: UBERON:0000019 name: camera-type eye def: "An organ of sight that includes the camera-type eyeball and supporting structures such as the lacrimal apparatus, the conjunctiva, the eyelid." [GO:0043010, https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "camera-type eye plus associated structures" RELATED [] synonym: "eye" BROAD [FMA:54448] synonym: "eyes" RELATED OMO:0003004 [TAO:0000107] synonym: "orbital part of face" RELATED [FMA:54448] synonym: "orbital region" RELATED [FMA:54448] synonym: "regio orbitalis" EXACT OMO:0003011 [FMA:54448, FMA:TA] synonym: "vertebrate eye" NARROW [] xref: AAO:0010340 xref: BIRNLEX:1169 xref: BTO:0004688 xref: EHDAA2:0000484 xref: EHDAA:936 xref: EMAPA:16198 xref: FMA:54448 xref: MA:0000261 xref: NCIT:C12401 xref: SCTID:181143004 xref: TAO:0000107 xref: UMLS:C0015392 {source="BIRNLEX:1169", source="ncithesaurus:Eye"} xref: UMLS:C1280202 {source="BIRNLEX:1169"} xref: VHOG:0000275 xref: XAO:0000179 xref: ZFA:0000107 is_a: UBERON:0000047 ! simple eye is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0003072 {evidence="definitional"} ! optic cup relationship: part_of UBERON:0004088 ! orbital region property_value: external_definition "A cavitated compound organ that transduces light waves into neural signals.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000107", ontology="TAO", source="TAO:wd"} property_value: external_ontology_notes "FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ), as well as other structures, and the orbit of skull. MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this" xsd:string {external_ontology="FMA"} property_value: homology_notes "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000275", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000020 name: sense organ def: "An organ that is capable of transducing sensory stimulus to the nervous system." [https://github.com/obophenotype/uberon/issues/549, https://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "organ of sense organ system" EXACT [OBOL:accepted] synonym: "organ of sensory organ system" EXACT [OBOL:accepted] synonym: "organ of sensory system" EXACT [OBOL:accepted] synonym: "sense organ system organ" EXACT [OBOL:automatic] synonym: "sensillum" NARROW [WBbt:0006929] synonym: "sensor" RELATED [] synonym: "sensory organ" EXACT [] synonym: "sensory organ system organ" EXACT [OBOL:automatic] synonym: "sensory system organ" EXACT [OBOL:accepted] synonym: "Sinnesorgan" RELATED [BTO:0000202] xref: AEO:0000094 xref: BSA:0000121 xref: BTO:0000202 xref: CALOHA:TS-2043 xref: EHDAA2:0001824 xref: EHDAA:500 xref: EMAPA:35955 xref: FBbt:00005155 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:63 xref: HAO:0000930 xref: MA:0000017 xref: MESH:D012679 xref: NCIT:C33224 xref: SCTID:244485009 xref: UMLS:C0935626 {source="ncithesaurus:Organ_of_the_Special_Sense"} xref: VHOG:0001407 xref: WBbt:0006929 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001032 ! sensory system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI [Term] id: UBERON:0000021 name: cutaneous appendage def: "Anatomical projection that protrudes from the skin. Examples: hair, nail, feather, claw, hoof, horn, wattle, spur, beak, antler, bristle and some scales." [https://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "epidermal appendage" NARROW [] synonym: "epidermal growth" RELATED [] synonym: "skin appendage" EXACT [FMA:71012] xref: CALOHA:TS-0051 xref: FMA:71012 xref: SCTID:276160000 is_a: UBERON:0013703 ! integumentary projection property_value: editor_note "Mammary glands develop by similar mechanisms, and there is an argument for including them here (e.g. http://www.ncbi.nlm.nih.gov/pubmed/20484386), but these structures do not fit the current definition (lactiferous glands are part of the integumentary system in FMA). Note the FMA class is a subdivision of epidermis, which may be too restrictive for our purposes here." xsd:string [Term] id: UBERON:0000022 name: feather def: "One of the epidermal growths that form the distinctive outer covering, or plumage, on birds. Feathers are formed in tiny follicles in the epidermis, or outer skin layer, that produce keratin proteins." [Wikipedia:Feather] subset: efo_slim subset: uberon_slim xref: BTO:0000447 xref: EFO:0000955 xref: GAID:1214 xref: MAT:0000156 xref: MESH:D005241 xref: SCTID:410027006 xref: Wikipedia:Feather is_a: UBERON:0000021 ! cutaneous appendage relationship: develops_from UBERON:0001003 ! skin epidermis relationship: never_in_taxon NCBITaxon:314146 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/41/Parts_of_feather_modified.jpg" xsd:anyURI property_value: seeAlso "http://xkcd.com/1104/" xsd:anyURI property_value: structure_notes "The beta-keratins in feathers, beaks and claws - and the claws, scales and shells of reptiles - are composed of protein strands hydrogen-bonded into beta-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the alpha-keratins of mammalian hair, horns and hoof." xsd:string property_value: taxon_notes "Among the characteristics that distinguish the extant Aves from other living groups. Feathers have also been noticed in those Theropoda which have been termed feathered dinosaurs. Although feathers cover most parts of the body of birds, they arise only from certain well-defined tracts on the skin. They aid in flight, thermal insulation, waterproofing and coloration that helps in communication and protection" xsd:string [Term] id: UBERON:0000023 name: wing def: "Appendage that is shaped in order to produce lift for flight through the air." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: grouping_class subset: uberon_slim synonym: "aliform appendage" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BTO:0001463 xref: EFO:0000885 xref: GAID:1217 xref: MAT:0000202 xref: MESH:D014921 xref: MIAA:0000202 xref: Wikipedia:Wing is_a: UBERON:0000026 ! appendage relationship: never_in_taxon NCBITaxon:118072 {source="bgee"} relationship: never_in_taxon NCBITaxon:186634 {source="bgee", seeAlso="Wikipedia:Flying_fish"} relationship: never_in_taxon NCBITaxon:314147 {source="bgee"} relationship: never_in_taxon NCBITaxon:6231 {source="bgee"} relationship: never_in_taxon NCBITaxon:7878 {source="bgee"} relationship: never_in_taxon NCBITaxon:8292 {notes="we do not consider flying frogs to have wings", source="bgee"} relationship: never_in_taxon NCBITaxon:91561 {source="bgee"} relationship: never_in_taxon NCBITaxon:9254 {source="bgee"} relationship: never_in_taxon NCBITaxon:9263 {source="bgee"} relationship: never_in_taxon NCBITaxon:9443 {source="bgee"} relationship: never_in_taxon NCBITaxon:9606 property_value: has_relational_adjective "alar" xsd:string property_value: taxon_notes "This class is not monophyletic. See also: GO:0007629" xsd:string [Term] id: UBERON:0000024 name: forelimb wing def: "Forelimb that is used to produce lift for flight through the air." [http://orcid.org/0000-0002-6601-2165] comment: Examples: bat wing, bird wing is_a: UBERON:0000023 ! wing is_a: UBERON:0002102 ! forelimb [Term] id: UBERON:0000025 name: tube def: "Any hollow cylindrical anatomical structure containing a lumen through which substances are transported." [http://orcid.org/0000-0002-6601-2165] synonym: "anatomical tube" EXACT [] synonym: "duct" NARROW [] xref: galen:Tube is_a: UBERON:0004111 ! anatomical conduit property_value: curator_notes "not every anatomical conduit is a tube - for example, a bone foramen is an opening in the bone, and there is no distinct separate tube structure. Tubes may transport large mixed objects (for example, a bolus of food in the digestive tube) or they may transport the secretions of a single gland (for example, gland ducts)" xsd:string property_value: has_relational_adjective "tubular" xsd:string [Term] id: UBERON:0000026 name: appendage def: "Major subdivision of an organism that protrudes from the body[DOS, CARO]." [CARO:DOS] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "appendages" RELATED OMO:0003004 [XAO:0000218] synonym: "extremitaet" RELATED [BTO:0001492] synonym: "extremity" RELATED [] synonym: "limbs/digits/tail" RELATED [MP:0000001] xref: AEO:0000193 xref: BILA:0000018 xref: BTO:0001492 xref: CARO:0010003 xref: EFO:0000799 xref: EHDAA2:0003193 xref: EMAPA:37283 {source="MA:th"} xref: EV:0100155 xref: FBbt:00007000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000144 xref: MAT:0000023 xref: MESH:D005121 xref: MIAA:0000023 xref: NCIT:C61460 xref: UMLS:C0598782 {source="ncithesaurus:Appendage"} xref: VSAO:0000075 xref: Wikipedia:Appendage xref: XAO:0000218 is_a: UBERON:0000475 ! organism subdivision property_value: external_definition "An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA][BILA:0000018]." xsd:string {source="BILA:0000018"} property_value: external_definition "Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified][GO:0048736]." xsd:string {source="GO:0048736"} property_value: has_relational_adjective "appendicular" xsd:string property_value: taxon_notes "this is currently a subtype of organism subdivision - which would exclude feathers" xsd:string [Term] id: UBERON:0000029 name: lymph node def: "Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph." [BTO:0000784] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "lymph gland" RELATED [VHOG:0001273] synonym: "nodus lymphaticus" RELATED OMO:0003011 [Wikipedia:Lymph_node] xref: BTO:0000784 xref: CALOHA:TS-0579 xref: EFO:0000872 xref: EMAPA:35523 xref: EV:0100050 xref: FMA:5034 xref: GAID:947 xref: galen:Lymphnode xref: MA:0000139 xref: MAT:0000442 xref: MESH:D008198 xref: NCIT:C12745 xref: NCIT:C33027 xref: SCTID:181756000 xref: TAO_RETIRED:0005318 xref: UMLS:C0024204 {source="ncithesaurus:Lymph_Node"} xref: VHOG:0001273 xref: Wikipedia:Lymph_node xref: ZFA_RETIRED:0005318 is_a: UBERON:0005057 ! immune organ relationship: develops_from UBERON:0034953 ! embryonic lymph sac relationship: part_of UBERON:0002465 ! lymphoid system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png" xsd:anyURI property_value: homology_notes "Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001273", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.630", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/650" xsd:anyURI [Term] id: UBERON:0000030 name: lamina propria def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria] subset: uberon_slim synonym: "lamina propria mucosa" EXACT [] synonym: "lamina propria mucosae" EXACT [] synonym: "tunica propria" RELATED [BTO:0002330] xref: BTO:0002330 xref: FMA:62517 xref: NCIT:C32918 xref: SCTID:298225002 xref: UMLS:C1179187 {source="ncithesaurus:Lamina_Propria"} xref: Wikipedia:Lamina_propria is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000344 ! mucosa property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fb/GI_Organization.svg" xsd:anyURI [Term] id: UBERON:0000031 name: lamina propria of trachea def: "A lamina propria that is part of a respiratory airway." [OBOL:automatic] synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria of windpipe" EXACT [OBOL:automatic] synonym: "trachea lamina propria" EXACT [] synonym: "trachea lamina propria mucosa" EXACT [OBOL:automatic] synonym: "trachea lamina propria mucosae" EXACT [OBOL:automatic] synonym: "tracheal lamina propria" EXACT [] synonym: "windpipe lamina propria" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosa" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:35877 xref: FMA:265157 xref: MA:0001858 xref: NCIT:C49305 xref: UMLS:C1710457 {source="ncithesaurus:Trachea_Lamina_Propria"} is_a: UBERON:0004779 ! respiratory system lamina propria relationship: part_of UBERON:0000379 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! tracheal mucosa [Term] id: UBERON:0000032 name: obsolete cranial structure comment: obsoleted as it was a grouping class that served no purpose is_obsolete: true [Term] id: UBERON:0000033 name: head def: "The head is the anterior-most division of the body [GO]." [GO:0060322, Wikipedia:Head] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "adult head" NARROW [] synonym: "cephalic area" RELATED [SPD:0000016] synonym: "head (volume)" EXACT [FMA:7154] xref: AAO:0010335 xref: AEO:0000106 xref: BILA:0000115 xref: BIRNLEX:1230 xref: BTO:0000282 xref: CALOHA:TS-0436 xref: EFO:0000964 xref: EHDAA2:0003106 xref: EMAPA:31858 xref: FMA:7154 xref: GAID:61 xref: galen:Head xref: HAO:0000397 xref: MA:0000023 xref: MAT:0000294 xref: MESH:D006257 xref: MIAA:0000294 xref: NCIT:C12419 xref: SCTID:302548004 xref: SPD:0000016 xref: TAO:0001114 xref: TGMA:0000002 xref: UMLS:C0018670 {source="ncithesaurus:Head", source="BIRNLEX:1230"} xref: VHOG:0001644 xref: WBbt:0005739 xref: Wikipedia:Head xref: XAO:0003024 is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: mutually_spatially_disjoint_with UBERON:0000948 ! heart relationship: part_of UBERON:0007811 ! craniocervical region property_value: external_definition "Organism subdivision that is the part of the body consisting of the cranial and pharyngeal regions.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010335", ontology="AAO", source="AAO:BJB"} property_value: external_definition "Organism subdivision which is the part of the body which consists of the cranial and pharygeal regions.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001114", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "Vertebrate evolution has been characterized by a fresh and vast array of cranial structures that collectively form the head.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001644", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.82", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000035 name: primary ovarian follicle def: "An ovarian follicle that has one layer of granulosa cells." [GO:0001545, GOC:mtg_mpo, http://ovary.stanford.edu] subset: human_reference_atlas subset: pheno_slim synonym: "folliculus ovaricus primarius" EXACT OMO:0003011 [FMA:18634] synonym: "ovary primary follicle" EXACT [EMAPA:35631, MA:0002907] synonym: "preantral follicle of ovary" RELATED [] synonym: "primary egg follicle" RELATED [] synonym: "primary follicle" RELATED [EMAPA:35631] synonym: "primary follicle of ovary" EXACT [FMA:18634] synonym: "primary ovarian follicle" EXACT [FMA:18634] xref: BTO:0000410 xref: EMAPA:35631 xref: FMA:18634 xref: MA:0002907 xref: SCTID:258665002 is_a: UBERON:0001305 ! ovarian follicle relationship: develops_from UBERON:0003981 ! primordial ovarian follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000036 name: secondary ovarian follicle def: "A maturing ovarian follicle that has two more more layers of granulosa cells, up to the onset of antrum formation." [GO:0001546, http://ovary.stanford.edu, http://www.repropedia.org/secondary-ovarian-follicle] subset: human_reference_atlas subset: pheno_slim synonym: "antral follicle of ovary" RELATED [FMA:18637] synonym: "folliculus ovaricus secondarius" EXACT [] synonym: "ovary secondary follicle" EXACT [MA:0002908] synonym: "pre-antral follicle" EXACT [GO:0001546] synonym: "pre-ovulatory follicle" RELATED [EMAPA:30777] synonym: "preantral follicle" EXACT [GO:0001546] synonym: "secondary egg follicle" RELATED [] synonym: "secondary follicle" RELATED [EMAPA:35632] synonym: "secondary follicle of ovary" EXACT [] xref: EMAPA:35632 xref: FMA:18637 xref: MA:0002908 is_a: UBERON:0001305 ! ovarian follicle relationship: develops_from UBERON:0000035 ! primary ovarian follicle relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "consider adopting distinction in MA" xsd:string [Term] id: UBERON:0000037 name: tertiary ovarian follicle def: "A follicle that has reached the most mature stage of folliculogenesis, characterized by the presence of the antrum." [http://orcid.org/0000-0002-6601-2165, http://www.repropedia.org/antral-follicle] subset: pheno_slim subset: uberon_slim synonym: "antral follicle" BROAD [] synonym: "antral ovarian follicle" EXACT [GO:0001547] synonym: "folliculi ovarici vesiculosi" EXACT OMO:0003011 [FMA:18641, FMA:TA] synonym: "folliculus ovaricus tertiarius" EXACT [] synonym: "folliculus ovaricus tertiarius (vesiculosus)" EXACT [FMA:18641] synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT [] synonym: "Graafian follicle" EXACT [http://www.repropedia.org/antral-follicle] synonym: "ovary antral follicle" EXACT [http://www.repropedia.org/antral-follicle, MA:0002909] synonym: "tertiary egg follicle" RELATED [] synonym: "tertiary follicle of ovary" EXACT [FMA:18641, http://www.repropedia.org/antral-follicle] synonym: "vesicular follicle of ovary" EXACT [FMA:18641] synonym: "vesicular ovarian follicle" EXACT [FMA:18641] xref: EMAPA:30763 xref: FMA:18641 xref: MA:0002909 xref: NCIT:C32692 xref: SCTID:362261008 xref: UMLS:C0600225 {source="ncithesaurus:Graafian_Follicle"} is_a: UBERON:0001305 ! ovarian follicle relationship: develops_from UBERON:0000036 ! secondary ovarian follicle property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG" xsd:anyURI [Term] id: UBERON:0000038 name: follicular fluid def: "The fluid surrounding the ovum and granulosa cells in the ovarian follicle." [ISBN:145114847X, MESH:D015571, Wikipedia:Follicular_fluid] subset: human_reference_atlas subset: uberon_slim synonym: "antral fluid, ovarian follicle" RELATED [] synonym: "liquor follicularis" EXACT [FMA:18665] synonym: "liquor folliculi" EXACT OMO:0003011 [] synonym: "liquor folliculi" RELATED OMO:0003011 [Wikipedia:Follicular_fluid] synonym: "ovarian follicular fluid" RELATED [BTO:0004383] synonym: "ovary follicle fluid" EXACT [MA:0002511] synonym: "ovary follicular fluid" RELATED [BTO:0004383] xref: BTO:0004383 xref: CALOHA:TS-0728 xref: FMA:18665 xref: GAID:372 xref: MA:0002511 xref: MESH:D015571 xref: NCIT:C52556 xref: UMLS:C1709369 {source="ncithesaurus:Ovarian_Follicle_Fluid"} xref: Wikipedia:Follicular_fluid is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0001305 ! ovarian follicle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png" xsd:anyURI property_value: structure_notes "The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes and is rich in hyaluronic acid." xsd:string property_value: taxon_notes "Generally, larger species such as ovine, equine, porcine, human, and bovine have larger follicles, with the fluid comprising a substantial proportion of the volume of the follicles at ovulation (estimated at >95% in bovine [3]). Smaller species such as rats and mice have smaller follicles with fractionally less follicular fluid[20164441]" xsd:string [Term] id: UBERON:0000039 name: follicular antrum def: "Region of ovarian follicle filled with follicular fluid." [Wikipedia:Follicular_antrum] subset: human_reference_atlas subset: uberon_slim synonym: "antral cavity" EXACT [FMA:18675] synonym: "antrum folliculare" EXACT [FMA:18675] synonym: "antrum follicularum" RELATED OMO:0003011 [Wikipedia:Follicular_antrum] synonym: "ovarian follicle antrum" EXACT [GO:0001548] xref: EMAPA:37867 {source="MA:th"} xref: FMA:18675 xref: Wikipedia:Follicular_antrum is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001305 ! ovarian follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000040 name: Leydig's organ def: "A hemopoietic organ found in elasmobranchs. Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus." [http://www.elasmo-research.org/education/topics/p_blood_cells.htm, Wikipedia:Leydig's_organ] comment: Phenotype notes: Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus). Structure notes: divided into dorsal and ventral patches, gradation varies between species. Lacks erythroblasts and fat cells[Honma 1983] subset: uberon_slim xref: Wikipedia:Leydig's_organ is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0005178 ! thoracic cavity element relationship: never_in_taxon NCBITaxon:7863 {source="Wikipedia"} property_value: taxon_notes "Found in elasmobranchs (sharks and rays) but with some exceptions." xsd:string [Term] id: UBERON:0000041 name: odontode scale def: "Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000079] subset: uberon_slim synonym: "dermal denticle" EXACT [Wikipedia:Dermal_denticle] synonym: "odontode scale" EXACT [VSAO:0000079] synonym: "placoid scale" EXACT [VSAO:curator] xref: VSAO:0000079 xref: Wikipedia:Dermal_denticle is_a: UBERON:0007380 {source="VSAO"} ! dermal scale is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: present_in_taxon NCBITaxon:119203 relationship: present_in_taxon NCBITaxon:7777 property_value: editor_note "TODO check dentin def" xsd:string property_value: external_definition "Small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water[WP][Wikipedia:Dermal_denticle]." xsd:string {source="Wikipedia:Dermal_denticle"} property_value: taxon_notes "Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone." xsd:string [Term] id: UBERON:0000042 name: serous membrane def: "Multi-tissue structure that is comprised of a secretory epithelial layer (mesothelium) and a connective tissue layer." [https://github.com/obophenotype/uberon/issues/86, Wikipedia:Serous_membrane] subset: uberon_slim subset: vertebrate_core synonym: "serosa" RELATED [Wikipedia:Serous_membrane] synonym: "tunica serosa" EXACT OMO:0003011 [FMA:9581] synonym: "wall of serous sac" EXACT [FMA:9581] xref: FMA:9581 xref: GAID:19 xref: MESH:D012704 xref: NCIT:C13169 xref: SCTID:362878009 xref: TAO:0005425 xref: UMLS:C0036760 {source="ncithesaurus:Serosa"} xref: Wikipedia:Serous_membrane xref: ZFA:0005425 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000060 ! anatomical wall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI property_value: external_definition "A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005425", ontology="TAO", source="Wikipedia:Serous_membrane"} property_value: external_definition "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]" xsd:string {source="Wikipedia:Serous_membrane"} property_value: external_ontology_notes "in FMA, SM = mesothelium + connective tissue. It excludes the cavity. Serous sac = SM + cavity. Note that the SM is a subtype of wall in FMA." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000043 name: tendon def: "Dense regular connective tissue that connects muscle to bone[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000073, Wikipedia:Tendon] subset: pheno_slim subset: uberon_slim synonym: "sinew" RELATED [Wikipedia:Tendon] synonym: "tendo" RELATED OMO:0003011 [Wikipedia:Tendon] xref: AEO:0000091 xref: BTO:0001356 xref: CALOHA:TS-1021 xref: EHDAA2:0003091 xref: EMAPA:35854 xref: EV:0100149 xref: FMA:9721 xref: GAID:276 xref: galen:Tendon xref: MA:0000115 xref: MESH:D013710 xref: NCIT:C13045 xref: SCTID:256667004 xref: UMLS:C0039508 {source="ncithesaurus:Tendon"} xref: VHOG:0001286 xref: VSAO:0000073 xref: Wikipedia:Tendon xref: XAO:0000173 xref: ZFA:0005647 is_a: UBERON:0007846 {source="VSAO"} ! dense regular connective tissue relationship: part_of UBERON:0002204 {source="OG"} ! musculoskeletal system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg" xsd:anyURI property_value: external_definition "Dense regular connective tissue that connects muscle to bone.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000073", ontology="VSAO", source="PSPUB:0000170"} property_value: external_ontology_notes "in FMA, tendon is an organ component that with parts dense-irregular-connective-tissue of tendon and dense-irregular-connective-tissue of tendon sheath; we follow VSAO in making it a subtype of the former. In VSAO tendons connect muscle to bone; in WP the def states integument (e.g. auricular muscles) - but JB confirms this is not actually tendon but aponeurosis" xsd:string {external_ontology="FMA"} property_value: homology_notes "Phylogenetically, tendinous tissue first appears in the invertebrate chordate Branchiostoma as myosepta. This two-dimensional array of collagen fibers is highly organized, with fibers running along two primary axes. In hagfish the first linear tendons appear and the myosepta have developed specialized regions with unidirectional fiber orientation - a linear tendon within the flat sheet of myoseptum.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001286", ontology="VHOG", source="DOI:10.1016/S1095-6433(02)00241-6 Summers AP, Koob TJ, The evolution of tendon - morphology and material properties. Comparative Biochemistry and Physiology-Part A: Molecular and Integrative Physiology (2002)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000044 name: dorsal root ganglion alt_id: UBERON:0026602 def: "Sensory ganglia located on the dorsal spinal roots within the vertebral column. The spinal ganglion cells are pseudounipolar. The single primary branch bifurcates sending a peripheral process to carry sensory information from the periphery and a central branch which relays that information to the spinal cord or brain. (MSH) * ganglion found on the posterior root of each spinal nerve, composed of the unipolar nerve cell bodies of the sensory neurons of the nerve. (CSP)." [BIRNLEX:2596] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "dorsal root ganglia" RELATED OMO:0003004 [] synonym: "dorsal root ganglion" EXACT [BTO:0001264] synonym: "DRG" RELATED OMO:0003000 [] synonym: "ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "ganglion sensorium nervi spinalis" RELATED OMO:0003011 [BTO:0001264, Wikipedia:Dorsal_root_ganglion] synonym: "ganglion spinale" RELATED [BTO:0001264] synonym: "ganglion spinalis" EXACT [FMA:5888] synonym: "posterior root ganglion" RELATED [EMAPA:16668] synonym: "spinal ganglion" EXACT [FMA:5888] synonym: "spinal ganglion part of peripheral nervous system" EXACT [BIRNLEX:2598] xref: AAO:0011032 xref: BIRNLEX:2596 xref: BIRNLEX:2598 xref: BTO:0001264 xref: CALOHA:TS-0954 xref: EFO:0000900 xref: EHDAA2:0000418 xref: EHDAA2:0001897 xref: EHDAA:2899 xref: EMAPA:16667 xref: EMAPA:16668 xref: EMAPA:18372 xref: EV:0100373 xref: FMA:5888 xref: MA:0000231 xref: MA:0000232 xref: MAT:0000162 xref: MESH:D005727 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000162 xref: NCIT:C12462 xref: SCTID:244455004 xref: TAO:0000200 xref: UMLS:C0017070 {source="ncithesaurus:Dorsal_Root_Ganglion", source="BIRNLEX:2596"} xref: VHOG:0000222 xref: Wikipedia:Dorsal_root_ganglion xref: XAO:0000210 xref: ZFA:0000200 is_a: UBERON:0001800 {source="MA"} ! sensory ganglion relationship: develops_from UBERON:0003083 {source="DOI:10.1101/gr.157586.113", source="ZFA", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! trunk neural crest relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/71/DRG_Chicken_e7.jpg" xsd:anyURI property_value: development_notes "The sensory ganglia of spinal nerves arise only from the neural crest, whereas many sensory ganglia of the 'dorsal' cranial nerves arise from epibranchial placodes as well as the neural crest[DOI:10.1093/icb/icn065]" xsd:string property_value: external_definition "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000200", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "MA and EMAPA introduce distinct classes for what appears to be the same thing" xsd:string {external_ontology="FMA"} property_value: homology_notes "From comparative analyses of craniate brains, a morphotype of the brain in the earliest craniate stock can be constructed. In marked contrast to cephalochordates, the ancestral craniate morphotype had a plethora of unique features, which included a telencephalon with pallial and subpallial parts, paired olfactory bulbs with substantial projections to most or all of the telencephalic pallium, paired lateral eyes and ears, a lateral line system for both electroreception and mechanoreception, spinal cord dorsal root ganglia, and an autonomic nervous system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000222", ontology="VHOG", source="DOI:10.1002/1097-0185(20000615)261:3<111::AID-AR6>3.0.CO;2-F Butler AB, Chordate evolution and the origin of craniates: An old brain in a new head. AnaT Rec (New Anat) (2000)", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd:string [Term] id: UBERON:0000045 name: ganglion def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Ganglion] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglia" RELATED [] synonym: "neural ganglion" RELATED [BTO:0000497] xref: AAO:0010426 xref: AEO:0000135 xref: BAMS:G xref: BTO:0000497 xref: CALOHA:TS-0397 xref: EFO:0000899 xref: EHDAA2:0003135 xref: EHDAA:2897 xref: EHDAA:4662 xref: EHDAA:5621 xref: EHDAA:918 xref: EMAPA:32846 xref: EV:0100372 xref: FMA:5884 xref: MA:0002406 xref: MAT:0000207 xref: MAT:0000343 xref: MESH:D005724 xref: MIAA:0000207 xref: MIAA:0000343 xref: NCIT:C12719 xref: NLXANAT:100302 xref: TAO:0000190 xref: TGMA:0001016 xref: UMLS:C0017067 {source="ncithesaurus:Ganglion"} xref: VHOG:0000156 xref: WBbt:0005189 xref: Wikipedia:Ganglion xref: XAO:0000209 xref: ZFA:0000190 is_a: UBERON:0000061 {source="https://github.com/obophenotype/uberon/issues/2495#issuecomment-1187364719"} ! anatomical structure relationship: immediate_transformation_of UBERON:0003869 {source="Bgee:AN"} ! presumptive ganglion relationship: part_of UBERON:0001016 ! nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system." xsd:string property_value: external_definition "A ganglion is a cluster of neurons. It is part of a nervous system. It may include glial cells. The neurons are arranged in a specific constellation: neuronal somata are concentrated at the surface, thus forming a cell cortex, and neurites are concentrated in the centre of the ganglion to form the neuropil. A ganglion is a distinct unit but several ganglia may be anterio-posteriorly joined by connectives or transversally by commissures" xsd:string {source="PMID:21062451"} property_value: external_definition "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010426", ontology="AAO", source="AAO:EJS"} property_value: external_definition "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000190", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Subdivision of nervous system which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord. Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion (adapted from Foundational Model of Anatomy)[NLXANAT:100302]." xsd:string {source="NLXANAT:100302"} property_value: has_relational_adjective "ganglionic" xsd:string property_value: homology_notes "Cranial sensory placodes are focused areas of the head ectoderm of vertebrates that contribute to the development of the cranial sense organs and their associated ganglia. Placodes have long been considered a key character of vertebrates, and their evolution is proposed to have been essential for the evolution of an active predatory lifestyle by early vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000156", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.021 Mazet F, Hutt JA, Milloz J, Millard J, Graham A, Shimeld SM, Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes. Developmental Biology (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000046 name: stemma def: "Eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light." [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma] subset: uberon_slim synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes] xref: Wikipedia:Stemma is_a: UBERON:0000047 ! simple eye relationship: never_in_taxon NCBITaxon:7742 [Term] id: UBERON:0000047 name: simple eye def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] subset: grouping_class subset: uberon_slim xref: TGMA:0000729 xref: Wikipedia:Eye#Simple_eyes is_a: UBERON:0000970 ! eye [Term] id: UBERON:0000048 name: pinhole eye def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye] subset: grouping_class subset: uberon_slim xref: Wikipedia:Pinhole_eye is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000049 name: spherical lensed eye def: "Simple eye that consists of a lens of one refractive index." [Wikipedia:Eye#Spherical_lensed_eye] subset: grouping_class is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000050 name: simple eye with multiple lenses def: "Simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope." [Wikipedia:Eye#Multiple_lenses] subset: grouping_class subset: uberon_slim xref: Wikipedia:Eye#Multiple_lenses is_a: UBERON:0000047 ! simple eye relationship: never_in_taxon NCBITaxon:7742 [Term] id: UBERON:0000051 name: fornix of vagina def: "The deepest portions of the vagina, extending into the recesses created by the vaginal portion of cervix[WP,unvetted]." [Wikipedia:Vaginal_fornix] subset: uberon_slim synonym: "fornix" BROAD [] synonym: "fornix vaginae" EXACT OMO:0003011 [FMA:19985, FMA:TA] synonym: "vaginal fornices" RELATED OMO:0003004 [] synonym: "vaginal fornix" EXACT [] xref: FMA:19985 xref: NCIT:C33848 xref: SCTID:245475003 xref: UMLS:C0227794 {source="ncithesaurus:Vaginal_Fornix"} xref: Wikipedia:Vaginal_fornix is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000996 ! vagina property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI [Term] id: UBERON:0000052 name: fornix of brain def: "A C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM)." [BIRNLEX:705] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brain fornix" EXACT [] synonym: "cerebral fornix" EXACT [] synonym: "forebrain fornix" EXACT [FMA:61965] synonym: "fornix" BROAD [] synonym: "fornix (column and body of fornix)" RELATED [FMA:61965] synonym: "fornix cerebri" RELATED OMO:0003011 [NeuroNames:268] synonym: "fornix hippocampus" RELATED [] synonym: "fornix of neuraxis" EXACT [FMA:83865] synonym: "hippocampus fornix" RELATED [] synonym: "neuraxis fornix" EXACT [FMA:83865] xref: BAMS:f xref: BIRNLEX:705 xref: DHBA:10576 xref: DMBA:17767 xref: EMAPA:35352 xref: FMA:61965 {notes="inferred"} xref: FMA:83865 xref: HBA:9249 xref: MA:0002747 xref: NCIT:C32289 xref: neuronames:268 {source="BIRNLEX:705"} xref: SCTID:279302004 xref: UMLS:C0152334 {source="BIRNLEX:705"} xref: UMLS:C0458370 {source="ncithesaurus:Cerebral_Fornix"} xref: Wikipedia:fornix_of_brain is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0000053 name: macula lutea def: "An oval area in the retina, usually located temporal to the posterior pole of the eye and slightly below the level of the optic disk. It is characterized by the presence of a yellow pigment diffusely permeating the inner layers, contains the fovea centralis in its center, and provides the best phototopic visual acuity. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)." [MESH:A09.371.729.522] subset: pheno_slim subset: uberon_slim synonym: "macula" RELATED [] synonym: "macula flava retinae" RELATED [BTO:0003015] synonym: "macula retinae" RELATED [BTO:0003015] synonym: "maculae" RELATED [] xref: BIRNLEX:2540 xref: BTO:0003015 xref: EMAPA:36516 xref: EV:0100349 xref: FMA:58637 xref: GAID:909 xref: MA:0001306 xref: MESH:D008266 xref: NCIT:C26464 xref: NCIT:C33044 xref: SCTID:362517001 xref: UMLS:C0450295 {source="ncithesaurus:Macula_Lutea", source="BIRNLEX:2540"} xref: UMLS:C1284755 {source="BIRNLEX:2540"} xref: Wikipedia:Macula_of_retina is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000966 ! retina property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png" xsd:anyURI [Term] id: UBERON:0000054 name: macula def: "Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified]." [MESH:A09.246.631.909.625.125] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "acoustic macula" RELATED [MESH:A09.246.631.909.625.125] synonym: "acoustic maculae" RELATED OMO:0003004 [MESH:A09.246.631.909.625.125] synonym: "macula" EXACT [] synonym: "maculae" EXACT OMO:0003004 [] synonym: "sensory macula" EXACT [ZFA:0000386] synonym: "sensory patch" EXACT [ZFA:0000386] xref: GAID:777 xref: MESH:D008267 xref: TAO:0000386 xref: ZFA:0000386 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001846 ! internal ear relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "this refers to the inner ear structure, not the macula of the retina. We follow ZFA in including a grouping class for the macula of utricle and sacule" xsd:string property_value: external_definition "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000386", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "macular" xsd:string [Term] id: UBERON:0000055 name: vessel def: "A tubular structure that contains, conveys body fluid, such as blood or lymph." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class subset: human_reference_atlas subset: pheno_slim is_a: UBERON:0004111 ! anatomical conduit relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000056 name: ureter def: "Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs." [GO:0090189, Wikipedia:Ureter] subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "metanephric duct" RELATED [ISBN:0073040584, VHOG:0000605] xref: AAO:0010254 xref: BTO:0001409 xref: CALOHA:TS-1084 xref: EFO:0000930 xref: EHDAA2:0002139 xref: EHDAA:9341 xref: EMAPA:17950 xref: EV:0100097 xref: FMA:9704 xref: GAID:438 xref: galen:Ureter xref: MA:0000378 xref: MAT:0000120 xref: MESH:D014513 xref: MIAA:0000120 xref: NCIT:C12416 xref: SCTID:302511008 xref: UMLS:C0041951 {source="ncithesaurus:Ureter"} xref: VHOG:0000605 xref: Wikipedia:Ureter xref: XAO:0000144 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0006555 ! excretory tube is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0005081 {source="GO"} ! ureter ureteric bud relationship: part_of UBERON:0036295 ! renal pelvis/ureter relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg" xsd:anyURI property_value: external_definition "Anatomical structure consisting of long narrow duct which carries urine from the kidney to the urinary bladder.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010254", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The duct of amniotes that carries urine from a metanephric kidney to the urinary bladder. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-29, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000605", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "ureteral" xsd:string property_value: has_relational_adjective "ureteric" xsd:string property_value: homology_notes "The first embryonic hint of a metanephros is the formation of the metanephric duct that appears as a ureteric diverticulum arising at the base of preexisting mesonephric duct. The ureteric diverticulum grows dorsally into the posterior region of the nephric ridge. Here it enlarges and stimulates the growth of metanephric tubules that come to make up the metanephric kidney. The metanephros becomes the adult kidney of amniotes, and the metanephric duct is usually called the ureter.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000605", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.543", source="http://bgee.unil.ch/"} property_value: structure_notes "in humans, consists of adventitial, muscular and mucoa layers" xsd:string [Term] id: UBERON:0000057 name: urethra def: "The fibromuscular tubular canal through which urine is discharged from the bladder to the exterior via the external urinary meatus; in males, the urethra is joined by the ejaculatory ducts and serves as a passageway for semen during ejaculation, as well as a canal for urine during voiding; in females, the urethra is shorter and emerges above the vaginal opening." [MGI:anna, MP:0000537] subset: efo_slim subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim xref: BTO:0001426 xref: CALOHA:TS-1132 xref: EFO:0000931 xref: EMAPA:30901 xref: EV:0100099 xref: FMA:19667 xref: GAID:390 xref: galen:Urethra xref: MA:0000379 xref: MAT:0000121 xref: MESH:D014521 xref: MIAA:0000121 xref: NCIT:C12417 xref: SCTID:302513006 xref: UMLS:C0041967 {source="ncithesaurus:Urethra"} xref: VHOG:0001264 xref: Wikipedia:Urethra xref: XAO:0000153 is_a: UBERON:0000062 ! organ is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0000164 {notes="pelvic part of UG sinus gives rise to prostatic and membranous parts of urethra", source="Wikipedia"} ! primitive urogenital sinus relationship: develops_from UBERON:0013241 {source="Wikipedia"} ! embryonic urethral groove relationship: part_of UBERON:0001556 ! lower urinary tract property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI property_value: has_relational_adjective "urethral" xsd:string property_value: taxon_notes "In human males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening." xsd:string [Term] id: UBERON:0000058 name: duct def: "A tubular structure that transports secreted or excreted substances." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm#ducts] subset: grouping_class synonym: "anatomical duct" EXACT [] synonym: "ducts" RELATED OMO:0003004 [XAO:0004000] synonym: "exocrine duct" NARROW [] synonym: "exocrine gland duct" NARROW [] xref: AAO:0011123 xref: FBbt:00100314 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:30320 xref: galen:Duct xref: NCIT:C12948 xref: SCTID:91726008 xref: TAO:0005171 xref: UMLS:C0687028 {source="ncithesaurus:Duct"} xref: Wikipedia:Duct_(anatomy) xref: XAO:0004000 xref: ZFA:0005171 is_a: UBERON:0000063 ! organ subunit property_value: external_definition "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA:0005171]." xsd:string {source="ZFA:0005171"} property_value: external_ontology_notes "Most ducts, but not all, are exocrine gland ducts. Some ontologies classify structures such as the oviduct here." xsd:string [Term] id: UBERON:0000059 name: large intestine def: "A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]." [ISBN:0073040584, Wikipedia:Large_intestine_(anatomy)] subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim synonym: "intestinum crassum" RELATED [BTO:0000706] xref: AAO:0010396 xref: BTO:0000706 xref: CALOHA:TS-1306 xref: EFO:0000840 xref: EMAPA:19252 xref: EV:0100077 xref: FMA:7201 xref: GAID:306 xref: galen:LargeIntestine xref: MA:0000333 xref: MESH:D007420 xref: MIAA:0000046 xref: NCIT:C12379 xref: SCTID:181254001 xref: UMLS:C0021851 {source="ncithesaurus:Large_Intestine"} xref: VHOG:0000054 xref: Wikipedia:Large_intestine_(anatomy) xref: XAO:0000131 is_a: UBERON:0004921 {source="cjm"} ! subdivision of digestive tract is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0004907 ! lower digestive tract relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: homology_notes "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000054", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.566", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000060 name: anatomical wall alt_id: UBERON:0009915 def: "Organ component adjacent to an organ cavity and which consists of a maximal aggregate of organ component layers." [FMA:82482] subset: upper_level synonym: "organ wall" RELATED [FMA:82482] synonym: "wall" BROAD [] synonym: "wall of organ" EXACT [FMA:82482] xref: FMA:82482 xref: galen:Wall is_a: UBERON:0000064 ! organ part property_value: external_ontology_notes "in FMA, serosa is a wall" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000061 name: anatomical structure def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: common_anatomy subset: human_reference_atlas subset: upper_level synonym: "biological structure" EXACT [] synonym: "connected biological structure" EXACT [CARO:0000003] xref: AAO:0010825 xref: AEO:0000003 xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 xref: FBbt:00007001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:305751 xref: FMA:67135 xref: GAID:781 xref: HAO:0000003 xref: http://dbpedia.org/ontology/AnatomicalStructure xref: MA:0003000 xref: MESH:D000825 xref: SCTID:362889002 xref: TAO:0000037 xref: TGMA:0001823 xref: VHOG:0001759 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000062 name: organ def: "Anatomical structure that performs a specific function or group of functions [WP]." [Wikipedia:Organ_(anatomy)] subset: common_anatomy subset: upper_level synonym: "anatomical unit" RELATED [] synonym: "body organ" RELATED [] synonym: "element" RELATED [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:4 xref: CARO:0020004 xref: EFO:0000634 xref: EMAPA:35949 xref: ENVO:01000162 xref: FMA:67498 xref: MA:0003001 xref: NCIT:C13018 xref: SCTID:272625005 xref: UMLS:C0178784 {source="ncithesaurus:Organ"} xref: WBbt:0003760 xref: Wikipedia:Organ_(anatomy) is_a: UBERON:0010000 ! multicellular anatomical structure relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} relationship: part_of UBERON:0000467 ! anatomical system relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: external_definition "Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions." xsd:string {source="GO:0048513"} property_value: external_ontology_notes "CARO v1 does not include a generic 'organ' class, only simple and compound organ. CARO v2 may include organ, see https://github.com/obophenotype/caro/issues/4" xsd:string [Term] id: UBERON:0000063 name: organ subunit def: "A part of an organ that constitutes a distinct modular sub-unit. In some cases, the organ may also contain other sub-units of identical or similar types, in other cases this may be a distinct entity." [http://orcid.org/0000-0002-6601-2165] subset: upper_level synonym: "organ region with fixed fiat boundary" RELATED [FMA:86140] synonym: "organ segment" RELATED [FMA:86140] synonym: "segment of organ" RELATED [FMA:86140] xref: FMA:86140 is_a: UBERON:0000064 ! organ part property_value: editor_note "FMA distinguishes segment from zone by whether the fiat boundaries are fixed/anchored (segments) or floating (zone). It's not completely clear how to apply this distinction" xsd:string property_value: external_definition "Organ region with one or more anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball." xsd:string {source="FMA:86140", version="3"} property_value: external_definition "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyebal." xsd:string {source="FMA:86140", version="1"} [Term] id: UBERON:0000064 name: organ part def: "A multicellular structure that is a part of an organ." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: efo_slim subset: non_informative subset: upper_level synonym: "cardinal organ part" EXACT [FMA:82472] synonym: "regional part of organ" RELATED [BIRNLEX:16] xref: AAO:0011124 xref: BIRNLEX:16 xref: EFO:0000635 xref: FMA:82472 xref: SCTID:113343008 xref: SCTID:91717005 is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000062 ! organ relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: curator_notes "currently defined in a very broad sense, may be replaced by more specific classes in the future" xsd:string [Term] id: UBERON:0000065 name: respiratory tract def: "Anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas xref: EHDAA2:0001606 xref: EHDAA:1568 xref: EHDAA:2219 xref: EMAPA:16737 xref: FMA:265130 xref: SCTID:361110005 xref: VHOG:0000393 is_a: UBERON:0001005 ! respiratory airway relationship: develops_from UBERON:0007026 {source="NCBIBook:NBK10107"} ! presumptive gut relationship: develops_from UBERON:0008947 ! respiratory primordium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000066 name: fully formed stage def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both sexually immature stage, and adult stage." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim synonym: "adult stage" BROAD [] synonym: "fully formed animal stage" EXACT [] synonym: "juvenile-adult stage" EXACT [] xref: BilaDO:0000004 xref: BtauDv:0000078 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BTO:0001043 xref: CfamDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ChirDv:0000014 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DpseDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DsimDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EcabDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0001272 xref: FBdv:00005369 xref: FcatDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000076 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000032 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0010000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000052 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000092 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OanaDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PpanDv:0000041 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000052 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000061 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000040 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000084 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: WBls:0000041 xref: XtroDO:0000084 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000092 ! post-embryonic stage property_value: seeAlso "https://github.com/obophenotype/uberon/issues/566" xsd:anyURI [Term] id: UBERON:0000067 name: obsolete embryo stage part def: "A stage that is part of the embryo stage." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "embryonic stage part" EXACT [] is_obsolete: true [Term] id: UBERON:0000068 name: embryo stage def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." [http://orcid.org/0000-0002-6601-2165] synonym: "embryogenesis" RELATED [] synonym: "embryonic stage" EXACT [] xref: AcarDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BilaDO:0000002 xref: BtauDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CfamDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ChirDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CporDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DpseDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DsimDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EcabDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EV:0300001 xref: FBdv:00005289 xref: FcatDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: FMA:72652 xref: GgalDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000045 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000042 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OanaDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OcunDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000000 xref: OGES:000022 xref: PpanDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SCTID:296280003 xref: SsalDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: WBls:0000003 xref: WBls:0000092 xref: WBls:0000102 xref: XAO:1000012 is_a: UBERON:0000105 ! life cycle stage [Term] id: UBERON:0000069 name: larval stage def: "A distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva] subset: efo_slim synonym: "ammocoete" NARROW SENSU [Wikipedia:Larva] synonym: "ammocoete stage" NARROW SENSU [Wikipedia:Larva] synonym: "bipinnaria" NARROW SENSU [Wikipedia:Larva] synonym: "bipinnaria stage" NARROW SENSU [Wikipedia:Larva] synonym: "caterpillar" NARROW SENSU [Wikipedia:Larva] synonym: "caterpillar stage" NARROW SENSU [Wikipedia:Larva] synonym: "glochidium" NARROW SENSU [Wikipedia:Larva] synonym: "glochidium stage" NARROW SENSU [Wikipedia:Larva] synonym: "grub" NARROW SENSU [Wikipedia:Larva] synonym: "grub stage" NARROW SENSU [Wikipedia:Larva] synonym: "larva" RELATED [] synonym: "larva stage" EXACT [] synonym: "leptocephalus" NARROW SENSU [Wikipedia:Larva] synonym: "leptocephalus stage" NARROW SENSU [Wikipedia:Larva] synonym: "maggot" NARROW SENSU [Wikipedia:Larva] synonym: "maggot stage" NARROW SENSU [Wikipedia:Larva] synonym: "metacestode" NARROW SENSU [BTO:0000859] synonym: "naiad, nymph" NARROW SENSU [Wikipedia:Larva] synonym: "naiad, nymph stage" NARROW SENSU [Wikipedia:Larva] synonym: "nauplius" NARROW SENSU [Wikipedia:Larva] synonym: "nauplius stage" NARROW SENSU [Wikipedia:Larva] synonym: "nymph" NARROW SENSU [Wikipedia:Larva] synonym: "nymph stage" NARROW SENSU [Wikipedia:Larva] synonym: "planula" NARROW SENSU [Wikipedia:Larva] synonym: "planula stage" NARROW SENSU [Wikipedia:Larva] synonym: "tornaria" NARROW SENSU [NCBITaxon:10219] synonym: "trochophore" NARROW SENSU [Wikipedia:Larva] synonym: "trochophore stage" NARROW SENSU [Wikipedia:Larva] synonym: "veliger" NARROW SENSU [Wikipedia:Larva] synonym: "veliger stage" NARROW SENSU [Wikipedia:Larva] synonym: "wriggler" NARROW SENSU [Wikipedia:Larva] synonym: "wriggler stage" NARROW SENSU [Wikipedia:Larva] synonym: "zoea" NARROW SENSU [Wikipedia:Larva] synonym: "zoea stage" NARROW SENSU [Wikipedia:Larva] xref: BTO:0000915 xref: BTO:0000954 xref: DpseDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DsimDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0001303 xref: MIAA:0000400 xref: OGES:000008 xref: SsalDv:0000039 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: Wikipedia:Larva xref: ZFS:0000048 is_a: UBERON:0000105 ! life cycle stage relationship: never_in_taxon NCBITaxon:32524 relationship: part_of UBERON:0000092 ! post-embryonic stage property_value: curator_notes "Uberon includes clade-specific subclasses, e.g. nematod larva" xsd:string property_value: taxon_notes "It is a misunderstanding that the larval form always reflects the group's evolutionary history. It could be the case, but often the larval stage has evolved secondarily, as in insects. In these cases the larval form might differ more from the group's common origin than the adult form" xsd:string {source="WP"} [Term] id: UBERON:0000070 name: pupal stage def: "A life cycle stage of holometabolous insects in which the organism is a pupa and starts with the larval-pupal apolysis and ends with pupal-adult apolysis." [https://github.com/obophenotype/uberon/issues/562, Wikipedia:Pupa] synonym: "aurelia stage" NARROW [NCBITaxon:37572, Wikipedia:Pupa] synonym: "chrysalides stage" NARROW [NCBITaxon:37572, Wikipedia:Pupa] synonym: "chrysalis stage" NARROW [NCBITaxon:37572, Wikipedia:Pupa] synonym: "pupa stage" EXACT [] xref: DpseDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DsimDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: FBdv:00005349 xref: Wikipedia:Pupa is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000092 ! post-embryonic stage property_value: seeAlso "https://github.com/obophenotype/uberon/issues/562" xsd:anyURI property_value: taxon_notes "The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago" xsd:string [Term] id: UBERON:0000071 name: death stage def: "End of the life of an organism." [XAO:0000437] subset: common_anatomy synonym: "death" RELATED [] xref: XAO:0000437 xref: XtroDO:0000085 is_a: UBERON:0000105 ! life cycle stage relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: external_ontology_notes "ncit:Death is an outcome" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0000072 name: proximo-distal subdivision of respiratory tract def: "An section of a respiratory tract." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: non_informative synonym: "respiratory tract" RELATED [MA:0000434] synonym: "subdivision of respiratory tract" RELATED [] xref: FMA:45660 xref: MA:0000434 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000065 ! respiratory tract relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole" xsd:string {external_ontology="MA"} [Term] id: UBERON:0000073 name: regional part of nervous system def: "Any part or collection of parts of the central or peripheral nervous system. Parts may span both CNS and PNS." [BIRNLEX:1157] subset: non_informative subset: upper_level synonym: "part of nervous system" EXACT [BIRNLEX:1157] xref: BIRNLEX:1157 xref: NCIT:C13040 xref: SCTID:25087005 xref: UMLS:C1518256 {source="ncithesaurus:Nervous_System_Part"} is_a: UBERON:0000481 ! multi-tissue structure relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: part_of UBERON:0001016 ! nervous system creation_date: 2009-06-18T09:00:04Z [Term] id: UBERON:0000074 name: renal glomerulus def: "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "glomerular capillary tuft" RELATED [ZFA:0001288] synonym: "glomerular tuft" RELATED INCONSISTENT [] synonym: "glomerulus" BROAD [] synonym: "glomerulus renis" RELATED OMO:0003011 [Wikipedia:Glomerulus] synonym: "Malphigian glomerulus" RELATED MISSPELLING [BTO:0000530] synonym: "Malpighian glomerulus" RELATED [http://medical-dictionary.thefreedictionary.com/malpighian+glomerulus] synonym: "Malpighian tuft" RELATED [http://medical-dictionary.thefreedictionary.com/malpighian+glomerulus] synonym: "renal corpuscle" RELATED INCONSISTENT [] synonym: "renal glomeruli" EXACT [TAO:0001288] xref: BTO:0000530 xref: CALOHA:TS-0862 xref: EFO:0003667 xref: EMAPA:28329 xref: EV:0100386 xref: FMA:15624 xref: MA:0001657 xref: MESH:D007678 xref: NCIT:C13250 xref: SCTID:362217000 xref: TAO:0001288 xref: UMLS:C0022663 {source="ncithesaurus:Glomerulus"} xref: Wikipedia:Glomerulus xref: ZFA:0001288 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: develops_from UBERON:0005749 ! glomerular tuft relationship: part_of UBERON:0001229 {source="FMA", source="MA"} ! renal corpuscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg" xsd:anyURI property_value: external_ontology_notes "ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. GUDMAP: 'Together, the Bowman's capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule?" xsd:string {external_ontology="ZFA"} creation_date: 2009-06-18T09:26:37Z [Term] id: UBERON:0000075 name: subdivision of skeletal system alt_id: UBERON:0010322 def: "Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] subset: non_informative synonym: "skeletal system part" RELATED [] synonym: "skeletal system subdivision" EXACT [FMA:85544] xref: FMA:85544 xref: galen:ComplexSkeletalStructure xref: NCIT:C34076 xref: SCTID:118966000 xref: UMLS:C1519343 {source="ncithesaurus:Skeletal_System_Part"} is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0001434 ! skeletal system [Term] id: UBERON:0000076 name: external ectoderm def: "The surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm." [MGI:anna, MP:0012532] subset: pheno_slim synonym: "surface (external) ectoderm" EXACT [] synonym: "surface ectoderm" EXACT [MP:0012532] xref: BTO:0006242 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001968 xref: EHDAA:1494 xref: EHDAA:350 xref: EHDAA:4784 xref: EHDAA:4790 xref: EHDAA:4796 xref: EHDAA:7860 xref: EMAPA:16096 xref: FMA:87656 xref: NCIT:C34309 xref: UMLS:C1515087 {source="ncithesaurus:Surface_Ectoderm"} xref: Wikipedia:External_ectoderm is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: mutually_spatially_disjoint_with UBERON:0002346 ! neurectoderm relationship: part_of UBERON:0000924 {source="EHDAA2"} ! ectoderm property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1d/Ectoderm.png" xsd:anyURI property_value: development_notes "(or external ectoderm) forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis" xsd:string property_value: editor_note "merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube)" xsd:string [Term] id: UBERON:0000077 name: mixed endoderm/mesoderm-derived structure def: "An anatomical structure that develops from the endoderm and the mesoderm." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004120 ! mesoderm-derived structure property_value: curator_notes "Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple" xsd:string [Term] id: UBERON:0000078 name: mixed ectoderm/mesoderm/endoderm-derived structure def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure property_value: curator_notes "Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple" xsd:string [Term] id: UBERON:0000079 name: male reproductive system def: "The organs associated with producing offspring in the gender that produces spermatozoa." [MP:0001145] subset: efo_slim subset: human_reference_atlas subset: pheno_slim synonym: "genitalia of male organism" EXACT [OBOL:automatic] synonym: "male genital organ" RELATED [BTO:0000082] synonym: "male genital system" EXACT [FMA:45664] synonym: "male genital tract" RELATED [] synonym: "male genitalia" EXACT [] synonym: "male genitals" EXACT [] synonym: "male organism genitalia" EXACT [OBOL:automatic] synonym: "male organism reproductive system" EXACT [OBOL:automatic] synonym: "male reproductive tract" RELATED [MA:0000396] synonym: "reproductive system of male organism" EXACT [OBOL:automatic] synonym: "systema genitale masculinum" RELATED [BTO:0000082] xref: BTO:0000082 xref: CALOHA:TS-1310 xref: EFO:0000970 xref: EHDAA2:0001054 xref: EHDAA:8136 xref: EMAPA:17968 xref: EV:0100101 xref: FBbt:00004927 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45664 xref: GAID:386 xref: HAO:0000505 xref: MA:0000396 xref: MESH:D005837 xref: NCIT:C12722 xref: SCTID:361340001 xref: TGMA:0000634 xref: UMLS:C0017422 {source="ncithesaurus:Male_Genitalia"} xref: UMLS:C1963704 {source="ncithesaurus:Male_Reproductive_System"} xref: VHOG:0000725 xref: Wikipedia:Male_reproductive_system_(human) xref: XAO:0000155 is_a: UBERON:0000990 ! reproductive system relationship: part_of UBERON:0003101 ! male organism relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: homology_notes "By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000725", ontology="VHOG", source="ISBN:978-0792383369 Lombardi J, Comparative vertebrate reproduction (1998) p.43", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000080 name: mesonephros def: "The second stage of the kidney. It serves as the main excretory organ of aquatic vertebrates and as a temporary embryonic kidney in higher vertebrates. It is composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros] subset: efo_slim subset: organ_slim subset: pheno_slim subset: vertebrate_core synonym: "amphibian adult kidney" RELATED [XAO:0000141] synonym: "corpus Wolffi" RELATED [BTO:0001542] synonym: "mesonephric kidney" EXACT [XAO:0000141] synonym: "mesonephroi" EXACT OMO:0003004 [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "middle kidney" RELATED [BTO:0001542] synonym: "opisthonephros" RELATED [VHOG:0000038, XAO:0000141] synonym: "opisto nephros" RELATED [] synonym: "opistonephros" RELATED [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] synonym: "Wolffian body" EXACT [BTO:0001542, GOC:yaf, MESH:A16.254.500, Wikipedia:Mesonephros] xref: AAO:0010384 xref: BTO:0001542 xref: CALOHA:TS-0624 xref: EFO:0000928 xref: EHDAA2:0001130 xref: EHDAA:1581 xref: EHDAA:5903 xref: EMAPA:16744 xref: FMA:72171 xref: GAID:1308 xref: MESH:D001755 xref: NCIT:C26467 xref: SCTID:308799002 xref: TAO:0000529 xref: UMLS:C0025492 {source="ncithesaurus:Mesonephros"} xref: VHOG:0000038 xref: Wikipedia:Mesonephros xref: XAO:0000141 xref: ZFA:0000529 is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0002120 ! pronephros property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray986.png" xsd:anyURI property_value: external_definition "A kidney formed of nephric tubules arising in the middle region of the nephric ridge; a transient embryonic stage that replaces the pronephros, but is itself replaced by the adult metanephros [in mammals; in fishes and amphibians it is the adult kidney]. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.745][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000038", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Organ that is the definitive adult kidney. It replaces the earlier pronephros, which degenerates as the mesonephros becomes functional in feeding stage tadpoles.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010384", ontology="AAO", source="AAO:BJB"} property_value: function_notes "By contrast to the pronephros, the histological features of the mammalian mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP, modified]" xsd:string property_value: has_relational_adjective "mesonephric" xsd:string property_value: homology_notes "As the pronephros regresses, the archinephric duct induces the sequential differentiation of tubules in the more caudal parts of the nephric ridge. (...) Tubules that differentiate in the middle part of the nephric ridge form a kidney called the mesonephros. This kidney functions in the embryos and larvae of all vertebrates. (...) In all vertebrate embryos, the kidney begins with the differentiation of a few renal tubules from the anterior end of the nephric ridge overlying the pericardial cavity. (...) This early-developing embryonic kidney is called the pronephros.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000038", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.639", source="http://bgee.unil.ch/"} property_value: taxon_notes "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In fish and amphibians, the mesonephros will form the mature kidney" xsd:string [Term] id: UBERON:0000081 name: metanephros def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]." [GO:0001656, Wikipedia:Metanephros#Metanephros] subset: organ_slim subset: pheno_slim synonym: "definite kidney" RELATED [BTO:0001543] synonym: "definitive kidney" RELATED [BTO:0001543] synonym: "hind kidney" RELATED [BTO:0001543] synonym: "metanephric kidney" RELATED [VHOG:0000039] synonym: "metanephron" EXACT [BTO:0001543] xref: BTO:0001543 xref: EHDAA2:0001137 xref: EHDAA:3089 xref: EHDAA:5911 xref: EMAPA:17373 xref: EMAPA_RETIRED:17207 xref: FMA:72172 xref: NCIT:C34209 xref: SCTID:308797000 xref: UMLS:C0231049 {source="ncithesaurus:Metanephros"} xref: VHOG:0000039 xref: Wikipedia:Metanephros#Metanephros is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0003220 {evidence="definitional"} ! metanephric mesenchyme relationship: develops_from UBERON:0005080 {source="GO"} ! metanephric ureteric bud relationship: develops_from UBERON:0005753 ! caudal part of nephrogenic cord property_value: development_notes "During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis" xsd:string property_value: editor_note "TODO check developmental relationships" xsd:string property_value: external_definition "A kidney formed of nephric tubules arising in the posterior region of the nephric ridge and drained by a ureter; replaces the embryonic pronephros and mesonephros [in mammals]. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.745][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000039", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "metanephric" xsd:string property_value: homology_notes "The ureteric diverticulum grows dorsally into the posterior region of the nephric ridge. Here it enlarges and stimulates the growth of metanephric tubules that come to make up the metanephric kidney. The metanephros becomes the adult kidney of amniotes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000039", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.543", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000082 name: adult mammalian kidney def: "A kidney at the most advanced stage of development in a mammal." [https://github.com/obophenotype/uberon/issues/1232, Wikipedia:Kidney_development] xref: BTO:0000671 xref: CALOHA:TS-0510 xref: FMA:7203 xref: GAID:423 xref: galen:Kidney xref: MA:0000368 xref: MAT:0000119 xref: MESH:D007668 xref: MIAA:0000119 xref: NCIT:C12415 xref: SCTID:181414000 is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0000081 ! metanephros [Term] id: UBERON:0000083 name: mesonephric tubule def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules] synonym: "renal tubules" RELATED OMO:0003004 [VHOG:0000500] synonym: "tubuli mesonephrici" RELATED OMO:0003011 [Wikipedia:Mesonephric_tubules] xref: AAO:0010389 xref: EHDAA2:0001134 xref: EMAPA:16747 xref: VHOG:0000500 xref: Wikipedia:Mesonephric_tubules xref: XAO:0000148 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005103 ! mesonephric epithelium is_a: UBERON:0006555 ! excretory tube property_value: editor_note "TODO check" xsd:string property_value: external_definition "Any of the renal tubules composing the mesonephros. In mammals they function as excretory structures during the early embryonic development but are later incorporated into the reproductive system. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000500", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/mesonephric+tubule"} property_value: homology_notes "As the pronephros regresses, the archinephric duct induces the sequential differentiation of tubules in the more caudal parts of the nephric ridge. (...) Tubules that differentiate in the middle part of the nephric ridge form a kidney called the mesonephros. This kidney functions in the embryos and larvae of all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000500", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000084 name: ureteric bud def: "An epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]." [MP:0010979, PMID:19828308] subset: pheno_slim synonym: "diverticulum" RELATED [BTO:0001646] synonym: "diverticulum metanephricum" RELATED OMO:0003011 [Wikipedia:Ureteric_bud] synonym: "gemma ureterica" RELATED OMO:0003011 [Wikipedia:Ureteric_bud] synonym: "metanephric bud" RELATED [BTO:0001646] synonym: "metanephric diverticulum" RELATED [Wikipedia:Metanephros#Metanephros] synonym: "ureteric ampulla" RELATED [] synonym: "ureteric diverticulum" RELATED [VHOG:0000541] xref: BTO:0001646 xref: EHDAA2:0002140 xref: EHDAA:3091 xref: EHDAA:5917 xref: EMAPA:17209 xref: NCIT:C34207 xref: SCTID:361528000 xref: UMLS:C1284058 {source="ncithesaurus:Metanephric_Diverticulum"} xref: VHOG:0000541 xref: Wikipedia:Ureteric_bud is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct relationship: develops_from UBERON:0003074 {source="EHDAA2"} ! mesonephric duct relationship: part_of UBERON:0003074 ! mesonephric duct property_value: external_definition "Outgrowth of the mesonephric duct that penetrates the metanephric mesoderm and forms the ureter, renal pelvis, major and minor calyces and collecting ducts. [Embryology, See_Dudek_RW_and_Fix_JD, Third_Edition_(2004)_Philadelphia:_Lippincott_William_and_Wilkins, p.137][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000541", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Outgrowth of the mesonephric duct that penetrates the metanephric mesoderm and forms the ureter, renal pelvis, major and minor calyces and collecting ducts[VHOG:0000541]." xsd:string {source="VHOG:0000541"} property_value: homology_notes "The first embryonic hint of a metanephros is the formation of the metanephric duct that appears as a ureteric diverticulum arising at the base of preexisting mesonephric duct. The ureteric diverticulum grows dorsally into the posterior region of the nephric ridge. Here it enlarges and stimulates the growth of metanephric tubules that come to make up the metanephric kidney. The metanephros becomes the adult kidney of amniotes, and the metanephric duct is usually called the ureter.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000541", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.543", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000085 name: morula def: "A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum." [MP:0012130] subset: pheno_slim synonym: "morula (2-16 cells)" RELATED [EHDAA2:0000005] xref: BTO:0001508 xref: EHDAA2:0000005 xref: FMA:292334 xref: GAID:1295 xref: MESH:D009028 xref: NCIT:C34212 xref: SCTID:361474003 xref: UMLS:C0026573 {source="ncithesaurus:Morula"} xref: Wikipedia:Morula is_a: UBERON:0000922 ! embryo relationship: part_of UBERON:0004716 {source="EHDAA2"} ! conceptus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png" xsd:anyURI property_value: external_ontology_notes "EHDAA2 has embryo starting later" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0000086 name: zona pellucida def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida] subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "oolemma" RELATED [BTO:0003135] synonym: "pellucid zone" RELATED [BTO:0003135] synonym: "striated membrane" RELATED [BTO:0003135] synonym: "vitelline envelope" RELATED [] synonym: "vitelline membrane" RELATED [] synonym: "zona pellucida - vitelline membrane" BROAD [VHOG:0000720] synonym: "zona radiata" RELATED [BTO:0003135] synonym: "zona striata" RELATED [BTO:0003135] xref: BTO:0003135 xref: EHDAA2:0002220 xref: EHDAA:31 xref: EHDAA:62 xref: EMAPA:16035 xref: FMA:18674 xref: GAID:410 xref: MA:0001715 xref: MESH:D015044 xref: NCIT:C33896 xref: TAO:0001111 xref: UMLS:C0043519 {source="ncithesaurus:Zona_Pellucida"} xref: Wikipedia:Zona_pellucida xref: ZFA:0001111 is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0000992 ! ovary relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png" xsd:anyURI property_value: homology_notes "Outside the plasma membrane, three envelopes surround the ovum. The first, the primary egg envelope, lies between the plasma membrane and the surrounding cells of the ovary. The most consistent component of this primary layer is the vitelline membrane, a transparent jacket of fibrous protein. In mammals, the homologous structure is called the zona pellucida.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000720", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.159", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000087 name: inner cell mass def: "A mass of cells that develop into the body of the embryo and some extraembryonic tissues." [ISBN:0-683-40008-8, MGI:pvb] subset: early_development subset: efo_slim subset: pheno_slim synonym: "early embryoblast" RELATED [FMA:86557] synonym: "embryoblast" RELATED [] synonym: "embryoblastus; massa cellularis interna; pluriblastus senior" RELATED OMO:0003011 [Wikipedia:Inner_cell_mass] synonym: "ICM" RELATED [VHOG:0000742] synonym: "pluriblast" RELATED [] xref: EFO:0000547 xref: EHDAA2:0000830 xref: EHDAA:40 xref: EMAPA:16041 xref: FMA:86557 xref: NCIT:C13740 xref: SCTID:361456007 xref: UMLS:C1283994 {source="ncithesaurus:Inner_Cell_Mass"} xref: VHOG:0000742 xref: Wikipedia:Inner_cell_mass is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000358 {source="Wikipedia"} ! blastocyst property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg" xsd:anyURI property_value: development_notes "This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred.The ICM lies within the blastocyst cavity and is entirely surrounded by the single layer of cells called trophoblast. [Wikipedia:Inner_cell_mass]" xsd:string property_value: external_definition "A group of cells found in the mammalian blastocyst that give rise to the embryo. [Biology_Online][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000742", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "A small sphere of cells known as the inner cell mass lies within the trophoblast (of all eutherian mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000742", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.144", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000088 name: trophoblast def: "The mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta." [ISBN:0-683-40008-8, MP:0005031] comment: Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [Wikipedia:Trophoblast] subset: early_development subset: pheno_slim synonym: "massa cellularis externa" RELATED OMO:0003011 [Wikipedia:Trophoblast] synonym: "trophoblast layer" EXACT [MP:0005031] synonym: "trophoblastus" RELATED OMO:0003011 [Wikipedia:Trophoblast] synonym: "trophoderm" RELATED [BTO:0001079] xref: BTO:0001079 xref: CALOHA:TS-1070 xref: EV:0100120 xref: FMA:83029 xref: GAID:1152 xref: MESH:D014327 xref: NCIT:C93292 xref: SCTID:362839005 xref: UMLS:C0041178 {source="ncithesaurus:Trophoblast"} xref: Wikipedia:Trophoblast is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004345 {source="MP-def", source="PMID:19829370"} ! trophectoderm relationship: part_of UBERON:0000358 ! blastocyst property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg" xsd:anyURI property_value: development_notes "The postimplantation derivatives of the trophectoderm, which make up most of the fetal part of the placenta" xsd:string {source="PMID:19829370"} property_value: external_definition "the mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta[MP]" xsd:string {date_retrieved="2012-08-23", external_class="MP:0005031", external_class_label="trophoblast layer", ontology="MP", source="ISBN:0-683-40008-8"} property_value: has_relational_adjective "trophoblastic" xsd:string [Term] id: UBERON:0000089 name: hypoblast (generic) def: "Missing definition for term UBERON:0000089. Please replace it using linked reference." [GO:dph, ZFIN:cvs] subset: early_development subset: efo_slim subset: grouping_class subset: uberon_slim subset: vertebrate_core synonym: "endomesoderm" RELATED [ISBN:0073040584, VHOG:0001222] synonym: "future endoderm and mesoderm" RELATED [ISBN:0073040584] synonym: "hypoblast" EXACT [VHOG:0001222] synonym: "hypoblastus" RELATED OMO:0003011 [Wikipedia:Hypoblast] synonym: "mesendoderm" RELATED [ZFIN:ZDB-PUB-961014-576] xref: AAO:0000229 xref: AAO:0010619 xref: BTO:0003953 xref: EFO:0001930 xref: EMAPA:32762 xref: FMA:293873 xref: MAT:0000418 xref: MIAA:0000418 xref: NCIT:C34190 xref: TAO:0000117 xref: UMLS:C1512561 {source="ncithesaurus:Hypoblast"} xref: VHOG:0001222 xref: Wikipedia:Hypoblast xref: XAO:0003044 xref: ZFA:0000117 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm property_value: curator_notes "this term groups together disparate structures with different relationships." xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png" xsd:anyURI property_value: editor_note "TODO - consider relationship to UBERON:0000091 ! bilaminar disc" xsd:string property_value: external_definition "A primary germ layer that can give rise to both mesoderm and endoderm.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010619", ontology="AAO", source="AAO:EJS"} property_value: external_definition "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000117", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "In mammal and avian, extraembryonic endoderm such as visceral endoderm and hypoblast play essential roles in the embryonic axis formation and germ layer development. These extraembryonic tissues are generally considered to have been created in ancestral amniotes evolved from the Xenopus-type ancestor (reference 1); The endomesoderm secretes as yet unidentified signals that posteriorize the ectoderm, which would otherwise adopt an anterior fate. Our results point to a conserved function at the base of deuterostomes for beta-catenin in germ layer specification and to a causal link in the definition of the posterior part of the embryonic ectoderm by way of activating posteriorizing endomesodermal factors (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001222", ontology="VHOG", source="DOI:10.1016/j.ydbio.2009.05.543 Takeuchi M, Takahashi M, Okabe M, Aizawa S, Germ layer patterning in bichir and lamprey; an insight into its evolution in vertebrates. Developmental Biology (2009) (reference 1), Darras S, Gerhart J, Terasaki M, Kirschner M, Lowe CJ, Beta-catenin specifies the endomesoderm and defines the posterior organizer of the hemichordate Saccoglossus kowalevskii. Development (2011) (reference 2)", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/437" xsd:anyURI property_value: term_tracker_item "https://sourceforge.net/p/geneontology/ontology-requests/9676/" xsd:anyURI [Term] id: UBERON:0000090 name: blastocele def: "Fluid-filled central region of a blastocyst." [Wikipedia:Blastocele] subset: early_development subset: pheno_slim synonym: "blastocelic cavity" RELATED [EMAPA:16044] synonym: "blastocoel" RELATED [VHOG:0000811] synonym: "blastocoele" EXACT [] synonym: "blastocoelic cavity" EXACT [EHDAA2:0000175] synonym: "blastocyst cavity" EXACT [] synonym: "cleavage cavity" EXACT [] synonym: "segmentation cavity" EXACT [] xref: AAO:0010433 xref: EHDAA2:0000175 xref: EHDAA:50 xref: EMAPA:16044 xref: FMA:293131 xref: SCTID:361455006 xref: VHOG:0000811 xref: Wikipedia:Blastocele xref: XAO:0000294 is_a: UBERON:0002553 ! anatomical cavity relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Blastocyst.gif" xsd:anyURI property_value: external_definition "A blastocoel forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis. The blastocoel is the cavity of the blastula, a closed space which is invaded by early mesenchyme and later obliterated by the enlarging archenteron.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010433", ontology="AAO", source="ISBN:0-02-377110-0", source="ISBN:0815318960"} property_value: external_definition "The cavity inside the blastula. [The_evolution_of_organ_systems_(2007)_Oxford:_Oxford_University_Press, p.150, see_Schmidt-Rhaesa_A][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000811", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "In the development of many animals, a hollow blastula stage is formed during early embryogenesis. Such a hollow blastula is even regarded as an autapomorphy of Metazoa and is present already in some sponges.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000811", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.150", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/475" xsd:anyURI [Term] id: UBERON:0000091 name: bilaminar disc def: "A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc." [MP:0003886] subset: early_development subset: pheno_slim synonym: "bilaminar disk" RELATED [Wikipedia:Bilaminar_disc] synonym: "bilaminary embryonic disc" EXACT [] synonym: "bilaminary germ disc" EXACT [ISBN:9780878932504] synonym: "embryonic disc" BROAD [MP:0003886] synonym: "embryonic shield" BROAD [MP:0003886] synonym: "germinal disc" BROAD [MP:0003886] synonym: "germinal disk" BROAD [MP:0003886] xref: FMA:293863 xref: NCIT:C34112 xref: UMLS:C1283997 {source="ncithesaurus:Bilaminar_Embryonic_Disc"} xref: Wikipedia:Bilaminar_disc is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png" xsd:anyURI [Term] id: UBERON:0000092 name: post-embryonic stage def: "Stage succeeding embryo, including mature structure." [https://orcid.org/0000-0002-6601-2165] synonym: "post-hatching stage" NARROW [] synonym: "postembryonic" RELATED [] synonym: "postembryonic stage" EXACT [] xref: BilaDO:0000003 xref: OGES:000010 xref: OGES:000014 xref: OGES:000024 xref: SsalDv:0000038 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: WBls:0000022 xref: WBls:0000093 xref: WBls:0000103 is_a: UBERON:0000105 ! life cycle stage property_value: seeAlso "https://github.com/obophenotype/uberon/issues/344" xsd:anyURI property_value: taxon_notes "In birds, the postnatal stage begins when the beak penetrates the shell (i.e., external pipping) (Brown et al. 1997)" xsd:string [Term] id: UBERON:0000093 name: sulcus def: "A depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)] subset: grouping_class subset: non_informative xref: Wikipedia:Sulcus_(anatomy) is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-04-09T06:23:22Z [Term] id: UBERON:0000094 name: membrane organ def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]." [FMA:7145] synonym: "membrane" BROAD [] synonym: "membrane of organ" EXACT [] xref: FMA:7145 is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-07-30T05:19:13Z [Term] id: UBERON:0000095 name: cardiac neural crest def: "Portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]." [Wikipedia:Cardiac_neural_crest] subset: vertebrate_core synonym: "cardiac neural crest complex" RELATED [Wikipedia:Cardiac_neural_crest] synonym: "complexus cristae neuralis cardiacus" RELATED [Wikipedia:Cardiac_neural_crest] xref: TAO:0002173 xref: Wikipedia:Cardiac_neural_crest xref: XAO:0004190 xref: ZFA:0001648 is_a: UBERON:0005291 ! embryonic tissue relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0002342 ! neural crest property_value: external_definition "A subpopulation of the cephalic neural crest that emerges from the otic level to the anterior limit of somite 4. It migrates to the heart and is essential for the septation of the outflow track[DOI:10.1242/dev.091751]." xsd:string {source="DOI:10.1242/dev.091751"} property_value: external_ontology_notes "ZFA treats this as a subtype of NC." xsd:string {external_ontology="ZFA"} creation_date: 2009-07-30T07:57:38Z [Term] id: UBERON:0000100 name: blastopore def: "The orifice of invagination of the endomesodermal cells during the embryonic stages of an organism." [https://github.com/obophenotype/uberon/issues/660, https://orcid.org/0000-0003-3308-6245, PMID:23103190] subset: early_development subset: metazoa_core xref: AAO:0000045 xref: BTO:0001695 xref: Wikipedia:Blastopore xref: XAO:0000208 is_a: UBERON:0002050 ! embryonic structure relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} relationship: part_of UBERON:0004735 {source="https://orcid.org/0000-0003-3308-6245"} ! archenteron property_value: external_definition "A slit-like invagination on the dorsal side of the blastula surface of the embryo where the mesoderm and endoderm move inside the embryo at gatrulation.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000045", ontology="AAO", source="AAO:BJB"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/660" xsd:anyURI property_value: taxon_notes "In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus" xsd:string [Term] id: UBERON:0000101 name: lobe of lung def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO] subset: pheno_slim synonym: "lung lobe" EXACT [] synonym: "pulminory lobe" EXACT [] synonym: "pulmonary lobe" EXACT [FMA:7311] xref: EMAPA:36281 xref: FMA:7311 xref: galen:LobeOfLung xref: MA:0003098 xref: NCIT:C34021 xref: SCTID:245524004 xref: UMLS:C0225752 {source="ncithesaurus:Lung_Lobe"} is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000102 name: lung vasculature def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] subset: pheno_slim synonym: "lung vascular network" EXACT [OBOL:automatic] synonym: "pulmonary vasculature" EXACT [FMA:73750] synonym: "vascular network of lung" EXACT [OBOL:automatic] synonym: "vasculature of lung" EXACT [OBOL:automatic] xref: FMA:73750 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000103 name: obsolete life cycle stage boundary def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [https://orcid.org/0000-0002-6601-2165] synonym: "life cycle stage transition event" EXACT [] synonym: "life cycle stage transition instant" EXACT [] xref: span:ProcessBoundary is_obsolete: true [Term] id: UBERON:0000104 name: life cycle def: "An entire span of an organism's life. In metazoans, commences with the zygote stage and ends with the death of the organism." [https://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: upper_level synonym: "entire life cycle" EXACT [] synonym: "entire lifespan" EXACT [] synonym: "life" EXACT [] synonym: "lifespan" EXACT [] xref: AcarDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BtauDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CfamDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ChirDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CporDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DpseDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DsimDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EcabDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: FBdv:00000000 xref: FcatDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ncithesaurus:Life xref: OanaDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OcunDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000011 xref: PpanDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000000 ! processual entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/532" xsd:anyURI [Term] id: UBERON:0000105 name: life cycle stage def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [https://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: efo_slim subset: upper_level synonym: "developmental stage" NARROW [] synonym: "stage" NARROW [] xref: AcarDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BILS:0000105 xref: BtauDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CfamDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ChirDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CporDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DpseDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: DsimDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EcabDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0000399 xref: FBdv:00007012 xref: FcatDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: FMA:24120 xref: GgalDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MESH:D008018 xref: MmulDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ncithesaurus:Developmental_Stage xref: OanaDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OcunDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PdumDv:0000090 xref: PpanDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: WBls:0000002 xref: XAO:1000000 xref: ZFS:0000000 xref: ZFS:0100000 is_a: UBERON:0000000 ! processual entity relationship: part_of UBERON:0000104 ! life cycle relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: editor_note "this class represents a proper part of the life cycle of an organism. The class 'life cycle' should not be placed here" xsd:string property_value: external_ontology_notes "the WBls class 'all stages' belongs here as it is the superclass of other WBls stages" xsd:string property_value: external_ontology_notes "we map the ZFS unknown stage here as it is logically equivalent to saying *some* life cycle stage" xsd:string [Term] id: UBERON:0000106 name: zygote stage def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [Wikipedia:Zygote] subset: efo_slim synonym: "1-cell stage" EXACT [] synonym: "fertilized egg stage" EXACT [BTO:0000854] synonym: "fertilized egg stage" RELATED [] synonym: "one cell stage" EXACT [] synonym: "one-cell stage" RELATED [VHOG:0000745] synonym: "zygote" RELATED [VHOG:0000745] synonym: "zygotum" RELATED OMO:0003011 [Wikipedia:Zygote] xref: BilaDO:0000005 xref: BILS:0000106 xref: ChirDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0001322 xref: EHDAA:27 xref: FBdv:00005288 xref: HsapDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: IDOMAL:0000302 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MmusDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: NCIT:C12601 xref: OariDv:0000009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PdumDv:0000100 xref: RnorDv:0000048 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000087 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: VHOG:0000745 xref: Wikipedia:Zygote xref: XAO:1000001 xref: ZFS:0000001 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: seeAlso EMAPA:16033 property_value: homology_notes "As in all metazoans, eumetazoan development begins with a fertilized egg, or zygote.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000745", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.107", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000107 name: cleavage stage def: "The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)] subset: efo_slim xref: BilaDO:0000006 xref: BILS:0000107 xref: ChirDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0001290 xref: FBdv:00000054 xref: GgalDv:0000064 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MESH:D002970 xref: MmusDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000015 xref: OGES:000020 xref: PdumDv:0000200 xref: RnorDv:0000049 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000088 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: Wikipedia:Cleavage_(embryo) xref: XAO:1000004 xref: ZFS:0000046 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000108 name: blastula stage def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] subset: efo_slim xref: BilaDO:0000007 xref: BILS:0000108 xref: ChirDv:0000010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0001282 xref: GgalDv:0000091 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000025 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000003 xref: OGES:000016 xref: OGES:000021 xref: RnorDv:0000054 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000089 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: WBls:0000005 xref: Wikipedia:Blastula xref: XAO:1000003 xref: ZFS:0000045 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png" xsd:anyURI property_value: editor_note "consider adding a preceding stage 'morula stage' as part of cleavage" xsd:string [Term] id: UBERON:0000109 name: gastrula stage def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369] subset: efo_slim synonym: "blastocystis trilaminaris stage" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar blastocyst stage" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar blastoderm stage" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar disk stage" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar germ stage" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar stage" RELATED [https://orcid.org/0000-0002-6601-2165] xref: BilaDO:0000008 xref: BILS:0000109 xref: ChirDv:0000011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0001296 xref: FBdv:00005317 xref: GgalDv:0000092 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000013 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000026 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000004 xref: OGES:000019 xref: RnorDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000090 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: WBls:0000010 xref: XAO:1000005 xref: ZFS:0000047 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000110 name: neurula stage def: "A chordate developmental stage defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841] xref: BilaDO:0000009 xref: BILS:0000110 xref: ChirDv:0000012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000027 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000091 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: XAO:1000006 is_a: UBERON:0000105 ! life cycle stage relationship: dubious_for_taxon NCBITaxon:7955 relationship: part_of UBERON:0000068 ! embryo stage property_value: seeAlso "https://github.com/obophenotype/developmental-stage-ontologies/issues/84" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/343" xsd:anyURI property_value: taxon_notes "In zebrafish, the times of neurulation and segmentation overlap so extensively there is no distinct neurula period of development, such as occurs largely before segmentation in amphibian embryos." xsd:string [Term] id: UBERON:0000111 name: organogenesis stage def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis] synonym: "segmentation stage" RELATED [] xref: BilaDO:0000010 xref: BILS:0000111 xref: ChirDv:0000013 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000094 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000028 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000005 xref: OGES:000032 xref: RnorDv:0000055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000022 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000086 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: Wikipedia:Organogenesis is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage property_value: seeAlso "https://github.com/obophenotype/developmental-stage-ontologies/issues/84" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/533" xsd:anyURI [Term] id: UBERON:0000112 name: sexually immature stage subset: efo_slim synonym: "immature stage" EXACT [VHOG:FB] synonym: "juvenile stage" NARROW [XAO:1000010] synonym: "subadult stage" RELATED [http://eol.org/schema/terms/subadult] xref: AcarDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BILS:0000112 xref: BtauDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BTO:0002168 xref: CfamDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ChirDv:0000015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CporDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EcabDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EFO:0001300 xref: EV:0300051 xref: FcatDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000264 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000043 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OanaDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OcunDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000009 xref: PpanDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000041 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: XAO:1000010 xref: XtroDO:0000083 xref: ZFS:0000051 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000066 ! fully formed stage property_value: external_definition "The stage of being a sexually immature adult animal[XAO:1000010]." xsd:string {source="XAO:1000010"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/427" xsd:anyURI property_value: taxon_notes "In mammals this would include infant (nourishment from lactation) and juvenile (prepubertal no longer dependent on mother)" xsd:string [Term] id: UBERON:0000113 name: post-juvenile adult stage def: "The stage of being a sexually mature adult animal." [https://orcid.org/0000-0002-6601-2165] synonym: "adult stage" BROAD [] xref: AcarDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BILS:0000113 xref: BtauDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CfamDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ChirDv:0000035 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CporDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EcabDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EV:0300064 xref: EV:0300070 xref: FcatDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000258 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MIAA:0000403 xref: MmulDv:0000021 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000110 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OanaDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OcunDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OGES:000026 xref: OGES:000027 xref: PpanDv:0000016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SsalDv:0000042 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: XAO:1000093 xref: ZFS:0000044 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000066 ! fully formed stage property_value: seeAlso "https://github.com/obophenotype/uberon/issues/345" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/499" xsd:anyURI [Term] id: UBERON:0000114 name: lung connective tissue def: "The connective tissue located between the respiratory (airway and alveolar) epithelium, the capillary endothelium and pleural mesothelium; it contains basement membrane composed of collagen, elastin, proteoglycans, and fibronectin." [ISBN:0-683-40008-8, MGI:anna, MP:0002276, PMID:14635660] subset: human_reference_atlas subset: pheno_slim synonym: "connective tissue of lung" EXACT [OBOL:automatic] synonym: "lung interstitial tissue" RELATED [MA:0001782] synonym: "lung interstitium" RELATED [] synonym: "pulmonary connective tissue" RELATED [EMAPA:35521] synonym: "pulmonary interstitial tissue" RELATED [] synonym: "pulmonary interstitium" EXACT [FMA:27533] xref: EMAPA:35521 xref: FMA:27533 xref: MA:0001782 xref: SCTID:201609008 is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung relationship: present_in_taxon NCBITaxon:9606 relationship: transformation_of UBERON:0004883 ! lung mesenchyme property_value: function_notes "it functions in the mechanical behavior of the lung, and forms a barrier to regulate the flow of plasma constituents from the capillaries to the airway and alveolar spaces" xsd:string [Term] id: UBERON:0000115 name: lung epithelium def: "The epithelial layer of the lung." [MP:0006382] subset: pheno_slim synonym: "epithelial tissue of lung" EXACT [OBOL:automatic] synonym: "epithelium of lung" EXACT [OBOL:automatic] synonym: "lung epithelial tissue" EXACT [OBOL:automatic] synonym: "pulmonary epithelium" RELATED [BTO:0001653] xref: BTO:0001653 xref: EMAPA:32860 xref: MA:0001783 is_a: UBERON:0004815 ! lower respiratory tract epithelium relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0002048 ! lung property_value: taxon_notes "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string [Term] id: UBERON:0000116 name: lung saccule def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] subset: pheno_slim is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung [Term] id: UBERON:0000117 name: respiratory tube def: "A tube in the respiratory system. Examples: bronchus, bronchiole, trachea." [GO:0030323, http://orcid.org/0000-0002-6601-2165] synonym: "airway" RELATED [] synonym: "respiratory conducting tube" NARROW [MP:0004391] synonym: "segment of tracheobronchial tree" EXACT [FMA:12224] synonym: "segment of tracheobronchial tree" NARROW [FMA:12224] synonym: "tracheobronchial tree segment" NARROW [FMA:12224] xref: EMAPA:37946 {source="MA:th"} xref: FMA:12224 is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0000065 ! respiratory tract property_value: external_ontology_notes "in GO lung development is part of respiratory tube development. This can lead to inconsistencies with other ontologies, e.g. VT. The GO structure may be better represented by a tree of tubes (see the FMA class)" xsd:string {external_ontology="GO"} [Term] id: UBERON:0000118 name: lung bud def: "Structure derived from foregut that becomes a lung[GO]." [GO:0060431, Wikipedia:Respiratory_bud] subset: pheno_slim synonym: "gemma pulmonalis" RELATED OMO:0003011 [Wikipedia:Lung_buds] synonym: "gemma respiratoria" RELATED OMO:0003011 [Wikipedia:Lung_buds] synonym: "lung bud" RELATED OMO:0003004 [] synonym: "primary lung bud" RELATED [GO:0060572] synonym: "respiratory diverticulum" RELATED [Wikipedia:Lung_buds] xref: BTO:0001643 xref: EHDAA2:0004089 xref: NCIT:C34260 xref: NCIT:C34282 xref: SCTID:361427007 xref: UMLS:C1514420 {source="ncithesaurus:Primary_Bronchial_Bud"} xref: UMLS:C1514897 {source="ncithesaurus:Respiratory_Diverticulum"} xref: Wikipedia:Respiratory_bud is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud relationship: develops_from UBERON:0005597 ! lung primordium relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray948.png" xsd:anyURI property_value: editor_note "clarify successors - include bronchi?" xsd:string [Term] id: UBERON:0000119 name: cell layer def: "Portion of tissue, that consists of single layer of cells connected to each other by cell junctions. Examples: layer of glial cells; epithelium." [https://orcid.org/0000-0002-6601-2165] subset: upper_level synonym: "cell sheath" RELATED [] synonym: "layer" BROAD [NCIT:C66831] synonym: "layer of cells" EXACT [] synonym: "sheath of cells" RELATED [] xref: NCIT:C66831 is_a: UBERON:0000957 ! lamina property_value: editor_note "consider adding to caro" xsd:string [Term] id: UBERON:0000120 name: blood brain barrier def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier] synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: http://uri.neuinfo.org/nif/nifstd/nlx_subcell_100205 xref: MESH:D001812 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13194 xref: UMLS:C0005854 {source="ncithesaurus:Blood-Brain_Barrier"} xref: Wikipedia:Blood-brain_barrier is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000121 name: perineurium def: "A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. The perineurium is a component of the bloodânerve barrier and is essential for protecting axons and their associated Schwann cells from ionic flux, toxins and infection." [NLXANAT:090205, PMID:18434767, PMID:25818566] xref: BTO:0003153 xref: EMAPA:37849 {source="MA:th"} xref: FMA:52585 xref: NCIT:C33302 xref: NCIT:C41407 xref: NLXANAT:090205 xref: SCTID:362299001 xref: UMLS:C0205890 {source="ncithesaurus:Perineurium"} xref: Wikipedia:Perineurium is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0003209 ! blood nerve barrier property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png" xsd:anyURI property_value: external_definition "Connective tissue surrounding a fascicle[Wikipedia:Perineurium]." xsd:string {source="Wikipedia:Perineurium"} property_value: external_ontology_notes "consider FBbt:00007090 (perineurium): The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the sub-perineural glial sheath (sometimes referred to as the perineurial sheath inner layer)" xsd:string {external_ontology="FBbt"} property_value: has_relational_adjective "perineurial" xsd:string [Term] id: UBERON:0000122 name: neuron projection bundle alt_id: UBERON:0005163 def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS] synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [FBbt:00005099] synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 xref: FBbt:00005099 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NLX:147821 is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000123 name: endoneurium def: "The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition)." [NLXANAT:090202] xref: EMAPA:37847 {source="MA:th"} xref: FMA:52586 xref: NCIT:C32518 xref: NLXANAT:090202 xref: SCTID:15931004 xref: UMLS:C0205888 {source="ncithesaurus:Endoneurium"} xref: Wikipedia:Endodeurium is_a: UBERON:0006804 {source="FMA"} ! reticular tissue relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: external_definition "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus[Wikipedia:Endodeurium]." xsd:string {source="Wikipedia:Endodeurium"} [Term] id: UBERON:0000124 name: epineurium def: "A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition." [NLXANAT:090203] xref: BTO:0003154 xref: EMAPA:37848 {source="MA:th"} xref: FMA:12234 xref: NCIT:C32528 xref: NLXANAT:090203 xref: SCTID:64482002 xref: UMLS:C0205889 {source="ncithesaurus:Epineurium"} xref: Wikipedia:Epineurium is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png" xsd:anyURI property_value: external_definition "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues[Wikipedia:Epineurium]." xsd:string {source="Wikipedia:Epineurium"} [Term] id: UBERON:0000125 name: neural nucleus def: "A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO)." [NLX:28443] subset: cumbo synonym: "nervous system nucleus" EXACT [] synonym: "neuraxis nucleus" EXACT [FMA:83686] synonym: "neuronal nucleus" EXACT [AEO:0000136] synonym: "nucleus" BROAD [] synonym: "nucleus of CNS" EXACT [NLX:28443] synonym: "nucleus of neuraxis" RELATED [] xref: AEO:0000136 xref: FMA:83686 xref: NCIT:C13197 xref: NLX:28443 xref: Wikipedia:Nucleus_(neuroanatomy) is_a: UBERON:0011215 ! central nervous system cell part cluster property_value: external_definition "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO][GO_REF:0000021]." xsd:string {source="GO_REF:0000021"} property_value: external_ontology_notes "Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in 'subcortical' because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in 'relatively compact' and 'distiguishable by histology' because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate." xsd:string [Term] id: UBERON:0000126 name: cranial nerve nucleus def: "Nucleus that receives projections from or contains neurons that send projections through one of the cranial nerves." [NLX:28532] synonym: "cranial neural nucleus" EXACT [FMA:54501] synonym: "nucleus nervi cranialis" RELATED OMO:0003011 [Wikipedia:Cranial_nerve_nucleus] synonym: "nucleus of cranial nerve" EXACT [] xref: EMAPA:37066 {source="MA:th"} xref: FMA:54501 xref: NLX:28532 xref: SCTID:280160003 xref: Wikipedia:Cranial_nerve_nucleus is_a: UBERON:0002308 ! nucleus of brain property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI [Term] id: UBERON:0000127 name: facial nucleus def: "The group of motor neurons residing in the pons that innervate the muscles of facial expression." [ISBN:0838580343, MP:0000909] subset: pheno_slim synonym: "facial nerve nucleus" EXACT [] synonym: "facial VII motor nucleus" RELATED [MA:0001014] synonym: "facial VII nucleus" EXACT [MA:0001014] synonym: "nucleus of facial nerve" EXACT [FMA:54572] xref: BAMS:7 xref: BAMS:7N xref: BAMS:VII xref: BM:Pons-VII xref: DHBA:12420 xref: EHDAA2:0004638 xref: EMAPA:35338 xref: EV:0100267 xref: FMA:54572 xref: MA:0001014 xref: MESH:D065828 xref: NCIT:C12898 xref: SCTID:280166009 xref: UMLS:C0228740 {source="ncithesaurus:Facial_Nerve_Nucleus"} xref: VHOG:0001412 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: immediate_transformation_of UBERON:0010123 {evidence="definitional"} ! future facial nucleus relationship: part_of UBERON:0000988 ! pons property_value: external_ontology_notes "FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial nucleus is distinct from facial motor nucleus." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000128 name: olivary body def: "Prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei." [Wikipedia:Olivary_body] subset: pheno_slim synonym: "oliva" RELATED OMO:0003011 [Wikipedia:Olivary_body] synonym: "olivary nucleus" RELATED [BTO:0002299] synonym: "olive" RELATED [] synonym: "olive body" EXACT [] xref: BTO:0002299 xref: SCTID:279293003 xref: Wikipedia:Olivary_body is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001896 ! medulla oblongata property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png" xsd:anyURI [Term] id: UBERON:0000130 name: transverse foramen def: "Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves." [Wikipedia:Transverse_foramen] synonym: "foramen transversarium" EXACT [Wikipedia:Transverse_foramen] synonym: "foramen transversarium" RELATED OMO:0003011 [Wikipedia:Transverse_foramen] synonym: "foramen transversarium of cervical vertebra" EXACT [FMA:23998] synonym: "foramen transversarium vertebrae cervicales" EXACT OMO:0003011 [FMA:23997, FMA:TA] synonym: "transverse foramen of cervical vertebra" EXACT [FMA:23997] xref: EMAPA:36272 xref: FMA:23997 xref: SCTID:280735005 xref: Wikipedia:Transverse_foramen is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001077 ! transverse process of vertebra relationship: part_of UBERON:0002413 ! cervical vertebra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray84.png" xsd:anyURI [Term] id: UBERON:0000144 name: trochlea of humerus def: "The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna." [Wikipedia:Trochlea_of_humerus] subset: human_reference_atlas synonym: "humeral trochlea" EXACT [FMA:23370] synonym: "trochlea humeri" EXACT [Wikipedia:Trochlea_of_humerus] xref: FMA:23370 xref: SCTID:282817004 xref: Wikipedia:Trochlea_of_humerus is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004404 ! distal epiphysis of humerus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4b/Trochleahumeri.png" xsd:anyURI [Term] id: UBERON:0000151 name: pectoral fin def: "Paired fin that is located in the thoracic region of the body." [TAO:curator, VSAO:0000147] synonym: "forefin" EXACT [VSAO:0000147] synonym: "pectoral fins" RELATED OMO:0003004 [ZFA:0001161] xref: BTO:0004653 xref: SCTID:416982006 xref: TAO:0001161 xref: VSAO:0000147 xref: Wikipedia:Pectoral_fin#Fins xref: ZFA:0001161 is_a: UBERON:0002534 ! paired fin is_a: UBERON:0004710 {is_entailed="true"} ! pectoral appendage property_value: external_definition "Paired fin that is located in the thoracic region of the body.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001161", ontology="TAO", source="TAO:wd"} property_value: external_definition "Paired fin that is located in the thoracic region of the body.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000147", ontology="VSAO", source="TAO:curator"} [Term] id: UBERON:0000152 name: pelvic fin def: "Paired fin located in the abdominal position of the body." [TAO:curator, VSAO:0000129] subset: efo_slim synonym: "pelvic fins" RELATED OMO:0003004 [ZFA:0001184] xref: BTO:0004651 xref: EFO:0003644 xref: TAO:0001184 xref: VSAO:0000129 xref: Wikipedia:Pectoral_fin#Fins xref: ZFA:0001184 is_a: UBERON:0002534 ! paired fin is_a: UBERON:0004709 {is_entailed="true"} ! pelvic appendage property_value: external_definition "Paired fin located in the abdominal position of the body.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001184", ontology="TAO", source="TAO:wd"} property_value: external_definition "Paired fin located in the abdominal position of the body.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000129", ontology="VSAO", source="TAO:curator"} [Term] id: UBERON:0000153 name: anterior region of body is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000154 name: posterior region of body is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000155 name: theca cell layer def: "A layer of the ovarian follicle that consists of theca cells." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "layer of theca cells" EXACT [] synonym: "ovarian theca" RELATED [EMAPA:35636] synonym: "ovary theca" EXACT [MA:0001712] synonym: "theca cell layer of ovarian follicle" EXACT [] synonym: "theca folliculi" RELATED OMO:0003011 [Wikipedia:Theca_of_follicle] synonym: "theca of follicle" EXACT [] synonym: "thecal cell layer" EXACT [ZFA:0001113] synonym: "thecal cell layers" RELATED OMO:0003004 [ZFA:0001113] xref: BTO:0002853 xref: EFO:0003629 xref: EMAPA:35636 xref: FMA:18656 xref: MA:0001712 xref: SCTID:361385000 xref: TAO:0001113 xref: Wikipedia:Theca_of_follicle xref: ZFA:0001113 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001305 ! ovarian follicle relationship: present_in_taxon NCBITaxon:9606 property_value: function_notes "The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase. [Wikipedia:Theca_of_follicle]" xsd:string [Term] id: UBERON:0000156 name: theca externa alt_id: UBERON:0005182 def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa] subset: human_reference_atlas subset: pheno_slim synonym: "external coat of theca folliculi" RELATED [BTO:0002852] synonym: "ovary theca externa" EXACT [MA:0001713] synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657] synonym: "tunica externa of theca folliculi" EXACT [FMA:18657] synonym: "tunica externa thecae folliculi" RELATED OMO:0003011 [BTO:0002852, Wikipedia:Theca_externa] xref: BTO:0002852 xref: FMA:18657 xref: MA:0001713 xref: SCTID:258767003 xref: Wikipedia:Theca_externa is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! reproductive structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Mature_Graffian_follicle.jpg" xsd:anyURI [Term] id: UBERON:0000157 name: theca interna alt_id: UBERON:0005183 def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna] subset: human_reference_atlas subset: pheno_slim synonym: "internal coat of capsule of Graafian follicle" RELATED [BTO:0002851] synonym: "ovary theca interna" EXACT [MA:0001714] synonym: "theca interna (folliculus ovaricus tertiarius)" EXACT [FMA:18658] synonym: "tunica interna of theca folliculi" EXACT [FMA:18658] synonym: "tunica interna thecae folliculi" RELATED [BTO:0002851] xref: BTO:0002851 xref: FMA:18658 xref: MA:0001714 xref: SCTID:258869006 xref: Wikipedia:Theca_externa#Theca_interna is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000155 ! theca cell layer relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000158 name: membranous layer synonym: "membrane" BROAD [] synonym: "membranous organ component" EXACT [FMA:82500] xref: FMA:30322 xref: FMA:82500 xref: MESH:D008566 xref: NCIT:C12749 is_a: UBERON:0004923 ! organ component layer property_value: external_definition "A thin sheet or layer of pliable tissue, serving as a covering or envelope of a part, as the lining of a cavity, as a partition or septum, or to connect two structures." xsd:string {source="ncithesaurus:Membrane"} [Term] id: UBERON:0000159 name: anal canal def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [Wikipedia:Anal_canal] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "anal canal" EXACT [] synonym: "anal canal viewed anatomically" EXACT [] synonym: "anal pad" RELATED [] synonym: "anatomical anal canal" EXACT [] synonym: "anus" RELATED [] synonym: "canalis analis" RELATED OMO:0003011 [BTO:0001978, Wikipedia:Anal_canal] synonym: "cloaca" RELATED [] synonym: "cloacal chamber" RELATED [] synonym: "mesenteron" RELATED [] synonym: "pars analis recti" RELATED [BTO:0001978] xref: BTO:0001978 xref: CALOHA:TS-2160 xref: EMAPA:18256 xref: FMA:15703 xref: galen:AnalCanal xref: MA:0000330 xref: MESH:D001003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12375 xref: SCTID:245438008 xref: UMLS:C0227411 {source="ncithesaurus:Anal_Canal"} xref: Wikipedia:Anal_canal is_a: UBERON:0004111 ! anatomical conduit relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001353 ! anal region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png" xsd:anyURI property_value: editor_note "requires alignment with EHDAA2 and complete developmental relationships" xsd:string [Term] id: UBERON:0000160 name: intestine def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bowel" EXACT [] synonym: "intestinal tract" RELATED [] xref: AAO:0000246 xref: ANISEED:1235303 xref: BSA:0000093 xref: BTO:0000648 xref: CALOHA:TS-0490 xref: EFO:0000834 xref: EMAPA:32874 xref: EV:0100071 xref: FMA:7199 xref: GAID:295 xref: galen:Intestine xref: MA:0000328 xref: MA:0001524 xref: MESH:D007422 xref: MIAA:0000043 xref: NCIT:C12736 xref: SCTID:256876008 xref: TAO:0001338 xref: UMLS:C0021853 {source="ncithesaurus:Intestine"} xref: VHOG:0000056 xref: WBbt:0005772 xref: Wikipedia:Intestine xref: XAO:0000129 xref: ZFA:0001338 is_a: UBERON:0004921 {source="cjm"} ! subdivision of digestive tract relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system property_value: editor_note "This class is probably too inclusive" xsd:string property_value: external_definition "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000246", ontology="AAO", source="AAO:EJS"} property_value: external_definition "The tract of the alimentary canal. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000056", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "intestinal" xsd:string property_value: taxon_notes "In zebrafish, No stomach, small intestine, or large intestine can be distinguished. However, differences can be found in the morphology of the mucosa columnar epithelial cells and the number of goblet cells, suggesting functional differentiation. The intestine has numerous folds that become progressively shorter in a rostral-to-caudal direction. Proportionally, these folds are significantly larger than the finger-like intestinal villi of mammals and other amniotes (Wallace et al. 2005). Columnar-shaped absorptive enterocytes are the most numerous in the zebrafish intestinal epithelium. Goblet cells are the second most populous epithelial cell type." xsd:string [Term] id: UBERON:0000161 name: orifice def: "Anatomical conduit that connects two adjacent body spaces (or a body space with the space surrounding the organism)[FMA,modified]." [FMA:3724] synonym: "anatomical orifice" EXACT [FMA:3724] synonym: "anatomical ostium" BROAD [FMA:3724] synonym: "hilum" NARROW [] synonym: "ostium" BROAD [] xref: FMA:3724 xref: SCTID:91837002 is_a: UBERON:0004111 ! anatomical conduit property_value: external_ontology_notes "in FMA, this is an anatomical conduit *space*, rather than anatomical conduit" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000162 name: cloaca def: "Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures." [ISBN:0073040584, Wikipedia:Cloaca] synonym: "cloacal chamber" RELATED [AAO:0000095] synonym: "vent" RELATED [XAO:0000244] xref: AAO:0000095 xref: GAID:1206 xref: MESH:D002988 xref: NCIT:C34127 xref: SCTID:362857006 xref: SCTID:370631000 xref: UMLS:C0008987 {source="ncithesaurus:Cloaca"} xref: VHOG:0001186 xref: Wikipedia:Cloaca xref: XAO:0000244 xref: ZFA:0005781 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001555 {source="ZFA"} ! digestive tract relationship: part_of UBERON:0004122 {source="AAO"} ! genitourinary system relationship: present_in_taxon NCBITaxon:9369 {notes="most adult placentals have no trace of a cloaca. However, the tenrecs and golden moles, small placental mammals native to Africa, retain a cloaca as adults."} property_value: development_notes "hindgut endoderm and proctodeal ectoderm." xsd:string {source="WP"} property_value: editor_note "adding df link to embryonic cloaca leads to a cycle in uberon-simple, as cloaca is a suberclass of embryonic cloaca" xsd:string property_value: external_definition "A common passage for fecal, urinary, and reproductive discharge in most lower vertebrates as well as the terminal end of the hindgut before division into rectum, bladder, and genital primordia in mammalian embryos. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001186", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cloaca"} property_value: external_definition "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000095", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "cloacal" xsd:string property_value: homology_notes "A cloaca is apparently a primitive vertebrate feature because it occurs in most primitive gnathostomes and persists in the embryos of almost all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001186", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.572", source="http://bgee.unil.ch/"} property_value: taxon_notes "Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs" xsd:string [Term] id: UBERON:0000163 name: embryonic cloaca def: "Endoderm-lined chamber that develops as pouch-like dilation of the caudal end of the hindgut and receives the allantois ventrally and two mesonephric ducts laterally; caudally it ends blindly at the cloacal membrane formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)] subset: pheno_slim synonym: "cloaca" RELATED SENSU [] xref: EHDAA2:0000256 xref: EHDAA:4895 xref: EMAPA:27573 xref: Wikipedia:Cloaca_(embryology) is_a: UBERON:0000162 ! cloaca relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001008 {source="EHDAA2"} ! renal system relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region property_value: curator_notes "this class represents the embryonic form of the cloaca, as found in both mammals and non-mammals." xsd:string [Term] id: UBERON:0000164 name: primitive urogenital sinus def: "The ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females." [ISBN:0-683-40008-8, MP:0010116] subset: pheno_slim synonym: "fetal UGS" EXACT [PMID:18977204] synonym: "sinus urogenitalis" EXACT OMO:0003011 [] synonym: "UGS" EXACT [MP:0010116] synonym: "urogenital sinus" BROAD [MP:0010116] xref: EHDAA2:0004060 xref: EHDAA:5029 xref: EHDAA:5919 xref: EMAPA:17379 xref: NCIT:C34322 xref: SCTID:50961009 xref: UMLS:C0231057 {source="ncithesaurus:Urogenital_Sinus"} xref: VHOG:0000414 xref: Wikipedia:Definitive_urogenital_sinus is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000163 {source="MP-def"} ! embryonic cloaca property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png" xsd:anyURI property_value: external_definition "The ventral part of the cloaca after its separation from the rectum, giving rise to the lower part of the bladder in both sexes, to the prostatic portion of the male urethra, and to the urethra and vestibule in the female. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000414", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/urogenital+sinus"} property_value: homology_notes "In mammals the lowly monotremes still have a cloaca. Higher types have done away with this structure and have a separate anal outlet for the rectum. The monotreme cloaca shows the initiation of this subdivision. The cloaca has such includes only the distal part, roughly comparable to the proctodeum. The more proximal part is divided into (1) a large dorsal passage into which the intestine opens, the coprodeum, and (2) a ventral portion, the urodeum with which the bladder connects. (...) the development of the placental mammals recapitulates in many respects the phylogenetic story. In the sexually indifferent stage of placental mammal there is a cloaca. While the indifferent stage still persists, a septum develops, and extends out to the closing membrane. This divides the cloaca into two chambers: a coprodeum continuous with the gut above, and a urodeum or urogenital sinus below.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000414", ontology="VHOG", source="ISBN:978-0721676678 Romer AS, Vertebrate body (1970)p.388-89 and Figure 300", source="http://bgee.unil.ch/"} property_value: terminology_notes "the term 'urogenital sinus' may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal" xsd:string {source="MP"} [Term] id: UBERON:0000165 name: mouth def: "The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks)." [https://github.com/obophenotype/uberon/wiki/The-digestive-tract, Wikipedia:Mouth] subset: efo_slim subset: human_reference_atlas subset: major_organ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "adult mouth" NARROW [] synonym: "cavital oralis" RELATED OMO:0003011 [Wikipedia:Mouth] synonym: "cavitas oris" RELATED [BTO:0001090] synonym: "cavum oris" RELATED [BTO:0001090] synonym: "mouth cavity" RELATED [BTO:0001090] synonym: "oral region" RELATED [EHDAA2:0001326] synonym: "oral vestibule" RELATED [BTO:0001090] synonym: "regio oralis" EXACT OMO:0003011 [BTO:0004698, FMA:49184, FMA:TA] synonym: "rima oris" RELATED [BTO:0001090] synonym: "stoma" RELATED [] synonym: "stomatodaeum" RELATED [VHOG:0000812] synonym: "trophic apparatus" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "vestibule of mouth" RELATED [BTO:0001090] synonym: "vestibulum oris" RELATED [BTO:0001090] xref: AAO:0010355 xref: BTO:0001090 xref: BTO:0004698 xref: CALOHA:TS-1315 xref: EFO:0000825 xref: EHDAA2:0001326 xref: EHDAA:542 xref: EMAPA:16262 xref: FBbt:00003126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:49184 xref: GAID:75 xref: galen:Mouth xref: http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg xref: MA:0000341 xref: MA:0002474 xref: MAT:0000038 xref: MESH:D009055 xref: MIAA:0000038 xref: SCTID:21082005 xref: TADS:0000040 xref: TAO:0000547 xref: TAO:0000590 xref: TGMA:0000131 xref: VHOG:0000280 xref: VHOG:0000812 xref: Wikipedia:Mouth xref: XAO:0003029 xref: ZFA:0000547 xref: ZFA:0000590 is_a: UBERON:0004921 {notes="the mouth contains structures such as jaw skeleton that may not strictly be considered tract parts"} ! subdivision of digestive tract relationship: develops_from UBERON:0035804 ! future mouth relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/06/Mouth_illustration-Otis_Archives.jpg" xsd:anyURI property_value: development_notes "some AOs place this as developing from the stomodeum but we weaken this to developmental contribution, as the mouth includes non-ectodermal derivatives" xsd:string property_value: external_definition "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010355", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "in FMA, the tongue, palate etc are part of the mouth which is itself a subdivision of the face. ZFA includes a separate class 'oral region' which is part of the mouth, but excludes tongue and lips" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "oral" xsd:string property_value: homology_notes "Molecular and developmental cell lineage data suggest that the acoel mouth opening is homologous to the mouth of protostomes and deuterostomes and that the last common ancestor of the Bilateria (the 'urbilaterian') had only this single digestive opening.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000812", ontology="VHOG", source="DOI:10.1038/nature07309 Hejnol A, Martindale MQ, Acoel development indicates the independent evolution of the bilaterian mouth and anus. Nature (2008)", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/661" xsd:anyURI [Term] id: UBERON:0000166 name: oral opening def: "The orifice that connects the mouth to the exterior of the body." [https://github.com/obophenotype/uberon/wiki/The-digestive-tract] subset: uberon_slim subset: vertebrate_core synonym: "mouth" RELATED INCONSISTENT [] synonym: "oral fissure" EXACT [FMA:59806] synonym: "oral orifice" EXACT [FMA:59806] synonym: "oral part of face" RELATED [] xref: FMA:59806 is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0000165 ! mouth property_value: homology_notes "(...) mouth development is very similar in protostomes and 'basal' deuterostomes, whereas the chordate mouth seems to develop at a new position. Recent data for echinoderms and hemichordates further suggest that this change in mouth position may result from change in the influence of a conserved ectodermal patterning system on mouth development. It has been suggested that the mouths of vertebrates and urochordates may constitute a 'new' mouth.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000280", ontology="VHOG", source="DOI:10.1016/j.semcdb.2007.06.002 Christiaen L, Jaszczyszyn Y, Kerfant M, Kanob S, Thermes V, Joly JS, Evolutionary modification of mouth position in deuterostomes. Seminars in Cell and Developmental Biology (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000167 name: oral cavity def: "Anatomical cavity at the start of the digestive tract that that is enclosed by the mouth. The boundaries and contents vary depending on the species. In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present)." [https://github.com/obophenotype/uberon/wiki/The-digestive-tract, https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bucca" RELATED [] synonym: "buccal cavity" EXACT [FMA:20292, ISBN:0073040584] synonym: "cavity of mouth" EXACT [] xref: AAO:0000053 xref: AAO:0000960 xref: BSA:0000107 xref: CALOHA:TS-1315 xref: EFO:0001975 xref: EHDAA2:0001324 xref: EHDAA:6970 xref: EMAPA:17411 xref: EMAPA:18399 xref: EV:0100057 xref: FMA:20292 xref: HAO:0000669 xref: MESH:D009055 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12421 xref: SCTID:181220002 xref: TAO:0001027 xref: TGMA:0000102 xref: UMLS:C0226896 {source="ncithesaurus:Oral_Cavity"} xref: VHOG:0000188 xref: WBbt:0005255 xref: XAO:0000126 xref: ZFA:0001027 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000165 ! mouth property_value: external_definition "Anatomical cavity bounded anteriorly by the mouth and posteriorly by the derivatives of the branchial arches.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000960", ontology="AAO", source="AAO:EJS"} property_value: external_definition "The cavity of the mouth, bounded by the jaw bones and associated structures (muscles and mucosa). [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000188", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/oral+cavity"} property_value: homology_notes "Echinoderms, hemichordates, and chordates are called deuterostomes because the mouth arises not from the blastopore but from a second invagination at the anterior end of the larva that pushes in to connect with the archenteron.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000188", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.32", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000168 name: proximal-distal subdivision of colon def: "A section dividing a colon along a proximal-distal axis." [http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "segment of colon" RELATED [FMA:222905] xref: FMA:222905 is_a: UBERON:0004921 {order="4", source="cjm"} ! subdivision of digestive tract relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:0000170 name: pair of lungs def: "The pair of anatomical structures comprised of a left lung and right lung." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim synonym: "lungs" EXACT [] synonym: "lungs pair" EXACT [] synonym: "pulmones" EXACT OMO:0003011 [FMA:68877, FMA:TA] synonym: "set of lungs" EXACT [] xref: FMA:68877 is_a: UBERON:0034925 ! anatomical collection relationship: part_of UBERON:0001558 {source="FMA-abduced"} ! lower respiratory tract relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000171 name: respiration organ def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585] subset: functional_classification subset: organ_slim synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic] synonym: "breathing organ" EXACT [] synonym: "gas exchange organ" RELATED [] synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "organ of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory organ" EXACT [] synonym: "respiratory system organ" EXACT [OBOL:automatic] xref: SCTID:272626006 xref: SPD:0000428 xref: TGMA:0001247 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000172 name: vomit def: "A bodily fluid consisting of the expulsed contents of the stomach disgorged through the mouth or nose that happens as a result of a vomit reflex." [ENVO:00000338, UBERON:cjm, Wikipedia:Vomiting] synonym: "vomitus" EXACT OMO:0003011 [] xref: ENVO:00000338 xref: galen:Vomitus xref: NCIT:C77666 is_a: UBERON:0036017 ! regurgitated substance [Term] id: UBERON:0000173 name: amniotic fluid def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid." [ENVO:02000021, MP:MP] subset: pheno_slim synonym: "acqua amnii" RELATED OMO:0003011 [BTO:0000068] synonym: "liquor amnii" RELATED OMO:0003011 [BTO:0000068] xref: BTO:0000068 xref: CALOHA:TS-0034 xref: EMAPA:36771 xref: ENVO:02000021 xref: EV:0100123 xref: FMA:305905 xref: GAID:1155 xref: MA:0002893 xref: MESH:D000653 xref: NCIT:C13188 xref: UMLS:C0002638 {source="ncithesaurus:Amniotic_Fluid"} xref: VHOG:0001267 is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0000174 name: excreta alt_id: UBERON:0000324 alt_id: UBERON:0007550 def: "A portion of organism substance that is the product of an excretion process that will be eliminated from the body. An excretion process is elimination by an organism of the waste products that arise as a result of metabolic activity." [GO:0007588, http://orcid.org/0000-0002-6601-2165] synonym: "excreted substance" EXACT [] synonym: "excretion" RELATED [BTO:0000491] synonym: "portion of excreted substance" EXACT [FMA:9674] synonym: "waste substance" EXACT [AEO:0000184] xref: AEO:0000184 xref: BTO:0000491 xref: EHDAA2_RETIRED:0003184 xref: ENVO:02000022 xref: FMA:9674 xref: galen:Excretion is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0000175 name: pleural effusion def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] xref: ENVO:02000033 xref: MESH:D010996 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ncithesaurus:Pleural_Effusion is_a: UBERON:0001087 ! pleural fluid property_value: editor_note "cede to MPATH? Note the ncit class is under finding." xsd:string [Term] id: UBERON:0000176 name: oronasal secretion def: "A bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035] synonym: "oronasal discharge" NARROW [] xref: ENVO:02000035 is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0000177 name: pus def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038, Wikipedia:Pus] synonym: "purulent exudate" RELATED [] xref: ENVO:02000038 xref: galen:Pus xref: ncithesaurus:Pus xref: Wikipedia:Pus is_a: UBERON:0000463 ! organism substance property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/90/Swollen_eye_with_conjunctivitis.jpg" xsd:anyURI property_value: external_ontology_notes "biospecimen in NCIT" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0000178 name: blood def: "A fluid that is composed of blood plasma and erythrocytes." [FMA:9670, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/9, Wikipedia:Blood] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "portion of blood" EXACT [] synonym: "vertebrate blood" EXACT [] synonym: "whole blood" RELATED [BTO:0000089] xref: AAO:0000046 xref: BTO:0000089 xref: CALOHA:TS-0079 xref: EFO:0000296 xref: EHDAA2:0000176 xref: EHDAA:418 xref: EMAPA:16332 xref: ENVO:02000027 xref: EV:0100047 xref: FMA:9670 xref: GAID:965 xref: galen:Blood xref: MA:0000059 xref: MESH:D001769 xref: MIAA:0000315 xref: NCIT:C12434 xref: TAO:0000007 xref: UMLS:C0005767 {source="ncithesaurus:Blood"} xref: VHOG:0000224 xref: Wikipedia:Blood xref: XAO:0000124 xref: ZFA:0000007 is_a: UBERON:0000179 ! haemolymphatic fluid relationship: immediate_transformation_of UBERON:0006596 {source="Bgee:AN"} ! presumptive blood relationship: part_of UBERON:0002390 ! hematopoietic system relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000046", ontology="AAO"} property_value: curator_notes "This class excludes blood analogues, such as the insect analog of blood. See UBERON:0000179 haemolymphatic fluid." xsd:string property_value: external_definition "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000007", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Highly specialized circulating tissue consisting of several types of cells suspended in a fluid medium known as plasma.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000046", ontology="AAO", source="AAO:LAP"} property_value: homology_notes "Recent findings strongly suggest that the molecular pathways involved in the development and function of blood cells are highly conserved among vertebrates and various invertebrates phyla. (...) There is now good reason to believe that, in vertebrates and invertebrates alike, blood cell lineages diverge from a common type of progenitor cell, the hemocytoblast.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000224", ontology="VHOG", source="DOI:10.1146/annurev.cellbio.22.010605.093317 Hartenstein V, Blood cells and blood cell development in the animal kingdom. Annual review of cell and developmental biology (2006) ", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000179 name: haemolymphatic fluid def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." [http://orcid.org/0000-0002-6601-2165] synonym: "blood or blood analog" RELATED [] synonym: "circulating fluid" RELATED [] xref: CARO:0000081 is_a: UBERON:0006314 ! bodily fluid relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0002193 ! hemolymphoid system creation_date: 2009-04-08T04:38:19Z [Term] id: UBERON:0000180 name: lateral lumbar region of abdomen def: "A region of the posterior torso (lower back) beneath the ribs and above the ilium." [Wikipedia:Abdomen#9-region_scheme, Wikipedia:Latus_(anatomy)] synonym: "flank" EXACT [Wikipedia:Latus_(anatomy)] synonym: "lateral region" EXACT [FMA:14603] synonym: "lateral region of abdomen" EXACT [FMA:14603] synonym: "latus" EXACT [FMA:14603] synonym: "regio lateralis" EXACT [FMA:14603] xref: CALOHA:TS-2336 xref: FMA:14603 xref: galen:Flank xref: NCIT:C93028 xref: SCTID:243329008 xref: UMLS:C0230171 {source="ncithesaurus:Flank"} xref: Wikipedia:Latus_(anatomy) is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000916 ! abdomen property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1220.png" xsd:anyURI [Term] id: UBERON:0000199 name: neck of radius def: "The narrow part of the shaft of the radius just below the head." [http://www.medilexicon.com/medicaldictionary.php?t=58913] subset: pheno_slim synonym: "collum radii" EXACT [_rib] synonym: "radial neck" EXACT [FMA:23479] xref: FMA:23479 xref: galen:NeckOfRadius xref: SCTID:181942005 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius [Term] id: UBERON:0000200 name: gyrus def: "A ridge on the cerebral cortex. It is generally surrounded by one or more sulci ." [https://github.com/obophenotype/uberon/issues/573, Wikipedia:Gyrus] subset: pheno_slim synonym: "cerebral gyrus" EXACT [BTO:0002495] synonym: "folia" RELATED OMO:0003004 [] synonym: "folium" RELATED [PHENOSCAPE:wd] synonym: "folium of brain" RELATED [] synonym: "gyri" RELATED OMO:0003004 [BTO:0002495] synonym: "gyri of cerebrum" RELATED OMO:0003004 [BTO:0002495] synonym: "gyrus of cerebral hemisphere" RELATED [FMA:83874] synonym: "gyrus of cerebrum" RELATED [BTO:0002495] synonym: "gyrus of neuraxis" EXACT [FMA:83874] synonym: "neuraxis gyrus" EXACT [FMA:83874] xref: BTO:0002495 xref: FMA:83874 xref: NCIT:C32290 xref: neuronames:1211 xref: SCTID:279165009 xref: UMLS:C0458308 {source="ncithesaurus:Cerebral_Gyrus"} xref: Wikipedia:Gyrus is_a: UBERON:0034768 ! morphological feature relationship: dubious_for_taxon NCBITaxon:10088 relationship: fma_set_term FMA:72015 relationship: part_of UBERON:0000956 ! cerebral cortex property_value: seeAlso "https://github.com/obophenotype/uberon/issues/573" xsd:anyURI [Term] id: UBERON:0000201 name: endothelial blood brain barrier def: "A blood brain barrier that is composed of endothelial cells." [https://orcid.org/0000-0002-6601-2165] xref: NIF_Subcellular:nlx_subcell_100205 is_a: UBERON:0000120 ! blood brain barrier relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-04-10T08:15:44Z [Term] id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] xref: FBbt:00007091 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000120 ! blood brain barrier relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-04-10T08:42:24Z [Term] id: UBERON:0000203 name: pallium alt_id: UBERON:0007333 def: "Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://github.com/obophenotype/uberon/issues/287, ISBN:0471888893, Wikipedia:Pallium_(neuroanatomy)] subset: developmental_classification subset: efo_slim synonym: "area dorsalis telencephali" EXACT [ZFA:0000505] synonym: "dorsal part of telencephalon" EXACT [ISBN:0471888893] synonym: "dorsal telencephalic area" EXACT [ZFA:0000505] synonym: "dorsal telencephalon" EXACT [ZFA:0000505] xref: BTO:0003399 xref: DMBA:15903 xref: EFO:0003534 xref: neuronames:3240 xref: SCTID:369224000 xref: TAO:0000505 xref: TAO:0007007 xref: Wikipedia:Avian_pallium xref: Wikipedia:Pallium_(neuroanatomy) xref: ZFA:0000505 is_a: UBERON:0002616 ! regional part of brain relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0001893 ! telencephalon relationship: present_in_taxon NCBITaxon:7762 {source="PMID:8932866"} property_value: homology_notes "In the anatomy of animals, an avian pallium is the dorsal telencephalon of a bird's brain. Pallium of avian species tend to be relatively large, comprising ~75% of the telencephalic volume." xsd:string {source="Wikipedia:Avian_pallium", taxon="NCBITaxon:8782"} property_value: seeAlso "https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/87" xsd:anyURI property_value: taxon_notes "In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus" xsd:string {source="WP"} creation_date: 2009-04-18T12:03:09Z [Term] id: UBERON:0000204 name: ventral part of telencephalon def: "Ventral part (base region) of the telencephalon." [GO:0021544, GO_REF:0000021, ISBN:0471888893, PMID:12626695] subset: developmental_classification subset: efo_slim synonym: "area ventralis telencephali" EXACT [ZFA:0000304] synonym: "subpallium" EXACT [GO:0021544, ZFA:0000304] synonym: "subpallium" NARROW [BTO:0003401, NCBITaxon:8782] synonym: "ventral telencephalon" EXACT [ZFA:0000304] xref: BTO:0003401 xref: DMBA:15751 xref: EFO:0003522 xref: TAO:0000304 xref: ZFA:0000304 is_a: UBERON:0002616 ! regional part of brain relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0001893 ! telencephalon property_value: external_ontology_notes "BTO term refers specifically to the avian structure" xsd:string {external_ontology="BTO"} creation_date: 2009-04-18T12:12:27Z [Term] id: UBERON:0000205 name: papula def: "A thin protuberance on the surface of the body of an echinoderm containing diverticula of the water vascular system lined by ciliated peritoneum. Along with tube feet, provide the principle gas exchange surfaces.." [ISBN:0030229073] synonym: "papulae" EXACT OMO:0003004 [ISBN:0030229073] synonym: "papulli" EXACT OMO:0003004 [] xref: Wikipedia:Papula is_a: UBERON:0002535 ! gill relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-04-18T01:13:57Z [Term] id: UBERON:0000206 name: pharyngeal gill def: "A gill that develops in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx." [Wikipedia:Gill#Vertebrate_gills] xref: ANISEED:1235300 xref: Wikipedia:Gill#Vertebrate_gills is_a: UBERON:0002535 ! gill relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 property_value: function_notes "Gills are made of filaments which help increase surface area for oxygen exchange" xsd:string property_value: taxon_notes "In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury" xsd:string creation_date: 2009-04-18T01:18:17Z [Term] id: UBERON:0000207 name: compound eye corneal lens def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] synonym: "acellular lens" RELATED [] xref: FBbt:00004199 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000304 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005389 ! transparent eye structure relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0000018 ! compound eye creation_date: 2009-04-18T01:35:32Z [Term] id: UBERON:0000208 name: obsolete cellular lens is_obsolete: true replaced_by: UBERON:0000965 creation_date: 2009-04-18T01:37:39Z [Term] id: UBERON:0000209 name: tetrapod frontal bone def: "The bone forming the forehead and roof of the eye orbit." [ISBN:0-683-40008-8, MP:0000107, PMID:7914451, Wikipedia:Frontal_bone] subset: human_reference_atlas subset: pheno_slim synonym: "frontal" NARROW [AAO:0000206] synonym: "frontal bone" NARROW SENSU [FMA:52734, MA:0001466] synonym: "os frontal" NARROW SENSU [Wikipedia:Frontal_bone] synonym: "os frontale" RELATED OMO:0003011 [Wikipedia:Frontal_bone] xref: AAO:0000206 xref: EMAPA:19016 xref: FMA:52734 xref: GAID:226 xref: MA:0001466 xref: MESH:D005624 xref: NCIT:C32635 xref: SCTID:181793006 xref: UMLS:C0016732 {source="ncithesaurus:Frontal_Bone"} xref: VSAO:0000208 xref: Wikipedia:Frontal_bone is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010428 {source="FMA"} ! flat bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003113 {source="cjm"} ! dermatocranium relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray136.png" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5b/Frontal_bone.png" xsd:anyURI property_value: development_notes "In the mouse the parietal originates from cephalic paraxial mesoderm (Jiang 2000; Morriss-Kay 2001), whereas in the chicken it is traced back to either mesodermal (Noden 1978) or neural crest (Couly 1992, 1993)." xsd:string property_value: taxon_notes "fused in humans, paired in other animals" xsd:string [Term] id: UBERON:0000210 name: tetrapod parietal bone def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [Wikipedia:Parietal_bone, ZFA:0000514] subset: human_reference_atlas subset: pheno_slim synonym: "actinopterygian frontal bone" NARROW [TAO:0000514] synonym: "frontal bone" NARROW [TAO:0000514] synonym: "os parietale" RELATED OMO:0003011 [Wikipedia:Parietal_bone] synonym: "parietal" NARROW SENSU [AAO:0000390] synonym: "parietal bone" NARROW SENSU [FMA:9613] xref: AAO:0000390 xref: EMAPA:18715 xref: FMA:9613 xref: GAID:229 xref: MA:0001469 xref: MESH:D010294 xref: NCIT:C12766 xref: SCTID:181794000 xref: UMLS:C0030558 {source="ncithesaurus:Parietal_Bone"} xref: VHOG:0001326 xref: Wikipedia:Parietal_bone is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0010428 {source="FMA"} ! flat bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0004339 {source="PMID:11523816"} ! vault of skull relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray132.png" xsd:anyURI property_value: homology_notes "The homologization of cranial bones of actinopterygians with those of sarcopterygians based on the bone names established in human anatomy is favored in order to permit the building of phylogenetic relationship schemes beyond the taxonomic boundaries of osteichthyans (including tetrapods). (...) In actinopterygians, the terms parietal and postparietal bones have to replace the commonly used terms 'frontal' and 'parietal' bones for the two paired bones on the skull roof.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001326", ontology="VHOG", source="ISBN:978-3899370805 Arratia G, Schultze HP, Wilson MVH, Mesozoic Fishes 4 - Homology and Phylogeny (2008) p.23-48", source="http://bgee.unil.ch/"} property_value: taxon_notes "The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods[various]. In many non-mammalian tetrapods, they are bordered to the rear by a pair of postparietal bones that may be solely in the roof of the skull, or slope downwards to contribute to the back of the skull, depending on the species. In the living tuatara, and many fossil species, a small opening, the parietal foramen, lies between the two parietal bones. This opening is the location of a third eye in the midline of the skull, which is much smaller than the two main eyes" xsd:string {source="WP"} [Term] id: UBERON:0000211 name: ligament def: "Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000073] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ligament organ" EXACT [FMA:21496] xref: CALOHA:TS-2145 xref: EFO:0001966 xref: EMAPA:35493 xref: FMA:21496 xref: FMA:30319 xref: galen:Ligament xref: MA:0000113 xref: MESH:D008022 xref: NCIT:C13046 xref: SCTID:182358004 xref: TAO:0001682 xref: UMLS:C0023685 {source="ncithesaurus:Ligament"} xref: VHOG:0001272 xref: Wikipedia:Ligament xref: XAO:0004031 xref: ZFA:0001675 is_a: UBERON:0000062 ! organ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg" xsd:anyURI property_value: external_definition "Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA][FMA:21496]." xsd:string {source="FMA:21496"} property_value: external_definition "Portion of connective tissue that connects bone or cartilage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001682", ontology="TAO", source="TAO:wd"} property_value: external_ontology_notes "this groups both skeletal and non-skeletal ligaments. What is called a 'ligament' in many AOs is actually a skeletal ligament" xsd:string property_value: homology_notes "Compared with their Ediacarian predecessor, Cambrian animals in general were characterized by their much stouter bodies. The stoutness of the body is likely due to the formation of ligaments and tendons, which in turn requires the crosslinking of collagen triple helices.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001272", ontology="VHOG", source="PMID:8710894 Ohno S, The notion of the Cambrian pananimalia genome. PNAS (1996)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000212 name: toilet claw def: "A specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw] xref: Wikipedia:Toilet-claw is_a: UBERON:0001705 ! nail relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-05-19T08:19:58Z [Term] id: UBERON:0000218 name: vertebral arch of axis def: "A neural arch that is part of a vertebral bone 2." [OBOL:automatic] synonym: "vertebral foramen of cervical vertebra 2" EXACT [] xref: FMA:24053 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:0001093 ! vertebral bone 2 [Term] id: UBERON:0000219 name: vertebral foramen of atlas synonym: "vertebral foramen of cervical vertebra 1" EXACT [] xref: FMA:24293 xref: SCTID:281228008 xref: Wikipedia:Atlas_(anatomy)#Vertebral_foramen is_a: UBERON:0001131 ! vertebral foramen is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001092 ! vertebral bone 1 [Term] id: UBERON:0000220 name: atlanto-occipital joint def: "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital." [Wikipedia:Atlanto-occipital_joint] synonym: "articulatio atlanto-occipitalis" EXACT [FMA:24939] synonym: "articulatio atlantooccipitalis" RELATED OMO:0003011 [Wikipedia:Atlanto-occipital_joint] synonym: "atlanto occipital joint" EXACT [] synonym: "atlantooccipital joint" EXACT [] synonym: "craniovertebral joint" EXACT [FMA:24939] synonym: "occipito atlantal joint" EXACT [] synonym: "occipito-atlantal joint" EXACT [] xref: FMA:24939 xref: MESH:D001269 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32158 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto xref: SCTID:361831006 xref: UMLS:C0004169 {source="ncithesaurus:Atlanto-occipital_Joint"} xref: Wikipedia:Atlanto-occipital_joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0011138 ! postcranial axial skeletal system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png" xsd:anyURI [Term] id: UBERON:0000221 name: supraauricular point def: "A craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620] synonym: "supra-auricular part of head" EXACT [FMA:224222] xref: FMA:224222 is_a: UBERON:0006983 {source="FMA"} ! anatomical point relationship: part_of UBERON:0004655 ! zygomatic process of temporal bone [Term] id: UBERON:0000301 name: amniotic cavity def: "A closed space between the embryo and the amnion which contains the amniotic fluid and is formed by the fusion of the parts of the anterior and posterior amniotic folds." [MP:0011199] subset: pheno_slim synonym: "cavitas amniotica" RELATED OMO:0003011 [Wikipedia:Amniotic_cavity] xref: BTO:0000025 xref: EHDAA2:0000119 xref: EHDAA:83 xref: EMAPA:16079 xref: FMA:63941 xref: NCIT:C34102 xref: SCTID:280366002 xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"} xref: VHOG:0000855 xref: Wikipedia:Amniotic_cavity is_a: UBERON:0012466 ! extraembryonic cavity is_a: UBERON:0012467 ! enclosed anatomical space relationship: develops_from UBERON:0000087 {source="EHDAA2"} ! inner cell mass relationship: develops_from UBERON:0009742 {source="cjm"} ! proamniotic cavity property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png" xsd:anyURI property_value: external_definition "The closed sac between the embryo and the amnion, containing the amniotic fluid. [Free_Online_Medical_Dictionary]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000855", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/amniotic+cavity"} [Term] id: UBERON:0000303 name: adductor longus def: "An adductor muscle that attaches to the hip and femur. In humans, it is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP, generalized]." [Wikipedia:Adductor_longus_muscle] subset: human_reference_atlas subset: pheno_slim synonym: "adductor longus muscle" EXACT [] synonym: "long adductor muscle" RELATED [BTO:0000029] synonym: "musculus adductor longus" RELATED OMO:0003011 [BTO:0000029, Wikipedia:Adductor_longus_muscle] xref: AAO:0010034 xref: BTO:0000029 xref: EMAPA:36220 xref: FMA:22441 xref: SCTID:181686003 xref: Wikipedia:Adductor_longus_muscle is_a: UBERON:0004252 ! hindlimb stylopod muscle is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI property_value: external_definition "Originates on the iliac portion of the ventral iliac rim and inserts on the lateral surface of the M. adductor magnus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010034", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "definition generalized to accommodate AAO class - 'Originates on the iliac portion of the ventral iliac rim and inserts on the lateral surface of the M. adductor magnus.' [AAO:0010034]" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0000304 name: tendon sheath def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath." [Wikipedia:Tendon_sheath] synonym: "synovial tendon sheath" EXACT [FMA:45087] synonym: "vagina tendinis" RELATED OMO:0003011 [Wikipedia:Tendon_sheath] xref: BTO:0000051 xref: FMA:45087 xref: FMA:76715 xref: NCIT:C96299 xref: SCTID:361885006 xref: UMLS:C0224856 {source="ncithesaurus:Tendon_Sheath"} xref: Wikipedia:Tendon_sheath is_a: UBERON:0004923 ! organ component layer property_value: editor_note "TODO - add layer relations. 'tendon sheath' GAT in FMA." xsd:string [Term] id: UBERON:0000305 name: amnion def: "The thin innermost layer of the extraembryonic membranes that contains the amniotic fluid; the membrane forms a closed sac in which the embryo and later, the fetus, is suspended and protected." [MGI:csmith, MP:0005029] subset: human_reference_atlas subset: pheno_slim synonym: "amnios" EXACT [http://placentation.ucsd.edu/glossfs.html] xref: BTO:0000065 xref: CALOHA:TS-0033 xref: EHDAA2:0000116 xref: EHDAA:136 xref: EMAPA:16109 xref: EV:0100122 xref: FMA:80223 xref: GAID:1298 xref: MESH:D000650 xref: NCIT:C12365 xref: SCTID:181457005 xref: UMLS:C0002630 {source="ncithesaurus:Amnion"} xref: VHOG:0000721 xref: Wikipedia:Amnion is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0005971 {source="ISBN:0073040584"} ! amniotic fold relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI property_value: external_definition "A thin but tough extraembryonic membrane of reptiles, birds and mammals that lines the chorion and contains the fEtus and the amniotic fluid around it. [Biology_Online][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000721", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "amniotic" xsd:string property_value: homology_notes "Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000721", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.187", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000307 name: blastula alt_id: UBERON:0007011 def: "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] subset: inconsistent_with_fma synonym: "blastosphere" RELATED [Wikipedia:Blastula] synonym: "blastula embryo" EXACT [BILA:0000059] xref: BILA:0000059 xref: BTO:0000128 xref: GAID:1294 xref: MESH:D036703 xref: OGEM:000006 xref: Wikipedia:Blastula is_a: UBERON:0000922 ! embryo relationship: develops_from UBERON:0007010 ! cleaving embryo property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png" xsd:anyURI property_value: editor_note "TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula" xsd:string [Term] id: UBERON:0000309 name: body wall def: "The external portion of an animal body derived from ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385] subset: pheno_slim synonym: "trunk wall" NARROW [FMA:10427] synonym: "wall fo trunk" EXACT [FMA:10427] synonym: "wall of trunk" NARROW [FMA:10427] xref: BTO:0000139 xref: EMAPA:32761 xref: FMA:10427 xref: galen:BodyWall xref: SCTID:281483004 is_a: UBERON:0000475 ! organism subdivision property_value: external_ontology_notes "the BTO class refers to earthworms." xsd:string {external_ontology="BTO"} property_value: taxon_notes "defined generically to encompass both vertebrates and invertebrates" xsd:string [Term] id: UBERON:0000310 name: breast def: "The upper ventral region of the torso of an organism." [Wikipedia:Breast] subset: pheno_slim synonym: "mamma" RELATED OMO:0003011 [Wikipedia:Breast] synonym: "mammary part of chest" EXACT [FMA:9601] synonym: "mammary region" EXACT [FMA:9601] xref: BTO:0000149 xref: CALOHA:TS-2083 xref: EV:0100124 xref: FMA:9601 xref: GAID:33 xref: galen:Breast xref: MESH:D001940 xref: NCIT:C12971 xref: SCTID:181131000 xref: UMLS:C0006141 {source="ncithesaurus:Breast"} xref: Wikipedia:Breast is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001443 ! chest property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6e/Closeup_of_female_breast.jpg" xsd:anyURI property_value: taxon_notes "The breasts of a female primate's body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's." xsd:string {source="WP,unvetted"} [Term] id: UBERON:0000311 name: extensor muscle def: "A skeletal muscle whose contraction extends or stretches a body part." [http://www.thefreedictionary.com/extensor+muscle, https://github.com/obophenotype/uberon/issues/57] comment: Any of the muscles that increase the angle between segments of a limb, E.g. straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus along the back of the forearm to the metacarpal bones at the back of the hand. [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle] subset: pheno_slim synonym: "extensor" RELATED [] xref: BTO:0000151 xref: FMA:75000 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010962 ! extensor pre-muscle mass relationship: part_of UBERON:0000026 ! appendage [Term] id: UBERON:0000312 name: inner cambium layer of periosteum synonym: "cambial layer" EXACT [FMA:234358] synonym: "cambial layer of periosteum" EXACT [FMA:234358] synonym: "cambium" EXACT [] synonym: "cambium layer of periosteum" EXACT [FMA:234358] synonym: "inner cambial layer of periosteum" EXACT [FMA:234358] synonym: "internal layer of periosteum" EXACT [] synonym: "internal periosteum" EXACT [] synonym: "osteogenic layer of periosteum" EXACT [Wikipedia:Periosteum] xref: FMA:234358 is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum [Term] id: UBERON:0000313 name: portion of cartilage tissue in tibia def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] synonym: "cartilage of tibia" RELATED [FMA:33923] synonym: "tibial cartilage" EXACT [] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0004270 ! lower leg connective tissue is_a: UBERON:0007391 ! pelvic appendage cartilage tissue relationship: part_of UBERON:0000979 ! tibia property_value: curator_notes "This class represents a portion of cartilage tissue located in the tibia, *not* the cartilaginous condensation of an emrbyonic tibia" xsd:string [Term] id: UBERON:0000314 name: cecum mucosa def: "A mucosa that is part of a cecum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "caecum mucosa" EXACT [OBOL:automatic] synonym: "caecum mucosa of organ" EXACT [OBOL:automatic] synonym: "caecum mucous membrane" EXACT [OBOL:automatic] synonym: "caecum organ mucosa" EXACT [OBOL:automatic] synonym: "cecal mucosa" EXACT [FMA:14998] synonym: "cecum mucosa of organ" EXACT [OBOL:automatic] synonym: "cecum mucous membrane" EXACT [OBOL:automatic] synonym: "cecum organ mucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucosa of organ" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucous membrane" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of caecum" EXACT [OBOL:automatic] synonym: "mucosa of cecum" EXACT [OBOL:automatic] synonym: "mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of caecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of cecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "mucous membrane of caecum" EXACT [OBOL:automatic] synonym: "mucous membrane of cecum" EXACT [OBOL:automatic] synonym: "mucous membrane of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "organ mucosa of caecum" EXACT [OBOL:automatic] synonym: "organ mucosa of cecum" EXACT [OBOL:automatic] synonym: "organ mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] xref: BTO:0000213 xref: FMA:14998 is_a: UBERON:0000317 ! colonic mucosa relationship: part_of UBERON:0001153 ! caecum relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000315 name: subarachnoid space def: "The space between the arachnoid and pia mater." [GOC:add, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1168/, Wikipedia:Subarachnoid_space] subset: pheno_slim synonym: "cavitas subarachnoidea" RELATED OMO:0003011 [BTO:0000230] synonym: "cavum subarachnoideale" RELATED OMO:0003011 [Wikipedia:Subarachnoid_space] synonym: "spatium leptomeningeum" RELATED OMO:0003011 [BTO:0000230] synonym: "spatium subarachnoideum" RELATED OMO:0003011 [BTO:0000230, Wikipedia:Subarachnoid_space] synonym: "subarachnoid cavity" RELATED [BTO:0000230] synonym: "subarachnoid space of central nervous system" EXACT [] synonym: "subarachnoid space of CNS" EXACT [] synonym: "subarachnoid space of neuraxis" EXACT [FMA:322060] xref: BTO:0000230 xref: EMAPA:32666 xref: FMA:83716 xref: GAID:689 xref: MESH:D013346 xref: SCTID:362311001 xref: Wikipedia:Subarachnoid_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0010743 ! meningeal cluster property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png" xsd:anyURI [Term] id: UBERON:0000316 name: cervical mucus def: "A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [BTO:0000242, Wikipedia:Cervix#Cervical_mucus, Wikipedia:Mucus#Reproductive_system] synonym: "cervix mucus" EXACT [OBOL:automatic] xref: BTO:0000242 xref: FMA:83689 xref: MESH:D002582 xref: Wikipedia:Mucus#Reproductive_system is_a: UBERON:0000912 ! mucus [Term] id: UBERON:0000317 name: colonic mucosa alt_id: UBERON:0003347 alt_id: UBERON:0004981 def: "Mucosa that is part of a colon. The mucosa of the colon is lined by a simple columnar epithelium with a thin brush border and numerous goblet cells." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas synonym: "colon mucosa" EXACT [FMA:14984] synonym: "colon mucous membrane" EXACT [OBOL:automatic] synonym: "colonic mucosa" EXACT [] synonym: "colonic mucous membrane" EXACT [FMA:14984] synonym: "large bowel mucosa" EXACT [OBOL:automatic] synonym: "mucosa of colon" EXACT [FMA:14984] synonym: "mucosa of large bowel" EXACT [OBOL:automatic] xref: BTO:0000271 xref: CALOHA:TS-0164 xref: EFO:0003038 xref: EMAPA:27375 xref: FMA:14984 xref: FMA:85388 xref: MA:0003194 xref: SCTID:362157008 is_a: UBERON:0001207 ! mucosa of large intestine relationship: part_of UBERON:0001155 ! colon relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000319 name: cytotrophoblast def: "The inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [http://placentation.ucsd.edu/glossfs.html, Wikipedia:Cytotrophoblast] synonym: "cellular trophoblast" EXACT [FMA:83039] synonym: "cytotrophoblastic cell" RELATED [FMA:83039] synonym: "cytotrophoblastic cell layer" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "cytotrophoblastus" RELATED OMO:0003011 [Wikipedia:Cytotrophoblast] synonym: "Langhans' layer" RELATED [Wikipedia:Cytotrophoblast] synonym: "layer of Langhans" RELATED [Wikipedia:Cytotrophoblast] xref: BTO:0000322 xref: EHDAA:127 xref: EHDAA:152 xref: EHDAA:89 xref: EMAPA:16067 xref: FMA:83039 xref: NCIT:C33919 xref: SCTID:308841008 xref: UMLS:C0230960 {source="ncithesaurus:Cytotrophoblast"} xref: VHOG:0000683 xref: Wikipedia:Cytotrophoblast is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 ! trophoblast property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png" xsd:anyURI property_value: editor_note "todo - unify with EHDAA2, which distinguishes multiple types of cytotrophoblast" xsd:string property_value: external_definition "A derivative layer of the trophoblast, the cells of which retain their boundaries and contribute to the extraembryonic mesoderm [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.189, see_Kardong_KV][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000683", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000320 name: duodenal mucosa alt_id: UBERON:0003348 def: "A mucosa that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "doudenal mucosa" EXACT [FMA:14942] synonym: "duodenal mucous membrane" EXACT [FMA:14942] synonym: "duodenum mucosa" RELATED [BTO:0000367] synonym: "mucosa of duodenum" EXACT [OBOL:automatic] synonym: "mucous membrane of duodenum" EXACT [OBOL:automatic] xref: BTO:0000367 xref: CALOHA:TS-0213 xref: EMAPA:27235 xref: FMA:14942 xref: MA:0003207 xref: SCTID:362146003 is_a: UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0002114 ! duodenum relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000323 name: late embryo def: "An embryo that is at the late embryonic stage; this stage covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching." [https://orcid.org/0000-0003-3308-6245] subset: efo_slim subset: pheno_slim synonym: "embryo late growth stage" RELATED [BTO:0000449] synonym: "embryo late stage" RELATED [BTO:0000449] synonym: "fetus" NARROW [BTO:0000449] xref: BTO:0000449 xref: CALOHA:TS-0360 xref: EFO:0001323 xref: FBbt:00005333 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63919 xref: GAID:552 xref: MESH:D005333 xref: NCIT:C13235 xref: SCTID:83418008 xref: UMLS:C0015965 {source="ncithesaurus:Fetus"} is_a: UBERON:0000922 ! embryo property_value: editor_note "TODO - check fetus/embryo. WP: An embryo is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus." xsd:string property_value: external_definition "Fetal structure, which is a developmental form of a vertebrate animal at any given time point from 8 weeks of gestation to birth (or hatching). Examples: There is only one fetus[FMA:63919]." xsd:string {source="FMA:63919"} [Term] id: UBERON:0000325 name: gastric gland def: "The branched tubular glands found in the mucosa of the fundus and body of the stomach which contain parietal cells that secrete hydrochloric acid and zymogenic cells that produce pepsin." [MGI:anna] subset: organ_slim subset: pheno_slim xref: BTO:0000503 xref: EMAPA:27181 xref: FMA:14919 is_a: UBERON:0002365 {source="cjm"} ! exocrine gland is_a: UBERON:0003294 ! gland of foregut relationship: part_of UBERON:0006924 {source="ISBN:0073040584"} ! stomach glandular epithelium [Term] id: UBERON:0000326 name: pancreatic juice def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157] synonym: "pancreatic fluid" RELATED [] synonym: "pancreatic secretion" RELATED [] synonym: "succus pancreaticus" RELATED [BTO:0000504] xref: BTO:0000504 xref: CALOHA:TS-2235 xref: FMA:62973 xref: GAID:1166 xref: MESH:D010189 is_a: UBERON:0000456 ! secretion of exocrine gland [Term] id: UBERON:0000328 name: gut wall def: "The wall of the digestive tract. This encompasses all parts of the digestive tract with the exception of the lumen (cavity)." [http://orcid.org/0000-0002-6601-2165] synonym: "digestive tract wall" EXACT [] synonym: "wall of alimentary tract" RELATED [] synonym: "wall of digestive tract" EXACT [] synonym: "wall of gut" EXACT [FMA:45653] xref: BTO:0000547 xref: FMA:45653 is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0001555 ! digestive tract property_value: curator_notes "We model the digestive tract as consisting of two parts: the wall and the lumen." xsd:string [Term] id: UBERON:0000329 name: hair root def: "The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [BTO:0000555, Wikipedia:Hair_root] synonym: "root of hair" EXACT [FMA:70730] xref: BTO:0000555 xref: CALOHA:TS-0433 xref: FMA:70730 xref: NCIT:C32707 xref: NCIT:C32711 xref: UMLS:C1182707 {source="ncithesaurus:Hair_Root"} xref: Wikipedia:Hair_root is_a: UBERON:0000021 ! cutaneous appendage relationship: part_of UBERON:0001037 ! strand of hair property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray944.png" xsd:anyURI [Term] id: UBERON:0000331 name: ileal mucosa def: "A mucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "ileal mucous membrane" EXACT [FMA:14956] synonym: "ileum mucosa" EXACT [FMA:14956, OBOL:automatic] synonym: "ileum mucosa of organ" EXACT [OBOL:automatic] synonym: "ileum mucous membrane" EXACT [OBOL:automatic] synonym: "ileum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of ileum" EXACT [OBOL:automatic] synonym: "mucosa of organ of ileum" EXACT [OBOL:automatic] synonym: "mucous membrane of ileum" EXACT [OBOL:automatic] synonym: "organ mucosa of ileum" EXACT [OBOL:automatic] xref: BTO:0000619 xref: CALOHA:TS-0470 xref: EMAPA:35424 xref: FMA:14956 xref: MA:0003216 xref: SCTID:85458007 is_a: UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0002116 ! ileum relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000332 name: yellow bone marrow def: "Bone marrow in which the fat cells predominate in the meshes of the reticular network." [http://medical-dictionary.thefreedictionary.com/Yellow+Marrow] synonym: "fat marrow" RELATED [BTO:0000635] synonym: "medulla ossium flava" EXACT OMO:0003011 [BTO:0000635] synonym: "yellow marrow" EXACT [BTO:0000635] xref: BTO:0000635 xref: FMA:74596 xref: SCTID:328639002 xref: SCTID:5023006 is_a: UBERON:0002371 ! bone marrow relationship: part_of UBERON:0007195 ! stroma of bone marrow [Term] id: UBERON:0000333 name: intestinal gland def: "A gland that is part of the intestinal mucosa. Examples include the intestinal crypts, duodenal gland[cjm]." [https://orcid.org/0000-0002-6601-2165] subset: organ_slim synonym: "bowel mucosa gland" EXACT [OBOL:automatic] synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic] synonym: "bowel mucous membrane gland" EXACT [OBOL:automatic] synonym: "bowel organ mucosa gland" EXACT [OBOL:automatic] synonym: "gland of bowel mucosa" EXACT [OBOL:automatic] synonym: "gland of bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "gland of bowel mucous membrane" EXACT [OBOL:automatic] synonym: "gland of bowel organ mucosa" EXACT [OBOL:automatic] synonym: "gland of intestinal mucosa" EXACT [OBOL:automatic] synonym: "gland of intestine mucosa" EXACT [OBOL:automatic] synonym: "gland of intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "gland of intestine mucous membrane" EXACT [OBOL:automatic] synonym: "gland of intestine organ mucosa" EXACT [OBOL:automatic] synonym: "gland of mucosa of bowel" EXACT [OBOL:automatic] synonym: "gland of mucosa of intestine" EXACT [OBOL:automatic] synonym: "gland of mucosa of organ of bowel" EXACT [OBOL:automatic] synonym: "gland of mucosa of organ of intestine" EXACT [OBOL:automatic] synonym: "gland of mucous membrane of bowel" EXACT [OBOL:automatic] synonym: "gland of mucous membrane of intestine" EXACT [OBOL:automatic] synonym: "gland of organ mucosa of bowel" EXACT [OBOL:automatic] synonym: "gland of organ mucosa of intestine" EXACT [OBOL:automatic] synonym: "glandula intestinalis" EXACT [FMA:15052] synonym: "glandulae intestinales" RELATED [] synonym: "intestinal mucosa gland" EXACT [OBOL:automatic] synonym: "intestine mucosa gland" EXACT [OBOL:automatic] synonym: "intestine mucosa of organ gland" EXACT [OBOL:automatic] synonym: "intestine mucous membrane gland" EXACT [OBOL:automatic] synonym: "intestine organ mucosa gland" EXACT [OBOL:automatic] synonym: "mucosa of bowel gland" EXACT [OBOL:automatic] synonym: "mucosa of intestine gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of bowel gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestine gland" EXACT [OBOL:automatic] synonym: "mucous membrane of bowel gland" EXACT [OBOL:automatic] synonym: "mucous membrane of intestine gland" EXACT [OBOL:automatic] synonym: "organ mucosa of bowel gland" EXACT [OBOL:automatic] synonym: "organ mucosa of intestine gland" EXACT [OBOL:automatic] xref: BTO:0000640 xref: FMA:15052 xref: SCTID:266297002 is_a: UBERON:0003408 ! gland of digestive tract relationship: part_of UBERON:0001242 ! intestinal mucosa property_value: external_ontology_notes "Note that some sources treat 'intestinal gland' as synonymous with crypts" xsd:string [Term] id: UBERON:0000341 name: throat def: "In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [Wikipedia:Throat] subset: pheno_slim synonym: "gula" RELATED OMO:0003011 [] xref: BTO:0000828 xref: EMAPA:37973 {source="MA:th"} xref: FMA:228738 xref: NCIT:C54272 xref: UMLS:C0230069 {source="ncithesaurus:Throat"} xref: Wikipedia:Throat is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0000974 ! neck property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/1/16/Throat_Diagram.png" xsd:anyURI property_value: has_relational_adjective "gular" xsd:string property_value: taxon_notes "The hyoid bone and the clavicle are the only bones located in the throat of mammals." xsd:string [Term] id: UBERON:0000344 name: mucosa def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]." [Wikipedia:Mucous_membrane] subset: pheno_slim synonym: "mucosa of organ" EXACT [FMA:85355] synonym: "mucosa of organ part" EXACT [FMA:85358] synonym: "mucosal region" EXACT [FMA:85358] synonym: "mucous membrane" EXACT [FMA:85355] synonym: "organ mucosa" EXACT [FMA:85355] synonym: "region of mucosa" RELATED [FMA:85358] synonym: "tunica mucosa" RELATED OMO:0003011 [BTO:0000886, Wikipedia:Mucous_membrane] xref: AEO:0000199 xref: BTO:0000886 xref: CALOHA:TS-2031 xref: EHDAA2_RETIRED:0003234 xref: EV:0100382 xref: FMA:85355 xref: FMA:85358 xref: GAID:297 xref: galen:Mucosa xref: MESH:D009092 xref: NCIT:C13166 xref: SCTID:361693009 xref: UMLS:C0026724 {source="ncithesaurus:Mucosa"} xref: Wikipedia:Mucous_membrane is_a: UBERON:0004923 ! organ component layer relationship: mutually_spatially_disjoint_with UBERON:0000009 ! submucosa property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI property_value: external_ontology_notes "FMA has mucosa vs region of mucosa; these are subtypes of Mucosa: Mucosa of gallbladder, tongue, .... The following are subtypes of Region of mucosa: Mucosa of zone of stomach, trachea, bronchus, dorsum of tongue.... Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "mucosal" xsd:string [Term] id: UBERON:0000345 name: myelin def: "A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath." [Wikipedia:Myelin] subset: pheno_slim xref: BTO:0000894 xref: FMA:62977 xref: ncithesaurus:Myelin xref: Wikipedia:Myelin is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001016 ! nervous system relationship: present_in_taxon NCBITaxon:6340 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} relationship: present_in_taxon NCBITaxon:6681 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} relationship: present_in_taxon NCBITaxon:7742 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} property_value: editor_note "cede to other ontology. Retired in ncit" xsd:string [Term] id: UBERON:0000346 name: obsolete myelin membrane synonym: "myelinated plasma membrane of Schwann cell" EXACT [FMA:73417] property_value: external_ontology_notes "BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell" xsd:string {external_ontology="BTO"} is_obsolete: true consider: BTO:0000895 consider: FMA:73417 [Term] id: UBERON:0000347 name: entire myelin sheath def: "The insulating envelope that surrounds nerve fibers or axons." [MP:0003871] subset: pheno_slim synonym: "medullary sheath" RELATED [BTO:0000900] xref: BTO:0000900 xref: CALOHA:TS-2363 xref: FMA:62983 xref: GAID:731 xref: GO:0043209 xref: MESH:D009186 xref: NCIT:C13261 xref: UMLS:C0026973 {source="ncithesaurus:Myelin_Sheath"} is_a: UBERON:0005162 ! multi cell part structure property_value: editor_note "do not cede to GO until GO includes has_part link to myelin" xsd:string [Term] id: UBERON:0000348 name: ophthalmic nerve def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [MP:0009798, Wikipedia:Ophthalmic_nerve] comment: Terminology notes. This nerve is known by a ridiculous number of names[http://palaeos.com/vertebrates/glossary/glossaryPo.html] subset: human_reference_atlas subset: pheno_slim synonym: "ciliary nerve" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] synonym: "cranial nerve V, branch V1" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ethmoidal nerve" RELATED [Wikipedia:Ophthalmic_nerve] synonym: "first branch of fifth cranial nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "first division of fifth cranial nerve" EXACT [FMA:52621] synonym: "first division of trigeminal nerve" EXACT [FMA:52621] synonym: "nervus ophthalmicus (V1)" EXACT [FMA:52621] synonym: "nervus ophthalmicus (Va)" EXACT [FMA:52621] synonym: "nervus ophthalmicus [v1]" EXACT OMO:0003011 [FMA:52621, FMA:TA] synonym: "nervus ophthalmicus [va]" EXACT OMO:0003011 [FMA:52621, FMA:TA] synonym: "ophthalmic division" RELATED [BTO:0000926, Wikipedia:Ophthalmic_nerve] synonym: "ophthalmic division [V1]" EXACT [FMA:52621] synonym: "ophthalmic division [Va]" EXACT [FMA:52621] synonym: "ophthalmic division of fifth cranial nerve" EXACT [FMA:52621] synonym: "ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621] synonym: "ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621] synonym: "ophthalmic nerve [V1]" EXACT [FMA:52621] synonym: "ophthalmic nerve [Va]" EXACT [FMA:52621] synonym: "opthalmic nerve" EXACT [Wikipedia:Ophthalmic_nerve] synonym: "profundal nerve" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "profundus" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] synonym: "profundus nerve" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] synonym: "ramus opthalmicus profundus (ramus V1)" EXACT [AAO:0010648] synonym: "rostral branch of trigeminal nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "trigeminal nerve ophthalmic division" RELATED [EMAPA:17800] synonym: "trigeminal V nerve ophthalmic division" EXACT [MA:0001104] xref: AAO:0010648 xref: BTO:0000926 xref: EHDAA2:0002088 xref: EHDAA:3744 xref: EMAPA:17800 xref: FMA:52621 xref: GAID:837 xref: MA:0001104 xref: MESH:D009882 xref: NCIT:C33215 xref: SCTID:280210000 xref: UMLS:C0029082 {source="ncithesaurus:Ophthalmic_Nerve"} xref: VHOG:0001349 xref: Wikipedia:Ophthalmic_nerve is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region relationship: develops_from UBERON:0035597 ! profundal placode relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Sensory medial ramus of the trigeminal nerve.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010648", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "The profundus nerve is a distinct nerve only in fishes. (...) In mammals, the profundus nerve is the same as the most rostral (ophthalmic) branch of the trigeminal nerve.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001349", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.177", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000349 name: limbic system def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system] comment: includes the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia] subset: non_informative subset: pheno_slim synonym: "visceral brain" RELATED [ISBN:0123813611] xref: BTO:0000928 xref: CALOHA:TS-1307 xref: FMA:242000 xref: GAID:615 xref: MESH:D008032 xref: NCIT:C94541 xref: neuronames:2055 xref: SCTID:361342009 xref: UMLS:C0023715 {source="ncithesaurus:Limbic_System"} xref: Wikipedia:Limbic_system is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001890 ! forebrain property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg" xsd:anyURI property_value: editor_note "obsoletion proposes. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity." xsd:string [Term] id: UBERON:0000351 name: nuchal ligament def: "A fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebrae." [Wikipedia:Nuchal_ligament] synonym: "ligament of neck" EXACT [FMA:13427] synonym: "ligamentum nuchae" EXACT OMO:0003011 [FMA:13427] synonym: "paddywhack" NARROW [NCBITaxon:9895, Wikipedia:Paddywhack] synonym: "paxwax" RELATED [] xref: BTO:0000952 xref: EMAPA:19207 xref: FMA:13427 xref: SCTID:166962007 xref: Wikipedia:Nuchal_ligament is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0008846 ! skeletal ligament relationship: never_in_taxon NCBITaxon:9596 relationship: part_of UBERON:0012477 {source="BTO"} ! dorsal part of neck relationship: present_in_taxon NCBITaxon:9606 relationship: present_in_taxon NCBITaxon:9608 relationship: present_in_taxon NCBITaxon:9788 relationship: present_in_taxon NCBITaxon:9895 property_value: function_notes "As it is required for running, not all animals have a nuchal ligament" xsd:string property_value: taxon_notes "In humans it is a tendon-like structure that has developed independently in humans and other animals well adapted for running. In some four legged animals, particularly ungulates, the nuchal ligament serves to sustain the weight of the head" xsd:string [Term] id: UBERON:0000353 name: parenchyma def: "Functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues." [Wikipedia:Parenchyma] xref: BTO:0000999 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: BTO:0001539 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA:3015 xref: EHDAA:3905 xref: EHDAA:3999 xref: EHDAA:4005 xref: EHDAA:6899 xref: EHDAA:6903 xref: EHDAA:6994 xref: EHDAA:8086 xref: EHDAA:9182 xref: EHDAA:9190 xref: EHDAA:9196 xref: EHDAA:9202 xref: FMA:45732 xref: NCIT:C74601 xref: UMLS:C0933845 {source="ncithesaurus:Parenchyma"} xref: Wikipedia:Parenchyma is_a: UBERON:0000064 ! organ part property_value: development_notes "Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin" xsd:string {source="WP"} property_value: external_ontology_notes "the FMA definition is more restrictive, and limits this to solid organs. This would seem to cause problems for the lung parenchyma, except FMA classifies Lung as solid rather than cavitated" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "parenchymal" xsd:string [Term] id: UBERON:0000355 name: pharyngeal mucosa alt_id: UBERON:0003344 def: "A mucosa that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of pharynx" EXACT [FMA:55031, OBOL:automatic] synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047] synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic] synonym: "pharynx mucosa" EXACT [OBOL:automatic] synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa pharyngea" EXACT OMO:0003011 [FMA:55031, FMA:TA] synonym: "tunica mucosa pharyngis" EXACT [] xref: BTO:0001047 xref: EMAPA:26957 xref: FMA:55031 xref: MA:0003143 xref: SCTID:362121003 is_a: UBERON:0004785 ! respiratory system mucosa relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0000358 name: blastocyst def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst] subset: efo_slim synonym: "blastocystis" RELATED OMO:0003011 [Wikipedia:Blastocyst] synonym: "blastula" RELATED [FMA:83041] xref: BTO:0001099 xref: CALOHA:TS-0076 xref: EFO:0000295 xref: EMAPA:36035 xref: EV:0100394 xref: FMA:83041 xref: GAID:1153 xref: MESH:D001755 xref: NCIT:C13739 xref: SCTID:308837009 xref: UMLS:C1281743 {source="ncithesaurus:Blastocyst"} xref: Wikipedia:Blastocyst is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000085 ! morula relationship: part_of UBERON:0000307 ! blastula property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg" xsd:anyURI property_value: editor_note "Gilbert fig11.32 has blastocyst has giving rise to ICM and trophoblast (which in this source is a synonym for trophectoderm)" xsd:string [Term] id: UBERON:0000359 name: preputial gland def: "An aired, lobulated, modified sebaceous glands located in the inguinal region adjacent to the penis and vagina, with pheromonal functions in male rodents; in males, the preputial gland empties into the preputial cavity and in females, the preputial (aka clitoral) gland duct empties into the clitoral fossa." [MP:0013329] subset: organ_slim subset: pheno_slim synonym: "clitoral/preputial gland" RELATED [MA:0003044] synonym: "glandulae preputiales" EXACT OMO:0003011 [FMA:71652, FMA:TA] synonym: "preputial glands" EXACT [FMA:71652] synonym: "preputial glands set" EXACT [FMA:71652] xref: CALOHA:TS-0824 xref: EMAPA:35701 xref: MA:0003044 xref: NCIT:C22174 xref: SCTID:278916008 xref: UMLS:C1947929 {source="ncithesaurus:Prepucial_Gland_MMHCC"} xref: Wikipedia:Preputial_gland is_a: UBERON:0003937 ! reproductive gland is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland relationship: fma_set_term FMA:71652 relationship: never_in_taxon NCBITaxon:9606 {source="ISBN:0123813611", source="MP:0013329"} property_value: external_definition "the paired, lobulated, modified sebaceous glands of the corona, the neck of the glans penis, and the inner surface of the prepuce with pheromonal functions in male rodents; male preputial secretions strongly attract females, may accelerate estrus, and have been implicated in intermale aggression; homologous to the clitoral glands (aka female preputial glands) in female rodents; there is no true anatomical equivalent in humans." xsd:string {external_class="MP:0002717", ontology="MP"} property_value: homology_notes "There is debate about whether humans have functional homologues to preputial glands." xsd:string {source="Wikipedia:Preputial_gland#Human_homologoues"} [Term] id: UBERON:0000360 name: obsolete rectal gland is_obsolete: true consider: UBERON:0004757 consider: UBERON:0004758 consider: UBERON:0004759 consider: UBERON:0004760 [Term] id: UBERON:0000361 name: red bone marrow def: "The red vascular substance consisting of connective tissue and blood vessels, containing primitive blood cells, macrophages, megakaryocytes, and fat cells. Red marrow is found in the cavities of many bones. It manufactures and releases leukocytes and erythrocytes into the bloodstream." [http://medical-dictionary.thefreedictionary.com/red+marrow] synonym: "medulla ossium rubra" EXACT OMO:0003011 [BTO:0001160] synonym: "parenchyma of none marrow marrow" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "parenchymal red marrow" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "red marrow" EXACT [BTO:0001160] xref: BTO:0001160 xref: FMA:74595 xref: SCTID:328538003 xref: SCTID:75330005 is_a: UBERON:0002371 ! bone marrow relationship: part_of UBERON:0012429 ! hematopoietic tissue [Term] id: UBERON:0000362 name: renal medulla def: "The inner portion of the kidney consisting of the renal pyramids." [ISBN:0-683-40008-8, MGI:smb, MP:0003014] comment: Note that 'renal medulla' is not synonymous with 'medullary region of kidney'. The former is composed of kidney pyramids only, while the latter covers kidney pyramids and renal columns, which are histologically different. subset: human_reference_atlas subset: pheno_slim synonym: "kidney medulla" EXACT [OBOL:automatic] synonym: "medulla of kidney" EXACT [OBOL:automatic] synonym: "medulla renalis" EXACT OMO:0003011 [FMA:74268, FMA:TA] synonym: "medullary pyramids" RELATED OMO:0003004 [FMA:74268] synonym: "pyramides renales" EXACT OMO:0003011 [FMA:74268, FMA:TA] synonym: "renal marrow" RELATED [BTO:0001167] synonym: "renal medullae" EXACT OMO:0003004 [FMA:86327] synonym: "renal medullae set" EXACT OMO:0003004 [FMA:86327] synonym: "renal pyramids" EXACT OMO:0003004 [FMA:74268] synonym: "renal pyramids set" EXACT OMO:0003004 [FMA:74268] xref: BTO:0001167 xref: CALOHA:TS-1157 xref: EMAPA:19279 xref: GAID:425 xref: galen:MedullaOfKidney xref: MA:0000373 xref: MESH:D007679 xref: NCIT:C12740 xref: SCTID:30737000 xref: UMLS:C0022664 {source="ncithesaurus:Renal_Medulla"} xref: Wikipedia:Renal_medulla is_a: UBERON:0000958 ! medulla of organ relationship: part_of UBERON:0002113 ! kidney relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: structure_notes "The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water" xsd:string [Term] id: UBERON:0000363 name: reticuloendothelial system def: "A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES[WP]." [Wikipedia:Reticuloendothelial_system] synonym: "lymphoreticular" RELATED [BioMart:BioMart] synonym: "lymphoreticular system" EXACT [Wikipedia:Reticuloendothelial_system] synonym: "mononuclear phagocyte system" EXACT [FMA:84189] synonym: "RES" EXACT [Wikipedia:Reticuloendothelial_system] synonym: "reticuloendothelial system" EXACT [FMA:84189] xref: BTO:0001174 xref: EV:0100048 xref: FMA:84189 xref: GAID:1004 xref: MESH:D012157 xref: NCIT:C12780 xref: SCTID:278874002 xref: UMLS:C0035287 {source="ncithesaurus:Reticuloendothelial_System"} xref: Wikipedia:Reticuloendothelial_system is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002405 ! immune system relationship: part_of UBERON:0006804 ! reticular tissue [Term] id: UBERON:0000364 name: obsolete rootlet synonym: "fila radicularia" EXACT OMO:0003011 [FMA:76787, FMA:TA] synonym: "Rootlets" EXACT [FMA:76787] synonym: "Rootlets set" EXACT [FMA:76787] xref: BTO:0001192 is_obsolete: true consider: FMA:76787 [Term] id: UBERON:0000365 name: urothelium def: "An epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [https://github.com/obophenotype/uberon/issues/92, Wikipedia:Urothelium] subset: pheno_slim synonym: "epithelium transitionale" EXACT [FMA:63914] synonym: "transitional epithelium" BROAD INCONSISTENT [] synonym: "transitional epithelium" EXACT [FMA:63914, https://github.com/obophenotype/uberon/issues/92] synonym: "uroepithelium" EXACT [FMA:67695] xref: BTO:0003906 xref: CALOHA:TS-1096 xref: EMAPA:37978 {source="MA:th"} xref: FMA:63914 xref: FMA:67695 xref: GAID:935 xref: MESH:D019459 xref: NCIT:C12884 xref: SCTID:30117005 xref: SCTID:57789003 xref: UMLS:C0225339 {source="ncithesaurus:Transitional_Epithelium"} xref: UMLS:C0227598 {source="ncithesaurus:Urothelium"} xref: Wikipedia:Transitional_epithelium xref: Wikipedia:Urothelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001008 ! renal system property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png" xsd:anyURI property_value: has_relational_adjective "urothelial" xsd:string [Term] id: UBERON:0000366 name: flexor muscle def: "A skeletal muscle whose contraction bends a joint." [http://www.thefreedictionary.com/flexor+muscle, https://github.com/obophenotype/uberon/issues/57] subset: pheno_slim subset: vertebrate_core synonym: "flexor" RELATED [] xref: BTO:0001257 xref: FMA:74559 xref: FMA:74999 xref: TAO:0005271 xref: ZFA:0005271 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010977 ! flexor pre-muscle mass relationship: part_of UBERON:0000026 ! appendage property_value: external_definition "A muscle that decreases the angle of a joint.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005271", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0000368 name: adductor brevis def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [Wikipedia:Adductor_brevis_muscle] subset: human_reference_atlas synonym: "adductor brevis muscle" EXACT [] synonym: "musculus adductos brevis" EXACT [FMA:22442] xref: BTO:0001288 xref: EMAPA:36219 xref: FMA:22442 xref: SCTID:181687007 xref: Wikipedia:Adductor_brevis_muscle is_a: UBERON:0004252 ! hindlimb stylopod muscle is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI [Term] id: UBERON:0000369 name: corpus striatum alt_id: UBERON:0010082 def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum] comment: * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum subset: efo_slim synonym: "striate body" RELATED [BTO:0001311] synonym: "striated body" RELATED [BTO:0001311] xref: BAMS:CSTR xref: BTO:0001311 xref: CALOHA:TS-0183 xref: EFO:0000381 xref: EHDAA2:0000596 xref: EMAPA:17549 xref: EV:0100184 xref: FMA:77616 xref: GAID:667 xref: MESH:D003342 xref: NCIT:C12448 xref: neuronames:2339 xref: SCTID:279318005 xref: UMLS:C0010097 {source="ncithesaurus:Corpus_Striatum"} xref: VHOG:0001175 xref: Wikipedia:Corpus_striatum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002420 {source="MA"} ! basal ganglion property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray656.png" xsd:anyURI property_value: homology_notes "Thus, certain telencephalic characters - such as the presence of a pallium divided into lateral, dorsal, and medial formations and a subpallium divided into striatum and septum - appear to characterize all vertebrates. They are primitive characters and are homologous among all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001175", ontology="VHOG", source="DOI:10.1146/annurev.ne.04.030181.001505, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.487 Figure 14-10", source="http://bgee.unil.ch/"} property_value: terminology_notes "The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2]" xsd:string [Term] id: UBERON:0000370 name: adductor magnus def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, the adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP,generalized]." [Wikipedia:Adductor_magnus_muscle] subset: human_reference_atlas synonym: "adductor magnus muscle" EXACT [] synonym: "musculus adductor magnus" RELATED OMO:0003011 [Wikipedia:Adductor_magnus_muscle] xref: AAO:0010040 xref: BTO:0001312 xref: EMAPA:36221 xref: FMA:22443 xref: galen:AdductorMagnus xref: SCTID:181688002 xref: Wikipedia:Adductor_magnus_muscle is_a: UBERON:0004252 ! hindlimb stylopod muscle is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI property_value: external_definition "Origin by two heads that are separated by a ventral tendon of the M. semitendinosus. One head originates from the ventral border of the pubic portion of the pelvic rim. The other head originates from the ischiatic border of the pelvic rim. The ventral head fuses with accessory head from the M. semitendinosus and inserts along the ventro-medial border of the femur. The dorsal belly merges with the ventral and accessory heads and inserts along the medial surface of the femur.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010040", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "Definition generalized to accommodate AAO class - 'Origin by two heads that are separated by a ventral tendon of the M. semitendinosus. One head originates from the ventral border of the pubic portion of the pelvic rim. The other head originates from the ischiatic border of the pelvic rim. The ventral head fuses with accessory head from the M. semitendinosus and inserts along the ventro-medial border of the femur. The dorsal belly merges with the ventral and accessory heads and inserts along the medial surface of the femur.' [AAO:0010040]" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0000371 name: syncytiotrophoblast def: "Extraembryonic cells of trophoblastic shell surrounding embryo, outside the cytotrophoblast layer, involved with implantation of the blastocyst by eroding extracellular matrix surrounding maternal endometrial cells at site of implantation, also contribute to villi. (dark staining, multinucleated)." [http://embryology.med.unsw.edu.au/Notes/placenta5.htm, Wikipedia:Syncytiotrophoblast] synonym: "syncitiotrophoblast" RELATED [] synonym: "syncitiotrophoblastus" RELATED OMO:0003011 [Wikipedia:Syncytiotrophoblast] synonym: "syncytial trophoblast" EXACT [FMA:83040] synonym: "syntrophoblast" RELATED [] synonym: "syntrophoblast layer" EXACT [ISBN:0073040584] xref: BTO:0001335 xref: EHDAA:129 xref: EHDAA:91 xref: EMAPA:16068 xref: FMA:83040 xref: NCIT:C33918 xref: SCTID:256965005 xref: UMLS:C1135936 {source="ncithesaurus:Syncytiotrophoblast"} xref: Wikipedia:Syncytiotrophoblast is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: part_of UBERON:0004364 {source="EMAPA"} ! ectoplacental cone property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png" xsd:anyURI [Term] id: UBERON:0000372 name: extensor digitorum brevis pes def: "A muscle on the upper surface of the foot that helps extend digits 2 through 4." [Wikipedia:Extensor_digitorum_brevis_muscle] subset: human_reference_atlas synonym: "extensor digitorum brevis" EXACT [FMA:51140] synonym: "extensor digitorum brevis muscle" EXACT [] synonym: "musculus extensor digitorum brevis" RELATED OMO:0003011 [Wikipedia:Extensor_digitorum_brevis_muscle] xref: BTO:0001337 xref: EMAPA:36258 xref: FMA:51140 xref: Wikipedia:Extensor_digitorum_brevis_muscle is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0001498 ! muscle of pes relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray441.png" xsd:anyURI [Term] id: UBERON:0000373 name: tapetum of corpus callosum def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]." [Wikipedia:Tapetum_of_corpus_callosum] synonym: "tapetum" BROAD INCONSISTENT [FMA:77208] synonym: "tapetum corporis callosi" RELATED OMO:0003011 [Wikipedia:Tapetum_of_corpus_callosum] xref: DHBA:12027 xref: FMA:77208 xref: HBA:265504966 xref: neuronames:1596 xref: SCTID:279312006 xref: Wikipedia:Tapetum_of_corpus_callosum is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png" xsd:anyURI property_value: external_ontology_notes "not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0000375 name: mandibular nerve def: "The motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [MP:0009800, Wikipedia:Mandibular_nerve] subset: human_reference_atlas subset: pheno_slim synonym: "inferior maxillary nerve" EXACT [FMA:52996] synonym: "mandibular division [V3]" EXACT [FMA:52996] synonym: "mandibular division [Vc]" EXACT [FMA:52996] synonym: "mandibular division of fifth cranial nerve" EXACT [FMA:52996] synonym: "mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996] synonym: "mandibular nerve [V3]" EXACT [FMA:52996] synonym: "mandibular nerve [Vc]" EXACT [FMA:52996] synonym: "n. mandibularis" RELATED OMO:0003011 [Wikipedia:Mandibular_nerve] synonym: "nervus mandibularis" RELATED [BTO:0001375] synonym: "nervus mandibularis [v3]" EXACT OMO:0003011 [FMA:52996, FMA:TA] synonym: "nervus mandibularis [Vc; V3]" EXACT [FMA:52996] synonym: "nervus mandibularis [vc]" EXACT OMO:0003011 [FMA:52996, FMA:TA] synonym: "ramus mandibularis (ramus V3)" EXACT [AAO:0010688] synonym: "third division of fifth cranial nerve" EXACT [FMA:52996] synonym: "third division of trigeminal nerve" EXACT [FMA:52996] synonym: "trigeminal nerve mandibular division" RELATED [EMAPA:17798] synonym: "trigeminal V nerve mandibular division" EXACT [MA:0001101] xref: AAO:0010688 xref: AAO:0010703 xref: BTO:0001375 xref: EHDAA2:0002086 xref: EMAPA:17798 xref: FMA:52996 xref: GAID:834 xref: MA:0001101 xref: MESH:D008340 xref: NCIT:C32779 xref: SCTID:280212008 xref: UMLS:C0024695 {source="ncithesaurus:Inferior_Maxillary_Nerve"} xref: VHOG:0001345 xref: Wikipedia:Mandibular_nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png" xsd:anyURI [Term] id: UBERON:0000376 name: hindlimb stylopod def: "The part of the hindlimb between pelvis and the knee, corresponding to the femur." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim synonym: "femur" RELATED OMO:0003011 [Wikipedia:Thigh] synonym: "hind limb stylopod" EXACT [OBOL:automatic] synonym: "hind limb stylopodium" EXACT [VHOG:0000349] synonym: "hind propodium" EXACT [AAO:0000887] synonym: "hindlimb propodium" EXACT [AAO:0000887] synonym: "hindlimb stylopod" EXACT [OBOL:automatic] synonym: "hindlimb stylopodium" EXACT [OBOL:automatic] synonym: "proximal segment of free lower limb" EXACT [FMA:24967] synonym: "stylopod of hind limb" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "stylopod of lower limb" EXACT [] synonym: "thigh" EXACT [] synonym: "upper leg" EXACT HUMAN_PREFERRED [MA:0000052] xref: BTO:0001376 xref: CALOHA:TS-2039 xref: EFO:0001943 xref: EHDAA2:0002130 xref: EHDAA:5171 xref: EHDAA:6200 xref: EMAPA:17499 xref: FMA:24967 xref: GAID:50 xref: galen:Thigh xref: MA:0000052 xref: MESH:D013848 xref: NCIT:C33763 xref: SCTID:302544002 xref: UMLS:C0039866 {source="ncithesaurus:Thigh"} xref: VHOG:0000349 xref: Wikipedia:Thigh is_a: UBERON:0002472 ! stylopod is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0000978 {source="MA"} ! leg property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4b/Gray1238.png" xsd:anyURI property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000349", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} property_value: terminology_notes "Naming conventions for pod terms under discussion within phenoscape group." xsd:string {seeAlso="https://github.com/obophenotype/uberon/issues/61"} [Term] id: UBERON:0000377 name: maxillary nerve def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve] subset: human_reference_atlas subset: pheno_slim synonym: "maxillary division [V2]" EXACT [FMA:52724] synonym: "maxillary division [Vb]" EXACT [FMA:52724] synonym: "maxillary division of fifth cranial nerve" EXACT [FMA:52724] synonym: "maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724] synonym: "maxillary nerve [V2]" EXACT [FMA:52724] synonym: "maxillary nerve [Vb]" EXACT [FMA:52724] synonym: "n. maxillaris" RELATED OMO:0003011 [Wikipedia:Maxillary_nerve] synonym: "nervus maxillaris" RELATED [BTO:0001378] synonym: "nervus maxillaris (Vb; V2)" EXACT [FMA:52724] synonym: "nervus maxillaris [v2]" EXACT OMO:0003011 [FMA:52724, FMA:TA] synonym: "nervus maxillaris [vb]" EXACT OMO:0003011 [FMA:52724, FMA:TA] synonym: "ramus maxillaris (ramus V2)" EXACT [AAO:0010670] synonym: "second division of fifth cranial nerve" EXACT [FMA:52724] synonym: "second division of trigeminal nerve" EXACT [FMA:52724] synonym: "trigeminal nerve maxillary division" RELATED [EMAPA:17799] synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103] xref: AAO:0010670 xref: BTO:0001378 xref: EHDAA2:0002087 xref: EMAPA:17799 xref: FMA:52724 xref: GAID:836 xref: MA:0001103 xref: MESH:D008442 xref: SCTID:280211001 xref: VHOG:0001346 xref: Wikipedia:Maxillary_nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of trunk maxillary-mandibularis (AAO:0010669)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010670", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png" xsd:anyURI property_value: external_definition "Medial ramus (sensory) of the trigeminal nerve.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010670", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0000378 name: tongue muscle def: "The muscular portion of the tongue." [MP:0004136, Wikipedia:Muscles_of_tongue] subset: pheno_slim synonym: "muscle of tongue" EXACT [FMA:46689] synonym: "muscle organ of tongue" EXACT [OBOL:accepted] synonym: "musculi linguae" RELATED OMO:0003011 [Wikipedia:Muscles_of_tongue] synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic] synonym: "tongue skeletal muscle" EXACT [OBOL:automatic] synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic] xref: BTO:0001386 xref: EHDAA2:0002065 xref: EHDAA:9146 xref: EMAPA:17883 xref: FMA:46689 xref: MA:0001596 xref: NCIT:C49301 xref: NCIT:C52707 xref: SCTID:244781004 xref: UMLS:C0448325 {source="ncithesaurus:Tongue_Muscle"} xref: UMLS:C1710437 {source="ncithesaurus:Tongue_Skeletal_Muscle_Tissue"} xref: VHOG:0001390 xref: Wikipedia:Muscles_of_tongue is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0014892 {source="FEED:rd"} ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0005594 {source="FEED:rd", source="ISBN:1607950324"} ! head somite relationship: part_of UBERON:0000165 ! mouth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png" xsd:anyURI property_value: homology_notes "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001390", ontology="VHOG", source="DOI:10.1002/dvdy.20587 Kusakabe R, Kuratani S, Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000379 name: tracheal mucosa def: "A mucosa that is part of a respiratory airway." [OBOL:automatic] synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic] synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic] synonym: "mucosa of trachea" EXACT [OBOL:automatic] synonym: "mucosa of windpipe" EXACT [OBOL:automatic] synonym: "mucous membrane of trachea" EXACT [FMA:7471, OBOL:automatic] synonym: "mucous membrane of windpipe" EXACT [OBOL:automatic] synonym: "organ mucosa of trachea" EXACT [OBOL:automatic] synonym: "organ mucosa of windpipe" EXACT [OBOL:automatic] synonym: "trachea mucosa" EXACT [OBOL:automatic] synonym: "trachea mucosa of organ" EXACT [OBOL:automatic] synonym: "trachea mucous membrane" EXACT [OBOL:automatic] synonym: "trachea organ mucosa" EXACT [OBOL:automatic] synonym: "tracheal mucous membrane" EXACT [FMA:7471] synonym: "tunica mucosa (tracheae)" EXACT [FMA:7471] synonym: "tunica mucosa tracheae" EXACT OMO:0003011 [FMA:7471, FMA:TA] synonym: "windpipe mucosa" EXACT [OBOL:automatic] synonym: "windpipe mucosa of organ" EXACT [OBOL:automatic] synonym: "windpipe mucous membrane" EXACT [OBOL:automatic] synonym: "windpipe organ mucosa" EXACT [OBOL:automatic] xref: BTO:0001390 xref: FMA:7471 xref: SCTID:660006 is_a: UBERON:0004785 ! respiratory system mucosa relationship: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0000380 name: obsolete tuber xref: BTO:0001400 is_obsolete: true consider: EFO:0001015 consider: FMA:75430 [Term] id: UBERON:0000381 name: urinary bladder detrusor smooth muscle def: "Bundles of smooth muscle fibers forming the muscular wall of the urinary bladder, which are arranged in a longitudinal and a circular layer and, on contraction, serve to expel urine[MP]." [MP:0011774, Wikipedia:Detrusor_urinae_muscle] subset: human_reference_atlas subset: pheno_slim synonym: "detrusor" EXACT [FMA:68018] synonym: "detrusor muscle" EXACT [BTO:0001453] synonym: "detrusor muscle of bladder" EXACT [EMAPA:28637] synonym: "detrusor smooth muscle" EXACT [] synonym: "detrusor urinae muscle" EXACT [Wikipedia:Detrusor_urinae_muscle] synonym: "muscularis propria" BROAD [ncithesaurus:Muscularis_Propria, Wikipedia:Detrusor_urinae_muscle] synonym: "muscularis propria of the urinary bladder" EXACT [Wikipedia:Detrusor_urinae_muscle] synonym: "musculus detrusor vesicae" EXACT OMO:0003011 [FMA:68018, FMA:TA] synonym: "musculus detrusor vesicae urinariae" RELATED OMO:0003011 [Wikipedia:Detrusor_urinae_muscle] synonym: "urinary bladder detrusor muscle" EXACT [MA:0001698] synonym: "urinary bladder detrussor smooth muscle" EXACT [MA:0001698] xref: BTO:0001453 xref: EMAPA:28637 xref: FMA:68018 xref: MA:0001698 xref: NCIT:C62404 xref: SCTID:279414008 xref: Wikipedia:Detrusor_urinae_muscle is_a: UBERON:0004228 ! urinary bladder smooth muscle relationship: part_of UBERON:0012378 {source="FMA"} ! muscle layer of urinary bladder relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg" xsd:anyURI [Term] id: UBERON:0000382 name: apocrine sweat gland def: "Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]." [PMID:18489347, Wikipedia:Apocrine_sweat_gland] subset: organ_slim subset: pheno_slim synonym: "glandula sudorifera apocrina" EXACT OMO:0003011 [Wikipedia:Apocrine_sweat_gland] xref: BTO:0001458 xref: EMAPA:37426 {source="MA:th"} xref: FMA:59155 xref: MESH:D001050 xref: NCIT:C32132 xref: SCTID:399916008 xref: UMLS:C0930083 {source="ncithesaurus:Apocrine_Sweat_Gland"} xref: Wikipedia:Apocrine_sweat_gland is_a: UBERON:0001820 {source="FMA"} ! sweat gland is_a: UBERON:0012177 ! skin apocrine gland relationship: never_in_taxon NCBITaxon:9822 {source="http://www.nal.usda.gov/awic/pubs/swine/swine.htm"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2111" xsd:string property_value: taxon_notes "In humans, apocrine sweat glands are found only in certain locations of the body: the axillae (armpits), the areola of the nipples, and the genitoanal region." xsd:string [Term] id: UBERON:0000383 name: musculature of body def: "The subdivision of the musculoskeletal system that consists of all the muscles of the body[VSAO, modified]." [VSAO:0000033] subset: efo_slim subset: human_reference_atlas subset: pheno_slim synonym: "muscle system" EXACT [] synonym: "muscle system of body" EXACT [] synonym: "muscular system" EXACT [FMA:72954] synonym: "musculature system" EXACT [BILA:0000088] synonym: "muskelsystem" RELATED [BTO:0001485] synonym: "set of all muscles" EXACT [FMA:72954] synonym: "set of muscles of body" EXACT [FMA:72954] synonym: "vertebrate muscular system" EXACT [BTO:0001369] xref: AAO:0000307 xref: BILA:0000088 xref: BTO:0001369 xref: BTO:0001485 xref: EFO:0000801 xref: FMA:72954 xref: MA:0002888 xref: MAT:0000025 xref: MIAA:0000025 xref: VSAO:0000033 xref: XAO:0004042 is_a: UBERON:0011216 ! organ system subdivision relationship: never_in_taxon NCBITaxon:6040 relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "consider whether this should be restricted to skeletal musculature. See https://github.com/obophenotype/uberon/issues/77" xsd:string property_value: external_definition "Anatomical system that consists of the muscles of the body.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000033", ontology="VSAO", source="VSAO:curator"} property_value: external_ontology_notes "we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA" xsd:string {external_ontology="MA"} [Term] id: UBERON:0000385 name: obsolete labial gland comment: the label 'labial gland' refers to two distinct classes. From the BTO def: 1. One of the small tubular mucous and serous glands lying beneath the mucous membrane of the lips.n2. A salivary gland, or modification thereof, opening at the base of the labium in certain insects. synonym: "glandulae labiales" EXACT OMO:0003011 [FMA:71613, FMA:TA] synonym: "Labial glands" EXACT [FMA:71613] synonym: "Labial glands set" EXACT [FMA:71613] xref: BTO:0001548 is_obsolete: true consider: FMA:71613 consider: HAO:0000449 [Term] id: UBERON:0000387 name: meniscus def: "Crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)] synonym: "articular disc" EXACT [FMA:76690] xref: BTO:0001592 xref: EV:0100145 xref: FMA:76690 xref: galen:Meniscus xref: MESH:D000072600 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33096 xref: UMLS:C0224498 {source="ncithesaurus:Meniscus"} xref: Wikipedia:Meniscus_(anatomy) is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000982 ! skeletal joint [Term] id: UBERON:0000388 name: epiglottis def: "A part of the pharynx that consists of a flap of elastic cartilage tissue plus a mucous membrane covering, attached to the entrance of the larynx. The epiglottis is found at the root of the tongue and folds back over the entrance to the larynx during swallowing, preventing inhalation of food or drink[MP,modified]." [http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0010371, Wikipedia:Epiglottis] subset: pheno_slim xref: BTO:0001628 xref: EHDAA2:0004081 xref: EMAPA:18289 xref: FMA:55130 xref: GAID:111 xref: MESH:D004825 xref: NCIT:C12709 xref: SCTID:245502004 xref: UMLS:C0014540 {source="ncithesaurus:Epiglottis"} xref: Wikipedia:Epiglottis is_a: UBERON:0013522 ! subdivision of tube relationship: develops_from UBERON:0003115 {source="EHDAA2"} ! pharyngeal arch 4 relationship: never_in_taxon NCBITaxon:8782 relationship: part_of UBERON:0001051 ! hypopharynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray958.png" xsd:anyURI property_value: has_relational_adjective "epiglottal" xsd:string [Term] id: UBERON:0000389 name: lens cortex def: "Tissue that surrounds the lens nucleus." [http://www.thefreedictionary.com/lens+cortex] subset: human_reference_atlas synonym: "cortex of lens" EXACT [FMA:58970] xref: BTO:0001632 xref: CALOHA:TS-0542 xref: FMA:58970 xref: MESH:D007904 xref: SCTID:280626006 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0005614 ! lens anterior epithelium relationship: part_of UBERON:0000965 ! lens of camera-type eye relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000390 name: lens nucleus def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633] subset: human_reference_atlas synonym: "nucleus of lens" EXACT [FMA:58971] xref: BTO:0001633 xref: FMA:58971 xref: MESH:D007907 xref: SCTID:280628007 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: develops_from UBERON:0005614 ! lens anterior epithelium relationship: part_of UBERON:0000965 ! lens of camera-type eye relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000391 name: leptomeninx def: "Pia mater or arachnoid mater." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Leptomeninges] subset: organ_slim synonym: "arachnoid mater and pia mater" RELATED [FMA:231515] synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634] synonym: "leptomeninges" EXACT OMO:0003004 [NLXANAT:090207] synonym: "pia-arachnoid" RELATED [BTO:0001634] synonym: "pia-arachnoid of neuraxis" RELATED [FMA:231515] xref: BTO:0001634 xref: CALOHA:TS-0546 xref: FMA:231515 xref: NCIT:C32979 xref: neuronames:2347 xref: NLXANAT:090207 xref: SCTID:362303006 xref: UMLS:C0228126 {source="ncithesaurus:Leptomeninges"} xref: Wikipedia:Leptomeninges is_a: UBERON:0002360 ! meninx relationship: immediate_transformation_of UBERON:0007646 ! endomeninx property_value: editor_note "check relationship to secondary meninx" xsd:string property_value: external_ontology_notes "in FMA/NIF this is a superclass of PM/AM - in BTO it is the mereological sum. We go with superclass here, as we are naming the class in the singular" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000392 name: longissimus muscle def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus] synonym: "intermediate column of erector spinae" RELATED [] synonym: "longissimus" EXACT [FMA:77178] synonym: "musculus longissimus" EXACT OMO:0003011 [BTO:0001648, Wikipedia:Longissimus] xref: BTO:0001648 xref: EMAPA:37648 {source="MA:th"} xref: FMA:77178 xref: SCTID:244858006 xref: Wikipedia:Longissimus is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column relationship: part_of UBERON:0002462 {source="BTO"} ! erector spinae muscle group property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png" xsd:anyURI [Term] id: UBERON:0000395 name: cochlear ganglion def: "The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, MP:0002855] subset: pheno_slim synonym: "cochlear part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "Corti's ganglion" EXACT [FMA:53445] synonym: "ganglion cochlearis" RELATED [BTO:0001688] synonym: "ganglion of Corti" EXACT [FMA:53445] synonym: "ganglion spirale" RELATED OMO:0003011 [Wikipedia:Spiral_ganglion] synonym: "ganglion spirale cochleae" RELATED [BTO:0001688] synonym: "spiral ganglion" EXACT [FMA:53445] synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688] synonym: "vestibulocochlear ganglion cochlear component" RELATED [EMAPA:17572] synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085] xref: BAMS:GcVIII xref: BTO:0001688 xref: EHDAA2:0002198 xref: EMAPA:17572 xref: FMA:53445 xref: GAID:722 xref: MA:0001085 xref: MESH:D013136 xref: neuronames:1405 xref: SCTID:368955007 xref: VHOG:0001183 xref: Wikipedia:Spiral_ganglion is_a: UBERON:0001714 ! cranial ganglion relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion relationship: part_of UBERON:0016490 ! auditory system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png" xsd:anyURI property_value: editor_note "in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems" xsd:string [Term] id: UBERON:0000396 name: vallate papilla alt_id: UBERON:0002927 def: "Any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue." [MGI:smb, MP:0006258] subset: pheno_slim synonym: "circumvallate papilla" EXACT [MA:0001594] synonym: "circumvallate papilla of tongue" EXACT [FMA:54822] synonym: "circumvallate papillae" RELATED OMO:0003004 [] synonym: "papilla vallatae" EXACT OMO:0003004 [FMA:71449, FMA:TA] synonym: "vallate papilla of tongue" EXACT [] xref: BIRNLEX:4106_2 xref: BTO:0001705 xref: EMAPA:18271 xref: FMA:54822 xref: MA:0001594 xref: NCIT:C32322 xref: SCTID:69517000 xref: UMLS:C0226965 {source="BIRNLEX:4106_2"} xref: UMLS:C1182961 {source="BIRNLEX:4106_2", source="ncithesaurus:Circumvallate_Papilla"} xref: UMLS:C1267555 {source="BIRNLEX:4106_2"} xref: Wikipedia:Vallate_papilla is_a: UBERON:0014389 ! gustatory papilla of tongue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1015.png" xsd:anyURI property_value: external_definition "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongu[BTO:0001705, Wikipedia:Vallate_papilla]e" xsd:string {source="BTO:0001705, Wikipedia:Vallate_papilla"} [Term] id: UBERON:0000397 name: colonic epithelium def: "An epithelium that is part of a colon [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas subset: vertebrate_core synonym: "colon epithelial tissue" EXACT [OBOL:automatic] synonym: "colon epithelium" EXACT [FMA:17302, OBOL:automatic] synonym: "epithelial tissue of colon" EXACT [OBOL:automatic] synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic] synonym: "epithelium of colon" EXACT [OBOL:automatic] synonym: "epithelium of large bowel" EXACT [OBOL:automatic] synonym: "large bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "large bowel epithelium" EXACT [OBOL:automatic] synonym: "posterior intestine epithelium" EXACT [ZFA:0005128] xref: BTO:0001709 xref: CALOHA:TS-0163 xref: EMAPA:18941 xref: FMA:17302 xref: MA:0003195 xref: SCTID:42978003 xref: TAO:0005128 xref: ZFA:0005128 is_a: UBERON:0001278 ! epithelium of large intestine relationship: part_of UBERON:0001155 ! colon relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Intestinal epithelium which lines the lumen of the posterior intestine.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005128", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0000398 name: cartilage tissue of sternum def: "Any portion of cartilage tissue that is part of the sternum." [https://orcid.org/0000-0002-6601-2165] comment: Examples: cartilage of manubrium, cartilage of xiphoid process synonym: "cartilage of sternum" EXACT [FMA:32567] xref: FMA:32567 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003837 ! thoracic segment connective tissue relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0000399 name: jejunal mucosa def: "A mucosa that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "jejunal mucous membrane" EXACT [FMA:14949] synonym: "jejunum mucosa" EXACT [FMA:14949] synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic] synonym: "jejunum mucous membrane" EXACT [OBOL:automatic] synonym: "jejunum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of jejunum" EXACT [FMA:14949] synonym: "mucosa of organ of jejunum" EXACT [OBOL:automatic] synonym: "mucous membrane of jejunum" EXACT [OBOL:automatic] synonym: "organ mucosa of jejunum" EXACT [OBOL:automatic] xref: BTO:0001742 xref: CALOHA:TS-0495 xref: EMAPA:27109 xref: FMA:14949 xref: MA:0003214 xref: SCTID:362151009 is_a: UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0002115 ! jejunum relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000400 name: jejunal epithelium def: "An epithelium that is part of a jejunum." [OBOL:automatic] subset: human_reference_atlas synonym: "epithelium of jejunum" EXACT [] xref: BTO:0001743 xref: CALOHA:TS-0494 xref: EMAPA:18668 xref: FMA:17232 xref: MA:0003215 xref: SCTID:57300004 is_a: UBERON:0013636 ! epithelium of intestinal villus relationship: part_of UBERON:0008343 {source="FMA"} ! intestinal villus of jejunum relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000401 name: mandibular ramus def: "The upturned perpendicular extremity of the mandible." [ISBN:0-683-40008-8, MP:0010150] subset: pheno_slim synonym: "lower ramus" RELATED [Wikipedia:Ramus_of_the_mandible] synonym: "mandible ramus" EXACT [MA:0002815] synonym: "rami mandibulae" RELATED OMO:0003004 [Wikipedia:Ramus_of_the_mandible] synonym: "ramus mandibulae" RELATED OMO:0003004 [Wikipedia:Ramus_of_the_mandible] synonym: "ramus of mandible" EXACT [FMA:52828] xref: BTO:0001751 xref: EMAPA:25100 xref: FMA:52828 xref: MA:0002815 xref: SCTID:361739000 xref: Wikipedia:Ramus_of_the_mandible is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001684 ! mandible property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png" xsd:anyURI [Term] id: UBERON:0000402 name: nasal vestibule def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule] synonym: "vestibular part of nasal cavity" EXACT [FMA:59644] synonym: "vestibulum nasale" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED OMO:0003011 [BTO:0001761, Wikipedia:Nasal_vestibule] xref: BTO:0001761 xref: CALOHA:TS-0660 xref: FMA:59644 xref: SCTID:278940000 xref: Wikipedia:Nasal_vestibule is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001707 ! nasal cavity property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png" xsd:anyURI [Term] id: UBERON:0000403 name: scalp def: "The outer covering of the calvaria. It is composed of several layers: SKIN; subcutaneous connective tissue; the occipitofrontal muscle which includes the tendonous galea aponeurotica; Loose connective tissue; and the pericranium (the PERIOSTEUM of the SKULL)." [MESH:A01.456.810] subset: pheno_slim synonym: "scalpus" RELATED OMO:0003011 [Wikipedia:Scalp] xref: BTO:0001809 xref: CALOHA:TS-0896 xref: EMAPA:37949 {source="MA:th"} xref: FMA:46494 xref: GAID:80 xref: galen:Scalp xref: MESH:D012535 xref: NCIT:C89807 xref: SCTID:181480002 xref: UMLS:C0036270 {source="ncithesaurus:Scalp"} xref: Wikipedia:Scalp is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0000033 {source="BTO"} ! head property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Layers_of_the_scalp_and_meninges.png" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/eb/Double_cowlick.jpg" xsd:anyURI [Term] id: UBERON:0000407 name: sympathetic trunk def: "One of a a paired bundle of nerve fibers plus ganglia that run from the base of the skull to the coccyx." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Sympathetic_trunk] synonym: "gangliated cord" EXACT [Wikipedia:Sympathetic_trunk] synonym: "sympathetic chain" EXACT [FMA:6258] synonym: "sympathetic ganglionic chain" EXACT [Wikipedia:Sympathetic_trunk] synonym: "truncus sympathicus" RELATED OMO:0003011 [Wikipedia:Sympathetic_trunk] xref: AAO:0010791 xref: BAMS:S xref: BTO:0001834 xref: CALOHA:TS-2049 xref: EV:0100374 xref: FMA:6258 xref: SCTID:181099004 xref: Wikipedia:Sympathetic_trunk xref: XAO:0000211 is_a: UBERON:0000062 ! organ is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0000013 ! sympathetic nervous system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png" xsd:anyURI [Term] id: UBERON:0000408 name: vertebral ganglion def: "Any of a group of sympathetic ganglia which form two chains extending from the base of the skull to the coccyx along the sides of the spinal column." [BTO:0001835] synonym: "intermediate ganglion" EXACT [FMA:6572] xref: BTO:0001835 xref: FMA:6572 xref: SCTID:176596009 is_a: UBERON:0001807 ! paravertebral ganglion relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0000409 name: serous gland def: "A gland in which the principal secretory cells are serous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] subset: organ_slim subset: pheno_slim xref: BTO:0001837 xref: EMAPA:37950 {source="MA:th"} xref: FMA:62889 xref: Wikipedia:Serous_gland is_a: UBERON:0002365 ! exocrine gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png" xsd:anyURI property_value: external_definition "glands that secrete watery albuminous material that often contains enzymes[MP:0008052]." xsd:string {source="MP:0008052"} [Term] id: UBERON:0000410 name: bronchial mucosa def: "A mucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi mucosa" EXACT [OBOL:automatic] synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchi mucous membrane" EXACT [OBOL:automatic] synonym: "bronchi organ mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchial trunk mucous membrane" EXACT [OBOL:automatic] synonym: "bronchial trunk organ mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchus" EXACT [FMA:62652, OBOL:automatic] synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic] synonym: "tunica mucosa bronchi" EXACT OMO:0003011 [FMA:62652, FMA:TA] xref: BTO:0001846 xref: FMA:62652 xref: SCTID:30802009 is_a: UBERON:0000379 ! tracheal mucosa relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0000411 name: visual cortex def: "The part of the occipital lobe responsible for processing visual information." [Wikipedia:Visual_cortex] comment: The visual cortex is made up of Brodmann area 17 (the primary visual cortex), and Brodmann area 18 and Brodmann area 19, the extrastriate cortical areas, in humans. subset: efo_slim synonym: "higher-order visual cortex" RELATED [FMA:242644] synonym: "visual areas" RELATED [BAMS:VIS] xref: BAMS:VIS xref: BTO:0001857 xref: CALOHA:TS-1117 xref: EFO:0000916 xref: EMAPA:36446 xref: EV:0100171 xref: FMA:242644 xref: GAID:679 xref: MBA:669 xref: MESH:D014793 xref: neuronames:1911 xref: Wikipedia:Visual_cortex is_a: UBERON:8440011 ! cortical visual area relationship: part_of UBERON:0002021 ! occipital lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png" xsd:anyURI [Term] id: UBERON:0000412 name: dermal papilla def: "A mesodermal signaling center of the hair follicle consisting of closely packed specialized mesenchymal fibroblasts. Framed by the enlarged bulb matrix in anagen." [DOI:10.1016/j.cub.2008.12.005] subset: human_reference_atlas subset: pheno_slim synonym: "dermal papilla cell" RELATED [BTO:0001858] synonym: "dermal papillae" EXACT OMO:0003004 [] synonym: "follicular papilla" EXACT [FMA:70737] synonym: "hair follicle dermal papilla" RELATED [MP:0010687] synonym: "hair papilla" RELATED [] synonym: "papilla corii" RELATED [BTO:0001858] synonym: "papilla dermatis" RELATED [BTO:0001858] synonym: "papilla dermis" RELATED [BTO:0001858] synonym: "papilla of corium" RELATED [BTO:0001858] synonym: "papillae dermis" RELATED OMO:0003011 [Wikipedia:Dermal_papillae] synonym: "skin papilla" RELATED [BTO:0001858] xref: BTO:0001858 xref: CALOHA:TS-0431 xref: EMAPA:36484 xref: FMA:70737 xref: NCIT:C32710 xref: NCIT:C83189 xref: SCTID:320101005 xref: UMLS:C0221931 {source="ncithesaurus:Dermal_Papilla"} xref: Wikipedia:Dermal_papillae is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001992 ! papillary layer of dermis relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/34/Skin.jpg" xsd:anyURI property_value: editor_note "consider adding grouping class for TAO:0001995 ! papilla" xsd:string property_value: external_ontology_notes "ncit has 'hair papilla' as part of hypodermis" xsd:string {external_ontology="ncit"} property_value: function_notes "Blood vessels in the dermal papillae nourish all hair follicles and bring nutrients and oxygen to the lower layers of epidermal cells." xsd:string property_value: taxon_notes "In humans, at the surface of the skin in hands and feet, they appear as epidermal or papillary ridges (colloquially known as fingerprints)" xsd:string [Term] id: UBERON:0000414 name: mucous gland def: "A gland in which the principal secretory cells are mucus secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] subset: organ_slim synonym: "glandula mucosa" EXACT OMO:0003011 [Wikipedia:Mucous_gland] synonym: "muciparous gland" RELATED [BTO:0001979] synonym: "mucous secreting gland" RELATED [] synonym: "mucus gland" RELATED [] synonym: "mucus-secreting gland" RELATED [] xref: AAO:0010601 xref: BTO:0001979 xref: EMAPA:37913 {source="MA:th"} xref: FMA:62888 xref: Wikipedia:Mucous_gland is_a: UBERON:0002365 ! exocrine gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png" xsd:anyURI property_value: taxon_notes "In frogs and salamanders, this is the smaller of the two types of gland, the other being the granular (poison) gland. In these species the mucous gland is a cluster of cells that release secretion into a common duct[Kardong]" xsd:string {scope="NCBITaxon:8292", source="ISBN:0073040584"} [Term] id: UBERON:0000415 name: artery wall def: "An anatomical wall that is part of an artery [Automatically generated definition]." [OBOL:automatic] synonym: "arterial wall" EXACT [FMA:14155] synonym: "wall of artery" EXACT [FMA:14155] xref: BTO:0002009 xref: FMA:14155 xref: galen:ArterialWall is_a: UBERON:0035965 ! wall of blood vessel relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0000416 name: subdural space def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, PMID:8421539, Wikipedia:Subdural_space] synonym: "cavum subdurale" RELATED OMO:0003011 [BTO:0002082, Wikipedia:Subdural_space] synonym: "spatium subdurale" RELATED OMO:0003011 [BTO:0002082, Wikipedia:Subdural_space] synonym: "subdural cavity" RELATED [BTO:0002082] synonym: "subdural cleavage" RELATED [BTO:0002082] synonym: "subdural cleft" RELATED [BTO:0002082] xref: BTO:0002082 xref: FMA:83803 xref: GAID:692 xref: MESH:D013355 xref: SCTID:362308002 xref: Wikipedia:Subdural_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0010743 ! meningeal cluster property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg" xsd:anyURI property_value: editor_note "consider obsoleting - see PMID:8421539" xsd:string [Term] id: UBERON:0000418 name: obsolete tubercle is_obsolete: true [Term] id: UBERON:0000420 name: myoepithelium def: "An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]." [CL:0000185, Wikipedia:Myoepithelial_cell] synonym: "myo-epithelium" EXACT [FMA:67805] synonym: "myoepitheliocytus" RELATED OMO:0003011 [Wikipedia:Myoepithelial_cell] xref: BTO:0002308 xref: FMA:67805 xref: Wikipedia:Myoepithelial_cell is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0000423 name: eccrine sweat gland def: "A merocrine, unbranched, unbranched, coiled, tubular gland sweat gland. In humans, distributed over almost all of the body surface, and promote cooling by evaporation of their secretion." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Eccrine_sweat_gland] subset: human_reference_atlas subset: organ_slim subset: pheno_slim synonym: "eccrine gland" RELATED [FMA:59154] synonym: "glandula sudorifera eccrina" EXACT OMO:0003011 [Wikipedia:Eccrine_sweat_gland] synonym: "glandula sudorifera merocrina" EXACT OMO:0003011 [Wikipedia:Eccrine_sweat_gland] synonym: "merocrine sweat gland" RELATED [] xref: BTO:0002323 xref: FMA:59154 xref: GAID:945 xref: MA:0003039 xref: MESH:D004439 xref: NCIT:C32490 xref: SCTID:361699008 xref: UMLS:C0013492 {source="ncithesaurus:Eccrine_Sweat_Gland"} xref: Wikipedia:Eccrine_sweat_gland is_a: UBERON:0001820 ! sweat gland is_a: UBERON:0010243 {source="MGI:anna"} ! merocrine gland relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "in mice, found only on footpads; in humans, entire body including soles and palms" xsd:string [Term] id: UBERON:0000424 name: gastric pit alt_id: UBERON:0000425 def: "Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits." [Wikipedia:Gastric_pits] synonym: "foveola gastrica" RELATED [BTO:0002364] synonym: "foveolae gastricae" EXACT OMO:0003004 [FMA:76583, FMA:TA] synonym: "foveolae gastricae" RELATED OMO:0003011 [Wikipedia:Gastric_pits] synonym: "gastric foveola" EXACT [FMA:62947] xref: BTO:0002364 xref: FMA:62947 xref: NCIT:C32659 xref: SCTID:268426007 xref: UMLS:C0227203 {source="ncithesaurus:Gastric_Pit"} xref: Wikipedia:Gastric_pits is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001199 {source="BTO"} ! mucosa of stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/73/Illu_stomach_layers.jpg" xsd:anyURI [Term] id: UBERON:0000426 name: extravillous trophoblast def: "The outermost layer of trophoblast, produced by cytotrophoblast where there is direct contact with maternal decidua rather than blood. The EVT cells travel into the decidua, reacting with NK cells and invading maternal blood vessels feeding the placenta, softening the walls and replacing the lining with fetal tissue, a process called conversion." [BTO:0002366] synonym: "intermediate trophoblast" EXACT [FMA:86561] synonym: "interstitial trophoblast" RELATED [BTO:0002366] xref: BTO:0002366 xref: FMA:86561 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast [Term] id: UBERON:0000427 name: obsolete cytotrophoblastic cell is_obsolete: true consider: NCIT:C38575 [Term] id: UBERON:0000428 name: prostate epithelium alt_id: UBERON:0002452 def: "The prostate epithelium." [MP:0001168] subset: human_reference_atlas subset: pheno_slim synonym: "epithelial tissue of prostate" EXACT [OBOL:automatic] synonym: "epithelial tissue of prostate gland" EXACT [OBOL:automatic] synonym: "epithelium of prostate" EXACT [OBOL:automatic] synonym: "epithelium of prostate gland" EXACT [OBOL:automatic] synonym: "epithelium of prostatic gland" EXACT [FMA:79643] synonym: "prostate epithelial tissue" EXACT [OBOL:automatic] synonym: "prostate gland epithelial tissue" EXACT [OBOL:automatic] synonym: "prostate gland epithelium" EXACT [] synonym: "prostatic epithelium" EXACT [FMA:66812] synonym: "prostatic gland epithelium" EXACT [] xref: BTO:0002397 xref: CALOHA:TS-2065 xref: EMAPA:35711 xref: FMA:66812 xref: FMA:79643 xref: MA:0001737 xref: NCIT:C13103 xref: UMLS:C1179826 {source="ncithesaurus:Prostatic_Epithelium"} is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "TODO - check 2 FMA IDs" xsd:string [Term] id: UBERON:0000429 name: enteric plexus alt_id: UBERON:0012372 def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437] subset: human_reference_atlas synonym: "enteric nerve plexus" EXACT [FMA:77597] synonym: "intrinsic nerve plexus" EXACT [MA:0001147] synonym: "plexus entericus" EXACT [BTO:0002437] synonym: "plexus nervosus entericus" EXACT OMO:0003011 [FMA:77597, FMA:TA] synonym: "sympathetic enteric nerve plexus" EXACT [FMA:77597] xref: BTO:0002437 xref: EMAPA:35446 xref: FMA:77597 xref: MA:0001147 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0002005 ! enteric nervous system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000430 name: ventral intermediate nucleus of thalamus def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469] subset: vertebrate_core synonym: "intermediate thalamic nuclei" RELATED OMO:0003004 [ZFA:0000370] synonym: "intermediate thalamic nucleus" RELATED [TAO:0000370] synonym: "nucleus ventralis intermedius thalami" RELATED [BTO:0002469] xref: BTO:0002469 xref: EV:0100208 xref: FMA:84347 xref: TAO:0000370 xref: ZFA:0000370 is_a: UBERON:0015234 ! nucleus of ventral thalamus [Term] id: UBERON:0000431 name: ventral medial complex of thalamus def: "A group of nuclei located in the medial portion of the ventral thalamic nuclei." [BTO:0002470] synonym: "nuclei ventrales mediales thalami" RELATED OMO:0003011 [BTO:0002470] synonym: "set of ventral medial nuclei of thalamus" RELATED [FMA:77795] synonym: "ventral medial complex of thalamus" EXACT [FMA:77795] synonym: "ventral medial nuclei of thalamus" EXACT [FMA:77795] xref: BTO:0002470 xref: FMA:77795 is_a: UBERON:0010009 {source="FMA"} ! aggregate regional part of brain relationship: part_of UBERON:0002776 {source="BTO-modified"} ! ventral nuclear group [Term] id: UBERON:0000432 name: endopeduncular nucleus def: "A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human." [MESH:A08.186.211.730.385.800.240] comment: The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN] synonym: "entopeduncular nucleus" RELATED [] synonym: "nucleus endopeduncularis" RELATED [BTO:0002475] synonym: "nucleus entopeduncularis" RELATED [] xref: BAMS:EN xref: BTO:0002475 xref: DHBA:13057 xref: FMA:77691 xref: MESH:D020392 xref: neuronames:2284 xref: SCTID:82705008 is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0009641 {source="NN"} ! ansa lenticularis [Term] id: UBERON:0000433 name: posterior paraventricular nucleus of thalamus def: "The posterior of the two nuclei paraventriculares thalami." [BTO:0002456] synonym: "caecal epithelium" RELATED [BTO:0002477] synonym: "dorsal paraventricular nucleus of thalamus" EXACT [FMA:76961] synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002456, BTO:0002477] synonym: "posterior paraventricular nuclei" RELATED [BTO:0002456] synonym: "posterior paraventricular nucleus of thalamus" RELATED [BTO:0002456] synonym: "posterior paraventricular nucleus of the thalamus" RELATED [BAMS:PARP] xref: BAMS:PARP xref: BTO:0002456 xref: FMA:76961 xref: HBA:4536 is_a: UBERON:0001920 ! paraventricular nucleus of thalamus [Term] id: UBERON:0000434 name: anterior paraventricular nucleus of thalamus def: "The anterior of the two nuclei paraventriculares thalami." [BTO:0002455, Dorlands_Medical_Dictionary:MerckSource] synonym: "anterior paraventricular nuclei" RELATED [BTO:0002455] synonym: "anterior paraventricular nucleus" EXACT [BTO:0002455] synonym: "anterior paraventricular nucleus of thalamus" RELATED [BTO:0002455] synonym: "anterior paraventricular nucleus of the thalamus" RELATED [BAMS:PARA] synonym: "anterior periventricular nucleus of the hypothalamus" RELATED [BAMS:PVa] synonym: "nucleus paraventricularis anterior thalami" RELATED [BTO:0002455, BTO:0002478] synonym: "periventricular hypothalamic nucleus, anterior part" RELATED [BAMS:PVa] synonym: "ventral paraventricular nucleus of thalamus" EXACT [FMA:76962] xref: BAMS:PARA xref: BAMS:PVa xref: BTO:0002455 xref: DMBA:16400 xref: FMA:76962 xref: HBA:12906 xref: MBA:30 xref: neuronames:2928 is_a: UBERON:0001920 ! paraventricular nucleus of thalamus [Term] id: UBERON:0000435 name: lateral tuberal nucleus def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481] comment: The lateral tuberal nucleus is specific to humans and higher primates, however, this term is sometimes used loosely. If using for rodents, please use tuberal nucleus (sensu Rodentia) instead. If refering to the nucleus lateralis tuberis of fish, please use nucleus lateralis tuberis system (sensu Teleostei) {xref="PMID:29976824", xref="PMID:29976812", xref="DOI:10.1016/0016-6480(71)90165-1", xref="PMID:1362279"} subset: human_reference_atlas synonym: "lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [BIRNLEX:1206] synonym: "lateral tuberal nuclei" EXACT [FMA:62336] synonym: "LTu" BROAD OMO:0003000 [BIRNLEX:1206, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei tuberales laterales" RELATED [BTO:0002481] synonym: "nucleus tuberis" RELATED OMO:0003011 [NeuroNames:428] synonym: "nucleus tuberis hypothalami" RELATED OMO:0003011 [NeuroNames:428] synonym: "nucleus tuberis lateralis" RELATED OMO:0003011 [NeuroNames:428] xref: BAMS:LTu xref: BIRNLEX:1206 xref: BM:TU xref: BTO:0002481 xref: DHBA:10493 xref: EV:0100240 xref: FMA:62336 xref: HBA:12915 xref: neuronames:428 {source="BIRNLEX:1206"} xref: UMLS:C0086527 {source="BIRNLEX:1206"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000437 name: arachnoid barrier layer def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498] xref: BTO:0002498 xref: FMA:231559 is_a: UBERON:0004923 {source="FMA"} ! organ component layer relationship: part_of UBERON:0000201 {source="cjm"} ! endothelial blood brain barrier relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater [Term] id: UBERON:0000438 name: obsolete set of arachnoid trabecula synonym: "Arachnoid trabeculae set" EXACT [FMA:77761] synonym: "trabeculae arachnoideae" EXACT OMO:0003011 [FMA:77761, FMA:TA] is_obsolete: true consider: FMA:77761 [Term] id: UBERON:0000439 name: arachnoid trabecula def: "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges." [Wikipedia:Arachnoid_trabeculae] synonym: "arachnoid trabeculae" RELATED OMO:0003004 [] synonym: "trabecula arachnoideum" RELATED OMO:0003011 [] xref: BTO:0002500 xref: FMA:83979 xref: Wikipedia:Arachnoid_trabeculae is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000440 name: trabecula def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, Wikipedia:Trabecula] subset: grouping_class subset: pheno_slim synonym: "trabeculae" EXACT OMO:0003004 [] xref: BTO:0002501 xref: FMA:85273 xref: Wikipedia:Trabecula is_a: UBERON:0000064 ! organ part property_value: has_relational_adjective "trabecular" xsd:string [Term] id: UBERON:0000442 name: right testicular vein def: "A vein that drains the left pampiniform plexus and empties into the left renal vein." [Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas synonym: "right spermatic vein" EXACT [MA:0002220] synonym: "vena testicularis (adrenalis) dextra" EXACT [FMA:14341] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002679 xref: EMAPA:37383 {source="MA:th"} xref: FMA:14341 xref: MA:0002220 xref: NCIT:C52697 xref: SCTID:53500001 is_a: UBERON:0001144 ! testicular vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000443 name: left testicular vein def: "A vein that drains the right pampiniform plexus and empties into the inferior vena cava." [Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas synonym: "left spermatic vein" EXACT [MA:0002219] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002680 xref: EMAPA:37167 {source="MA:th"} xref: FMA:14345 xref: MA:0002219 xref: NCIT:C52696 xref: SCTID:90988008 is_a: UBERON:0001144 ! testicular vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000444 name: lymphoid follicle synonym: "folliculus lymphaticus" RELATED [BTO:0002684] synonym: "lymphatic follicle" RELATED [BTO:0002684] synonym: "lymphatic nodule" RELATED [BTO:0002684] synonym: "lymphoid nodule" RELATED [FMA:55222] synonym: "nodular lymphoid tissue" EXACT [FMA:55222] synonym: "nodulus lymphaticus" RELATED [BTO:0002684] synonym: "nodulus lymphoideus" RELATED [BTO:0002684] xref: BTO:0002684 xref: FMA:55222 xref: NCIT:C33040 xref: SCTID:64626006 xref: UMLS:C0229654 {source="ncithesaurus:Lymphoid_Follicle"} is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue property_value: editor_note "introducing part_of to 'cortex of lymph node' as in issue 7 introduces equivalencies; the part_of has instead been added to 'lymph node follicle'" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/6" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/7" xsd:anyURI [Term] id: UBERON:0000445 name: habenular trigone def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [Wikipedia:Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies synonym: "trigone of habenulae" RELATED [BTO:0002700] synonym: "trigonum habenulae" RELATED OMO:0003011 [BTO:0002700, Wikipedia:Habenular_trigone] xref: BAMS:hbt xref: BTO:0002700 xref: FMA:74868 xref: neuronames:293 xref: Wikipedia:Habenular_trigone is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0000446 name: septum of telencephalon def: "Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996)." [BIRNLEX:963] subset: pheno_slim synonym: "area septalis" EXACT OMO:0003011 [FMA:61842, FMA:TA] synonym: "massa praecommissuralis" RELATED OMO:0003011 [NeuroNames:255] synonym: "Se" BROAD OMO:0003000 [PMID:23375746] synonym: "septal area" EXACT [FMA:61842] synonym: "septal region" RELATED [BAMS:SEP] synonym: "septum" BROAD [BIRNLEX:963] synonym: "septum (NN)" EXACT [FMA:61842] synonym: "septum pellucidum (BNA,PNA)" RELATED OMO:0003011 [NeuroNames:255] synonym: "septum telencephali" RELATED OMO:0003011 [NeuroNames:255] synonym: "telencephalon septum" EXACT [FMA:61842] xref: BAMS:SA xref: BAMS:SEP xref: BAMS:Sep xref: BAMS:Spt xref: BIRNLEX:963 xref: BM:Tel-Spt xref: BTO:0002705 xref: EMAPA:32837 xref: FMA:61842 xref: MA:0000924 xref: neuronames:255 {source="BIRNLEX:963"} xref: UMLS:C0752060 {source="BIRNLEX:963"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter property_value: external_definition "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA][FMA:61842]." xsd:string {source="FMA:61842"} [Term] id: UBERON:0000449 name: obsolete decidual cell xref: Wikipedia:Decidual_cells is_obsolete: true replaced_by: CL:2000002 consider: BTO:0002770 consider: FMA:86480 consider: NCIT:C32429 consider: UMLS:C1511740 {source="ncithesaurus:Decidual_Cell"} [Term] id: UBERON:0000450 name: corpus albicans def: "White fibrous tissue that replaces the regressing corpus luteum in the human ovary in the latter half of pregnancy, or soon after ovulation when pregnancy does not supervene." [BTO:0002784] subset: human_reference_atlas synonym: "corpus albicans of ovary" EXACT [FMA:18620] synonym: "corpus fibrosum" RELATED [BTO:0002784] synonym: "corpus mamillare" RELATED [BTO:0002784] synonym: "mamillary body" RELATED INCONSISTENT [BTO:0002784] synonym: "mammillary body" RELATED INCONSISTENT [BTO:0002784] xref: BTO:0002784 xref: EMAPA:29888 xref: FMA:18620 xref: SCTID:258043001 is_a: UBERON:0003982 {source="BTO"} ! mature ovarian follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000451 name: prefrontal cortex def: "The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia." [NLXANAT:090801] subset: efo_slim synonym: "frontal association cortex" RELATED PENDING_REVIEW [MA:0000906] synonym: "prefrontal association complex" RELATED [BTO:0002807] synonym: "prefrontal association cortex" EXACT [FMA:224850] xref: BAMS:FrA xref: BTO:0002807 xref: DHBA:10172 xref: EFO:0001384 xref: EMAPA:35356 xref: FMA:224850 xref: GAID:676 xref: MA:0000906 xref: MESH:D017397 xref: neuronames:1072 xref: NLXANAT:090801 xref: Wikipedia:Prefrontal_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001870 ! frontal cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/59/Gray726-Brodman-prefrontal.svg" xsd:anyURI property_value: editor_note "TODO - check MA" xsd:string [Term] id: UBERON:0000453 name: decidua basalis def: "Area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MP:0012529] subset: efo_slim subset: pheno_slim synonym: "basal decidua" RELATED [MGI:anna] synonym: "decidua serotina" RELATED [BTO:0002819] xref: BTO:0002819 xref: EFO:0001918 xref: EMAPA:35270 xref: FMA:86477 xref: MA:0002905 xref: NCIT:C32426 xref: SCTID:362841006 xref: UMLS:C0230965 {source="ncithesaurus:Decidua_Basalis"} is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0002450 ! decidua property_value: development_notes "As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity" xsd:string [Term] id: UBERON:0000454 name: cerebral subcortex def: "The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain." [ncithesaurus:Cerebral_Subcortex] subset: pheno_slim synonym: "cerebral medulla" EXACT [FMA:242188] synonym: "subcortex" RELATED [BTO:0002858] xref: BTO:0002858 xref: FMA:242188 xref: NCIT:C98712 xref: UMLS:C0815008 {source="ncithesaurus:Cerebral_Subcortex"} is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0000456 name: secretion of exocrine gland alt_id: UBERON:0006540 def: "A portion of organism substance that is produced by exocrine glands." [http://orcid.org/0000-0002-6601-2165] synonym: "bodily secretion" EXACT [MESH:D012634] synonym: "exocrine gland fluid" RELATED [] synonym: "exocrine gland fluid or secretion" RELATED [] synonym: "exocrine gland fluid/secretion" EXACT [MA:0002504] synonym: "exocrine gland secretion" RELATED [] synonym: "external secretion" RELATED [BTO:0002977] synonym: "secreted substance" EXACT [] synonym: "secretion" BROAD [FMA:9675] xref: AEO:0001005 xref: BTO:0002977 xref: BTO:0002979 xref: EMAPA:36535 xref: FMA:9675 xref: galen:Secretion xref: MA:0002504 xref: MESH:D012634 xref: NCIT:C34062 xref: UMLS:C1516992 {source="ncithesaurus:Exocrine_Gland_Fluid_or_Secretion"} is_a: UBERON:0000463 ! organism substance property_value: external_ontology_notes "BTO has two distunct classes, with exocrine glandular secretion a subtype of secretion - however, all examples in BTO directly under secretion appear to be exocrine gland secretions" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0000457 name: cavernous artery def: "Any of several small branches of the internal carotid artery that supply the trigeminal ganglion and the walls of the cavernous and petrosal sinuses." [BTO:0002996] synonym: "cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527] synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT OMO:0003011 [FMA:70527, FMA:TA] xref: BTO:0002996 xref: FMA:70527 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0000458 name: endocervix def: "The region of the opening of the uterine cervix into the uterine cavity." [BTO:0003002] subset: human_reference_atlas xref: BTO:0003002 xref: FMA:86485 xref: NCIT:C12309 xref: SCTID:264460007 xref: UMLS:C0227837 {source="ncithesaurus:Endocervix"} is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0000459 name: uterine wall def: "An anatomical wall that is part of a uterus [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical wall of uterus" EXACT [OBOL:automatic] synonym: "uterus anatomical wall" EXACT [OBOL:automatic] synonym: "uterus wall" EXACT [OBOL:automatic] synonym: "wall of uterus" EXACT [OBOL:automatic] xref: BTO:0003083 xref: FMA:17560 xref: SCTID:245485002 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0000460 name: major vestibular gland def: "The paired glands located slightly posterior and to the left and right of the opening of the vagina in the superficial perineal pouch in females; they secrete mucus to lubricate the vagina and are homologous to bulbourethral (Cowper's) glands in males." [MGI:anna, MP:0011787] subset: organ_slim subset: pheno_slim synonym: "Bartholin gland" EXACT [] synonym: "Bartholin's gland" EXACT [FMA:9598] synonym: "Duverney's gland" RELATED [FMA:9598] synonym: "glandula vestibularis major" RELATED [BTO:0003115] synonym: "greater vestibular gland" RELATED [MA:0002936] synonym: "greater vestibular glands of Bartholin" RELATED [Wikipedia:Bartholin%27s_gland] synonym: "Tiedemann's gland" EXACT [FMA:9598] synonym: "vulvovaginal gland" EXACT [FMA:9598] xref: BTO:0003115 xref: EMAPA:36429 xref: FMA:9598 xref: GAID:384 xref: MA:0002936 xref: MESH:D001472 xref: NCIT:C12675 xref: SCTID:362244005 xref: Wikipedia:Bartholin's_gland is_a: UBERON:0000414 {source="MP"} ! mucous gland is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011826 ! vestibular gland is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0019319 ! exocrine gland of integumental system relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus property_value: editor_note "resolve difference in WP vs MP, superficial vs deep perineal pouch" xsd:string [Term] id: UBERON:0000461 name: minor vestibular gland def: "Small mucous glands opening upon the vestibular mucous membrane between the urethral and the vaginal orifice." [BTO:0003116] subset: organ_slim synonym: "glandula vestibular minor" EXACT [FMA:20019] synonym: "glandula vestibulares minor" RELATED [BTO:0003116] synonym: "Guerin's gland" RELATED [BTO:0003116] synonym: "Guérin's gland" RELATED [] synonym: "lesser vestibular gland" EXACT [FMA:20019] synonym: "paraurethral gland" RELATED [BTO:0003116] synonym: "periurethral gland" RELATED [BTO:0003116] synonym: "Schueller's gland" RELATED [BTO:0003116] synonym: "Skene gland" RELATED INCONSISTENT [] synonym: "Skene's gland" RELATED INCONSISTENT [BTO:0003116] synonym: "urethral gland of female urethra" RELATED [BTO:0003116] xref: BTO:0003116 xref: FMA:20019 xref: NCIT:C61122 xref: SCTID:279869001 is_a: UBERON:0010145 {source="ncithesaurus"} ! paraurethral gland is_a: UBERON:0010187 ! female urethral gland is_a: UBERON:0011826 ! vestibular gland property_value: editor_note "compare with Skene's gland" xsd:string property_value: structure_notes "check and part_of relationships to mammalian vulva / urethra" xsd:string [Term] id: UBERON:0000462 name: obsolete villus is_obsolete: true [Term] id: UBERON:0000463 name: organism substance def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: pheno_slim subset: upper_level synonym: "body fluid or substance" EXACT [MA:0002450] synonym: "body substance" EXACT [FMA:9669] synonym: "organism substance" EXACT [CARO:0000004] synonym: "portion of body substance" EXACT [FMA:9669] synonym: "portion of organism substance" EXACT [ZFA:0001487] xref: AAO:0010839 xref: AEO:0000004 xref: BILA:0000004 xref: CALOHA:TS-2101 xref: CARO:0000004 xref: EHDAA2:0003004 xref: EMAPA:35178 xref: FBbt:00007019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9669 xref: galen:BodySubstance xref: HAO:0000004 xref: MA:0002450 xref: NCIT:C13236 xref: SPD:0000008 xref: TAO:0001487 xref: TGMA:0001824 xref: VHOG:0001726 xref: XAO:0004001 xref: ZFA:0001487 is_a: UBERON:0000465 ! material anatomical entity relationship: part_of UBERON:0000468 {notes="this relationship may be too strong and may be weakened in future"} ! multicellular organism relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000464 name: anatomical space def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level synonym: "anatomical spaces" RELATED OMO:0003004 [ZFA:0001643] synonym: "lumen" BROAD [] synonym: "lumen space" EXACT [] synonym: "space" BROAD [] xref: AAO:0010110 xref: AEO:0000005 xref: BILA:0000005 xref: CARO:0000005 xref: EHDAA2:0003005 xref: FBbt:00007017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5897 xref: HAO:0000005 xref: NCIT:C94478 xref: TAO:0001668 xref: TGMA:0001825 xref: UMLS:C0524461 {source="ncithesaurus:Lumen_Space"} xref: VHOG:0001728 xref: XAO:0003190 xref: ZFA:0001643 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000465 name: material anatomical entity def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level xref: AAO:0010264 xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 xref: FBbt:00007016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 xref: TGMA:0001826 xref: VHOG:0001721 is_a: UBERON:0001062 ! anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000466 name: immaterial anatomical entity def: "Anatomical entity that has no mass." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level synonym: "immaterial physical anatomical entity" EXACT [FMA:67112] xref: AAO:0010265 xref: AEO:0000007 xref: BILA:0000007 xref: CARO:0000007 xref: EHDAA2:0003007 xref: FBbt:00007015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67112 xref: HAO:0000007 xref: TAO:0001835 xref: TGMA:0001827 xref: VHOG:0001727 is_a: UBERON:0001062 ! anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000467 name: anatomical system def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011] subset: common_anatomy subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "anatomical systems" RELATED OMO:0003004 [ZFA:0001439] synonym: "body system" EXACT [BIRNLEX:14] synonym: "connected anatomical system" EXACT [CARO:0000011] synonym: "organ system" EXACT [] synonym: "system" BROAD [GO:0048731] xref: AAO:0000007 xref: AEO:0000011 xref: BILA:0000011 xref: BIRNLEX:14 xref: BSA:0000049 xref: CALOHA:TS-2088 xref: CARO:0000011 xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 xref: FBbt:00004856 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 xref: IDOMAL:0002460 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MA:0000003 xref: NCIT:C12919 xref: SCTID:278195005 xref: TAO:0001439 xref: TGMA:0001831 xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"} xref: VHOG:0001725 xref: WBbt:0005746 xref: WBbt:0005763 xref: Wikipedia:Organ_system xref: XAO:0003002 xref: ZFA:0001439 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 relationship: present_in_taxon NCBITaxon:9606 relationship: seeAlso EHDAA2:0001330 [Term] id: UBERON:0000468 name: multicellular organism def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, http://orcid.org/0000-0001-9114-8737, Wikipedia:Multi-cellular_organism] subset: common_anatomy subset: efo_slim subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "body" RELATED [AEO:0000103, BIRNLEX:18, FMA:256135, NCIT:C13041] synonym: "Koerper" RELATED [BTO:0001489] synonym: "multi-cellular organism" EXACT [CARO:0000012] synonym: "organism" BROAD [FBbt:00000001, VHOG:0000671, WBbt:0007833] synonym: "whole body" RELATED [BTO:0001489] synonym: "whole organism" RELATED [FBbt:00000001] xref: AAO:0010026 xref: AEO:0000191 xref: BILA:0000012 xref: BIRNLEX:18 xref: BSA:0000038 xref: BTO:0000042 xref: CARO:0000012 xref: EFO:0002906 xref: EHDAA2:0003103 xref: EHDAA2:0003191 xref: EHDAA:1 xref: EMAPA:25765 xref: EV:0100016 xref: FBbt:00000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:256135 xref: galen:Organism xref: HAO:0000012 xref: NCIT:C13041 xref: ncithesaurus:Whole_Organism xref: SCTID:243928005 xref: TADS:0000001 xref: TAO:0001094 xref: TGMA:0001832 xref: VHOG:0000671 xref: WBbt:0007833 xref: Wikipedia:Multi-cellular_organism xref: XAO:0003004 xref: ZFA:0001094 is_a: UBERON:0010000 ! multicellular anatomical structure relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: editor_note "TODO - split body and mc organism? body continues after death stage" xsd:string property_value: has_relational_adjective "organismal" xsd:string [Term] id: UBERON:0000470 name: obsolete cell part def: "Anatomical structure that is a direct part of the cell." [http://orcid.org/0000-0001-9114-8737] subset: upper_level synonym: "cell component" RELATED [CARO:0000014] property_value: editor_note "TODO - move metadata to GO and obsolete this class once homes have been found for existing children. Note the inconsistency between the usage of the label 'cell component' in GO and CARO" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/489" xsd:anyURI is_obsolete: true consider: AAO:0010271 consider: BILA:0000014 consider: CARO:0000014 consider: FBbt:00007012 consider: FMA:86454 consider: GO:0044464 consider: HAO:0000014 consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-1337158144 consider: NCIT:C34070 consider: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA consider: TGMA:0001834 consider: UMLS:C1178969 {source="ncithesaurus:Cell_Part"} [Term] id: UBERON:0000471 name: compound organ component def: "Multi-tissue structure that is part of a compound organ." [CARO:0000019, http://orcid.org/0000-0001-9114-8737] subset: upper_level synonym: "compound organ components" RELATED OMO:0003004 [ZFA:0001489] xref: AAO:0010017 xref: AEO:0000019 xref: BILA:0000019 xref: CARO:0000019 xref: EHDAA2:0003019 xref: HAO:0000019 xref: TAO:0001489 xref: TGMA:0001835 xref: XAO:0003039 xref: ZFA:0001489 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0003103 ! compound organ property_value: curator_notes "this class was introduced for consistency with CARO, however, it has yet to be used in this or other ontologies. It may be retired in the future" xsd:string [Term] id: UBERON:0000472 name: simple organ def: "Multi-tissue structure that is not part of a compound organ." [CARO:0000021, http://orcid.org/0000-0001-9114-8737] subset: upper_level synonym: "simple organs" RELATED OMO:0003004 [ZFA:0001492] xref: AAO:0010051 xref: AEO:0000190 xref: BILA:0000021 xref: CARO:0000021 xref: EHDAA2:0003190 xref: HAO:0000021 xref: TAO:0001492 xref: TGMA:0001836 xref: XAO:0003038 xref: ZFA:0001492 is_a: UBERON:0000062 ! organ property_value: curator_notes "this class was introduced for consistency with CARO, however, it has yet to be used in this or other ontologies. It may be retired in the future" xsd:string [Term] id: UBERON:0000473 name: testis alt_id: UBERON:0002117 def: "A gonad of a male animal. A gonad produces and releases sperm." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "gonad of male genitalia" EXACT [OBOL:automatic] synonym: "gonad of male reproductive system" EXACT [OBOL:automatic] synonym: "male gonad" EXACT [OBOL:automatic] synonym: "orchis" RELATED [BTO:0001363] synonym: "testes" RELATED OMO:0003004 [] synonym: "testicle" EXACT [FMA:7210] synonym: "testiculus" RELATED OMO:0003011 [BTO:0001363] xref: AAO:0000606 xref: BILA:0000124 xref: BSA:0000085 xref: BTO:0001363 xref: CALOHA:TS-1030 xref: EFO:0000984 xref: EHDAA2:0002007 xref: EHDAA:8146 xref: EMAPA:17972 xref: EV:0100102 xref: FBbt:00004928 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7210 xref: GAID:396 xref: galen:Testis xref: HAO:0001007 xref: MA:0000411 xref: MAT:0000132 xref: MESH:D013737 xref: MIAA:0000132 xref: NCIT:C12412 xref: SCTID:181431007 xref: TAO:0000598 xref: UMLS:C0039597 {source="ncithesaurus:Testis"} xref: VHOG:0000252 xref: WBbt:0006794 xref: Wikipedia:Testis xref: XAO:0000157 xref: ZFA:0000598 is_a: UBERON:0000991 ! gonad is_a: UBERON:0003135 ! male reproductive organ relationship: develops_from UBERON:0009117 ! indifferent gonad property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Gray1144.png" xsd:anyURI property_value: external_definition "Male reproductive organ.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000598", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "testicular" xsd:string property_value: homology_notes "(...) while it is likely that Urbilateria lacked a complex somatic reproductive system, it is at present impossible to speculate on whether or not it possessed a true gonad, let alone any other somatic adaptations for reproduction (reference 1); Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved (reference 2).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000252", ontology="VHOG", source="DOI:10.1093/icb/icm052 Extavour CGM, Gray anatomy: phylogenetic patterns of somatic gonad structures and reproductive strategies across the Bilateria. Integrative and Comparative Biology (2007), DOI:10.1146/annurev.cellbio.042308.13350 DeFalco T and Capel B, Gonad morphogenesis in vertebrates: divergent means to a convergent end. Annual review of cell and developmental biology (2009)", source="http://bgee.unil.ch/"} property_value: taxon_notes "The testes are descended in metatherian and eutherian mammals, first transabdominally, then inguinoscrotally" xsd:string {source="ISBN:0123971756", taxon="NCBITaxon:40674"} [Term] id: UBERON:0000474 name: female reproductive system def: "The organs and associated structures associated with bearing offspring in a female animal." [http://orcid.org/0000-0002-6601-2165, MP:0001119, Wikipedia:Female_genitalia] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "female genital system" RELATED [] synonym: "female genital tract" RELATED [] synonym: "female genitalia" RELATED [] synonym: "female genitals" RELATED OMO:0003004 [XAO:0000156] synonym: "female organism genitalia" EXACT [OBOL:automatic] synonym: "female organism reproductive system" EXACT [OBOL:automatic] synonym: "female reproductive tract" RELATED [MA:0000381] synonym: "genitalia of female organism" EXACT [OBOL:automatic] synonym: "gynaecological tissue" RELATED [BTO:0000083] synonym: "reproductive system of female organism" EXACT [OBOL:automatic] synonym: "systema genitale femininum" RELATED [BTO:0000083] xref: BTO:0000083 xref: CALOHA:TS-1303 xref: EFO:0000969 xref: EHDAA2:0000506 xref: EHDAA:8116 xref: EMAPA:17959 xref: EV:0100110 xref: FBbt:00004864 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45663 xref: GAID:364 xref: HAO:0000324 xref: MA:0000381 xref: MESH:D005836 xref: MIAA:0000028 xref: NCIT:C12402 xref: SCTID:361386004 xref: TGMA:0000635 xref: UMLS:C0700038 {source="ncithesaurus:Female_Reproductive_System"} xref: VHOG:0000726 xref: Wikipedia:Female_genitalia xref: WikipediaCategory:Female_reproductive_system xref: XAO:0000156 is_a: UBERON:0000990 ! reproductive system relationship: part_of UBERON:0003100 ! female organism relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg" xsd:anyURI property_value: homology_notes "By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000726", ontology="VHOG", source="ISBN:978-0792383369 Lombardi J, Comparative vertebrate reproduction (1998) p.43", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000475 name: organism subdivision def: "Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." [CARO:0000032, CARO:DOS, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: efo_slim subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "anatomic region" EXACT [MA:0002433] synonym: "body part" RELATED [] synonym: "body region" RELATED [FMA:7153] synonym: "cardinal body part" RELATED [FMA:7153] xref: AAO:0010053 xref: AEO:0000032 xref: BILA:0000032 xref: BIRNLEX:7 xref: CALOHA:TS-2084 xref: CARO:0000032 xref: EFO:0000808 xref: EHDAA2:0003032 xref: EMAPA:36031 xref: FBbt:00007009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7153 xref: galen:BodyPart xref: HAO:0000032 xref: MA:0002433 xref: MAT:0000293 xref: MESH:D001829 xref: MIAA:0000293 xref: NCIT:C32221 xref: TAO:0001308 xref: TGMA:0001840 xref: UMLS:C0229962 {source="ncithesaurus:Body_Part"} xref: VHOG:0001758 xref: Wikipedia:Body_part xref: XAO:0003013 xref: ZFA:0001308 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: editor_note "Reflects CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency" xsd:string [Term] id: UBERON:0000476 name: acellular anatomical structure def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: vertebrate_core synonym: "acellular anatomical structures" RELATED OMO:0003004 [ZFA:0000382] xref: AAO:0010268 xref: AEO:0000040 xref: BILA:0000040 xref: CARO:0000040 xref: EHDAA2:0003040 xref: FBbt:00007013 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 xref: TGMA:0001841 xref: XAO:0003162 xref: ZFA:0000382 is_a: UBERON:0000061 ! anatomical structure relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000477 name: anatomical cluster def: "Anatomical group whose component anatomical structures lie in close proximity to each other." [FBbt:00007277] subset: common_anatomy subset: upper_level xref: FBbt:00007277 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: VHOG:0001737 is_a: UBERON:0034923 ! disconnected anatomical group relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000478 name: extraembryonic structure def: "A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." [CARO:DOS, http://orcid.org/0000-0001-9114-8737, https://cedar.bio.indiana.edu/trac/env/ontologies/ticket/279] comment: see also conceptus extraembryonic component in EHDAA2. subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "extra-embryonic structure" EXACT [] synonym: "extraembryonic structures" RELATED OMO:0003004 [ZFA:0000020] synonym: "extraembryonic tissue" RELATED [] xref: AAO:0010020 xref: AEO:0000042 xref: BILA:0000042 xref: CALOHA:TS-2119 xref: CARO:0000042 xref: EHDAA2:0003042 xref: EHDAA:46 xref: FBbt:00005835 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:85537 xref: HAO:0000042 xref: NCIT:C34055 xref: SCTID:314908006 xref: TAO:0000020 xref: TGMA:0001843 xref: UMLS:C1282438 {source="ncithesaurus:Extraembryonic_Structure"} xref: VHOG:0000292 xref: XAO:0004005 xref: ZFA:0000020 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0016887 ! entire extraembryonic component [Term] id: UBERON:0000479 name: tissue def: "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation." [CARO:0000043] subset: common_anatomy subset: pheno_slim subset: upper_level synonym: "portion of tissue" EXACT [CARO:0000043] synonym: "simple tissue" NARROW [AEO:0000043] synonym: "tissue portion" EXACT [] xref: AAO:0000607 xref: AAO:0010054 xref: AEO:0000043 xref: BILA:0000043 xref: BIRNLEX:19 xref: CALOHA:TS-2090 xref: CARO:0000043 xref: EHDAA2:0003043 xref: EMAPA:35868 xref: FBbt:00007003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9637 xref: galen:Tissue xref: HAO:0000043 xref: MA:0003002 xref: MESH:D014024 xref: NCIT:C12801 xref: TAO:0001477 xref: TGMA:0001844 xref: UMLS:C0040300 {source="ncithesaurus:Tissue"} xref: VHOG:0001757 xref: WBbt:0005729 xref: XAO:0003040 xref: ZFA:0001477 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: editor_note "changed label and definition to reflect CARO2" xsd:string [Term] id: UBERON:0000480 name: anatomical group def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level xref: AAO:0010008 xref: AEO:0000054 xref: BILA:0000054 xref: CARO:0000054 xref: EHDAA2:0003054 xref: HAO:0000054 xref: IDOMAL:0002459 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001512 xref: TGMA:0001846 xref: VHOG:0001724 xref: XAO:0003001 xref: ZFA:0001512 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: editor_note "Obsoleted in v2 of CARO [https://github.com/obophenotype/caro/issues/2]" xsd:string [Term] id: UBERON:0000481 name: multi-tissue structure def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level synonym: "multi-tissue structures" RELATED OMO:0003004 [ZFA:0001488] xref: AAO:0010048 xref: AEO:0000055 xref: BILA:0000055 xref: CARO:0000055 xref: EHDAA2:0003055 xref: FBbt:00007010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000055 xref: TAO:0001488 xref: TGMA:0001847 xref: VHOG:0001762 xref: XAO:0003037 xref: ZFA:0001488 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0000482 name: basal lamina of epithelium def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [http://orcid.org/0000-0001-9114-8737] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "basal lamina" RELATED [CARO:0000065] synonym: "basal lamina of connective tissue" EXACT [FMA:62918] synonym: "basal laminae" RELATED OMO:0003004 [VHOG:0001592] synonym: "lamina basalis" RELATED OMO:0003011 [Wikipedia:Basal_lamina] xref: AAO:0010269 xref: AEO:0000065 xref: BILA:0000065 xref: CARO:0000065 xref: EHDAA2:0003065 xref: FMA:62918 xref: HAO:0000065 xref: MESH:D001485 xref: NCIT:C32186 xref: NIF_Subcellular:sao1397492660 xref: TAO:0001485 xref: TGMA:0001850 xref: UMLS:C0085872 {source="ncithesaurus:Basal_Lamina"} xref: VHOG:0001592 xref: WBbt:0005756 xref: Wikipedia:Basal_lamina xref: XAO:0003163 xref: ZFA:0001485 is_a: UBERON:0005764 {source="FMA"} ! acellular membrane relationship: part_of UBERON:0005769 {source="FMA"} ! basement membrane of epithelium relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "this class represents a continuous sheet of basal lamina which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'basal lamina' represents a portion of substance on the scale of a single cell." xsd:string property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Basal_lamina.jpg" xsd:anyURI property_value: homology_notes "A basal lamina is certainly present in Bilateria and was evaluated as an autapomorphy of this taxon.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001592", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.57", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000483 name: epithelium def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [http://orcid.org/0000-0001-9114-8737, Wikipedia:Epithelium] comment: Editor note: surface epithelium may contain non-epithelial cells, such as melanocytes, lymphocytes and dendritic cells, within the sheet of epithelial cells. Do we consider these part of the epithelium, or located-in it? subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithelial tissue" EXACT [] synonym: "portion of epithelium" EXACT [FMA:9639] xref: AAO:0000144 xref: AAO:0010055 xref: AEO:0000066 xref: BILA:0000066 xref: BTO:0000416 xref: CALOHA:TS-0288 xref: CARO:0000066 xref: EHDAA2:0003066 xref: EMAPA:32738 xref: FBbt:00007005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 xref: MA:0003060 xref: MESH:D004848 xref: NCIT:C12710 xref: SCTID:31610004 xref: TAO:0001486 xref: UMLS:C0014609 {source="ncithesaurus:Epithelium"} xref: VHOG:0000387 xref: Wikipedia:Epithelium xref: XAO:0003045 xref: ZFA:0001486 is_a: UBERON:0000479 ! tissue property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg" xsd:anyURI property_value: has_relational_adjective "epithelial" xsd:string property_value: homology_notes "The two basic types of metazoan tissue are epithelial and connective. The simplest metazoans, and developmental stages of many primitive invertebrates, consist solely of these two layers. Thus, epithelial and connective tissues may be the primary (original) tissues of metazoans, and both are important in the functional organization of animals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000387", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.59", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000484 name: simple cuboidal epithelium def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [http://orcid.org/0000-0001-9114-8737, Wikipedia:Simple_cuboidal_epithelium] subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex cuboideum" EXACT [] synonym: "simple cuboidal epithelia" RELATED OMO:0003004 [ZFA:0001497] xref: AAO:0010064 xref: AEO:0000067 xref: BILA:0000067 xref: CARO:0000067 xref: EHDAA2:0003067 xref: FMA:45566 xref: HAO:0000067 xref: NCIT:C33553 xref: TAO:0001497 xref: UMLS:C0836134 {source="ncithesaurus:Simple_Cuboidal_Epithelium"} xref: Wikipedia:Simple_cuboidal_epithelium xref: XAO:0004009 xref: ZFA:0001497 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010077 ! cuboidal epithelium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray1133.png" xsd:anyURI property_value: editor_note "needs to be synchronized with CL - there is no distinct cuboidal cell in CL" xsd:string [Term] id: UBERON:0000485 name: simple columnar epithelium def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]." [FMA:FMA, http://orcid.org/0000-0001-9114-8737, Wikipedia:Simple_columnar_epithelium] subset: uberon_slim subset: vertebrate_core synonym: "columnar epithelium" BROAD [EHDAA2:0003068] synonym: "columnar epithlium" BROAD [AEO:0000068] synonym: "epithelium simplex columnare" EXACT [] synonym: "simple columnar epithelia" RELATED OMO:0003004 [ZFA:0001496] synonym: "simple columnar epithelium" EXACT [] xref: AAO:0010063 xref: AEO:0000068 xref: BILA:0000068 xref: CARO:0000068 xref: EHDAA2_RETIRED:0003068 xref: FBbt:00007027 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45567 xref: HAO:0000068 xref: NCIT:C33552 xref: SCTID:32210007 xref: TAO:0001496 xref: UMLS:C0836135 {source="ncithesaurus:Simple_Columnar_Epithelium"} xref: Wikipedia:Simple_columnar_epithelium xref: XAO:0004008 xref: ZFA:0001496 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0012274 ! columnar epithelium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray1059.png" xsd:anyURI [Term] id: UBERON:0000486 name: multilaminar epithelium def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]." [FMA:FMA, http://orcid.org/0000-0001-9114-8737, Wikipedia:Stratified_epithelium] subset: uberon_slim subset: vertebrate_core synonym: "laminated epithelium" RELATED [BTO:0002074] synonym: "stratified epithelium" EXACT [] xref: AAO:0010059 xref: AEO:0000069 xref: BILA:0000069 xref: BTO:0002074 xref: CARO:0000069 xref: EHDAA2:0003069 xref: FMA:45562 xref: HAO:0000069 xref: NCIT:C33622 xref: SCTID:309044005 xref: TAO:0001494 xref: UMLS:C0682575 {source="ncithesaurus:Stratified_Epithelium"} xref: Wikipedia:Stratified_epithelium xref: XAO:0004006 xref: ZFA:0001494 is_a: UBERON:0000483 ! epithelium property_value: external_definition "Epithelium that consists of more than one layer of epithelial cells.[CARO]" xsd:string {date_retrieved="2012-06-20", external_class="CARO:0000069", ontology="CARO", source="FMA:45562", source="http://orcid.org/0000-0001-9114-8737"} [Term] id: UBERON:0000487 name: simple squamous epithelium def: "Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA]." [FMA:45565, http://orcid.org/0000-0001-9114-8737, Wikipedia:Simple_squamous_epithelium] subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex squamosum" EXACT [] synonym: "simple squamous epithelia" RELATED OMO:0003004 [ZFA:0001498] xref: AAO:0010066 xref: AEO:0000070 xref: BILA:0000070 xref: BTO:0002073 xref: CARO:0000070 xref: EHDAA2:0003070 xref: FMA:45565 xref: HAO:0000070 xref: NCIT:C13178 xref: TAO:0001498 xref: UMLS:C0836133 {source="ncithesaurus:Simple_Squamous_Epithelium"} xref: Wikipedia:Simple_squamous_epithelium xref: XAO:0004010 xref: ZFA:0001498 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0006914 ! squamous epithelium property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg" xsd:anyURI property_value: external_definition "Unilaminar epithelium that consists of a single layer of squamous cells.[CARO]" xsd:string {date_retrieved="2012-06-20", external_class="CARO:0000070", ontology="CARO", source="FMA:45565", source="http://orcid.org/0000-0001-9114-8737"} [Term] id: UBERON:0000488 name: atypical epithelium def: "Epithelium that consists of epithelial cells not arranged in one ore more layers." [http://orcid.org/0000-0001-9114-8737] subset: vertebrate_core synonym: "atypical epithelia" RELATED OMO:0003004 [ZFA:0001493] synonym: "heterogenous epithelium" EXACT [] xref: AAO:0010057 xref: AEO:0000071 xref: BILA:0000071 xref: CARO:0000071 xref: EHDAA2:0003071 xref: FMA:61741 xref: HAO:0000071 xref: TAO:0001493 xref: XAO:0004004 xref: ZFA:0001493 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000489 name: cavitated compound organ def: "Compound organ that contains one or more macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] subset: organ_slim subset: upper_level synonym: "cavitated compound organs" RELATED OMO:0003004 [ZFA:0001490] synonym: "cavitated organ" EXACT [FMA:55671] xref: AAO:0010016 xref: AEO:0000072 xref: BILA:0000072 xref: CARO:0000072 xref: EHDAA2:0003072 xref: FMA:55671 xref: HAO:0000072 xref: TAO:0001490 xref: TGMA:0001857 xref: VHOG:0001730 xref: XAO:0003165 xref: ZFA:0001490 is_a: UBERON:0003103 ! compound organ property_value: curator_notes "this class was introduced for consistency with CARO, however, it has yet to be used in this or other ontologies. It may be retired in the future" xsd:string [Term] id: UBERON:0000490 name: unilaminar epithelium def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]." [FMA:45561, http://orcid.org/0000-0001-9114-8737] subset: vertebrate_core synonym: "simple epithelium" EXACT [FMA:45561] synonym: "unilaminar epithelia" RELATED OMO:0003004 [ZFA:0001495] xref: AAO:0010062 xref: AEO:0000073 xref: BILA:0000073 xref: BTO:0002073 xref: CARO:0000073 xref: EHDAA2:0003073 xref: FMA:45561 xref: HAO:0000073 xref: NCIT:C33554 xref: SCTID:309043004 xref: TAO:0001495 xref: UMLS:C0682574 {source="ncithesaurus:Simple_Epithelium"} xref: XAO:0004007 xref: ZFA:0001495 is_a: UBERON:0000483 ! epithelium property_value: editor_note "consider adding disjointness axiom between unilaminar and multilaminar - but note that this will render EHDAA2:0003244 (chorionic trophoblast) unsatisfiable" xsd:string property_value: external_definition "Epithelium that consists of a single layer of epithelial cells.[CARO]" xsd:string {date_retrieved="2012-06-20", external_class="CARO:0000073", ontology="CARO", source="FMA:45561", source="http://orcid.org/0000-0001-9114-8737"} [Term] id: UBERON:0000491 name: solid compound organ def: "Compound organ that does not contain macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] subset: organ_slim subset: upper_level synonym: "solid compound organs" RELATED OMO:0003004 [ZFA:0001491] synonym: "solid organ" RELATED [FMA:55670] xref: AAO:0010019 xref: AEO:0000074 xref: BILA:0000074 xref: CARO:0000074 xref: EHDAA2:0003074 xref: FMA:55670 xref: HAO:0000074 xref: TAO:0001491 xref: TGMA:0001859 xref: XAO:0003164 xref: ZFA:0001491 is_a: UBERON:0003103 ! compound organ property_value: curator_notes "this class was introduced for consistency with CARO, however, it has yet to be used in this or other ontologies. It may be retired in the future. Note also that we place the FMA class 'solid organ' here, and the FMA includes many glands plus the liver as solid organs, which some may find confusing" xsd:string [Term] id: UBERON:0000569 name: ileocecal valve def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [Wikipedia:Ileocecal_valve] subset: human_reference_atlas synonym: "Tulp's valve" RELATED [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis" RELATED OMO:0003011 [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973] xref: FMA:15973 xref: galen:IleocecalValve xref: MESH:D007080 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13066 xref: SCTID:362153007 xref: UMLS:C0020880 {source="ncithesaurus:Ileocecal_Valve"} xref: Wikipedia:Ileocecal_valve is_a: UBERON:0003978 {source="Obol"} ! valve is_a: UBERON:0011185 ! gastrointestinal sphincter relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray1075.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0000642 name: suspensory ligament of duodenum def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery." [Wikipedia:Suspensory_muscle_of_duodenum] synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] synonym: "musculus suspensorius duodeni" EXACT [FMA:20509] synonym: "musculus suspensorius duodeni" RELATED OMO:0003011 [Wikipedia:Suspensory_muscle_of_duodenum] synonym: "suspensory muscle of duodenum" EXACT [FMA:20509] xref: FMA:20509 xref: SCTID:279979000 xref: Wikipedia:Suspensory_muscle_of_duodenum is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray1042.png" xsd:anyURI [Term] id: UBERON:0000711 name: splenius capitis def: "A muscle that arises from the lower half of the ligamentum nuchæ, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebræ and inserts the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line[WP,modified]." [Wikipedia:Splenius_capitis_muscle] synonym: "musculus splenius capitis" RELATED OMO:0003011 [Wikipedia:Splenius_capitis_muscle] synonym: "splenius capitis muscle" EXACT [Wikipedia:Splenius_capitis_muscle] xref: FMA:22653 xref: SCTID:244850004 xref: Wikipedia:Splenius_capitis_muscle is_a: UBERON:0002252 {source="FMA"} ! splenius is_a: UBERON:0002377 ! muscle of neck relationship: part_of UBERON:0012477 ! dorsal part of neck property_value: action_notes "Extend, rotate, and laterally flex the head" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/51/Splenius.png" xsd:anyURI [Term] id: UBERON:0000908 name: hippocampal commissure def: "The triangular subcallosal plate of commissural fibers resulting from the converging of the right and left fornix bundles which exchange numerous fibers and which curve back in the contralateral fornix to end in the hippocampus of the opposite side." [ISBN:0-683-40008-8, MP:0008221] subset: pheno_slim subset: uberon_slim synonym: "commissura hippocampi" EXACT OMO:0003011 [FMA:61970, FMA:TA] synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix] synonym: "commissure of fornix of forebrain" EXACT [FMA:61970] synonym: "commissure of the fornix" RELATED [BAMS:FC, BAMS:FG] synonym: "delta fornicis" EXACT [MP:0008221] synonym: "dorsal hippocampal commissure" EXACT [FMA:61970] synonym: "fornical commissure" EXACT [FMA:61970] synonym: "fornix commissure" EXACT [FMA:61970] synonym: "hippocampal commissures" RELATED [BAMS:hc] synonym: "hippocampus commissure" EXACT [MP:0008221] xref: BAMS:cfx xref: BAMS:dhc xref: BAMS:FC xref: BAMS:FG xref: BAMS:hc xref: BIRNLEX:746 xref: DHBA:10560 xref: DMBA:17769 xref: EMAPA:35404 xref: FMA:61970 xref: HBA:9228 xref: MA:0002723 xref: MBA:618 xref: neuronames:273 xref: SCTID:369115003 xref: UMLS:C0228287 {source="BIRNLEX:746"} xref: Wikipedia:Commissure_of_fornix is_a: UBERON:0005340 {source="MP"} ! dorsal telencephalic commissure relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png" xsd:anyURI [Term] id: UBERON:0000910 name: chyme def: "A semifluid mass of partly digested food expelled by the stomach into the duodenum." [Wikipedia:Chyme] comment: Chyme has a low pH that is countered by the production of bile, helping to further digest food. Chyme is also part liquid and part solid: a thick semifluid mass of partially digested food and digestive secretions that is formed in the stomach and intestine during digestion. synonym: "chymus" EXACT [ENVO:02000026] xref: ENVO:02000026 xref: FMA:62961 xref: Wikipedia:Chyme is_a: UBERON:0006314 {source="WP"} ! bodily fluid is_a: UBERON:0012112 {source="FMA", comment="consider changing to derivation relationship"} ! ingested food [Term] id: UBERON:0000911 name: chyle def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://wordnet.princeton.edu/perl/webwn?s=chyle, Wikipedia:Chyle] xref: ENVO:02000030 xref: FMA:61403 xref: GAID:1187 xref: MESH:D002913 xref: NCIT:C93166 xref: UMLS:C0008730 {source="ncithesaurus:Chyle"} xref: Wikipedia:Chyle is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0000912 name: mucus def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus] xref: CALOHA:TS-2144 xref: ENVO:02000040 xref: FMA:66938 xref: GAID:1164 xref: galen:Mucus xref: MESH:D009093 xref: NCIT:C13259 xref: UMLS:C0026727 {source="ncithesaurus:Mucus"} xref: Wikipedia:Mucus is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid property_value: has_relational_adjective "mucoid" xsd:string property_value: has_relational_adjective "mucous" xsd:string [Term] id: UBERON:0000913 name: interstitial fluid def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [Wikipedia:Interstitial_fluid] subset: pheno_slim synonym: "intercellular fluid" EXACT [ENVO:02000042] synonym: "tissue fluid" EXACT [ENVO:02000042] xref: ENVO:02000042 xref: FMA:9673 xref: NCIT:C120839 xref: Wikipedia:Interstitial_fluid is_a: UBERON:0000463 ! organism substance relationship: mutually_spatially_disjoint_with UBERON:0001969 ! blood plasma relationship: part_of UBERON:0000479 ! tissue [Term] id: UBERON:0000914 name: organismal segment def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segmentation_(biology)] subset: uberon_slim subset: upper_level synonym: "segment" EXACT [FBbt:00000003] synonym: "serial element" EXACT [] xref: FBbt:00000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000929 xref: MAT:0000271 xref: MIAA:0000271 xref: Wikipedia:Segmentation_(biology) is_a: UBERON:0000475 ! organism subdivision property_value: editor_note "review this post-CARO2" xsd:string [Term] id: UBERON:0000915 name: thoracic segment of trunk def: "Subdivision of trunk that lies between the head and the abdomen." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "anterior subdivision of trunk" RELATED [] synonym: "thorax" EXACT [MA:0000022] synonym: "upper body" RELATED [] synonym: "upper trunk" RELATED [FMA:259209] xref: EMAPA:35862 xref: FMA:259209 xref: MA:0000022 xref: SCTID:302551006 xref: Wikipedia:Thorax is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: mutually_spatially_disjoint_with UBERON:0000026 ! appendage relationship: mutually_spatially_disjoint_with UBERON:0000033 ! head relationship: mutually_spatially_disjoint_with UBERON:0002417 ! abdominal segment of trunk property_value: curator_notes "note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest" xsd:string [Term] id: UBERON:0000916 name: abdomen def: "The subdivision of the vertebrate body between the thorax and pelvis. The ventral part of the abdomen contains the abdominal cavity and visceral organs. The dorsal part includes the abdominal section of the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "abdominopelvic region" EXACT [FMA:9577] synonym: "abdominopelvis" EXACT [FMA:9577] synonym: "adult abdomen" RELATED [] synonym: "belly" RELATED [] synonym: "celiac region" RELATED [] xref: BTO:0000020 xref: CALOHA:TS-0001 xref: EFO:0000968 xref: EMAPA:35102 xref: EV:0100011 xref: FMA:9577 xref: GAID:16 xref: galen:Abdomen xref: MA:0000029 xref: MAT:0000298 xref: MESH:D000005 xref: MIAA:0000298 xref: SCTID:302553009 xref: Wikipedia:Abdomen is_a: UBERON:0009569 ! subdivision of trunk relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk property_value: editor_note "Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class" xsd:string property_value: has_relational_adjective "abdominal" xsd:string property_value: has_relational_adjective "celiac" xsd:string [Term] id: UBERON:0000917 name: obsolete abdominal segment synonym: "segment of abdomen" EXACT [OBOL:automatic] is_obsolete: true consider: FBbt:00000021 consider: HAO:0000016 consider: SPD:0000055 consider: UBERON:0002417 [Term] id: UBERON:0000918 name: obsolete yolk def: "The nutritive substance contained in the egg." [FB:gg] synonym: "vegetal yolk mass" BROAD [] synonym: "yolk cell" RELATED [] xref: MAT:0000335 xref: MIAA:0000335 is_obsolete: true consider: BTO:0000371 consider: FBbt:00000035 consider: GO:0060417 consider: UBERON:0007378 consider: XAO:0000281 consider: ZFA:0000084 [Term] id: UBERON:0000919 name: obsolete lipid droplet is_obsolete: true replaced_by: GO:0005811 consider: FMA:62962 consider: GO:0005811 [Term] id: UBERON:0000920 name: egg chorion def: "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [GO:0042600, Wikipedia:Chorion_(egg)] subset: dubious_grouping subset: uberon_slim subset: vertebrate_core synonym: "chorion" RELATED [] synonym: "chorion (egg)" EXACT [] xref: FBbt:00000038 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TAO:0000329 xref: TGMA:0000681 xref: Wikipedia:Chorion_(egg) xref: ZFA:0000329 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0016887 ! entire extraembryonic component property_value: external_definition "The egg shell. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000329", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0000921 name: obsolete pronucleus def: "It is the nucleus of a sperm or an egg cell during the process of fertilization." [Wikipedia:Pronucleus] xref: Wikipedia:Pronucleus is_obsolete: true replaced_by: GO:0045120 consider: FBbt:00000048 consider: FMA:84673 consider: GO:0045120 [Term] id: UBERON:0000922 name: embryo def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "developing organism" RELATED [BILA:0000056] synonym: "developmental tissue" RELATED [] synonym: "embryonic organism" EXACT [BILA:0000056] xref: AAO:0011035 xref: AEO:0000169 xref: BILA:0000056 xref: BSA:0000039 xref: BTO:0000379 xref: CALOHA:TS-0229 xref: EFO:0001367 xref: EHDAA2:0000002 xref: EHDAA2_RETIRED:0003236 xref: EHDAA:38 xref: EMAPA:16039 xref: FBbt:00000052 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69068 xref: GAID:963 xref: http://neurolex.org/wiki/Category\:Embryonic_organism xref: IDOMAL:0000646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MAT:0000226 xref: MESH:D004622 xref: MIAA:0000019 xref: NCIT:C28147 xref: OGEM:000001 xref: SCTID:57991002 xref: UMLS:C0013935 {source="ncithesaurus:Embryo"} xref: VHOG:0001766 xref: Wikipedia:Embryo xref: XAO:0000113 xref: ZFA:0000103 is_a: UBERON:0000468 ! multicellular organism property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2d/Wrinkledfrog_embryos.jpg" xsd:anyURI property_value: external_ontology_notes "Obsoleted in ZFA. Note that embryo is not classified as an embryonic structure - an embryonic structure is only the parts of an embryo" xsd:string {external_ontology="ZFA"} property_value: has_relational_adjective "embryonic" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/503" xsd:anyURI [Term] id: UBERON:0000923 name: germ layer def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [https://github.com/obophenotype/uberon/issues/203, Wikipedia:Germ_layer] comment: Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[https://github.com/obophenotype/uberon/wiki/The-neural-crest] subset: uberon_slim subset: vertebrate_core synonym: "embryonic germ layer" RELATED [] synonym: "embryonic germ layers" RELATED [] synonym: "embryonic tissue" BROAD [FMA:69069] synonym: "germinal layer" EXACT [ncithesaurus:Germinal_Layer] synonym: "primary germ layer" NARROW [GO:0001704, ZFA:0001122] xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: EMAPA:36033 xref: FBbt:00000110 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69069 xref: GAID:1303 xref: MESH:D005855 xref: NCIT:C12950 xref: NCIT:C54105 xref: TAO:0001122 xref: UMLS:C0920502 {source="ncithesaurus:Embryonic_Tissue"} xref: UMLS:C1708239 {source="ncithesaurus:Germinal_Layer"} xref: VHOG:0001223 xref: Wikipedia:Germ_layer xref: XAO:0003011 xref: ZFA:0001122 is_a: UBERON:0010316 ! germ layer / neural crest property_value: homology_notes "The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001223", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) Limb development and evolution, p.722", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000924 name: ectoderm def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "embryonic ectoderm" EXACT [VHOG:0000153] xref: AAO:0000137 xref: BILA:0000036 xref: BTO:0000315 xref: CALOHA:TS-0216 xref: EFO:0000414 xref: EHDAA2:0000428 xref: EMAPA:16069 xref: EV:0100003 xref: FBbt:00000111 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 xref: MAT:0000173 xref: MESH:D004475 xref: MIAA:0000173 xref: NCIT:C12703 xref: SCTID:362851007 xref: TAO:0000016 xref: UMLS:C0013574 {source="ncithesaurus:Ectoderm"} xref: VHOG:0000153 xref: Wikipedia:Ectoderm xref: XAO:0000001 xref: ZFA:0000016 is_a: UBERON:0000923 ! germ layer relationship: immediate_transformation_of UBERON:0006601 {source="Bgee:AN"} ! presumptive ectoderm property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png" xsd:anyURI property_value: external_definition "Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000137", ontology="AAO", source="AAO:EJS"} property_value: has_relational_adjective "ectodermal" xsd:string property_value: homology_notes "The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000153", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) Limb development and evolution, p.722", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000925 name: endoderm def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "entoderm" RELATED DEPRECATED [DOI:10.5962/bhl.title.1013] xref: AAO:0000139 xref: BILA:0000038 xref: BTO:0000800 xref: CALOHA:TS-0273 xref: EFO:0002545 xref: EHDAA2:0000436 xref: EMAPA:16062 xref: EV:0100005 xref: FBbt:00000125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69071 xref: GAID:1305 xref: MAT:0000175 xref: MESH:D004707 xref: MIAA:0000175 xref: NCIT:C12706 xref: SCTID:362855003 xref: TAO:0000017 xref: UMLS:C0014144 {source="ncithesaurus:Endoderm"} xref: VHOG:0000154 xref: Wikipedia:Endoderm xref: XAO:0000090 xref: ZFA:0000017 is_a: UBERON:0000923 ! germ layer relationship: immediate_transformation_of UBERON:0006595 {source="Bgee:AN"} ! presumptive endoderm property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Endoderm2.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray10.png" xsd:anyURI property_value: has_relational_adjective "endodermal" xsd:string property_value: homology_notes "The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000154", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) Limb development and evolution, p.722", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000926 name: mesoderm alt_id: UBERON:0003263 def: "The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "embryonic mesoderm" RELATED [VHOG:0000152] synonym: "entire mesoderm" RELATED [https://orcid.org/0000-0002-6601-2165, SCTID:362854004] synonym: "mesodermal mantle" RELATED [] xref: AAO:0000304 xref: BILA:0000037 xref: BTO:0000839 xref: CALOHA:TS-0623 xref: EFO:0001981 xref: EHDAA2:0001128 xref: EHDAA:124 xref: EHDAA:160 xref: EHDAA:183 xref: EMAPA:16083 xref: EV:0100006 xref: FBbt:00000126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69072 xref: GAID:522 xref: MAT:0000174 xref: MESH:D008648 xref: MIAA:0000174 xref: NCIT:C12750 xref: SCTID:362854004 xref: TAO:0000041 xref: UMLS:C0025485 {source="ncithesaurus:Mesoderm"} xref: VHOG:0000152 xref: Wikipedia:Mesoderm xref: XAO:0000050 xref: ZFA:0000041 is_a: UBERON:0000923 {notes="sometimes not considered primary"} ! germ layer relationship: immediate_transformation_of UBERON:0006603 {source="Bgee:AN"} ! presumptive mesoderm relationship: never_in_taxon NCBITaxon:6040 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e8/Mesoderm.png" xsd:anyURI property_value: external_definition "Primary germ layer that is the middle of the embryonic germ layers.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000304", ontology="AAO", source="AAO:EJS"} property_value: has_relational_adjective "mesodermal" xsd:string property_value: homology_notes "The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000152", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) Limb development and evolution, p.722", source="http://bgee.unil.ch/"} property_value: taxon_notes "sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[http://www.nature.com/nature/journal/v466/n7307/full/nature09201.html]. Mesoderm may not be homologous across verteberates" xsd:string {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} [Term] id: UBERON:0000927 name: mesectoderm def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570] comment: Split term? The part of the mesenchyme derived from ectoderm, especially from the embryonic neural crest from which the pigment cells, meninges, and most of the branchial cartilages develop.[TFD] subset: efo_slim subset: uberon_slim synonym: "MesEc" RELATED [] xref: EFO:0003336 xref: FBbt:00000136 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000243 xref: MIAA:0000243 is_a: UBERON:0000923 ! germ layer property_value: has_relational_adjective "mesectodermal" xsd:string [Term] id: UBERON:0000928 name: obsolete embryonic segment synonym: "segment - embryonic" EXACT [] is_obsolete: true consider: FBbt:00000154 consider: MAT:0000244 consider: MIAA:0000244 [Term] id: UBERON:0000929 name: pharyngeal branch of vagus nerve def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_part_of_vagus_nerve] subset: uberon_slim synonym: "pharyngeal branch" EXACT [FMA:6234] synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234] synonym: "pharyngeal branch of vagus" EXACT [FMA:6234] synonym: "ramus pharyngealis nervi vagalis" EXACT [FMA:6234] synonym: "ramus pharyngeus" EXACT OMO:0003011 [FMA:6234, FMA:TA] synonym: "ramus pharyngeus nervi vagi" RELATED OMO:0003011 [Wikipedia:Pharyngeal_part_of_vagus_nerve] synonym: "tenth cranial nerve pharyngeal branch" EXACT [FMA:6234] synonym: "vagal pharyngeal branch" EXACT [FMA:6234] synonym: "vagus nerve pharyngeal branch" EXACT [FMA:6234] xref: FMA:6234 xref: SCTID:280298006 xref: Wikipedia:Pharyngeal_part_of_vagus_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001005 ! respiratory airway property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI [Term] id: UBERON:0000930 name: stomodeum def: "Anterior part of the embryonic digestive tract that develops into a mouth. The stomodeum includes as parts an invagination of the ectoderm and the stomodeal cavity." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/326, Wikipedia:Stomodeum] subset: grouping_class subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "mouth pit" RELATED [EMAPA:16263] synonym: "mouth primordium" EXACT [XAO:0000269] synonym: "oral ectoderm" RELATED [ZFA:0001290, ZFIN:ZDB-PUB-100726-23] synonym: "oral pit" RELATED [EMAPA:16263] synonym: "primitive oral cavity" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum] synonym: "stomodaeum" EXACT [] synonym: "stomodeal-hypophyseal primordium" BROAD [XAO:0000269] xref: BTO:0004224 xref: EHDAA2:0001929 xref: EMAPA:16263 xref: FBbt:00000439 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:295846 xref: NCIT:C34306 xref: TAO:0001290 xref: TGMA:0000135 xref: UMLS:C1514977 {source="ncithesaurus:Stomodeum"} xref: Wikipedia:Stomodeum xref: XAO:0000269 xref: ZFA:0001290 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0035804 ! future mouth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png" xsd:anyURI property_value: editor_note "consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence" xsd:string property_value: external_definition "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001290", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx" xsd:string {source="MP:0012522", taxon="NCBITaxon:40674"} property_value: has_relational_adjective "stomodeal" xsd:string property_value: taxon_notes "This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity." xsd:string [Term] id: UBERON:0000931 name: proctodeum def: "Inward fold on the surface of the embryonic ectoderm that develops into an ectodermal terminal part of the digestive tract." [https://github.com/obophenotype/uberon/issues/685, https://sourceforge.net/p/fbbtdv/tickets/52, ZFA:0000066] subset: uberon_slim synonym: "amnioproctodeal invagination" NARROW [FBbt:00000123] synonym: "anal pit" RELATED [VHOG:0000139] synonym: "anus porus" RELATED [XAO:0001019] synonym: "embryonic proctodaeum" EXACT [] synonym: "proctodaeum" EXACT [] xref: AAO:0011087 xref: EHDAA2:0000121 xref: EMAPA:25038 xref: FBbt:00000123 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NCIT:C34278 xref: TAO:0000066 xref: UMLS:C0231054 {source="ncithesaurus:Proctodeum"} xref: VHOG:0000139 xref: Wikipedia:Proctodeum xref: XAO:0001019 xref: ZFA:0000066 is_a: UBERON:0016566 {source="EHDAA2"} ! pit relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! presumptive gut property_value: editor_note "removed WBbt:0006795 'proctodeum' - junction between the alimentary and genital tracts in the male." xsd:string property_value: external_definition "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000066", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011087", ontology="AAO", source="ZFA:0000066"} property_value: has_relational_adjective "proctodeal" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/685" xsd:anyURI [Term] id: UBERON:0000932 name: obsolete ventral longitudinal muscle comment: originally unified on basis of terminological similarity is_obsolete: true consider: FBbt:00000482 consider: WBbt:0005814 [Term] id: UBERON:0000933 name: chordate pharyngeal muscle def: "A muscle that acts on the pharynx[WP, vetted]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Pharyngeal_muscles] comment: Innervation notes: They are innervated by the pharyngeal branch of the Vagus nerve (CN X) with the exception of the stylopharyngeus muscle which is innervated by the glossopharyngeal nerve (CN IX).[WP] subset: efo_slim subset: pheno_slim synonym: "branchial muscle" EXACT [ZFA:0000172] synonym: "branchial muscles" RELATED OMO:0003004 [TAO:0000172] synonym: "muscle of pharynx" EXACT [] synonym: "muscle organ of pharynx" EXACT [OBOL:automatic] synonym: "musculi pharyngis" RELATED OMO:0003011 [Wikipedia:Pharyngeal_muscles] synonym: "musculus pharyngis" RELATED [BTO:0001048] synonym: "pharyngeal muscle" EXACT [] synonym: "pharynx muscle" EXACT [] synonym: "pharynx muscle organ" EXACT [OBOL:automatic] synonym: "tunica muscularis pharyngis" RELATED OMO:0003011 [Wikipedia:Pharyngeal_muscles] xref: BTO:0001048 xref: EFO:0003504 xref: FMA:46619 xref: GAID:154 xref: MA:0001797 xref: MESH:D010609 xref: NCIT:C13075 xref: SCTID:244798004 xref: TAO:0000172 xref: UMLS:C0031346 {source="ncithesaurus:Pharyngeal_Muscle"} xref: Wikipedia:Pharyngeal_muscles xref: ZFA:0000172 is_a: UBERON:0001630 ! muscle organ relationship: fma_set_term FMA:67169 relationship: part_of UBERON:0004467 ! musculature of pharynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray1030.png" xsd:anyURI property_value: external_definition "A pharyngeal muscle is any muscle that forms part of the pharynx[GO]." xsd:string {date_retrieved="2012-06-30", external_class="GO:0043282", notes="does not quite work for some muscles such as stylopharyngeus", ontology="GO", source="GOC:go_curators"} [Term] id: UBERON:0000934 name: ventral nerve cord def: "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." [BTO:0002328, GO:0007419, WB:Paper00000938, Wikipedia:Ventral_nerve_cord] subset: efo_slim subset: uberon_slim synonym: "ventral cord" EXACT [GO:0007419] xref: BTO:0002328 xref: EFO:0000896 xref: FBbt:00005097 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000339 xref: MIAA:0000339 xref: NLX:146329 xref: WBbt:0005829 xref: Wikipedia:Ventral_nerve_cord is_a: UBERON:0005053 ! primary nerve cord relationship: never_in_taxon NCBITaxon:7711 property_value: external_definition "A cluster of neurons that extends posteriorly from the embryonic and larval brain and is surrounded by a connective tissue sheath." xsd:string {source="FBbt:00001102"} property_value: taxon_notes "The ventral nerve cords make up the nervous system of some phyla of the invertebrates, particularly within the nematodes, annelids and the arthropods. It usually consists of cerebral ganglia anteriorly with the nerve cords running down the ventral ('belly', as opposed to back) plane of the organism. This characteristic is important in qualifying the difference compared to the chordates, which have a dorsal nerve cord. Ventral nerve cords from anterior to posterior (the thoracic and abdominal tagma in the arthropods) are made up of segmented ganglia that are connected by a tract of nerve fibers passing from one side to the other of the nerve cord called commissures. The complete system bears some likeness to a rope ladder. In some animals the bilateral ganglia are fused into a single large ganglion per segment. This characteristic is found mostly in the insects." xsd:string [Term] id: UBERON:0000935 name: anterior commissure def: "A bundle of myelinated nerve fibers passing transversely through the lamina terminalis and connecting symmetrical parts of the two cerebral hemispheres; it consists of a smaller anterior part (pars anterior commissurae anterioris) and a larger posterior part (pars posterior commissurae anterioris)." [BTO:0002169] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "AC" RELATED OMO:0003000 [NLX:144088] synonym: "anterior cerebral commissure" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "anterior commissural nucleus" RELATED [BAMS:AC] synonym: "commissura anterior" RELATED OMO:0003011 [Wikipedia:Anterior_commissure] synonym: "commissura anterior cerebri" EXACT OMO:0003011 [NeuroNames:205] synonym: "commissura rostral" RELATED [] synonym: "commissura rostralis" EXACT [] synonym: "paleocortical commissure" RELATED [NeuroNames:205] synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure] synonym: "rostral commissure" RELATED [NeuroNames:205] xref: BAMS:AC xref: BAMS:Ac xref: BAMS:ac xref: BAMS:AG xref: BIRNLEX:1557 xref: BM:Tel-AC xref: BTO:0002169 xref: DHBA:10559 xref: DMBA:17751 xref: EMAPA:19038 xref: FMA:61961 xref: HBA:9221 xref: MA:0002722 xref: NCIT:C32086 xref: neuronames:205 xref: NLX:144088 xref: SCTID:279313001 xref: SCTID:369119009 xref: TAO:0001108 xref: UMLS:C0152335 {source="BIRNLEX:1557", source="ncithesaurus:Anterior_Commissure"} xref: VHOG:0001558 xref: Wikipedia:Anterior_commissure xref: ZFA:0001108 is_a: UBERON:0002473 {source="FMA", source="MA"} ! intercerebral commissure is_a: UBERON:0005341 {source="MP"} ! ventral commissure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: homology_notes "In all vertebrates the thin structure that connects the two halves of the telencephalon shows a ridge-like thickening at the basal side known as the anterior commissure.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001558", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20432.x", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000936 name: posterior commissure def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP]. Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [Wikipedia:Posterior_commissure, ZFA:0000320] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caudal commissure" EXACT [FMA:62072, ZFA:0000320] synonym: "commissura epithalami" RELATED OMO:0003011 [NeuroNames:484] synonym: "commissura epithalamica" RELATED OMO:0003011 [NeuroNames:484] synonym: "commissura posterior" RELATED OMO:0003011 [Wikipedia:Posterior_commissure] synonym: "epithalamic commissure" EXACT [FMA:62072] synonym: "posterior commissure (Lieutaud)" RELATED [NeuroNames:484] xref: BAMS:PC xref: BAMS:pc xref: BIRNLEX:1026 xref: BM:MB-Tec-PC xref: DHBA:10567 xref: DMBA:17787 xref: EMAPA:35695 xref: FMA:62072 xref: HBA:9229 xref: MA:0002743 xref: MBA:158 xref: NCIT:C33356 xref: neuronames:484 {source="BIRNLEX:1026"} xref: TAO:0000320 xref: UMLS:C0152327 {source="BIRNLEX:1026", source="ncithesaurus:Posterior_Commissure"} xref: Wikipedia:Posterior_commissure xref: ZFA:0000320 is_a: UBERON:0011590 ! commissure of diencephalon relationship: part_of UBERON:0003931 {source="FMA"} ! diencephalic white matter property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI property_value: editor_note "add connects relationships and check these outside mammalia" xsd:string property_value: external_ontology_notes "part_of brainstem in MA; midbrain tectum in NIF" xsd:string {external_ontology="MA"} [Term] id: UBERON:0000937 name: obsolete proneural cluster comment: obsoleted because inconsistencies arise due to ZFA term being both embryonic and extraembryonic synonym: "proneural clusters" RELATED [ZFA:0000068] is_obsolete: true consider: FBbt:00001135 consider: ZFA:0000068 [Term] id: UBERON:0000939 name: imaginal disc def: "One of the parts of a holometabolous insect larva that will become a portion of the outside of the adult insect during the pupal transformation." [Wikipedia:Imaginal_disc] comment: Though inaginal discs are sometimes described as âepithelial sacsâ, we do not classify them as such, because an âepithelial sacâ is defined in Uberon as being a single epithelium, whereas imaginal discs are made of several epithelia with distinct properties. subset: uberon_slim synonym: "imaginal disk" RELATED [] xref: BTO:0004658 xref: FBbt:00001761 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000064 xref: MESH:D060227 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000064 xref: Wikipedia:Imaginal_disc is_a: UBERON:0000481 {source="FBbt text definition"} ! multi-tissue structure relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:0000941 name: cranial nerve II def: "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, ISBN:0471888893] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "02 optic nerve" EXACT [AAO:0010345] synonym: "2n" BROAD OMO:0003000 [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-II" RELATED [ZFA:0000435] synonym: "cranial II" EXACT [] synonym: "nerve II" RELATED [NeuroNames:289] synonym: "nervus opticus" EXACT OMO:0003011 [] synonym: "nervus opticus [II]" EXACT OMO:0003011 [FMA:50863, FMA:TA] synonym: "optic" RELATED [TAO:0000435] synonym: "optic II" EXACT [EHDAA2:0001313] synonym: "optic II nerve" EXACT [EHDAA2:0001313] synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435] synonym: "optic nerve [II]" EXACT [] synonym: "second cranial nerve" EXACT [] xref: AAO:0010345 xref: BAMS:2n xref: BAMS:IIn xref: BAMS:nII xref: BIRNLEX:1640 xref: CALOHA:TS-0713 xref: DHBA:15544 xref: EFO:0004258 xref: EHDAA2:0001313 xref: EHDAA:6788 xref: EMAPA:17575 xref: FMA:50863 xref: GAID:831 xref: HBA:9307 xref: MA:0001097 xref: MBA:848 xref: MESH:D009900 xref: NCIT:C12761 xref: neuronames:289 {source="BIRNLEX:1640"} xref: SCTID:180938001 xref: TAO:0000435 xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve", source="BIRNLEX:1640"} xref: VHOG:0000543 xref: Wikipedia:Optic_nerve xref: XAO:0000188 xref: ZFA:0000435 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle relationship: develops_from UBERON:0003902 {source="EHDAA2"} ! retinal neural layer relationship: part_of UBERON:0002104 ! visual system relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "Do not classify under 'cranial nerve', as this is not a true nerve - should be classified as evaginated sensory afferent[ISBN:0471888893]" xsd:string property_value: external_definition "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000435", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010345", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "(relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon" xsd:string {external_ontology="MA"} property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup (reference 1); The (optic) stalk persists as the optic nerve (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000543", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429, http://medical-dictionary.thefreedictionary.com/optic+stalk", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000942 name: frontal nerve (branch of ophthalmic) def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "frontal nerve" EXACT [FMA:52638] synonym: "nervus frontalis" RELATED OMO:0003011 [Wikipedia:Frontal_nerve] xref: FMA:52638 xref: NCIT:C32638 xref: SCTID:280219004 xref: UMLS:C0228712 {source="ncithesaurus:Frontal_Nerve"} xref: Wikipedia:Frontal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png" xsd:anyURI [Term] id: UBERON:0000943 name: obsolete labial sensillum is_obsolete: true consider: FBbt:00002721 consider: WBbt:0005107 [Term] id: UBERON:0000944 name: obsolete dorsal branch synonym: "dorsal vein" EXACT [] synonym: "ramus dorsalis" EXACT OMO:0003011 [FMA:76733, FMA:TA] is_obsolete: true consider: FBbt:00003051 consider: FMA:76733 [Term] id: UBERON:0000945 name: stomach def: "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium." [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584, Wikipedia:Stomach] subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior intestine" RELATED [] synonym: "gaster" RELATED [BTO:0001307] synonym: "mesenteron" RELATED [] synonym: "stomach chamber" NARROW [] synonym: "ventriculus" RELATED OMO:0003011 [Wikipedia:Stomach] xref: AAO:0000579 xref: ANISEED:1235297 xref: BTO:0001307 xref: CALOHA:TS-0980 xref: EFO:0000837 xref: EHDAA2:0001915 xref: EHDAA:2993 xref: EMAPA:17021 xref: EV:0100070 xref: FMA:7148 xref: GAID:293 xref: galen:Stomach xref: MA:0000353 xref: MAT:0000051 xref: MESH:D013270 xref: MIAA:0000051 xref: NCIT:C12391 xref: SCTID:181246003 xref: TAO:0002121 xref: UMLS:C0038351 {source="ncithesaurus:Stomach"} xref: VHOG:0000408 xref: Wikipedia:Stomach xref: XAO:0000128 is_a: UBERON:0004921 {source="cjm"} ! subdivision of digestive tract is_a: UBERON:0010039 {source="cjm"} ! food storage organ relationship: never_in_taxon NCBITaxon:7864 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:7878 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:7955 {source="ZFA"} relationship: never_in_taxon NCBITaxon:9259 {source="Wikipedia"} relationship: part_of UBERON:0001041 ! foregut relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagram.svg" xsd:anyURI property_value: external_definition "Portion of alimentary canal with increased circular and longitudinal smooth muscle. Bounded posteriorly by the pyloric sphincter. Mucosal lining has increased folding.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000579", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "It appears that the stomach has an ancient origin. The stomach first appears in the fish lineage. The prevertebrate chordates do not have a true stomach, whereas the cartilaginous and bony fish do. Although most fish do have a true stomach, some fish species appear to have lost the stomach secondarily. The remaining vertebrate lineages do have a true stomach (at least in the adult animal), although there is great variation in the size and shape of the stomach.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000408", ontology="VHOG", source="DOI:10.1046/j.1525-142x.2000.00076.x Smith DM, Grasty RC, Theodosiou NA, Tabin CJ, Nascone-Yoder NM, Evolutionary relationships between the amphibian, avian, and mammalian stomachs. Evolution and development (2000)", source="http://bgee.unil.ch/"} property_value: taxon_notes "We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa" xsd:string {source="WP:Stomach#In_other_animals"} [Term] id: UBERON:0000946 name: cardiac valve def: "A membranous fold of the heart that prevents reflux of fluid." [MESH:A07.541.510, MP:0000285, PMID:7926784] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "heart valve" EXACT [] synonym: "heart valve" RELATED [XAO:0004126] synonym: "heart valves" RELATED [] synonym: "stomodaeal valve" RELATED [] synonym: "valve of heart" EXACT [] synonym: "valvule" RELATED [] xref: BTO:0000564 xref: EMAPA:17869 xref: EV:0100024 xref: FMA:7110 xref: GAID:176 xref: galen:HeartValve xref: MA:0000086 xref: MESH:D006351 xref: NCIT:C12729 xref: SCTID:181285005 xref: TAO:0005065 xref: UMLS:C0018826 {source="ncithesaurus:Cardiac_Valve"} xref: VHOG:0000818 xref: Wikipedia:Cardiac_valve xref: XAO:0004126 xref: ZFA:0005065 is_a: UBERON:0003978 ! valve is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion relationship: part_of UBERON:0000948 ! heart relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "One of the four structures within the heart that prevent backflow of blood by opening and closing with each heartbeat. The valves include two semilunar valves, the aortic and pulmonary; the mitral or bicuspid valve; and the tricuspid valve. The valves permit blood flow in only one direction. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000818", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/heart+valve"} property_value: homology_notes "Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000818", ontology="VHOG", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)", source="http://bgee.unil.ch/"} property_value: terminology_notes "Rector et al: One might be tempted to define 'heart valve' equivalently to 'valve in the heart', and 'valve' as a 'structure which functions as a valve'. But this combination results in the 'foramen ovale' being classified as a kind of 'heart valve', since it is undoubtedly located in the heart and functions as a valve" xsd:string [Term] id: UBERON:0000947 name: aorta def: "The main trunk of the systemic arterial system that carries blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MESH:A07.231.114.056, MP:0000272, Wikipedia:Aorta] subset: efo_slim subset: grouping_class subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "arteria maxima" RELATED OMO:0003011 [Wikipedia:Aorta] synonym: "dorsal aorta" NARROW SENSU [Wikipedia:Aorta#In_other_animals, ZFA:0000014] synonym: "trunk of aortic tree" EXACT [] synonym: "trunk of systemic arterial tree" EXACT [] xref: AAO:0010213 xref: BTO:0000135 xref: CALOHA:TS-0046 xref: EFO:0000265 xref: EMAPA:18601 xref: EV:0100027 xref: FMA:3734 xref: GAID:469 xref: galen:Aorta xref: MA:0000062 xref: MAT:0000035 xref: MESH:D001011 xref: MIAA:0000035 xref: NCIT:C12669 xref: SCTID:181298001 xref: UMLS:C0003483 {source="ncithesaurus:Aorta"} xref: VHOG:0001523 xref: Wikipedia:Aorta xref: XAO:0003010 is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel is_a: UBERON:0003519 ! thoracic cavity blood vessel is_a: UBERON:0013768 ! great vessel of heart relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg" xsd:anyURI property_value: editor_note "This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae." xsd:string {source="WP"} property_value: external_definition "The main artery of the circulatory system which carries oxygenated blood from the heart to all the arteries of the body except those of the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010213", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "aortic" xsd:string property_value: homology_notes "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001523", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620", source="http://bgee.unil.ch/"} property_value: taxon_notes "All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches" xsd:string [Term] id: UBERON:0000948 name: heart def: "A myogenic muscular circulatory organ found in the vertebrate cardiovascular system composed of chambers of cardiac muscle. It is the primary circulatory organ." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Heart] comment: Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" DOI:10.1101/gad.1485706 subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "branchial heart" NARROW SENSU [] synonym: "cardium" RELATED [EMAPA:16105] synonym: "chambered heart" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "vertebrate heart" EXACT [] xref: AAO:0010210 xref: BILA:0000020 xref: BTO:0000562 xref: CALOHA:TS-0445 xref: EFO:0000815 xref: EHDAA2:0000738 xref: EHDAA:420 xref: EMAPA:16105 xref: EV:0100018 xref: FMA:7088 xref: GAID:174 xref: galen:Heart xref: MA:0000072 xref: MAT:0000036 xref: MESH:D006321 xref: MIAA:0000036 xref: NCIT:C12727 xref: SCTID:302509004 xref: TAO:0000114 xref: UMLS:C0018787 {source="ncithesaurus:Heart"} xref: VHOG:0000276 xref: Wikipedia:Heart xref: XAO:0000064 xref: ZFA:0000114 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0007100 ! primary circulatory organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004141 ! heart tube relationship: never_in_taxon NCBITaxon:6239 relationship: never_in_taxon NCBITaxon:7227 relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO"} property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "Blood pumping organ composed of four chambers: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000114", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the circulatory system responsible for pumping blood; composed of three chambers--two atria and one ventricle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "cardiac" xsd:string property_value: homology_notes "As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000276", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000949 name: endocrine system def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "endocrine glandular system" EXACT [EHDAA2:0002224] synonym: "endocrine system" EXACT [] synonym: "systema endocrinum" EXACT [] xref: AAO:0010279 xref: CALOHA:TS-1301 xref: EFO:0002969 xref: EHDAA2:0002224 xref: EMAPA:35306 xref: EV:0100128 xref: FBbt:00005068 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9668 xref: GAID:439 xref: MA:0000012 xref: MESH:D004703 xref: NCIT:C12705 xref: SCTID:278876000 xref: TAO:0001158 xref: UMLS:C0014136 {source="ncithesaurus:Endocrine_System"} xref: VHOG:0000098 xref: Wikipedia:Endocrine_system xref: XAO:0000158 xref: ZFA:0001158 is_a: UBERON:0015204 ! glandular system property_value: external_definition "Anatomical system containing glands which regulates bodily functions though the secretion of hormones.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010279", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "endocrine" xsd:string property_value: homology_notes "Multicellular organisms have complex endocrine systems, allowing responses to environmental stimuli, regulation of development, reproduction, and homeostasis. Nuclear receptors (NRs), a metazoan-specific family of ligand-activated transcription factors, play central roles in endocrine responses, as intermediates between signaling molecules and target genes. The NR family includes ligand-bound and orphan receptors, that is, receptors with no known ligand or for which there is no ligand Pocket. Understanding NR evolution has been further improved by comparison of several completed genomes, particularly those of deuterostomes and ecdysozoans. In contrast, evolution of NR ligands is still much debated. One hypothesis proposes that several independent gains and losses of ligand-binding ability in NRs occurred in protostomes and deuterostomes. A second hypothesis, pertaining to the NR3 subfamily (vertebrate steroid hormone receptors and estrogen related receptor), proposes that before the divergence of protostomes and deuterostomes, there was an ancestral steroid receptor (AncSR) that was ligand-activated and that orphan receptors secondarily lost the ability to bind a ligand. (...) Our analysis reveals that steroidogenesis has been independently elaborated in the 3 main bilaterian lineages (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000098", ontology="VHOG", source="DOI:10.1073/pnas.0812138106 Markov GV, Tavares R, Dauphin-Villemant C, Demeneix BA, Baker ME, Laudet V, Independent elaboration of steroid hormone signaling pathways in metazoans. PNAS (2009)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000950 name: gracilis def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "gracilis muscle" EXACT [BTO:0000536] synonym: "musculus gracilis" EXACT OMO:0003011 [Wikipedia:Gracilis_muscle] xref: BTO:0000536 xref: EMAPA:36231 xref: FMA:43882 xref: galen:Gracilis xref: MA:0002311 xref: NCIT:C52935 xref: SCTID:181689005 xref: UMLS:C0224439 {source="ncithesaurus:Gracilis"} xref: Wikipedia:Gracilis_muscle is_a: UBERON:0004252 ! hindlimb stylopod muscle is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI property_value: editor_note "AAO has minor and major gracilis, which merge together, attaching the pelvic rim to the tibiofibula - this could be grouped with the mammalian gracilis at some level; note the current insertion site is 'tibia' which would be modified for amphibian tibiafibula" xsd:string property_value: taxon_notes "A&P heads in rat, single head in humans[DOI:10.1002/ar.22919]" xsd:string [Term] id: UBERON:0000951 name: rotator muscle of the vertebral column def: "Any of a number of short transversospinal muscles chiefly developed in cervical, lumbar, and thoracic regions, arising from the transverse process of one vertebra and inserted into the root of the spinous process of the next two or three vertebrae above, with nerve supply from the dorsal branches of the spinal nerve, and whose actions rotate the vertebral column." [http://medical-dictionary.thefreedictionary.com/rotator+muscle] synonym: "rotator muscle" BROAD [FMA:23081] xref: FMA:23081 xref: SCTID:244872002 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005174 ! dorsal region element [Term] id: UBERON:0000952 name: obsolete adductor muscle comment: obsoleted as it conflated a generic functional grouping with a specific group of muscles in the leg/hip is_obsolete: true consider: UBERON:0011144 consider: UBERON:0011145 [Term] id: UBERON:0000953 name: obsolete visceral muscle def: "Involuntary non-striated muscle." [Wikipedia:Smooth_muscle] synonym: "adult visceral muscle" RELATED [] synonym: "smooth muscle" EXACT [] xref: Wikipedia:Smooth_muscle property_value: terminology_notes "GO uses visceral and smooth interchangeably" xsd:string is_obsolete: true [Term] id: UBERON:0000954 name: obsolete intestine muscle def: "Intestinal muscle cell, attach to intestine and body wall anterior to anus." [WB:Paper00000653] subset: uberon_slim synonym: "intestinal muscle" EXACT [] is_obsolete: true consider: FBbt:00003537 consider: WBbt:0005796 [Term] id: UBERON:0000955 name: brain def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Brain] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: major_organ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "encephalon" RELATED [BTO:0000142] synonym: "suprasegmental levels of nervous system" RELATED [NeuroNames:21] synonym: "suprasegmental structures" RELATED [NeuroNames:21] synonym: "synganglion" RELATED [] synonym: "the brain" RELATED [NeuroNames:21] xref: AAO:0010478 xref: ABA:Brain xref: BAMS:Br xref: BAMS:Brain xref: BILA:0000135 xref: BIRNLEX:796 xref: BTO:0000142 xref: CALOHA:TS-0095 xref: DHBA:10155 xref: EFO:0000302 xref: EHDAA2:0000183 xref: EHDAA:2641 xref: EHDAA:6485 xref: EMAPA:16894 xref: EV:0100164 xref: FBbt:00005095 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:50801 xref: GAID:571 xref: galen:Brain xref: HBA:4005 xref: MA:0000168 xref: MAT:0000098 xref: MBA:8 xref: MBA:997 xref: MESH:D001921 xref: MIAA:0000098 xref: NCIT:C12439 xref: neuronames:21 {source="BIRNLEX:796"} xref: PBA:3999 xref: SCTID:258335003 xref: TAO:0000008 xref: UMLS:C0006104 {source="ncithesaurus:Brain", source="BIRNLEX:796"} xref: UMLS:C1269537 {source="BIRNLEX:796"} xref: VHOG:0000157 xref: Wikipedia:Brain xref: XAO:0000010 xref: ZFA:0000008 is_a: UBERON:0000062 {source="GO"} ! organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: immediate_transformation_of UBERON:0006238 {source="Bgee:AN"} ! future brain relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: editor_note "requires review for applicability to invertebrate structures, e.g. synganglion" xsd:string property_value: external_definition "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000008", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010478", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000157", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000956 name: cerebral cortex def: "The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex." [BIRNLEX:1494] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brain cortex" RELATED [BTO:0000233] synonym: "cortex cerebralis" RELATED OMO:0003011 [NeuroNames:39] synonym: "cortex cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_cortex] synonym: "cortex of cerebral hemisphere" EXACT [BTO:0000233, FMA:61830] synonym: "cortical plate (areas)" RELATED [NeuroNames:39] synonym: "cortical plate (CTXpl)" RELATED [NeuroNames:39] synonym: "pallium of the brain" RELATED [BTO:0000233] xref: BAMS:C xref: BAMS:Cerebral_cortex xref: BAMS:CTX xref: BAMS:Cx xref: BIRNLEX:1494 xref: BM:Tel-Cx xref: BTO:0000233 xref: CALOHA:TS-0091 xref: DHBA:10159 xref: EFO:0000328 xref: EHDAA2:0000234 xref: EHDAA:5464 xref: EMAPA:17544 xref: EV:0100166 xref: FMA:61830 xref: GAID:629 xref: HBA:4008 xref: MA:0000185 xref: MAT:0000108 xref: MBA:688 xref: MESH:D002540 xref: MIAA:0000108 xref: NCIT:C12443 xref: neuronames:39 {source="BIRNLEX:1494"} xref: PBA:128011354 xref: SCTID:362880003 xref: UMLS:C0007776 {source="ncithesaurus:Cortex", source="BIRNLEX:1494"} xref: VHOG:0000722 xref: Wikipedia:Cerebral_cortex is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer relationship: part_of UBERON:0000203 {source="GO", source="ISBN:0471888893"} ! pallium relationship: part_of UBERON:0005401 {source="FMA", source="MA"} ! cerebral hemisphere gray matter relationship: present_in_taxon NCBITaxon:117569 relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "We follow NIFSTD in defining cerebral cortex and including both neocortex and hippocampal formation (DG+hippocampus)." xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg" xsd:anyURI property_value: external_definition "The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2-4 mm (0.08-0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted][Wikipedia:Cerebral_cortex]." xsd:string {source="Wikipedia:Cerebral_cortex"} property_value: homology_notes "Migration of neurons from the basal or striatal portions of the anterior part of the neural tube occurs to varying degrees in different vertebrate classes, but a true cerebral cortex is generally acknowledged to have made its first appearance in reptiles. The definition can be unambiguous, since 'cortex' simply implies the existence of a surface neuronal layer with an overlying 'zonal lamina' or 'molecular' layer containing dendrites and axons, which is separated from the underlying basal 'matrix' by white matter. Although reptilian cerebral cortex does indeed fulfill these conditions in certain locations, the separation from striatal structures is often indistinct, so that it may even be argued that some primitive dipnoans possess a pallium or cortex. Nevertheless, an extensive laminated layer separated by underlying white matter is well represented only in reptiles and mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000722", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20437.x Kruger L, Experimental analyses of the reptilian nervous system. Annals of the New York Academy of Sciences (1969)", source="http://bgee.unil.ch/"} property_value: taxon_notes "hagfishes have independently evolved a highly laminated cerebral cortex, comparable in many ways to the cerebral cortex of mammals [http://icb.oxfordjournals.org/content/42/4/743]" xsd:string [Term] id: UBERON:0000957 name: lamina def: "Any thin layer or plate." [Wikipedia:Lamina_of_the_vertebral_arch] subset: non_informative subset: uberon_slim subset: upper_level synonym: "laminar tissue" EXACT [] xref: Wikipedia:Lamina_of_the_vertebral_arch is_a: UBERON:0000479 ! tissue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/80/Laminaarcusvertebrae.png" xsd:anyURI property_value: editor_note "TODO - merge with cell layer?" xsd:string property_value: has_relational_adjective "laminar" xsd:string [Term] id: UBERON:0000958 name: medulla of organ def: "Middle part of an organ, surrounded by the cortex." [http://orcid.org/0000-0002-6601-2165] subset: upper_level synonym: "medulla" EXACT [FMA:61108] xref: FMA:61108 xref: galen:Medulla is_a: UBERON:0000471 ! compound organ component property_value: curator_notes "this class is used in a very general sense" xsd:string property_value: has_relational_adjective "medullary" xsd:string [Term] id: UBERON:0000959 name: optic chiasma def: "A decussation of the diencephalon where the fibers of the optic nerve cross." [http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0009770, Wikipedia:Optic_chiasm] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chiasma" RELATED OMO:0003011 [NeuroNames:459] synonym: "chiasma nervorum opticorum" RELATED OMO:0003011 [NeuroNames:459] synonym: "chiasma opticum" EXACT OMO:0003011 [Wikipedia:Optic_chiasm] synonym: "decussation of optic nerve fibers" EXACT [FMA:62045] synonym: "optic chiasm" EXACT [Wikipedia:Optic_chiasm] synonym: "optic chiasm (Rufus of Ephesus)" RELATED [NeuroNames:459] xref: AAO:0010622 xref: BAMS:DC xref: BAMS:OC xref: BAMS:och xref: BAMS:ox xref: BIRNLEX:1416 xref: BM:Tel-OCX xref: DHBA:10644 xref: DMBA:17783 xref: EHDAA2:0001302 xref: EHDAA:10227 xref: EMAPA:17603 xref: FMA:62045 xref: GAID:832 xref: HBA:9310 xref: MA:0001098 xref: MBA:117 xref: MESH:D009897 xref: NCIT:C90609 xref: neuronames:459 {source="BIRNLEX:1416"} xref: SCTID:244453006 xref: TAO:0000556 xref: UMLS:C0029126 {source="BIRNLEX:1416", source="ncithesaurus:Optic_Chiasm"} xref: VHOG:0000190 xref: Wikipedia:Optic_chiasm xref: XAO:0004071 xref: ZFA:0000556 is_a: UBERON:0007425 ! decussation of diencephalon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/1543%2CVisalius%27OpticChiasma.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "The point at which fibers of the optic nerves cross.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010622", ontology="AAO", source="AAO:DSM"} property_value: homology_notes "The chiasm has been studied in great detail in some animals, while in others relatively little or nothing is known. Although there are some gross architectural features that are conserved within some animals, such as birds and fish, the general picture is one of diversity. This review will attempt to consider the key features of such diversity of chiasmatic organisation in vertebrates and the mechanisms that sculpt them from the limited literature that is available. However, as so much research has been undertaken on the structure and development of the chiasm in laboratory animals, any review must consider the information that has been gleaned from them and hope that future studies will determine whether the features revealed in these animals, and the underlying mechanisms that generate them, have a common vertebrate plan.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000190", ontology="VHOG", source="DOI:10.1016/j.preteyeres.2005.04.005 Jeffery G, Erskine L, Variations in the architecture and development of the vertebrate optic chiasm. Progress in retinal and eye research (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000960 name: obsolete pharyngeal nerve def: "OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]." [Wikipedia:Pharyngeal_nerve] subset: uberon_slim xref: Wikipedia:Pharyngeal_nerve property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray780.png" xsd:anyURI is_obsolete: true consider: FBbt:00004021 consider: FMA:77524 consider: WBbt:0005441 [Term] id: UBERON:0000961 name: thoracic ganglion def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [Wikipedia:Thoracic_ganglion] subset: human_reference_atlas subset: uberon_slim synonym: "ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion thoracicum splanchnicum" EXACT OMO:0003011 [FMA:6471, FMA:TA] synonym: "thoracic paravertebral ganglion" EXACT [MA:0001159] synonym: "thoracic splanchnic ganglion" EXACT [] synonym: "thoracic sympathetic ganglion" EXACT [] synonym: "thorax ganglion" EXACT [OBOL:automatic] xref: BTO:0001831 xref: EHDAA:4664 xref: EMAPA:17158 xref: FMA:6471 xref: MA:0001159 xref: NCIT:C52829 xref: RETIRED_EHDAA2:0002012 xref: SCTID:181102004 xref: UMLS:C0229010 {source="ncithesaurus:Thoracic_Ganglion"} xref: VHOG:0000515 xref: Wikipedia:Thoracic_ganglion is_a: UBERON:0001807 ! paravertebral ganglion relationship: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray849.png" xsd:anyURI [Term] id: UBERON:0000962 name: nerve of cervical vertebra def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerves] comment: Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] subset: human_reference_atlas subset: uberon_slim synonym: "cervical nerve" EXACT [FMA:5859] synonym: "cervical nerve tree" EXACT [] synonym: "cervical spinal nerve" EXACT [] synonym: "nervus cervicalis" EXACT OMO:0003011 [FMA:5859, FMA:TA] xref: BAMS:cern xref: FMA:5859 xref: NCIT:C32299 xref: neuronames:2351 xref: NLXANAT:20090207 xref: SCTID:360497008 xref: UMLS:C0228815 {source="ncithesaurus:Cervical_Nerve"} xref: Wikipedia:Cervical_nerves is_a: UBERON:0001780 ! spinal nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png" xsd:anyURI [Term] id: UBERON:0000963 name: head sensillum xref: FBbt:00004114 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0000033 ! head property_value: editor_note "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0000964 name: cornea def: "The transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure." [ISBN:0-683-40008-8, MESH:A09.371.060.217, MP:0001312] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cornea of camera-type eye" EXACT [GO:0061303] synonym: "corneas" RELATED OMO:0003004 [ZFA:0000640] synonym: "tunica cornea" RELATED [] xref: AAO:0010344 xref: BTO:0000286 xref: CALOHA:TS-0171 xref: EFO:0000377 xref: EHDAA2:0000316 xref: EHDAA:10199 xref: EMAPA:17161 xref: EV:0100341 xref: FMA:58238 xref: GAID:892 xref: MA:0000266 xref: MESH:D003315 xref: NCIT:C12342 xref: SCTID:181162001 xref: TAO:0000640 xref: UMLS:C0010031 {source="ncithesaurus:Cornea"} xref: VHOG:0000164 xref: Wikipedia:Cornea xref: XAO:0000180 xref: ZFA:0000640 is_a: UBERON:0010000 ! multicellular anatomical structure is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0004348 {evidence="definitional"} ! optic eminence relationship: develops_from UBERON:0005427 ! corneal primordium relationship: part_of UBERON:0001801 {source="MA"} ! anterior segment of eyeball relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region relationship: part_of UBERON:0012430 {source="FMA-isa"} ! tunica fibrosa of eyeball relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: has_relational_adjective "corneal" xsd:string property_value: taxon_notes "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals. In fish, and aquatic vertebrates in general, the cornea plays no role in focusing light, since it has virtually the same refractive index as water" xsd:string [Term] id: UBERON:0000965 name: lens of camera-type eye def: "A transparent and refractive lens located posterior to the iris. The lens of camera-type eye refracts light to be focused on the retina." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lens_(anatomy)] comment: The lens is avascular and nourished by diffusion from the aqueous and vitreous humors. subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "camera-type eye lens" EXACT [GO:0002088] synonym: "crystalline lens" RELATED [BTO:0000723, PMID:36055924] synonym: "eye lens" EXACT SENSU [] synonym: "lens" EXACT SENSU [] synonym: "lens crystallina" EXACT [Wikipedia:Lens_(anatomy)] synonym: "lenses" RELATED OMO:0003004 [ZFA:0000035] synonym: "ocular lens" RELATED [BTO:0000723] xref: AAO:0010348 xref: BTO:0000723 xref: CALOHA:TS-0545 xref: EHDAA:9057 xref: EMAPA:17838 xref: EV:0100343 xref: FMA:58241 xref: MA:0000275 xref: MAT:0000141 xref: MESH:D007908 xref: MIAA:0000141 xref: NCIT:C12743 xref: RETIRED_EHDAA2:0000975 xref: SCTID:181169005 xref: TAO:0000035 xref: UMLS:C0023317 {source="ncithesaurus:Crystalline_Lens"} xref: VHOG:0000169 xref: Wikipedia:Lens_(anatomy) xref: XAO:0000008 xref: ZFA:0000035 is_a: UBERON:0005389 ! transparent eye structure relationship: develops_from UBERON:0005426 ! lens vesicle relationship: mutually_spatially_disjoint_with UBERON:0002049 ! vasculature relationship: part_of UBERON:0001801 ! anterior segment of eyeball relationship: present_in_taxon NCBITaxon:9606 property_value: homology_notes "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000169", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} property_value: taxon_notes "This class excludes compound eye corneal lenses." xsd:string [Term] id: UBERON:0000966 name: retina def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator] comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "inner layer of eyeball" EXACT [] synonym: "Netzhaut" RELATED [BTO:0001175] synonym: "retina of camera-type eye" EXACT [GO:0060041] synonym: "retinas" RELATED OMO:0003004 [ZFA:0000152] synonym: "tunica interna of eyeball" EXACT [] xref: AAO:0010352 xref: BAMS:R xref: BIRNLEX:1153 xref: BTO:0001175 xref: CALOHA:TS-0865 xref: EFO:0000832 xref: EHDAA2:0001627 xref: EHDAA:4757 xref: EMAPA:17168 xref: EV:0100348 xref: FMA:58301 xref: GAID:755 xref: MA:0000276 xref: MAT:0000142 xref: MBA:304325711 xref: MESH:D012160 xref: MIAA:0000142 xref: NCIT:C12343 xref: neuronames:1862 xref: NIFSTD_RETIRED:birnlex_1156 xref: SCTID:181171005 xref: TAO:0000152 xref: UMLS:C0035298 {source="BIRNLEX:1153", source="ncithesaurus:Retina"} xref: UMLS:C1278894 {source="BIRNLEX:1153"} xref: VHOG:0000229 xref: Wikipedia:Retina xref: XAO:0000009 xref: ZFA:0000152 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005388 ! photoreceptor array relationship: develops_from UBERON:0003072 {source="EHDAA2"} ! optic cup relationship: never_in_taxon NCBITaxon:6656 relationship: part_of UBERON:0001802 ! posterior segment of eyeball relationship: part_of UBERON:0019207 ! chorioretinal region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png" xsd:anyURI property_value: external_definition "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000152", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "retinal" xsd:string property_value: homology_notes "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000229", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000967 name: obsolete adult thoracic sensillum synonym: "arthropod sensillum of thorax" EXACT [OBOL:automatic] synonym: "sensillum of thorax" EXACT [OBOL:automatic] synonym: "thoracic sensillum" EXACT [] synonym: "thorax arthropod sensillum" EXACT [OBOL:automatic] synonym: "thorax sensillum" EXACT [OBOL:automatic] is_obsolete: true consider: FBbt:00004245 consider: MAT:0000205 consider: MIAA:0000205 [Term] id: UBERON:0000968 name: obsolete adult abdominal sensillum synonym: "abdomen arthropod sensillum" EXACT [OBOL:automatic] synonym: "abdomen sensillum" EXACT [OBOL:automatic] synonym: "abdominal sensillum" EXACT [] synonym: "arthropod sensillum of abdomen" EXACT [OBOL:automatic] synonym: "sensillum of abdomen" EXACT [OBOL:automatic] is_obsolete: true consider: FBbt:00004461 consider: MAT:0000206 consider: MIAA:0000206 [Term] id: UBERON:0000969 name: obsolete joint connecting hardened body parts is_obsolete: true [Term] id: UBERON:0000970 name: eye def: "An organ that detects light." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: functional_classification subset: human_reference_atlas subset: major_organ subset: organ_slim subset: uberon_slim synonym: "light-detecting organ" RELATED [] synonym: "visual apparatus" RELATED [EV:0100336] xref: BILA:0000017 xref: BTO:0000439 xref: CALOHA:TS-0309 xref: EFO:0000827 xref: EV:0100336 xref: FBbt:00005162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:69 xref: MAT:0000140 xref: MESH:D005123 xref: MIAA:0000140 xref: Wikipedia:Eye is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002104 ! visual system relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each)" xsd:string property_value: has_relational_adjective "ocular" xsd:string property_value: has_relational_adjective "optic" xsd:string property_value: structure_notes "Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva," xsd:string [Term] id: UBERON:0000971 name: ommatidium def: "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells." [PMID:21062451] subset: uberon_slim synonym: "omatidia" RELATED OMO:0003004 [] synonym: "omatidium" EXACT [] xref: BTO:0001922 xref: FBbt:00004510 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000666 xref: MAT:0000143 xref: MIAA:0000143 xref: Wikipedia:Ommatidium is_a: UBERON:0000970 {source="PMID:21062451"} ! eye is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0000018 ! compound eye property_value: has_relational_adjective "ommatidial" xsd:string [Term] id: UBERON:0000972 name: antenna def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, ISBN:3110148986, Wikipedia:Antenna_(biology)] subset: efo_slim subset: uberon_slim synonym: "feeler" RELATED [BTO:0000074] xref: AEO:0000198 xref: BTO:0000074 xref: EFO:0000874 xref: FBbt:00004511 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000101 xref: MAT:0000086 xref: MIAA:0000086 xref: TGMA:0000007 xref: Wikipedia:Antenna_(biology) is_a: UBERON:0000026 {source="FBbt"} ! appendage is_a: UBERON:0015212 ! lateral structure relationship: never_in_taxon NCBITaxon:6843 relationship: part_of UBERON:0000033 ! head property_value: editor_note "this term should be ceded to the arthropod anatomy ontology" xsd:string property_value: has_relational_adjective "antennal" xsd:string property_value: has_relational_adjective "antenno" xsd:string [Term] id: UBERON:0000973 name: obsolete labrum is_obsolete: true [Term] id: UBERON:0000974 name: neck def: "An organism subdivision that extends from the head to the pectoral girdle, encompassing the cervical vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "collum" RELATED OMO:0003011 [Wikipedia:Neck] synonym: "neck (volume)" RELATED [FMA:7155] xref: AEO:0000108 xref: BTO:0000420 xref: CALOHA:TS-2045 xref: EFO:0000967 xref: EHDAA2:0003108 xref: EMAPA:35587 xref: FMA:7155 xref: GAID:86 xref: galen:Neck xref: MA:0000024 xref: MAT:0000297 xref: MESH:D009333 xref: MIAA:0000297 xref: NCIT:C13063 xref: SCTID:302550007 xref: UMLS:C0027530 {source="ncithesaurus:Neck"} xref: Wikipedia:Neck is_a: UBERON:0000475 ! organism subdivision relationship: dubious_for_taxon NCBITaxon:32443 {source="ISBN:9780674021839"} relationship: part_of UBERON:0000153 ! anterior region of body property_value: curator_notes "true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck." xsd:string property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/Female_neck.jpg" xsd:anyURI property_value: has_relational_adjective "cervical" xsd:string [Term] id: UBERON:0000975 name: sternum def: "A midventral endochondral skeletal element which represents the origin site of the pectoral muscles[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/67, PHENOSCAPE:ad] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "breastbone" RELATED [BTO:0001302] synonym: "vertebrate sternum" EXACT [] xref: AAO:0000765 xref: BTO:0001302 xref: CALOHA:TS-0972 xref: EHDAA2:0001914 xref: EHDAA:9561 xref: EMAPA:18344 xref: FMA:7485 xref: GAID:246 xref: galen:Sternum xref: MA:0001331 xref: MESH:D013249 xref: NCIT:C12793 xref: SCTID:302522007 xref: UMLS:C0038293 {source="ncithesaurus:Sternum"} xref: VHOG:0000856 xref: Wikipedia:Sternum is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0010363 {source="ISBN:0073040584"} ! endochondral element relationship: never_in_taxon NCBITaxon:8570 {source="Wikipedia"} relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of postzonal element (AAO:0000938)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000765", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg" xsd:anyURI property_value: development_notes "While its developmental origins are similar to the ribs (from the myospetum and septum of the trunk region), it is often associated with the pectoral skeleton, due to both function and physical connections (i.e. the coracoid of archosaurs). It may be a single element or a series of smaller structure (sternebrae). Based on Kardong 2012. [PHENOSCAPE:ad]." xsd:string {source="WP"} property_value: editor_note "in EMAPA and EHDAA2 this is part of the skeleton of pectoral girdle; the classic def of pectoral girdle (see WP) excludes the rib cage and sternum" xsd:string property_value: external_definition "Single element that constitutes the postzonal area of the pectoral girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000765", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "sternal" xsd:string property_value: homology_notes "Fishes lack a sternum. (...) A sternum is absent in the first fossil tetrapods, but it is present in modern amphibians. (...) Thus, a sternum occurs in some modern amphibians, birds, mammals and archosaurs. However, its absence in the common ancestors to these groups means that it has arisen independently several times within the field of the midventral connective tissue.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000856", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.294", source="http://bgee.unil.ch/"} property_value: taxon_notes "in birds, either ratite (no keel or carina) or carinate (keel and carina present)" xsd:string property_value: taxon_notes "It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life" xsd:string [Term] id: UBERON:0000976 name: humerus def: "Paired endochondral long bone that extends between the pectoral girdle and the skeletal parts of the forelimb. [PHENOSCAPE:mah]." [AAO:0000679, https://github.com/obophenotype/uberon/issues/106, PHENOSCAPE:mah] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "humeri" EXACT OMO:0003004 [PHENOSCAPE:ad] synonym: "humerus bone" EXACT [] synonym: "mesomere 1 of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] synonym: "proximal metapterygial mesomere of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] synonym: "proximal metapterygial mesomere of pectoral fin" RELATED HOMOLOGY [ISBN:0226313409] xref: AAO:0000679 xref: CALOHA:TS-2202 xref: EFO:0001398 xref: EMAPA:19106 xref: FMA:13303 xref: GAID:183 xref: galen:Humerus xref: MA:0001356 xref: MESH:D006811 xref: NCIT:C12731 xref: SCTID:181923006 xref: UMLS:C0020164 {source="ncithesaurus:Humerus"} xref: VHOG:0001158 xref: Wikipedia:Humerus xref: XAO:0003210 is_a: UBERON:0003461 ! shoulder bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone is_a: UBERON:0015053 ! humerus endochondral element relationship: develops_from UBERON:0006245 {evidence="definitional"} ! humerus cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg" xsd:anyURI property_value: external_definition "Paired, elongate, cylindrical bones of endochondral origin that extend from the pectoral girdle to the elbows.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000679", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "humeral" xsd:string property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001158", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000977 name: pleura def: "The invaginated serous membrane that surrounds the lungs (the visceral portion) and lines the walls of the pleural cavity (parietal portion)." [https://github.com/obophenotype/uberon/issues/1231, ISBN:0-683-40008-8, MP:0010820, UBERON:cjm, Wikipedia:Pulmonary_pleurae] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "pleura" RELATED [] synonym: "pleural tissue" RELATED [BTO:0001791, NCIT:C12469] synonym: "wall of pleural sac" EXACT [] xref: BTO:0001791 xref: CALOHA:TS-2081 xref: EFO:0001980 xref: EV:0100044 xref: FMA:9583 xref: GAID:360 xref: MA:0000433 xref: MESH:D010994 xref: NCIT:C12469 xref: SCTID:181609007 xref: UMLS:C0032225 {source="ncithesaurus:Pleural_Tissue"} xref: VHOG:0000394 xref: Wikipedia:Pleura is_a: UBERON:0000042 ! serous membrane relationship: develops_from UBERON:0003081 ! lateral plate mesoderm relationship: part_of UBERON:0009778 {source="https://github.com/obophenotype/uberon/issues/86"} ! pleural sac relationship: present_in_taxon NCBITaxon:8782 {source="ISBN:978-0030223693", source="https://orcid.org/0000-0003-3308-6245"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png" xsd:anyURI property_value: external_definition "The serous membrane that covers the lungs and lines the pleural cavity. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.264][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000394", ontology="VHOG", source="ISBN:0124020607", source="http://bgee.unil.ch/"} property_value: external_ontology_notes "In MA, is_a cavity lining (which we equate to parietal). In FMA, is_a (viscous) serous membrane (which includes mesothelium plus connective tissue). Note the MA structure should probably be associated with the mesothelium of pleura in FMA. JB/EHDAA2 argues the term 'pleura' is best used for the mesothelial lining (thus excluding connective tissue). See https://github.com/obophenotype/uberon/issues/86" xsd:string property_value: has_relational_adjective "pleural" xsd:string [Term] id: UBERON:0000978 name: leg def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb] comment: we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "lower extremity" RELATED [MESH:A01.378.610] synonym: "tetrapod leg" EXACT [] xref: BTO:0000721 xref: CALOHA:TS-2206 xref: EFO:0001411 xref: EHDAA2:0000972 xref: EHDAA:5151 xref: EHDAA:6176 xref: EHDAA:8289 xref: EMAPA:17489 xref: GAID:49 xref: MA:0000047 xref: MESH:D035002 xref: VHOG:0000345 xref: Wikipedia:Leg#Limb is_a: UBERON:0006058 ! multi-limb segment region is_a: UBERON:0008784 ! lower limb segment relationship: present_in_taxon NCBITaxon:9606 property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000345", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} property_value: terminology_notes "The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For" xsd:string {source="3"} [Term] id: UBERON:0000979 name: tibia def: "The major preaxial endochondral bone in the posterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "shankbone" EXACT [Wikipedia:Tibia] synonym: "shinbone" EXACT [Wikipedia:Tibia] xref: AAO:0000890 xref: BTO:0001252 xref: CALOHA:TS-1048 xref: EFO:0003054 xref: EMAPA:19142 xref: FMA:24476 xref: GAID:204 xref: galen:Tibia xref: MA:0001361 xref: MESH:D013977 xref: NCIT:C12800 xref: SCTID:182061009 xref: UMLS:C0040184 {source="ncithesaurus:Tibia"} xref: Wikipedia:Tibia is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone is_a: UBERON:0015004 ! tibia endochondral element relationship: develops_from UBERON:0010849 ! tibia cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray260.png" xsd:anyURI property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000890", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0000980 name: trochanter def: "A bony prominence near the extremity of the femur that normally serves as attachment points for hip and thigh muscles[MP,modified]." [MP:0004627] subset: pheno_slim subset: uberon_slim synonym: "femoral trochanter" EXACT [AAO:0000897] synonym: "trochanter of femur" EXACT [] xref: AAO:0000897 xref: FMA:82513 xref: MA:0002821 xref: NCIT:C33814 xref: SCTID:182047004 xref: UMLS:C0162370 {source="ncithesaurus:Trochanter"} xref: Wikipedia:Trochanter is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 {source="MA"} ! femur property_value: external_definition "Process on the ventral surface of the shaft of the femur.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000897", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "there are two in human (greater and lesser trochanters) and three in many other mammalian species (greater, lesser and third)" xsd:string {source="MP"} [Term] id: UBERON:0000981 name: femur def: "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium skeleton.[VSAO, modified]." [VSAO:0000186, Wikipedia:Femur] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "femoral bone" RELATED [BTO:0001284] synonym: "mesomere 1 of pevlic appendage" RELATED HOMOLOGY [ISBN:0226313409] synonym: "os femorale" RELATED OMO:0003011 [BTO:0001284] synonym: "os femoris" RELATED OMO:0003011 [BTO:0001284] synonym: "os longissimum" RELATED OMO:0003011 [Wikipedia:Femur] synonym: "proximal metapterygial mesomere of pelvic appendage" RELATED HOMOLOGY [ISBN:0226313409] synonym: "proximal metapterygial mesomere of pelvic fin" RELATED HOMOLOGY [ISBN:0226313409] synonym: "thigh bone" EXACT [] xref: AAO:0000887 xref: AAO:0000889 xref: BTO:0001284 xref: CALOHA:TS-0322 xref: EFO:0001396 xref: EMAPA:19143 xref: FMA:9611 xref: GAID:199 xref: galen:Femur xref: MA:0001359 xref: MESH:D005269 xref: NCIT:C12717 xref: SCTID:182046008 xref: UMLS:C0015811 {source="ncithesaurus:Femur"} xref: VHOG:0001159 xref: VSAO:0000186 xref: Wikipedia:Femur xref: XAO:0003214 is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 {source="MA"} ! bone of hip region is_a: UBERON:0015052 ! femur endochondral element relationship: develops_from UBERON:0010129 {evidence="definitional"} ! femur cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray252.png" xsd:anyURI property_value: external_definition "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000186", ontology="VSAO", source="VSAO:NI"} property_value: external_definition "Paired, elongate, cylindrical bones of endochondral origin that form the thighs, extending from the pelvic girdles to the knees.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000889", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "femoral" xsd:string property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001159", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000982 name: skeletal joint def: "Anatomical structure that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000101, Wikipedia:Joint] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "articular joint" RELATED [BTO:0001686] synonym: "articulation" BROAD [VSAO:0000101] synonym: "joint" BROAD [FMA:7490, VSAO:0000101] synonym: "joints" RELATED OMO:0003004 [ZFA:0001596] xref: AEO:0000182 xref: BTO:0001686 xref: CALOHA:TS-2023 xref: EFO:0000948 xref: EMAPA:35456 xref: FMA:7490 xref: GAID:102 xref: galen:Joint xref: MA:0000319 xref: MAT:0000188 xref: MESH:D007596 xref: MIAA:0000188 xref: NCIT:C13044 xref: RETIRED_EHDAA2:0003182 xref: SCTID:302536002 xref: TAO:0000367 xref: UMLS:C0022417 {source="ncithesaurus:Joint"} xref: VHOG:0001276 xref: VSAO:0000101 xref: Wikipedia:Joint xref: XAO:0000171 xref: ZFA:0001596 is_a: UBERON:0004905 ! articulation property_value: external_definition "Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000101", ontology="VSAO", source="PSPUB:0000170"} property_value: external_definition "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000367", ontology="TAO", source="TAO:pem"} [Term] id: UBERON:0000983 name: metatarsus region def: "A metapodium region that is part of a pes." [OBOL:automatic] subset: uberon_slim synonym: "hind metapodium" EXACT [AAO:0000221, http://en.wiktionary.org/wiki/metapodial, MA:th] synonym: "hindlimb cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "hindlimb equine cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "metatarsal part of foot" EXACT [FMA:24997] synonym: "metatarsal region" EXACT [FMA:24997] synonym: "metatarsus" RELATED [MA:0000049] synonym: "regio metatarsalis" EXACT OMO:0003011 [FMA:24997, FMA:TA] xref: CALOHA:TS-2221 xref: FMA:24997 xref: MA:0000049 xref: SCTID:280711000 xref: SCTID:370639003 is_a: UBERON:0008784 ! lower limb segment is_a: UBERON:0009877 ! metapodium region relationship: part_of UBERON:0012142 {source="PHENOSCAPE:ni"} ! pedal digitopodium region property_value: external_ontology_notes "mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton" xsd:string [Term] id: UBERON:0000984 name: imaginal disc-derived wing def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg] subset: uberon_slim synonym: "adult mesothoracic wing" RELATED [] synonym: "adult metathoracic wing" RELATED [] synonym: "thoracic wing" RELATED [] synonym: "thorax wing" RELATED [OBOL:automatic] synonym: "wing" BROAD SENSU [FBbt:00004729] synonym: "wing of thorax" RELATED [OBOL:automatic] xref: FBbt:00004729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0001089 xref: TGMA:0000196 is_a: UBERON:0000023 ! wing relationship: develops_from UBERON:0000939 ! imaginal disc property_value: editor_note "TODO - review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma" xsd:string [Term] id: UBERON:0000985 name: axillary vein def: "Vein that drains the axilla." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: uberon_slim synonym: "subcostal vein" RELATED [] synonym: "vena axillaris" EXACT OMO:0003011 [Wikipedia:Axillary_vein] xref: EMAPA:18758 xref: FMA:13329 xref: GAID:527 xref: galen:AxillaryVein xref: MA:0002084 xref: MESH:D001367 xref: NCIT:C32171 xref: SCTID:181389002 xref: UMLS:C0004456 {source="ncithesaurus:Axillary_Vein"} xref: Wikipedia:Axillary_vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001467 ! shoulder relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png" xsd:anyURI property_value: taxon_notes "In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery" xsd:string {source="WP"} [Term] id: UBERON:0000987 name: haltere def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, ISBN:3110148986, Wikipedia:Haltere] subset: efo_slim subset: uberon_slim synonym: "balancer organ" RELATED [] xref: EFO:0000886 xref: FBbt:00004783 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000203 xref: MIAA:0000203 xref: Wikipedia:Haltere is_a: UBERON:0000026 {source="FBbt"} ! appendage relationship: develops_from UBERON:0000939 ! imaginal disc relationship: part_of UBERON:0000914 ! organismal segment property_value: editor_note "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0000988 name: pons def: "The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum." [VHOG:0001176] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "pons cerebri" RELATED OMO:0003011 [NeuroNames:547] synonym: "pons of Varolius" EXACT [] synonym: "pons Varolii" EXACT [ncithesaurus:Pons_Varolii] xref: BAMS:PONS xref: BAMS:Pons xref: BIRNLEX:733 xref: BM:Pons xref: BTO:0001101 xref: CALOHA:TS-0813 xref: DHBA:10661 xref: EFO:0001394 xref: EHDAA2:0004394 xref: EMAPA:17563 xref: EV:0100253 xref: FMA:67943 xref: GAID:578 xref: HBA:9131 xref: MA:0000204 xref: MAT:0000115 xref: MBA:771 xref: MESH:D011149 xref: MIAA:0000115 xref: NCIT:C12511 xref: neuronames:547 {source="BIRNLEX:733"} xref: SCTID:279103004 xref: UMLS:C0032639 {source="BIRNLEX:733", source="ncithesaurus:Pons_Varolii"} xref: UMLS:C1280999 {source="BIRNLEX:733"} xref: VHOG:0001176 xref: Wikipedia:Pons is_a: UBERON:0002616 ! regional part of brain relationship: dubious_for_taxon NCBITaxon:7955 relationship: part_of UBERON:0001895 {source="neuronames"} ! metencephalon relationship: part_of UBERON:0002298 ! brainstem relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png" xsd:anyURI property_value: editor_note "The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved" xsd:string property_value: external_definition "The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001176", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pons"} property_value: homology_notes "During the embryonic development of birds and mammals, neuroblasts migrate from the cerebellum into the ventral part of the rhombencephalon and differentiate into pontine and other nuclei, which relay information from between the cerebrum and cerebellum, and a conspicuous band of transverse fibers. This region is known as the pons. A pons does not differentiate in reptiles and anamniotes (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001176", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.474", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000989 name: penis def: "An intromittent organ in certain biologically male organisms. In placental mammals, this also serves as the organ of urination." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MP:0005187, Wikipedia:Penis] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "penes" RELATED OMO:0003004 [] synonym: "phallus" RELATED [] xref: BTO:0000405 xref: CALOHA:TS-0758 xref: EFO:0000987 xref: EHDAA2:0001433 xref: EHDAA:9380 xref: EMAPA:18682 xref: EMAPA_RETIRED:18996 xref: EV:0100107 xref: FMA:9707 xref: GAID:389 xref: galen:Penis xref: MA:0000408 xref: MAT:0000186 xref: MESH:D010413 xref: MIAA:0000186 xref: NCIT:C12409 xref: SCTID:265793009 xref: UMLS:C0030851 {source="ncithesaurus:Penis"} xref: VHOG:0000727 xref: Wikipedia:Penis is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold relationship: develops_from UBERON:0005876 {source="EHDAA2"} ! undifferentiated genital tubercle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/87/Labelled_flaccid_penis.jpg" xsd:anyURI property_value: has_relational_adjective "penile" xsd:string property_value: has_relational_adjective "phallic" xsd:string property_value: taxon_notes "Most male birds (e.g., roosters and turkeys) have a cloaca (also present on the female), but not a penis. Among bird species with a penis are paleognathes (tinamous and ratites), Anatidae (ducks, geese and swans), and a very few other species (such as flamingoes). A bird penis is different in structure from mammal penises, being an erectile expansion of the cloacal wall and being erected by lymph, not blood. It is usually partially feathered and in some species features spines and brush-like filaments, and in flaccid state curls up inside the cloaca" xsd:string {source="WP"} [Term] id: UBERON:0000990 name: reproductive system def: "Anatomical system that has as its parts the organs concerned with reproduction." [Wikipedia:Reproductive_system] subset: efo_slim subset: functional_classification subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "animal reproductive system" RELATED [BTO:0000081] synonym: "genital system" NARROW [] synonym: "genital tract" RELATED [] synonym: "genitalia" NARROW OMO:0003004 [] synonym: "Geschlechtsorgan" RELATED [BTO:0000081] synonym: "organa genitalia" RELATED [BTO:0000081] synonym: "reproductive tissue" RELATED [BTO:0000081] synonym: "reproductive tract" RELATED [] synonym: "systemata genitalia" RELATED OMO:0003011 [Wikipedia:Reproductive_system] xref: AAO:0010258 xref: BILA:0000103 xref: BTO:0000081 xref: CALOHA:TS-1318 xref: EFO:0000809 xref: EHDAA2:0001603 xref: EHDAA:5923 xref: EMAPA:17381 xref: EV:0100100 xref: FBbt:00004857 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7160 xref: GAID:363 xref: HAO:0000374 xref: HAO:0000895 xref: MA:0000326 xref: MESH:D005835 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000305 xref: NCIT:C12841 xref: SCTID:278875001 xref: TAO:0000632 xref: UMLS:C1261210 {source="ncithesaurus:Reproductive_System"} xref: VHOG:0000182 xref: WBbt:0005747 xref: Wikipedia:Reproductive_system xref: XAO:0000142 xref: ZFA:0000632 is_a: UBERON:0000467 ! anatomical system relationship: fma_set_term FMA:75572 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-06-10T18:22:34Z" xsd:dateTime property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Penis.svg" xsd:anyURI property_value: editor_note "consider splitting genitalia from reproductive system" xsd:string property_value: external_definition "Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010258", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000182", ontology="VHOG", source="PMID:21672850 Extavour CGM, Gray anatomy: phylogenetic patterns of somatic gonad structures and reproductive strategies across Bilateria. Integrative and Comparative Biology (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000991 name: gonad def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator] subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "gonada" EXACT [] synonym: "gonads" RELATED OMO:0003004 [ZFA:0000413] xref: AAO:0000213 xref: BILA:0000123 xref: BSA:0000079 xref: BTO:0000534 xref: EMAPA:17383 xref: FMA:18250 xref: GAID:368 xref: HAO:0000379 xref: MA:0002420 xref: MESH:D006066 xref: NCIT:C12725 xref: SCTID:304623008 xref: TAO:0000413 xref: UMLS:C0018067 {source="ncithesaurus:Gonad"} xref: VHOG:0000397 xref: WBbt:0005175 xref: Wikipedia:Gonad xref: XAO:0003146 xref: ZFA:0000413 is_a: UBERON:0003133 ! reproductive organ relationship: develops_from UBERON:0005564 ! gonad primordium property_value: external_definition "Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000213", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000413", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "FMA xref is a 'general anatomical term'" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "gonadal" xsd:string property_value: homology_notes "Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000397", ontology="VHOG", source="DOI:10.1146/annurev.cellbio.042308.13350 DeFalco T, Capel B, Gonad morphogenesis in vertebrates: divergent means to a convergent end. Annual review of cell and developmental biology (2009)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000992 name: ovary def: "The gonad of a female organism which contains germ cells." [ISBN:0-683-40008-8, MP:0001126, Wikipedia:Ovary] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "animal ovary" EXACT [EFO:0000973] synonym: "female gonad" EXACT [] synonym: "female organism genitalia gonad" EXACT [OBOL:automatic] synonym: "female organism genitalia gonada" EXACT [OBOL:automatic] synonym: "female organism reproductive system gonad" EXACT [OBOL:automatic] synonym: "female organism reproductive system gonada" EXACT [OBOL:automatic] synonym: "female reproductive system gonad" EXACT [OBOL:automatic] synonym: "female reproductive system gonada" EXACT [OBOL:automatic] synonym: "genitalia of female organism gonad" EXACT [OBOL:automatic] synonym: "genitalia of female organism gonada" EXACT [OBOL:automatic] synonym: "gonad of female organism genitalia" EXACT [OBOL:automatic] synonym: "gonad of female organism reproductive system" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "gonad of genitalia of female organism" EXACT [OBOL:automatic] synonym: "gonad of reproductive system of female organism" EXACT [OBOL:automatic] synonym: "gonada of female organism genitalia" EXACT [OBOL:automatic] synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic] synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic] synonym: "ovaries" RELATED OMO:0003004 [] synonym: "ovarium" RELATED OMO:0003011 [Wikipedia:Ovary] synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039] synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic] synonym: "reproductive system of female organism gonada" EXACT [OBOL:automatic] xref: AAO:0000371 xref: BILA:0000125 xref: BSA:0000080 xref: BTO:0000975 xref: CALOHA:TS-0730 xref: EFO:0000973 xref: EHDAA2:0001360 xref: EHDAA:8124 xref: EMAPA:17962 xref: EV:0100111 xref: FBbt:00004865 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7209 xref: GAID:367 xref: MA:0000384 xref: MESH:D010053 xref: MIAA:0000125 xref: NCIT:C12404 xref: SCTID:181464007 xref: TAO:0000403 xref: UMLS:C0029939 {source="ncithesaurus:Ovary"} xref: VHOG:0000251 xref: Wikipedia:Ovary xref: XAO:0000258 xref: ZFA:0000403 is_a: UBERON:0000991 ! gonad is_a: UBERON:0003134 ! female reproductive organ relationship: develops_from UBERON:0009117 ! indifferent gonad relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI property_value: external_definition "Either of paired female reproductive organs involved in production of ova and female sex hormones.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000371", ontology="AAO", source="AAO:BJB"} property_value: external_definition "Female reproductive organ.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000403", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "ovarian" xsd:string property_value: homology_notes "(...) while it is likely that Urbilateria lacked a complex somatic reproductive system, it is at present impossible to speculate on whether or not it possessed a true gonad, let alone any other somatic adaptations for reproduction (reference 1); Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved (reference 2).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000251", ontology="VHOG", source="DOI:10.1093/icb/icm052 Extavour CGM, Gray anatomy: phylogenetic patterns of somatic gonad structures and reproductive strategies across the Bilateria. Integrative and Comparative Biology (2007), DOI:10.1146/annurev.cellbio.042308.13350 DeFalco T and Capel B, Gonad morphogenesis in vertebrates: divergent means to a convergent end. Annual review of cell and developmental biology (2009)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo" xsd:string {source="WP"} [Term] id: UBERON:0000993 name: oviduct def: "A tube or collection of tubes in an animal from the ovaries to the outside of the body." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: uberon_slim subset: vertebrate_core synonym: "female reproductive tracts" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "ovarian duct" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ovarian tube" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "oviducts" RELATED OMO:0003004 [ZFA:0000560] synonym: "tuba uterina" RELATED [BTO:0000980] synonym: "tuba uterinae" RELATED [BTO:0000980] synonym: "tubular parts of female reproductive system" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "uterine tube" NARROW [] xref: AAO:0010533 xref: BSA:0000083 xref: BTO:0000980 xref: EFO:0000974 xref: EMAPA:18984 xref: GAID:366 xref: MAT:0000126 xref: MESH:D010057 xref: MIAA:0000126 xref: NCIT:C77957 xref: TAO:0000560 xref: UMLS:C0029954 {source="ncithesaurus:Oviduct"} xref: VHOG:0001136 xref: Wikipedia:Oviduct xref: XAO:0003052 xref: ZFA:0000560 is_a: UBERON:0000025 ! tube is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000474 ! female reproductive system property_value: curator_notes "sometimes oviduct is used interchangeably with follaopian tube. Here they are different - the oviduct connects the gonad to the outside in a variety of animals. The mammal-class fallopian tube is derived from the mullerian duct and connects the gonads/infubdibulum to the uterus" xsd:string property_value: external_definition "A passage through which ova leave the maternal body or pass to an organ communicating with the exterior of the body. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001136", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/oviduct"} property_value: homology_notes "In all remaining vertebrates (i.e., coelacanths, lungfishes, amphibians, reptiles, birds, and mammals), the oviduct arises in ontogeny as a longitudinal, groovelike invagination of the coelomic epithelium on the lateral surface of the mesonephros.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001136", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.687-688", source="http://bgee.unil.ch/"} property_value: taxon_notes "in birds divided into infundibulum, magnum, isthmus, uterus, and vagina" xsd:string property_value: taxon_notes "The only female vertebrates to lack oviducts are the jawless fishes. In these species, the single fused ovary releases eggs directly into the body cavity. The fish eventually extrudes the eggs through small genital pores towards the rear of the body[WP]" xsd:string [Term] id: UBERON:0000994 name: spermathecum def: "An organ of the female reproductive tract that functions to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready." [https://github.com/obophenotype/uberon/issues/1405, Wikipedia:Spermatheca] subset: dubious_grouping subset: efo_slim subset: uberon_slim synonym: "receptaculum seminis" RELATED [BTO:0001273] synonym: "seminal receptacle" RELATED [] synonym: "spermatheca" RELATED OMO:0003004 [] synonym: "spermathecae" RELATED OMO:0003004 [] xref: BTO:0001273 xref: EFO:0000977 xref: FBbt:00004921 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000945 xref: MAT:0000168 xref: MIAA:0000168 xref: TGMA:0000560 xref: WBbt:0005319 xref: Wikipedia:Spermatheca is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure relationship: never_in_taxon NCBITaxon:314146 relationship: part_of UBERON:0000991 ! gonad property_value: taxon_notes "Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation" xsd:string [Term] id: UBERON:0000995 name: uterus def: "The female muscular organ of gestation in which the developing embryo or fetus is nourished until birth." [MGI:csmith, MP:0001120] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim xref: BTO:0001424 xref: CALOHA:TS-1102 xref: EFO:0000975 xref: EMAPA:29915 xref: EV:0100113 xref: FMA:17558 xref: GAID:172 xref: galen:Uterus xref: MA:0000389 xref: MAT:0000127 xref: MESH:D014599 xref: MIAA:0000127 xref: NCIT:C12405 xref: SCTID:181452004 xref: UMLS:C0042149 {source="ncithesaurus:Uterus"} xref: VHOG:0001137 xref: Wikipedia:Uterus is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct relationship: immediate_transformation_of UBERON:0005795 ! embryonic uterus relationship: part_of UBERON:0004175 ! internal genitalia relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI property_value: development_notes "Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused [Wikipedia:Uterus]" xsd:string property_value: external_definition "The hollow muscular organ in female mammals in which the blastocyst normally becomes embedded and in which the developing embryo and fetus is nourished. Its cavity opens into the vagina below and into a uterine tube on either side. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001137", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/uterus"} property_value: has_relational_adjective "uterine" xsd:string property_value: homology_notes "An infundibulum, uterine tube, uterus, and vagina also differentiate along the oviducts of eutherian mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001137", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.678", source="http://bgee.unil.ch/"} property_value: taxon_notes "Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle 'vagina' which functions as the birth canal. Marsupial embryos form a choriovitelline 'placenta' (which can be thought of as something between a monotreme egg and a 'true' placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream." xsd:string [Term] id: UBERON:0000996 name: vagina def: "A fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Vagina] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "distal oviductal region" RELATED [] synonym: "distal portion of oviduct" RELATED [] synonym: "vaginae" RELATED OMO:0003004 [] xref: BTO:0000243 xref: CALOHA:TS-1103 xref: EFO:0000976 xref: EMAPA:18986 xref: EV:0100117 xref: FMA:19949 xref: GAID:381 xref: galen:Vagina xref: MA:0000394 xref: MAT:0000128 xref: MESH:D014621 xref: MIAA:0000128 xref: NCIT:C12407 xref: SCTID:181441005 xref: UMLS:C0042232 {source="ncithesaurus:Vagina"} xref: VHOG:0001138 xref: Wikipedia:Vagina is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus relationship: part_of UBERON:0003975 {source="FMA"} ! internal female genitalia property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Illu_repdt_female.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a4/Vaginal_opening_-_english_description.jpg" xsd:anyURI property_value: development_notes "'The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria.' Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688" xsd:string property_value: external_definition "Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" xsd:string {date_retrieved="2012-11-29", external_class="FMA:19949", ontology="FMA"} property_value: external_definition "The genital canal in the female, leading from the opening of the vulva to the cervix of the uterus. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001138", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/vagina"} property_value: has_relational_adjective "vaginal" xsd:string property_value: homology_notes "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001138", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.688", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000997 name: mammalian vulva def: "External genital organs of the female mammal[WP]." [Wikipedia:Vulva] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "female pudendum" EXACT DEPRECATED [BTO:0003101, doi:10.1002/ca.23705, FMA:20462] synonym: "mammalian vulva" EXACT [] synonym: "puboperineal region" EXACT [FMA:20462] synonym: "pudendum" RELATED DEPRECATED [BTO:0003101, doi:10.1002/ca.23705] synonym: "pudendum femininum" EXACT DEPRECATED [doi:10.1002/ca.23705, FMA:20462, FMA:TA] synonym: "pudendum femininum" RELATED DEPRECATED [doi:10.1002/ca.23705, Wikipedia:Vulva] synonym: "pudendum muliebre" RELATED DEPRECATED [BTO:0003101, doi:10.1002/ca.23705] synonym: "vulva" EXACT [MA:0000395] xref: BTO:0003101 xref: CALOHA:TS-1168 xref: EFO:0000978 xref: EMAPA:36631 xref: EV:0100118 xref: FMA:20462 xref: GAID:383 xref: galen:Vulva xref: MA:0000395 xref: MAT:0000169 xref: MESH:D014844 xref: MIAA:0000169 xref: NCIT:C12408 xref: SCTID:265796001 xref: UMLS:C0042993 {source="ncithesaurus:Vulva"} xref: VHOG:0001458 xref: Wikipedia:Vulva is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0005056 ! external female genitalia property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Female_unshaved_genitalia.jpg" xsd:anyURI property_value: external_definition "The external genital organs of the female, including the labia majora, labia minora, clitoris, and vestibule of the vagina. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001458", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/vulva"} property_value: has_relational_adjective "vulval" xsd:string [Term] id: UBERON:0000998 name: seminal vesicle def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract posterolateral to the urinary bladder and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, Wikipedia:Seminal_vesicle] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "glandula seminalis" RELATED [BTO:0001234] synonym: "glandula vesiculosa" RELATED [BTO:0001234] synonym: "gonecyst" RELATED [] synonym: "seminal gland" BROAD [] synonym: "vas efferens" RELATED [] synonym: "vesicula seminalis" RELATED [BTO:0001234, Wikipedia:Seminal_vesicle] synonym: "vesiculae seminales" RELATED OMO:0003011 [Wikipedia:Seminal_vesicle] synonym: "vesicular gland" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular glands" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular seminalis" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesiculæ seminales" RELATED [Wikipedia:Seminal_vesicle] xref: AAO:0010788 xref: BTO:0001234 xref: CALOHA:TS-0919 xref: EFO:0000986 xref: EMAPA:19180 xref: EV:0100106 xref: FMA:19386 xref: GAID:394 xref: MA:0000410 xref: MAT:0000171 xref: MESH:D012669 xref: MIAA:0000171 xref: NCIT:C12787 xref: SCTID:181434004 xref: UMLS:C0036628 {source="ncithesaurus:Seminal_Vesicle"} xref: VHOG:0001379 xref: Wikipedia:Seminal_vesicle is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006868 ! seminal fluid secreting gland relationship: develops_from UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000473 ! testis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: external_definition "Either of a pair of pouchlike glands situated on each side of the male urinary bladder that secrete seminal fluid and nourish and promote the movement of spermatozoa through the urethra. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001379", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/prominence"} property_value: function_notes "The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70% of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid." xsd:string property_value: homology_notes "(In mammalian testis) Along the way (the sperm travel), three accessory sex glands, the seminal vesicle, prostate, and bulbourethral (Cowper's) gland, respectively, add their secretions as sperm move from the testes to the urethra.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001379", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.556", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000999 name: ejaculatory duct def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]." [Wikipedia:Ejaculatory_duct] subset: efo_slim subset: uberon_slim synonym: "ductus ejaculatorii" EXACT OMO:0003004 [BTO:0001580] synonym: "ductus ejaculatorii" RELATED OMO:0003011 [Wikipedia:Ejaculatory_duct] synonym: "ductus ejaculatorius" EXACT [BTO:0001580] xref: BTO:0001580 xref: CALOHA:TS-0211 xref: EFO:0000985 xref: EMAPA:19088 xref: FMA:19325 xref: GAID:388 xref: MA:0003247 xref: MAT:0000170 xref: MESH:D004543 xref: MIAA:0000170 xref: NCIT:C32493 xref: SCTID:279665005 xref: UMLS:C0013747 {source="ncithesaurus:Ejaculatory_Duct"} xref: Wikipedia:Ejaculatory_duct is_a: UBERON:0000025 ! tube is_a: UBERON:0005904 ! duct of male reproductive system is_a: UBERON:0015212 ! lateral structure property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png" xsd:anyURI [Term] id: UBERON:0001000 name: vas deferens def: "A secretory duct that transports sperm from the testis. In mammals this is a continuation of the epididymis and ends in the prostatic urethra where it terminates to form ejaculatory duct." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MGI:pvb, MP:0002769, Wikipedia:Vas_deferens] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "deferent duct" EXACT [] synonym: "ductus deferens" EXACT [Wikipedia:Vas_deferens] synonym: "sperm duct" RELATED [] synonym: "vas deferen" EXACT [] synonym: "vasa deferentia" RELATED [] xref: BTO:0001427 xref: CALOHA:TS-1105 xref: EFO:0000981 xref: EMAPA:18681 xref: EV:0100105 xref: FMA:19234 xref: GAID:404 xref: galen:VasDeferens xref: MA:0000413 xref: MESH:D014649 xref: MIAA:0000129 xref: NCIT:C12813 xref: SCTID:245467009 xref: UMLS:C0042360 {source="ncithesaurus:Vas_Deferens"} xref: VHOG:0001135 xref: Wikipedia:Vas_deferens is_a: UBERON:0000025 ! tube is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0005352 {source="FMA"} ! spermatic cord relationship: part_of UBERON:0006947 ! male genital duct property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg" xsd:anyURI property_value: homology_notes "The continuation of the archinephric duct, now called the deferent duct, extends caudally to the cloaca or to the part of the mammalian urethra that is derived from the cloaca.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001135", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.670", source="http://bgee.unil.ch/"} property_value: taxon_notes "Most vertebrates have some form of duct to transfer the sperm from the testes to the urethra. In cartilaginous fish and amphibians, sperm is carried through the archinephric duct, which also partially helps to transport urine from the kidneys. In teleosts, there is a distinct sperm duct, separate from the ureters, and often called the vas deferens, although probably not truly homologous with that in humans. In cartilaginous fishes, the part of the archinephric duct closest to the testis is coiled up to form an epididymis. Below this are a number of small glands secreting components of the seminal fluid. The final portion of the duct also receives ducts from the kidneys in most species. In amniotes, however, the archinephric duct has become a true vas deferens, and is used only for conducting sperm, never urine. As in cartilaginous fish, the upper part of the duct forms the epididymis. In many species, the vas deferens ends in a small sac for storing sperm. The only vertebrates to lack any structure resembling a vas deferens are the primitive jawless fishes, which release sperm directly into the body cavity, and then into the surrounding water through a simple opening in the body wall." xsd:string {source="WP"} [Term] id: UBERON:0001001 name: chitin-based cuticle def: "A cuticular covering that is composed primarily of chitin. The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/index.php?func=detail&aid=3348965&group_id=36855&atid=440764, Wikipedia:Arthropod_exoskeleton, Wikipedia:Cuticle#Invertebrate_zoology] comment: EDITOR_NOTE TODO - split from exoskeleton? Also: See above sf item to see if this belongs in GO subset: efo_slim subset: uberon_slim synonym: "arthropod cuticle" RELATED [] synonym: "arthropod exoskeleton" RELATED [Wikipedia:Arthropod_exoskeleton] synonym: "cuticle" NARROW [FBbt:00004970] synonym: "exoskeleton" BROAD [] synonym: "insect cuticle" RELATED [] xref: EFO:0000944 xref: FBbt:00004970 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000240 xref: MAT:0000150 xref: MIAA:0000150 xref: Wikipedia:Arthropod_exoskeleton is_a: UBERON:0001002 ! cuticle is_a: UBERON:0007491 ! chitin-based acellular structure relationship: develops_from UBERON:0007376 ! outer epithelium relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0001002 name: cuticle def: "Tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]." [http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764, Wikipedia:Cuticle] comment: EDITOR_NOTE TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle. See also arthropod-anatomy ontology. Note in ncit Cuticle is a plant part subset: grouping_class subset: non_informative subset: uberon_slim synonym: "cuticula" RELATED [BTO:0001600] synonym: "cuticular exoskeleton" RELATED [] xref: BTO:0001600 xref: Wikipedia:Cuticle is_a: UBERON:0000476 ! acellular anatomical structure property_value: has_relational_adjective "cuticular" xsd:string [Term] id: UBERON:0001003 name: skin epidermis def: "The outer epithelial layer of the skin that is superficial to the dermis." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epidermis" BROAD [] synonym: "skin" BROAD [] synonym: "vertebrate epidermis" EXACT [] xref: AAO:0000143 xref: BTO:0000404 xref: CALOHA:TS-0283 xref: EFO:0000954 xref: EMAPA:17528 xref: EV:0100153 xref: FMA:70596 xref: GAID:932 xref: MA:0000153 xref: MAT:0000154 xref: MESH:D004817 xref: MIAA:0000154 xref: NCIT:C12708 xref: SCTID:361694003 xref: TAO:0000105 xref: UMLS:C0014520 {source="ncithesaurus:Epidermis"} xref: VHOG:0000077 xref: Wikipedia:Epidermis_(skin) xref: XAO:0000028 xref: ZFA:0000105 is_a: UBERON:0007376 ! outer epithelium is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0002097 ! skin of body relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: subclass external integument structures (AAO:0000961)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000143", ontology="AAO"} property_value: external_definition "A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Le Guellec et al, 2004.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000105", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "The outer epithelial layer of the external integument of the body that is derived from the embryonic epiblast.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000143", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "epidermal" xsd:string property_value: homology_notes "(...) outer epithelia in all metazoan animals are homologous. (...) The ancestor of all metazoans likely had an epidermis with a basal extracellular matrix (ECM), an apical extracellular glycocalyx, and one cilium with a striated rootlet per cell.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000077", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.71-72", source="http://bgee.unil.ch/"} property_value: taxon_notes "Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes)." xsd:string [Term] id: UBERON:0001004 name: respiratory system def: "Functional system which consists of structures involved in respiration." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Respiratory_system] subset: efo_slim subset: functional_classification subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "apparatus respiratorius" EXACT [] synonym: "apparatus respiratorius" RELATED [BTO:0000203] synonym: "Atmungssystem" RELATED [BTO:0000203] synonym: "respiratory system" EXACT [] synonym: "systema respiratorium" RELATED OMO:0003011 [Wikipedia:Respiratory_system] xref: AAO:0000541 xref: BTO:0000203 xref: CALOHA:TS-1319 xref: EFO:0000804 xref: EHDAA2:0001604 xref: EHDAA:2203 xref: EMAPA:16727 xref: EV:0100036 xref: FMA:7158 xref: GAID:78 xref: MA:0000327 xref: MAT:0000030 xref: MESH:D012137 xref: MIAA:0000030 xref: NCIT:C12779 xref: SCTID:278197002 xref: TAO:0000272 xref: UMLS:C0035237 {source="ncithesaurus:Respiratory_System"} xref: VHOG:0000202 xref: Wikipedia:Respiratory_system xref: XAO:0000117 xref: ZFA:0000272 is_a: UBERON:0000467 ! anatomical system relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000541", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "There is no doubt that the primitive pattern of vertebrate air-breathing is the buccal pulse pump found in actinopterygian fishes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000202", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.599 and Figure 18-23", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001005 name: respiratory airway def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] subset: grouping_class subset: uberon_slim synonym: "airway" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "airways" BROAD OMO:0003004 [http://orcid.org/0000-0002-6601-2165] xref: SCTID:361380005 xref: Wikipedia:Trachea is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0001004 ! respiratory system property_value: curator_notes "This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED). As a grouping class this is quite vague, as it is not clear where the airway begins and ends" xsd:string [Term] id: UBERON:0001006 name: obsolete spiracle def: "OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [ISBN:3110148986, Wikipedia:Spiracle] comment: This class was obsoleted as it grouped together disparate classes. For the fish structure, see UBERON:0010019. The arthropod structure will presumably be added to the arthropod anatomy subset: efo_slim synonym: "open tracheal system spiracle" NARROW [GO:0035277] synonym: "spiracle of open tracheal system" NARROW [GO:0035277] synonym: "spiracular gland" RELATED [] xref: EFO:0000936 xref: MAT:0000208 xref: MIAA:0000208 xref: Wikipedia:Spiracle is_obsolete: true consider: FBbt:00005054 consider: HAO:0000950 consider: TGMA:0000578 consider: UBERON:0010019 [Term] id: UBERON:0001007 name: digestive system def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "alimentary system" RELATED [] synonym: "alimentary tract" RELATED [] synonym: "gastrointestinal system" RELATED [] synonym: "gut" RELATED [] xref: AAO:0000129 xref: BILA:0000082 xref: BTO:0000058 xref: CALOHA:TS-1293 xref: EFO:0000793 xref: FBbt:00005055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7152 xref: GAID:278 xref: galen:DigestiveSystem xref: MA:0002431 xref: MAT:0000018 xref: MESH:D004064 xref: MIAA:0000018 xref: ncithesaurus:Digestive_System xref: SCTID:278859004 xref: TADS:0000170 xref: TAO:0000339 xref: WBbt:0005748 xref: Wikipedia:Digestive_system xref: XAO:0000125 xref: ZFA:0000339 is_a: UBERON:0000467 ! anatomical system relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000129", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class" xsd:string {external_ontology="MA"} property_value: has_relational_adjective "digestive" xsd:string [Term] id: UBERON:0001008 name: renal system def: "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products." [DOI:10.1371/journal.pone.0099864, GO:0072001] comment: EDITOR_NOTE In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "excretory system" BROAD [] synonym: "renal or urinary system" RELATED [EHDAA:5901] synonym: "renal/urinary system" RELATED [] synonym: "systema urinaria" EXACT [FMA:7159] synonym: "systema urinarium" EXACT [BTO:0003092] synonym: "urinary system" EXACT [] synonym: "urinary tract" EXACT [] xref: AAO:0010257 xref: BILA:0000015 xref: BTO:0001244 xref: BTO:0003092 xref: CALOHA:TS-1323 xref: EFO:0000803 xref: EHDAA2:0001601 xref: EHDAA:5901 xref: EMAPA:17366 xref: EV:0100095 xref: FBbt:00005056 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7159 xref: GAID:391 xref: galen:UrinaryTract xref: MA:0000325 xref: MAT:0000027 xref: MESH:D014551 xref: MIAA:0000027 xref: NCIT:C12413 xref: SCTID:362204003 xref: TADS:0000162 xref: TAO:0000163 xref: UMLS:C1508753 {source="ncithesaurus:Urinary_System"} xref: VHOG:0000723 xref: WBbt:0005736 xref: Wikipedia:Excretory_system xref: XAO:0000143 xref: ZFA:0000163 is_a: UBERON:8450002 ! excretory system relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "An anatomical system which consists of organs and tissues which produce, store, and excrete urine.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010257", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "Evolution of vertebrate renal anatomy appears quite conservative when compared, for example, to evolution of respiratory and cardiovascular systems in vertebrates. Major anatomical changes in vertebrates kidneys separate those of birds and mammals from kidneys of lower vertebrates. General increase in animal size from fish to mammals is reflected by an increase in total number of nephrons per kidney, rather than by constant change in tubular dimensions.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000723", ontology="VHOG", source="ISBN:978-3540428541 Kapoor BG, Bhavna Khanna, Ichthyology Handbook (2004) p.406", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels" xsd:string {source="GO"} property_value: taxon_notes "This definition is inclusive of the organs of the vertebrate renal system, as well as the Malpighian tubules of insects, and allows for future incorporation of structures such as the antennal glands of crustaceans" xsd:string {source="DOI:10.1371/journal.pone.0099864"} [Term] id: UBERON:0001009 name: circulatory system def: "Organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system] subset: uberon_slim synonym: "systema cardiovasculare" RELATED OMO:0003011 [Wikipedia:Circulatory_system] xref: AAO:0000959 xref: CALOHA:TS-2103 xref: MESH:D002319 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: VHOG:0001248 xref: Wikipedia:Circulatory_system is_a: UBERON:0000467 ! anatomical system relationship: dubious_for_taxon NCBITaxon:6231 {notes="WBbt coelomocyte currently classified as circulating cell"} relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} relationship: never_in_taxon NCBITaxon:6073 relationship: never_in_taxon NCBITaxon:6157 property_value: curator_notes "the cardiovascular system and the lymphatic system are parts of the circulatory system" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI property_value: external_definition "Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000959", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "We should divest ourselves of the view that earlier vertebrate groups were 'on their way' to becoming mammals, as clearly they were not such visionaries. Neither were their systems 'imperfect' as earlier anatomists thought. Instead, their circulatory systems served them well to address the ecological demands arising from their lifestyles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001248", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.493", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001010 name: diaphysis of ulna def: "The body of the ulna at its upper part is prismatic in form, and curved so as to be convex behind and lateralward; its central part is straight; its lower part is rounded, smooth, and bent a little lateralward. It tapers gradually from above downward, and has three borders and three surfaces." [Wikipedia:Body_of_ulna] synonym: "body of ulna" EXACT [FMA:33760] synonym: "corpus ulnae" EXACT [FMA:33760] synonym: "shaft of ulna" EXACT [FMA:33760] synonym: "shaft of ulna" RELATED [Wikipedia:Body_of_ulna] synonym: "supinator crest" RELATED [Wikipedia:Body_of_ulna] synonym: "ulnar diaphysis" EXACT [FMA:33760] xref: FMA:33760 xref: NCIT:C120676 xref: SCTID:302520004 xref: Wikipedia:Body_of_ulna is_a: UBERON:0004769 ! diaphysis relationship: part_of UBERON:0001424 ! ulna [Term] id: UBERON:0001011 name: hemolymph def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [Wikipedia:Hemolymph] subset: uberon_slim synonym: "haemolymph" RELATED [] xref: BTO:0000572 xref: FBbt:00005061 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1220 xref: MAT:0000054 xref: MESH:D006458 xref: MIAA:0000054 xref: TGMA:0000000 xref: Wikipedia:Hemolymph is_a: UBERON:0000463 ! organism substance relationship: never_in_taxon NCBITaxon:33511 relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001012 name: head of radius def: "The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]." [Wikipedia:Head_of_radius] subset: pheno_slim synonym: "caput radii" RELATED OMO:0003011 [Wikipedia:Head_of_radius] synonym: "radial head" EXACT [FMA:33773] xref: FMA:33773 xref: galen:HeadOfRadius xref: SCTID:181941003 xref: Wikipedia:Head_of_radius is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/47/Gray214.png" xsd:anyURI [Term] id: UBERON:0001013 name: adipose tissue def: "Portion of connective tissue composed of adipocytes enmeshed in areolar tissue." [http://orcid.org/0000-0002-6601-2165, MESH:A10.165.114, MGI:cwg, MP:0000003, Wikipedia:Adipose_tissue] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "adipose" RELATED [BTO:0001487] synonym: "bodyfat" RELATED [BTO:0001487] synonym: "fat" EXACT [MA:0000009] synonym: "fat tissue" EXACT [] synonym: "fatty depot" RELATED [] synonym: "fatty tissue" EXACT [] xref: AAO:0000001 xref: AEO:000020 xref: BTO:0001487 xref: CALOHA:TS-0013 xref: EFO:0000790 xref: EHDAA2:0003120 xref: EMAPA:35112 xref: EV:0100381 xref: FMA:20110 xref: GAID:920 xref: galen:FattyTissue xref: MA:0000009 xref: MAT:0000015 xref: MESH:D000273 xref: MIAA:0000015 xref: NCIT:C12472 xref: SCTID:55603005 xref: TAO:0002134 xref: UMLS:C0001527 {source="ncithesaurus:Adipose_Tissue"} xref: VHOG:0001284 xref: Wikipedia:Adipose_tissue xref: XAO:0003049 xref: ZFA:0005345 is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: subclass connective tissue proper (AAO:0000099)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000001", ontology="AAO"} property_value: external_definition "Connective tissue in which fat is stored.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002134", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Tissue that contains adipocytes, used for cushioning, thermal insulation, lubrication (primarily in the pericardium) and energy storage.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000001", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "in FMA this is dense irregular connective tissue" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "adipose" xsd:string property_value: homology_notes "Adipose tissue is unique to vertebrates. It is found in mostmammals, birds, reptiles and amphibians, and a variety is found in some species of fish. Furthermore, in insects the fat body found in larvae as well as in adults shares some homology with adipose tissue.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001284", ontology="VHOG", source="DOI:10.1017/S0029665107005423 Haugen F, Drevon CA, The interplay between nutrients and the adipose tissue. The Proceedings of the Nutrition Society (2007)", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans, adipose tissue is located beneath the skin (subcutaneous fat), around internal organs (visceral fat), in bone marrow (yellow bone marrow) and in breast tissue. Adipose tissue is found in specific locations, which are referred to as adipose depots. Adipose tissue contains several cell types, with the highest percentage of cells being adipocytes, which contain fat droplets. Other cell types include fibroblasts, macrophages, and endothelial cells. Adipose tissue contains many small blood vessels.; Mice have eight major adipose depots, four of which are within the abdominal cavity. The paired gonadal depots are attached to the uterus and ovaries in females and the epididymis and testes in males; the paired retroperitoneal depots are found along the dorsal wall of the abdomen, surrounding the kidney, and, when massive, extend into the pelvis. The mesenteric depot forms a glue-like web that supports the intestines, and the omental depot, which originates near the stomach and spleen, and, when massive, extends into the ventral abdomen." xsd:string [Term] id: UBERON:0001014 name: obsolete fat body synonym: "fat pad" EXACT [] is_obsolete: true consider: UBERON:0003917 [Term] id: UBERON:0001015 name: musculature def: "A subdivision of the muscular system corresponding to a subdisivision of an organism." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Muscular_system] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "muscle group" EXACT [] synonym: "muscle system" RELATED [] synonym: "muscles" RELATED [] synonym: "muscles set" EXACT [] synonym: "musculature" EXACT [] synonym: "musculature system" RELATED [] synonym: "musculi" EXACT OMO:0003011 [FMA:32558, FMA:TA] synonym: "set of muscles" EXACT [FMA:32558] synonym: "set of skeletal muscles" EXACT [MA:0000165] xref: BTO:0000887 xref: EFO:0001949 xref: EMAPA:35577 xref: FMA:32558 xref: MA:0000165 xref: NCIT:C13056 xref: TAO:0000548 xref: UMLS:C0026845 {source="ncithesaurus:Muscle"} xref: VSAO:0005038 xref: WBbt:0005737 xref: Wikipedia:Muscular_system xref: ZFA:0000548 is_a: UBERON:0011216 ! organ system subdivision relationship: mutually_spatially_disjoint_with UBERON:0001474 ! bone element relationship: part_of UBERON:0000383 ! musculature of body property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png" xsd:anyURI property_value: external_ontology_notes "In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001016 name: nervous system def: "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]." [BIRNLEX:844, ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nerve net" NARROW [Wikipedia:Nerve_net] synonym: "neurological system" EXACT [GO:0050877] synonym: "systema nervosum" RELATED OMO:0003011 [Wikipedia:Nervous_system] xref: AAO:0000324 xref: BILA:0000079 xref: BIRNLEX:844 xref: BTO:0001484 xref: CALOHA:TS-1313 xref: EFO:0000802 xref: EHDAA2:0001246 xref: EHDAA:826 xref: EMAPA:16469 xref: EV:0100162 xref: FBbt:00005093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7157 xref: GAID:466 xref: MA:0000016 xref: MAT:0000026 xref: MESH:D009420 xref: MIAA:0000026 xref: NCIT:C12755 xref: neuronames:3236 xref: SCTID:278196006 xref: TAO:0000396 xref: UMLS:C0027763 {source="ncithesaurus:Nervous_System"} xref: VHOG:0000402 xref: WBbt:0005735 xref: Wikipedia:Nervous_system xref: XAO:0000177 xref: ZFA:0000396 is_a: UBERON:0000467 ! anatomical system relationship: immediate_transformation_of UBERON:0016880 {source="Bgee:AN"} ! future nervous system relationship: never_in_taxon NCBITaxon:6040 relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png" xsd:anyURI property_value: external_definition "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000396", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000324", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "nervous" xsd:string property_value: has_relational_adjective "neural" xsd:string property_value: homology_notes "Nervous systems evolved in the ancestor of Eumetazoa.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000402", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.117", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001017 name: central nervous system def: "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord." [GO:0021551, http://www.frontiersinzoology.com/content/7/1/29, https://sourceforge.net/p/geneontology/ontology-requests/11422/] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebrospinal axis" NARROW [FMA:55675] synonym: "CNS" EXACT OMO:0003000 [] synonym: "neuraxis" RELATED [FMA:55675] synonym: "systema nervosum centrale" EXACT OMO:0003011 [FMA:55675, FMA:TA] xref: AAO:0000090 xref: BAMS:CNS xref: BILA:0000080 xref: BIRNLEX:1099 xref: BTO:0000227 xref: CALOHA:TS-0150 xref: EFO:0000908 xref: EHDAA2:0000225 xref: EHDAA:828 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 xref: FBbt:00005094 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:55675 xref: GAID:570 xref: MA:0000167 xref: MAT:0000457 xref: MESH:D002490 xref: NCIT:C12438 xref: neuronames:854 xref: SCTID:278199004 xref: TAO:0000012 xref: UMLS:C0927232 {source="ncithesaurus:Central_Nervous_System", source="BIRNLEX:1099"} xref: VHOG:0000293 xref: Wikipedia:Central_nervous_system xref: XAO:0000215 xref: ZFA:0000012 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 {source="FBbt", source="cjm"} ! organ system subdivision relationship: immediate_transformation_of UBERON:0016879 {source="Bgee:AN"} ! future central nervous system relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} relationship: part_of UBERON:0001016 ! nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Part of the nervous system which includes the brain and spinal cord.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000090", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The brain and spinal cord. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000012", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "The central nervous system (CNS) is the part of the nervous system which includes the brain, spinal cord, and nerve cell layer of the retina (CUMBO)." xsd:string {source="BIRNLEX:1099"} property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2); Taken together, our data make a very strong case that the complex molecular mediolateral architecture of the developing trunk CNS (central nervous system), as shared between Platynereis and vertebrates, was already present in their last common ancestor, Urbilateria. The concept of bilaterian nervous system centralization implies that neuron types concentrate on one side of the trunk, as is the case in vertebrates and many invertebrates including Platynereis, where they segregate and become spatially organized (as opposed to a diffuse nerve net). Our data reveal that a large part of the spatial organization of the annelid and vertebrate CNS was already present in their last common ancestor, which implies that Urbilateria had already possessed a CNS (reference 3).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000293", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28 (reference 1), ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165 (reference 2), DOI:10.1016/j.cell.2007.02.040 Denes AS, Jekely G, Steinmetz PRH, Raible F, Snyman H, Prud'homme B, Ferrier DEK, Balavoine G and Arendt D, Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in Bilateria. Cell (2007) (reference 3)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001018 name: axon tract def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, https://github.com/obophenotype/uberon/issues/286] comment: WP says this is the analog of peripheral nerves in CNS. subset: cumbo subset: pheno_slim synonym: "axonal tract" EXACT [] synonym: "nerve tract" NARROW [BIRNLEX:1649] synonym: "nerve tract" RELATED [] synonym: "neuraxis tract" EXACT [FMA:83847] synonym: "tract" RELATED [] synonym: "tract of neuraxis" EXACT [FMA:83847] xref: BIRNLEX:1649 xref: EV:0100304 xref: FBbt:00005100 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:83847 xref: NLX:147822 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster property_value: external_definition "White matter structure of CNS that contains axons that arise predominantly in one central nervous system part and terminate in another. Tracts are generally named by their region or origin followed by their region of primary termination, e.g., mammillothalamic tract contains axons that arise from neurons in the mammillary bodies and terminate in the thalamus. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} [Term] id: UBERON:0001019 name: nerve fasciculus def: "A slender neuron projection bundle[FBbt]; A bundle of anatomical fibers, as of muscle or nerve (American Heritage Dictionary 4th ed)." [BIRNLEX:872, FBbt:00005101] comment: EDITOR_NOTE note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle' subset: uberon_slim synonym: "fascicle" BROAD [FBbt:00005101] synonym: "fasciculus" EXACT OMO:0003011 [] synonym: "nerve bundle" EXACT [FMA:12235] synonym: "nerve fasciculus" EXACT [FMA:12235] synonym: "nerve fiber tract" RELATED [BTO:0002191] synonym: "neural fasciculus" EXACT [FMA:12235] xref: BIRNLEX:872 xref: BTO:0002191 xref: EMAPA:36605 xref: FMA:12235 xref: NCIT:C32586 xref: TGMA:0000088 xref: UMLS:C1185741 {source="ncithesaurus:Fascicle"} xref: Wikipedia:Nervous_system_fascicle is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0001020 name: nervous system commissure def: "Axon tract that crosses the midline of the central nervous system[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]." [https://github.com/obophenotype/uberon/issues/300, https://github.com/obophenotype/uberon/issues/325, NLXANAT:20090513] comment: *not* the same as FMA:76741 Commissure subset: cumbo subset: uberon_slim synonym: "commissure" BROAD [] synonym: "commissure of neuraxis" EXACT [FMA:83906] synonym: "neuraxis commissure" EXACT [FMA:83906] synonym: "white matter commissure" NARROW [CUMBO:CUMBO] xref: FMA:83906 xref: NCIT:C32349 xref: NLX:110 xref: NLXANAT:20090513 xref: TADS:0000201 xref: UMLS:C1185742 {source="ncithesaurus:Commissure"} xref: Wikipedia:Commissure is_a: UBERON:0001018 ! axon tract property_value: external_definition "White matter fiber bundle that crosses the midline of the brain or spinal cord, that connects similar structures on both sides. (CUMBO; Heimer, L. The Human Brain, 2nd ed., 1995, pg 6)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: has_relational_adjective "commissural" xsd:string [Term] id: UBERON:0001021 name: nerve def: "An enclosed, cable-like bundle of axons in the peripheral nervous system originating in a nerve root in the central nervous system (or a condensed nervous structure) connecting with peripheral structures." [FBbt:00005105, http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nerves" EXACT OMO:0003004 [TAO:0007009] synonym: "neural subtree" RELATED [FMA:65132] synonym: "peripheral nerve" EXACT [http://orcid.org/0000-0002-6601-2165] xref: AAO:0011070 xref: AEO:0000137 xref: BAMS:n xref: BIRNLEX:1615 xref: BSA:0000098 xref: BTO:0000925 xref: BTO:0001027 xref: CALOHA:TS-0772 xref: EHDAA2:0003137 xref: EHDAA:2851 xref: EHDAA:3776 xref: EHDAA:4657 xref: EMAPA:32808 xref: EMAPA:32815 xref: EV:0100371 xref: FBbt:00005105 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:65132 xref: FMA:65239 xref: GAID:747 xref: GAID:758 xref: galen:Nerve xref: MA:0000217 xref: MA:0000228 xref: MESH:D010525 xref: NCIT:C12466 xref: NCIT:C12768 xref: NLX:147826 xref: SCTID:244457007 xref: SCTID:256864008 xref: TAO:0007009 xref: UMLS:C0027740 {source="ncithesaurus:Nerve"} xref: UMLS:C0031119 {source="ncithesaurus:Peripheral_Nerve"} xref: VHOG:0000901 xref: Wikipedia:Nervous_system xref: XAO:0000204 xref: XAO:0003047 xref: ZFA:0007009 is_a: UBERON:0000122 {source="FBbt"} ! neuron projection bundle relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0007009", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "nervous" xsd:string [Term] id: UBERON:0001022 name: obsolete cell body is_obsolete: true consider: FBbt:00005107 consider: FMA:67301 consider: GO:0043025 consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1044911821 [Term] id: UBERON:0001023 name: obsolete dendrite def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Dendrite] comment: Made obsolete as it was equivalent to GO class subset: uberon_slim xref: Wikipedia:Dendrite property_value: has_relational_adjective "dendritic" xsd:string is_obsolete: true consider: FBbt:00005110 consider: FMA:67314 consider: GAID:749 consider: GO:0030425 consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1211023249 consider: MESH:A08.663.256 consider: NCIT:C32447 consider: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA consider: TGMA:0001373 consider: UMLS:C0011305 [Term] id: UBERON:0001024 name: obsolete neurite def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Neurite] comment: Made obsolete as it was equivalent to GO class subset: uberon_slim xref: Wikipedia:Neurite is_obsolete: true consider: FBbt:00005113 consider: FMA:61814 consider: GAID:751 consider: GO:0043005 consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-867568886 consider: MESH:A08.663.256.500 [Term] id: UBERON:0001025 name: obsolete synapse def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Synapse] comment: Made obsolete as it was equivalent to GO class subset: uberon_slim synonym: "synaptic junction" EXACT [] xref: Wikipedia:Synapse property_value: has_relational_adjective "synaptic" xsd:string is_obsolete: true consider: FBbt:00005114 consider: FMA:67408 consider: GAID:766 consider: GO:0045202 consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao914572699 consider: MESH:A08.850 consider: NCIT:C13281 consider: SCTID:362298009 consider: UMLS:C0039062 [Term] id: UBERON:0001026 name: obsolete motor nerve def: "A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [Wikipedia:Motor_nerve] synonym: "efferent nerve" RELATED [] synonym: "nervus motorius" EXACT [] xref: Wikipedia:Motor_nerve is_obsolete: true replaced_by: UBERON:0006798 [Term] id: UBERON:0001027 name: sensory nerve def: "A nerve that transmits from sensory receptors on the surface of the body to the central nervous system." [UBERON:cjm, Wikipedia:Sensory_nerve] subset: pheno_slim subset: uberon_slim synonym: "afferent nerve" RELATED [] synonym: "nervus sensorius" EXACT OMO:0003011 [Wikipedia:Sensory_nerve] xref: AEO:0000201 xref: EHDAA2:0003200 xref: FBbt:00005136 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5868 xref: Wikipedia:Sensory_nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001028 name: diaphysis of radius def: "A diaphysis that is part of a radius bone[Automatically generated definition]." [OBOL:automatic, Wikipedia:Body_of_radius] subset: pheno_slim synonym: "body of radius" EXACT [FMA:33782] synonym: "corpus radii" EXACT [FMA:33782] synonym: "radial diaphysis" EXACT [FMA:33782] synonym: "radial shaft" RELATED [Wikipedia:Body_of_radius] synonym: "shaft of radius" EXACT [FMA:33782] synonym: "shaft of radius" RELATED [Wikipedia:Body_of_radius] xref: FMA:33782 xref: NCIT:C120674 xref: SCTID:302518002 xref: Wikipedia:Body_of_radius is_a: UBERON:0004769 ! diaphysis relationship: part_of UBERON:0001423 ! radius bone property_value: external_definition "The body of the radius (or shaft of radius) is prismoid in form, narrower above than below, and slightly curved, so as to be convex lateralward. It presents three borders and three surfaces[Wikipedia:Body_of_radius]." xsd:string {source="Wikipedia:Body_of_radius"} [Term] id: UBERON:0001029 name: obsolete neuromuscular junction subset: uberon_slim synonym: "junctio neuromuscularis" RELATED OMO:0003011 [Wikipedia:Neuromuscular_junction] synonym: "synapsis neuromuscularis" RELATED OMO:0003011 [Wikipedia:Neuromuscular_junction] xref: Wikipedia:Neuromuscular_junction is_obsolete: true replaced_by: GO:0031594 consider: FBbt:00005142 consider: FMA:61803 consider: GAID:809 consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1124888485 consider: MESH:D009469 [Term] id: UBERON:0001030 name: obsolete synaptic ribbon synonym: "ribbon synapse" EXACT [] is_obsolete: true consider: FBbt:00005143 consider: FMA:67107 consider: GO:0048788 consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1884931180 [Term] id: UBERON:0001031 name: sheath of Schwann def: "The outermost nucleated cytoplasmic layer of Schwann cells that surrounds the axon of the neuron. It forms the outermost layer of the nerve fiber in the peripheral nervous system. The neurolemma is underlain by the basal lamina (referred to as the medullary sheath in the included illustrations. In CNS, axons are myelinated by oligodendrocytes, thus lack neurolemma." [Wikipedia:Neurolemma] subset: uberon_slim synonym: "endoneural membrane" RELATED [BTO:0003048] synonym: "neurilemma" EXACT [FMA:62976] synonym: "neurolemma" EXACT [] synonym: "Schwann's membrane" RELATED [BTO:0003048] synonym: "sheath of Schwann" EXACT [] xref: BTO:0003048 xref: FMA:62976 xref: GAID:730 xref: MESH:D009441 xref: NCIT:C33544 xref: UMLS:C0027807 {source="ncithesaurus:Sheath_of_Schwann"} xref: Wikipedia:Neurilemma is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/34/Gray631.png" xsd:anyURI property_value: external_ontology_notes "FMA def is 'Neural tissue which consists of Schwann cells' which does not fit, but we still use 'neural tissue' here. WP def specifically states Schwann cells, which would restrict it to PNS" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001032 name: sensory system def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system] subset: efo_slim subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "organa sensuum" EXACT OMO:0003011 [FMA:75259, FMA:TA] synonym: "organa sensuum" RELATED OMO:0003011 [Wikipedia:Sensory_system] synonym: "sense organ subsystem" EXACT [] synonym: "sense organs" EXACT [FMA:75259] synonym: "sense organs set" EXACT [FMA:75259] synonym: "sensory organ system" RELATED [] synonym: "sensory subsystem" EXACT [] synonym: "sensory systems" EXACT OMO:0003004 [TAO:0000282] synonym: "set of sense organs" RELATED [FMA:75259] xref: AAO:0000555 xref: BAMS:SEN xref: BILA:0000099 xref: EFO:0000805 xref: EHDAA2:0003094 xref: EMAPA:16192 xref: FBbt:00007692 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:75259 xref: MA:0002442 xref: MAT:0000031 xref: MIAA:0000031 xref: NLXANAT:090816 xref: TAO:0000282 xref: VHOG:0001674 xref: Wikipedia:Sensory_system xref: XAO:0003194 xref: ZFA:0000282 is_a: UBERON:0015203 ! non-connected functional system relationship: part_of UBERON:0004456 ! entire sense organ system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI property_value: external_ontology_notes "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string property_value: homology_notes "An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001674", ontology="VHOG", source="DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001033 name: gustatory system def: "The sensory system for the sense of taste." [NLXANAT:090803] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "gustatory organ system" EXACT [] synonym: "taste system" EXACT [] xref: AAO:0010577 xref: BILA:0000143 xref: EFO:0000830 xref: FMA:7194 xref: MA:0002446 xref: MAT:0000275 xref: MIAA:0000275 xref: neuronames:2889 xref: NLXANAT:090803 xref: SCTID:423940004 xref: TAO:0001101 xref: Wikipedia:Gustatory_system xref: XAO:0003197 xref: ZFA:0001101 is_a: UBERON:0000467 ! anatomical system property_value: external_definition "The sensory system for the sense of taste[NLXANAT:090803]." xsd:string {source="NLXANAT:090803"} property_value: external_definition "The sensory system used for the sense of taste.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010577", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "in ZFA and MA this is a subtype of sensory system. we should change sensory system to disambiguate parts and wholes" xsd:string {external_ontology="ZFA"} property_value: has_relational_adjective "gustatory" xsd:string [Term] id: UBERON:0001034 name: obsolete photoreceptor def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous." [Wikipedia:Photoreceptor] xref: BTO:0001060 xref: Wikipedia:Photoreceptor is_obsolete: true consider: CL:0000210 consider: FBbt:00005162 consider: FMA:85613 consider: GAID:778 [Term] id: UBERON:0001035 name: dento-alveolar joint def: "A joint that binds the teeth to the alveolar ridge." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Gomphosis] synonym: "dento-alveolar syndesmosis" EXACT [FMA:7495] synonym: "gomphosis" EXACT [MA:0001499] synonym: "peg-and-socket joint" EXACT [FMA:7495] synonym: "socket" BROAD [FMA:7495] synonym: "syndesmosis dentoalveolaris" EXACT OMO:0003011 [FMA:7495, FMA:TA] xref: EMAPA:37464 {source="MA:th"} xref: FMA:7495 xref: MA:0001499 xref: SCTID:50870008 xref: Wikipedia:Gomphosis is_a: UBERON:0002209 {source="FMA"} ! fibrous joint relationship: part_of UBERON:0001708 ! jaw skeleton property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png" xsd:anyURI property_value: external_ontology_notes "MA classifies this as a cartilaginous joint" xsd:string {external_ontology="MA"} property_value: structure_notes "Specifically, the connection is made between the maxillary or mandible to the cementum of the tooth. The motion of a gomphosis is very minimal, though considerable movement can be achieved over time--the basis of using braces to realign teeth. The joint can be considered a synarthrosis or an amphiarthrosis. The gomphosis is the only joint-type in which a bone does not join another bone, as teeth are not technically bone. In modern, more anatomical, joint classification, the gomphosis is simply considered a fibrous joint because the tissue linking the structures is ligamentous[WP]" xsd:string [Term] id: UBERON:0001037 name: strand of hair def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [Wikipedia:Hair] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "coat hair" RELATED [] synonym: "coat/ hair" RELATED [] synonym: "fur" RELATED [] synonym: "hair" EXACT [] synonym: "microchaeta" RELATED [] synonym: "quill" RELATED SENSU [] synonym: "setulae" RELATED [] synonym: "vibrissa" RELATED SENSU [] synonym: "whisker" RELATED SENSU [] xref: BTO:0001501 xref: CALOHA:TS-0430 xref: EFO:0000958 xref: EMAPA:18769 xref: EV:0100157 xref: FMA:53667 xref: GAID:71 xref: MA:0000155 xref: MAT:0000160 xref: MESH:D006197 xref: MIAA:0000160 xref: NCIT:C32705 xref: SCTID:361702001 xref: UMLS:C0018494 {source="ncithesaurus:Hair"} xref: VHOG:0001191 xref: Wikipedia:Hair is_a: UBERON:0000021 {source="FMA"} ! cutaneous appendage relationship: develops_from UBERON:0002073 ! hair follicle relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis relationship: part_of UBERON:0011932 {source="FMA"} ! pilosebaceous unit property_value: curator_notes "this class defines an individual hair" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/25/Gray945.png" xsd:anyURI property_value: editor_note "TODO for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales)" xsd:string [Term] id: UBERON:0001038 name: chordotonal organ def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament." [FB:FBrf0056378, Wikipedia:Chordotonal_organ] comment: To be ceded to Arthropod anatomy ontology subset: efo_slim subset: organ_slim subset: uberon_slim synonym: "ch" RELATED [] synonym: "scolopophorous organ" RELATED [] xref: EFO:0000940 xref: FBbt:00005215 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000209 xref: MIAA:0000209 xref: Wikipedia:Chordotonal_organ is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0001040 name: yolk sac def: "A sac-like expansion of the ventral wall of the intestine, narrowed into a yolk stalk near the body[Hyman's]. Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes[WP]." [Wikipedia:Yolk_sac] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "saccus vitellinus" RELATED OMO:0003011 [Wikipedia:Yolk_sac] synonym: "vesicula umbilicalis" RELATED OMO:0003011 [Wikipedia:Yolk_sac] xref: BTO:0001471 xref: CALOHA:TS-1130 xref: EFO:0003078 xref: EHDAA2:0002212 xref: EHDAA:164 xref: EMAPA:16085 xref: FMA:87180 xref: GAID:1301 xref: MESH:D015017 xref: NCIT:C14128 xref: SCTID:362845002 xref: UMLS:C0043425 {source="ncithesaurus:Yolk_Sac"} xref: VHOG:0000830 xref: Wikipedia:Yolk_sac is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0005631 {seeAlso="https://github.com/obophenotype/uberon/issues/635"} ! extraembryonic membrane is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/17/Gray22.png" xsd:anyURI property_value: editor_note "consider splitting class" xsd:string property_value: external_definition "One of the extraembryonic fetal membranes that balloons out from the fetal midgut. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000830", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/yolk+sac"} property_value: external_definition "the extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells" xsd:string {source="MP:0001718"} property_value: homology_notes "Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000830", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.187", source="http://bgee.unil.ch/"} property_value: taxon_notes "In therians, a structure homologous to the yolk sac is is present, but contains no yolk platelets. Instead it is filled with fluid [ISBN:0073040584 (Vertebrates, Kardong)]" xsd:string [Term] id: UBERON:0001041 name: foregut def: "Anterior subdivision of a digestive tract." [http://orcid.org/0000-0002-6601-2165] subset: developmental_classification subset: pheno_slim subset: uberon_slim synonym: "praeenteron" RELATED OMO:0003011 [Wikipedia:Foregut] synonym: "proenteron" RELATED OMO:0003011 [Wikipedia:Foregut] xref: AAO:0011042 xref: BILA:0000085 xref: BTO:0000507 xref: EHDAA2:0000557 xref: EHDAA:520 xref: EMAPA:16548 xref: FBbt:00005379 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45616 xref: MA:0001526 xref: NCIT:C34180 xref: SCTID:361409009 xref: TGMA:0001014 xref: UMLS:C0231051 {source="ncithesaurus:Foregut"} xref: VHOG:0000285 xref: Wikipedia:Foregut xref: XAO:0000232 is_a: UBERON:0004921 ! subdivision of digestive tract property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray27.png" xsd:anyURI property_value: editor_note "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. In vertebrates the term may refer to a developmental structure" xsd:string property_value: external_definition "The anterior portion of the primitive digestive tube of the embryo that lies cephalic to the junction of the yolk stalk, consists of endodermal tissue, and gives rise to the the pharynx, lower respiratory system, esophagus, stomach, duodenum proximal to the biliary tract, liver, pancreas, biliary tract, and gall bladder." xsd:string {source="MP:0000474"} property_value: homology_notes "The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000285", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.203, ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001042 name: chordate pharynx def: "A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]." [http://www.feedexp.org] comment: Consider generalizing to deuterostome pharynx subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pharynx" BROAD SENSU [FMA:46688] xref: AAO:0000967 xref: BTO:0001049 xref: CALOHA:TS-0785 xref: EFO:0000836 xref: EHDAA2:0001458 xref: EHDAA:2947 xref: EMAPA:16706 xref: EV:0100065 xref: FMA:46688 xref: GAID:155 xref: galen:Pharynx xref: MA:0000432 xref: MESH:D010614 xref: NCIT:C12425 xref: SCTID:181211006 xref: TAO:0000056 xref: UMLS:C0031354 {source="ncithesaurus:Pharynx"} xref: VHOG:0000462 xref: Wikipedia:Pharynx xref: XAO:0003227 xref: ZFA:0000056 is_a: UBERON:0006562 ! pharynx relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region of foregut relationship: part_of UBERON:0001004 ! respiratory system property_value: axiom_lost_from_external_ontology "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: develops_from respiratory system (UBERON:0001004)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO"} property_value: axiom_lost_from_external_ontology "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (UBERON:0001004)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO"} property_value: external_definition "A funnel-shaped fibromuscular tube that conducts food to the ESOPHAGUS, and air to the LARYNYX and LUNGS. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH:A03.867]." xsd:string {source="MESH:A03.867"} property_value: external_definition "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO", source="AAO:EJS"} property_value: external_definition "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000056", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA:0000056, ZFIN:ZDB-PUB-961014-576]." xsd:string {source="ZFIN:ZDB-PUB-961014-576"} property_value: external_definition "The portion of the alimentary canal between the mouth and the oesophagus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000462", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_ontology_notes "MA/FMA pharynx not part of digestive/alimentary system, we are consistent with this scheme" xsd:string {external_ontology="MA"} property_value: homology_notes "(...) the earliest vertebrates possessed unjointed internal and external branchial arches, and musculature encircling the pharynx.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000462", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) Box essay 13.1 and Box figure I, p.502-503", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001043 name: esophagus def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [http://www.rivm.nl/interspeciesinfo/inter/oesophagus/, Wikipedia:Esophagus] subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "gullet" EXACT [] synonym: "oesophagus" EXACT [] xref: AAO:0000145 xref: ANISEED:1235301 xref: BTO:0000959 xref: CALOHA:TS-0700 xref: EFO:0000835 xref: EHDAA2:0001285 xref: EHDAA:2937 xref: EMAPA:16833 xref: EV:0100069 xref: FMA:7131 xref: GAID:291 xref: galen:Esophagus xref: MA:0000352 xref: MAT:0000048 xref: MESH:D004947 xref: MIAA:0000048 xref: NCIT:C12389 xref: SCTID:181245004 xref: TAO:0000204 xref: UMLS:C0014876 {source="ncithesaurus:Esophagus"} xref: VHOG:0000450 xref: Wikipedia:Esophagus xref: XAO:0000127 xref: ZFA:0000204 is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0004908 ! upper digestive tract relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg" xsd:anyURI property_value: external_definition "Anterior end of the alimentary canal lined with smooth muscle. Bounded anteriorly by a constriction in the pharynx. Bounded posteriorly by and increase in circular and/or longitudinal smooth muscle associated with the stomach.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000145", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies: The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995)" xsd:string {external_ontology="MA"} property_value: has_relational_adjective "esophageal" xsd:string property_value: homology_notes "The few structural specializations in (adult lampreys) pharynx include complex valves on the external gill openings that direct the tidal flow, and the division of the ancestral pharynx into an oesophagus and a respiratory pharynx.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000450", ontology="VHOG", source="DOI:10.1111/j.1096-3642.1996.tb01658.x Mallatt J, Ventilation and the origin of jawed vertebrates: a new mouth. Zoological Journal of the Linnean Society (1996)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001044 name: saliva-secreting gland def: "Saliva-secreting exocrine glands of the oral cavity[GO]." [GO:0007431, Wikipedia:Salivary_gland] subset: efo_slim subset: functional_classification subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "glandulae salivariae" RELATED OMO:0003011 [Wikipedia:Salivary_gland] synonym: "salivary gland" EXACT [MA:0000346] xref: BTO:0001203 xref: CALOHA:TS-0892 xref: EFO:0000859 xref: EHDAA2:0001775 xref: EHDAA:7987 xref: EMAPA:17751 xref: EV:0100059 xref: FBbt:00005382 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9597 xref: GAID:937 xref: galen:SalivaryGland xref: MA:0000346 xref: MAT:0000079 xref: MESH:D012469 xref: MIAA:0000079 xref: NCIT:C12426 xref: SCTID:181236000 xref: UMLS:C0036098 {source="ncithesaurus:Salivary_Gland"} xref: VHOG:0000376 xref: Wikipedia:Salivary_gland is_a: UBERON:0010047 ! oral gland relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals." xsd:string {source="3"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg" xsd:anyURI property_value: external_definition "A gland that produces the saliva. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000376", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "In air-feeding animals, the lack of water column to lubricate the food has been compensated for by the evolution of the salivary glands. These glands are present only in amniotes and are controlled by the parasympathetic system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000376", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptationm(2005) p.211", source="http://bgee.unil.ch/"} property_value: taxon_notes "The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research. The salivary glands of some species are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands" xsd:string [Term] id: UBERON:0001045 name: midgut def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]." [GO:0007494, Wikipedia:Midgut] subset: developmental_classification subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "mesenteron" RELATED OMO:0003011 [Wikipedia:Midgut] xref: BILA:0000086 xref: BTO:0000863 xref: EFO:0001950 xref: EHDAA2:0001185 xref: EHDAA:983 xref: EMAPA:16255 xref: FBbt:00005383 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45617 xref: MA:0001564 xref: NCIT:C34210 xref: SCTID:361410004 xref: TGMA:0001036 xref: UMLS:C0231052 {source="ncithesaurus:Midgut"} xref: VHOG:0000290 xref: Wikipedia:Midgut xref: XAO:0000103 is_a: UBERON:0004921 ! subdivision of digestive tract property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg" xsd:anyURI property_value: editor_note "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. We may explicitly make this a developmental class" xsd:string property_value: external_ontology_notes "in FMA this represents an embryonic region." xsd:string {external_ontology="FMA"} property_value: homology_notes "The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000290", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.203, ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon" xsd:string {source="WP"} [Term] id: UBERON:0001046 name: hindgut def: "The caudalmost subdivision of a digestive tract." [http://orcid.org/0000-0002-6601-2165] subset: developmental_classification subset: pheno_slim subset: uberon_slim synonym: "metenteron" RELATED OMO:0003011 [Wikipedia:Hindgut] xref: AAO:0011052 xref: BILA:0000087 xref: BTO:0000510 xref: EHDAA2:0000779 xref: EHDAA:975 xref: EMAPA:16715 xref: FBbt:00005384 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45618 xref: MA:0001527 xref: NCIT:C34188 xref: SCTID:362856002 xref: TGMA:0001020 xref: UMLS:C0231053 {source="ncithesaurus:Hindgut"} xref: VHOG:0000459 xref: Wikipedia:Hindgut xref: XAO:0000104 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png" xsd:anyURI property_value: editor_note "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future (vertebrates have some contribution from NC - https://github.com/obophenotype/uberon/wiki/The-neural-crest). We may explicitly make this a developmental class" xsd:string property_value: external_definition "the caudal portion of the primitive digestive tube of the embryo" xsd:string {source="MP:0008786"} property_value: external_ontology_notes "in FMA this class has no children. In MA it has a single child hindgut epithelium" xsd:string {external_ontology="FMA"} property_value: homology_notes "The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000459", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.203, ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001047 name: neural glomerulus def: "A large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets." [DOI:10.1016/B978-0-12-374245-2.00007-3, ILX:0728797] subset: uberon_slim synonym: "glomerulus" BROAD [FBbt:00005386] xref: FBbt:00005386 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: ILX:0728797 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002606 ! neuropil [Term] id: UBERON:0001048 name: primordium def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt, Hartenstein, V. (2004)]." [BTO:0001886, FB:DJS, FB:FBrf0089570, http://flybase.org/reports/FBrf0178740.html] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "bud" RELATED [] synonym: "future organ" RELATED [] synonym: "placode" RELATED [FBbt:00005495] synonym: "primordia" RELATED OMO:0003004 [XAO:0003043] synonym: "rudiment" RELATED [] xref: AEO:0000171 xref: BTO:0001886 xref: EFO:0001652 xref: EHDAA2:0003171 xref: FBbt:00005495 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:86589 xref: MAT:0000482 xref: NCIT:C34275 xref: UMLS:C0678727 {source="ncithesaurus:Primordium"} xref: Wikipedia:Primordium xref: XAO:0003043 is_a: UBERON:0005423 {source="EHDAA2"} ! developing anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0001049 name: neural tube def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [Wikipedia:Neural_tube] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "neural primordium" RELATED [] synonym: "presumptive central nervous system" RELATED [] synonym: "tubus neuralis" RELATED OMO:0003011 [Wikipedia:Neural_tube] xref: AAO:0010617 xref: BTO:0001057 xref: CALOHA:TS-2371 xref: DHBA:10154 xref: EHDAA2:0001254 xref: EHDAA:2869 xref: EHDAA:908 xref: EMAPA:16164 xref: EMAPA:16757 xref: FMA:293882 xref: MAT:0000069 xref: MESH:D054259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000069 xref: NCIT:C34226 xref: neuronames:1365 xref: SCTID:362852000 xref: TAO:0001135 xref: UMLS:C0231024 {source="ncithesaurus:Neural_Tube"} xref: VHOG:0000307 xref: Wikipedia:Neural_tube xref: XAO:0003204 xref: ZFA:0001135 is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0016879 ! future central nervous system relationship: develops_from UBERON:0005068 ! neural rod property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI property_value: development_notes "The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium" xsd:string {source="GO:0021915"} property_value: external_definition "Hollow epithelial tube on dorsal side of the embryo that develops into the central nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010617", ontology="AAO", source="AAO:JOR"} property_value: external_definition "The dorsal tubular structure in the vertebrate embryo that develops into the brain and spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000307", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/neural+tube"} property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000307", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001050 name: obsolete atrium comment: obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium is_obsolete: true consider: FMA:85574 consider: UBERON:0002081 [Term] id: UBERON:0001051 name: hypopharynx def: "Bottom part of the pharynx that connects to the esophagus." [Wikipedia:Hypopharynx] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "laryngeal pharynx" EXACT [FMA:54877] synonym: "laryngopharynx" EXACT [FMA:54877] synonym: "pars laryngea pharyngis" RELATED OMO:0003011 [BTO:0001740, Wikipedia:Hypopharynx] xref: BTO:0001740 xref: CALOHA:TS-2020 xref: EFO:0001388 xref: EHDAA2:0004574 xref: EV:0100068 xref: FMA:54880 xref: GAID:338 xref: MA:0001796 xref: MESH:D007013 xref: NCIT:C12246 xref: SCTID:281490009 xref: UMLS:C0020629 {source="ncithesaurus:Hypopharynx"} xref: VHOG:0000445 xref: Wikipedia:Hypopharynx is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg" xsd:anyURI property_value: external_definition "The inferior portion of the pharynx, between the epiglottis and the larynx. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000445", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/hypopharynx"} property_value: has_relational_adjective "hypopharyngeal" xsd:string [Term] id: UBERON:0001052 name: rectum def: "The terminal portion of the intestinal tube, terminating with the anus." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MP:0000492] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "intestinum rectum" RELATED [BTO:0001158] synonym: "rectal sac" RELATED [] synonym: "terminal portion of intestine" EXACT [] synonym: "terminal portion of large intestine" RELATED [] xref: AAO:0010401 xref: BTO:0001158 xref: CALOHA:TS-1180 xref: EFO:0000848 xref: EHDAA2:0001592 xref: EHDAA:5836 xref: EMAPA:17896 xref: EV:0100081 xref: FMA:14544 xref: GAID:311 xref: galen:Rectum xref: MA:0000336 xref: MAT:0000050 xref: MESH:D012007 xref: MIAA:0000050 xref: NCIT:C12390 xref: SCTID:181261002 xref: UMLS:C0034896 {source="ncithesaurus:Rectum"} xref: VHOG:0001751 xref: Wikipedia:Rectum xref: XAO:0000238 is_a: UBERON:0004921 {order="4", source="cjm"} ! subdivision of digestive tract relationship: part_of UBERON:0000059 {source="MA"} ! large intestine relationship: part_of UBERON:0006866 ! terminal part of digestive tract relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: external_definition "The terminal portion of the large intestine between the ileo-pelvic colon and the anus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001751", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "rectal" xsd:string property_value: taxon_notes "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html" xsd:string [Term] id: UBERON:0001053 name: arthropod neurohemal organ def: "A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system." [BTO:0002106] comment: brain areas from which substances enter blood for example, the neurohypophysis from which oxytocin and vasopressin enter blood. subset: efo_slim subset: organ_slim synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 xref: EFO:0000864 xref: FBbt:00005757 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000212 xref: MIAA:0000212 is_a: UBERON:0010133 ! neuroendocrine gland relationship: part_of UBERON:0001016 {source="BTO"} ! nervous system property_value: external_ontology_notes "currently intended for invert structure; alt definitions include: organs in which intimate relationships between axons and terminal blood vessels are established" xsd:string [Term] id: UBERON:0001054 name: Malpighian tubule def: "A tubule that extends from the posterior part of the digestive tract which absorbs solutes, water, and wastes from the surrounding hemolymph. Each tubule consists of a single layer of cells that is closed off at the distal end with the proximal end joining the alimentary canal at the junction between the midgut and hindgut[WP,modified]." [Wikipedia:Malpighian_tubule_system] comment: EDITOR_NOTE this will be ceded to the Arthropod Anatomy Ontology subset: efo_slim subset: uberon_slim synonym: "Malphigian tube" RELATED MISSPELLING [BTO:0000810] synonym: "Malpighian tube" RELATED [UBERON:cjm] synonym: "tuba Malpighii" RELATED [BTO:0000810] xref: BTO:0000810 xref: EFO:0000243 xref: FBbt:00005786 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1228 xref: MAT:0000123 xref: MESH:D008317 xref: MIAA:0000123 xref: SCTID:41055008 xref: TADS:0000163 xref: TGMA:0001038 xref: Wikipedia:Malpighian_tubule is_a: UBERON:0009773 {source="GO"} ! renal tubule property_value: taxon_notes "It is unclear as to whether the Malpighian tubules of arachnids and those of the Uniramia are homologous or the result of convergent evolution.[Wikipedia:Malpighian_tubule_system]" xsd:string [Term] id: UBERON:0001055 name: obsolete ureter is_obsolete: true consider: UBERON:0000056 consider: UBERON:0000057 [Term] id: UBERON:0001056 name: corpus cardiacum def: "One of a pair of neurohemal organs located on the walls of the aorta just behind the brain. The corpora cardiaca release their store of PTTH only after they receive a signal from neurosecretory cells in the brain." [BTO:0000432, http://en.wikipedia.org/wiki/Corpus_cardiacum#Endocrine_system, http://www.cals.ncsu.edu/course/ent425/tutorial/endocrine.html] comment: will be ceded to arthropod anatomy ontology subset: efo_slim synonym: "corpora cardiaca" RELATED OMO:0003004 [BTO:0000432] xref: BTO:0000432 xref: EFO:0000380 xref: FBbt:00005799 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000211 xref: MIAA:0000211 is_a: UBERON:0001053 ! arthropod neurohemal organ relationship: part_of UBERON:0012325 {source="BTO-modified"} ! retrocerebral complex [Term] id: UBERON:0001057 name: corpus allatum def: "One of a pair of separate or fused bodies in many insects that are sometimes closely associated with the corpora cardiaca and that secrete hormones (as juvenile hormone)[BTO]." [BTO:0000291, http://en.wikipedia.org/wiki/Corpora_allata, http://www.cals.ncsu.edu/course/ent425/tutorial/endocrine.html] comment: will be ceded to arthropod anatomy ontology subset: efo_slim subset: uberon_slim synonym: "corpora allata" RELATED OMO:0003004 [BTO:0000291] xref: BTO:0000291 xref: EFO:0000379 xref: FBbt:00005800 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000210 xref: MESH:D003335 xref: MIAA:0000210 is_a: UBERON:0002368 {source="BTO"} ! endocrine gland relationship: part_of UBERON:0012325 {source="BTO-modified"} ! retrocerebral complex property_value: taxon_notes "In Lepidoptera species, the corpus allatum acts as a release site for prothoracicotropic hormone which is generated by the brain" xsd:string property_value: taxon_notes "In many Diptera species, the corpus allatum is fused with the corpus cardiacum, forming Weismann's ring" xsd:string [Term] id: UBERON:0001058 name: mushroom body def: "Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, MESH:A13.641, Wikipedia:Mushroom_body] subset: efo_slim subset: uberon_slim synonym: "corpora pedunculata" RELATED [FBbt:00005801, PMID:21062451] synonym: "mushroom bodies" EXACT OMO:0003004 [] xref: BTO:0002675 xref: EFO:0000925 xref: FBbt:00005801 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1231 xref: MAT:0000336 xref: MESH:D024521 xref: MIAA:0000336 xref: Wikipedia:Mushroom_body is_a: UBERON:0000477 ! anatomical cluster relationship: never_in_taxon NCBITaxon:6217 relationship: part_of UBERON:0000955 ! brain relationship: present_in_taxon NCBITaxon:6340 relationship: present_in_taxon NCBITaxon:6656 property_value: taxon_notes "Also in annelids. 'Comparison to the vertebrate pallium reveals that the annelid mushroom bodies develop from similar molecular coordinates within a conserved overall molecular brain topology and that their development involves conserved patterning mechanisms and produces conserved neuron types that existed already in the proto- stome-deuterostome ancestors. These data indicate deep homology of pallium and mushroom bodies and date back the origin of higher brain centers to prebilaterian times'" xsd:string {source="PMID:20813265"} [Term] id: UBERON:0001059 name: pars intercerebralis def: "A neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]." [http://en.wiktionary.org/wiki/pars_intercerebralis, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: will be ceded to arthropod anatomy ontology subset: efo_slim subset: uberon_slim xref: EFO:0000926 xref: FBbt:00005802 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000337 xref: MIAA:0000337 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000955 {source="FBbt"} ! brain [Term] id: UBERON:0001062 name: anatomical entity def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level xref: AAO:0010841 xref: AEO:0000000 xref: BFO:0000004 xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 xref: FBbt:10000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:62955 xref: HAO:0000000 xref: MA:0000001 xref: NCIT:C12219 xref: TAO:0100000 xref: TGMA:0001822 xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"} xref: WBbt:0000100 xref: XAO:0000000 xref: ZFA:0100000 relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0001063 name: flocculus def: "The small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule that receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance." [http://orcid.org/0000-0002-6601-2165, ISBN:0838580343, MGI:csmith, MP:0010006, Wikipedia:Flocculus_(cerebellar)] subset: pheno_slim subset: uberon_slim synonym: "flocculus of cerebellum" EXACT [FMA:83881] synonym: "H X" RELATED [FMA:83881] synonym: "hemispheric lobule X" RELATED INCONSISTENT [NLXANAT:20081213] synonym: "lobule H X of Larsell" RELATED [FMA:83881] synonym: "lobule X" RELATED [FMA:83881] synonym: "lobule X of hemisphere of cerebellum" RELATED [FMA:83881] synonym: "neuraxis flocculus" EXACT [FMA:83881] xref: BAMS:FL xref: BAMS:Fl xref: BIRNLEX:1329 xref: DMBA:16946 xref: EMAPA:35346 xref: FMA:83881 xref: HBA:12945 xref: MA:0000992 xref: MBA:1049 xref: neuronames:680 xref: SCTID:279368002 xref: SCTID:30711003 xref: Wikipedia:Flocculus_(cerebellar) is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion relationship: mutually_spatially_disjoint_with UBERON:0005347 {source="ABA"} ! copula pyramidis relationship: mutually_spatially_disjoint_with UBERON:0005348 {source="ABA"} ! ansiform lobule relationship: mutually_spatially_disjoint_with UBERON:0005349 {source="ABA"} ! paramedian lobule relationship: mutually_spatially_disjoint_with UBERON:0005350 {source="ABA"} ! lobule simplex relationship: mutually_spatially_disjoint_with UBERON:0005351 {source="ABA"} ! paraflocculus property_value: external_ontology_notes "flocculus is an exact label for two distinct classes in NIF." xsd:string {external_ontology="NIF"} property_value: function_notes "At its base, the flocculus receives input from the middle ears vestibular system and regulates balance. Many floccular projections descend to the spinal cord and connect to the motor nuclei involved in control of eye movement." xsd:string {source="WP"} property_value: taxon_notes "enlarged in pterosaurs" xsd:string {source="PMID:14586467"} [Term] id: UBERON:0001064 name: ventral pancreatic duct alt_id: UBERON:0005627 def: "A duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct] comment: EDITOR_NOTE in EHDAA2 this is an epithelium, in FMA the wall consists of epithelium and connective tissue subset: human_reference_atlas subset: uberon_slim synonym: "canal of Wirsung" RELATED [BTO:0002362] synonym: "chief pancreatic duct" EXACT [FMA:16003] synonym: "duct of Wirsung" EXACT [Wikipedia:Pancreatic_duct] synonym: "ductus pancreatis ventralis" RELATED [] synonym: "hepaticopancreatic duct" RELATED [BTO:0002362] synonym: "main pancreatic duct" EXACT [MA:0000126] synonym: "pancreatic duct" BROAD [MESH:A03.734.667] xref: BTO:0002362 xref: EHDAA2:0001396 xref: EHDAA:6905 xref: EMAPA:17510 xref: FMA:16003 xref: GAID:337 xref: MA:0000126 xref: MESH:D010183 xref: NCIT:C12272 xref: RETIRED_EHDAA2:0002177 xref: SCTID:245385001 xref: UMLS:C0030288 {source="ncithesaurus:Pancreatic_Duct"} xref: VHOG:0000256 xref: Wikipedia:Pancreatic_duct is_a: UBERON:0000025 ! tube is_a: UBERON:0007329 {source="FMA"} ! pancreatic duct relationship: develops_from UBERON:0003924 {source="EHDAA2"} ! ventral pancreatic bud relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png" xsd:anyURI property_value: development_notes "Upon reaching its final destination, the ventral pancreatic bud fuses with the much larger dorsal pancreatic bud. At this point of fusion, the main ducts of the ventral and dorsal pancreatic buds fuse, forming the duct of Wirsung, the main pancreatic duct." xsd:string {source="WP"} property_value: homology_notes "These data show that ducts within the zebrafish pancreas originally arise in situ from isolated progenitor cells rather than arising from reiterative branching of the pancreatic epithelium. This process of pancreatic duct formation in zebrafish may be analogous to the mechanism of duct formation in the mammalian mammary and salivary glands. (...) A related mechanism of duct formation has also been proposed to occur within the mammalian pancreatic epithelium.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000256", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.04.035 Yee NS, Lorent K, Pack M, Exocrine pancreas development in zebrafish. Developmental Biology (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001065 name: parotid main excretory duct def: "The main excretory tubular canal that connects the parotid gland and the buccal mucosa and secretes a serous saliva into the vestibule of the oral cavity; it arises from the anterior surface of the gland, traversing the masseter muscle; the duct then pierces the buccinator muscle, moving medially, and opens out into the oral cavity near the second upper molar; saliva produced by acinar secretory cells in the glandular body flows sequentially through the intercalated ducts, striated ducts, and excretory ducts." [MP:0009530] comment: EDITOR_NOTE we follow MP in identifying the 'parotid duct' with the main excretory duct, although in fact the parotid has many other ducts of different types subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "duct of parotid" BROAD [OBOL:automatic] synonym: "duct of parotid gland" BROAD [] synonym: "ductus parotideus" RELATED OMO:0003011 [Wikipedia:Parotid_duct] synonym: "ductus stenonianus" RELATED OMO:0003011 [BTO:0004554] synonym: "excretory duct of parotid gland" BROAD [] synonym: "main duct of parotid gland" EXACT [] synonym: "main excretory duct of parotid gland" EXACT [] synonym: "parotid duct" BROAD [MA:0002697] synonym: "parotid excretory duct" BROAD [] synonym: "parotid gland duct" BROAD [OBOL:automatic] synonym: "Stenon duct" EXACT [] synonym: "stenonianus" RELATED [BTO:0004554] synonym: "Stensen's duct" EXACT [] synonym: "Stensens's duct" EXACT [] xref: BTO:0004554 xref: EMAPA:36563 xref: FMA:10420 xref: MA:0002697 xref: NCIT:C33277 xref: SCTID:362175009 xref: UMLS:C0227458 {source="ncithesaurus:Parotid_Duct"} xref: Wikipedia:Parotid_duct is_a: UBERON:0035048 ! parotid gland excretory duct relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1023.png" xsd:anyURI [Term] id: UBERON:0001066 name: intervertebral disk def: "A pad of fibrocartilage between the articular surfaces of two successive vertebral centra which has nucleus pulposus at its core." [ISBN:0073040584, Wikipedia:Intervertebral_disk] comment: whose gel-like core is nucleus puloposus, by this definition only in mammals subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "discus intervertebralis" EXACT OMO:0003011 [FMA:10446, FMA:TA] synonym: "intervertebral disc" EXACT [] synonym: "intervertebral fibrocartilage" RELATED [BTO:0003625] synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc] synonym: "spinal disk" RELATED [BTO:0003625] xref: BTO:0003625 xref: EFO:0001370 xref: EMAPA:32739 xref: FMA:10446 xref: GAID:105 xref: MA:0000110 xref: MESH:D007403 xref: NCIT:C49571 xref: SCTID:244570000 xref: UMLS:C0021815 {source="ncithesaurus:Intervertebral_Disc"} xref: Wikipedia:Intervertebral_disk is_a: UBERON:0011135 ! intervertebral cartilage property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray301.png" xsd:anyURI property_value: taxon_notes "strictly speaking the term intervertebral disk [applies to intervertebral cartilage]" xsd:string [Term] id: UBERON:0001067 name: vertebral arch joint def: "A synovial joint between the prezygapophysis of one vertebra and the postzygapophysis of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Zygapophysial_joint] subset: pheno_slim subset: uberon_slim synonym: "articulationes zygapophysiales" RELATED OMO:0003011 [Wikipedia:Zygapophysial_joint] synonym: "facet joint" EXACT [] synonym: "joint of vertebral arch" EXACT [] synonym: "joint of vertebral articular process" EXACT [] synonym: "spinal facet joint" EXACT [HP:0008482] synonym: "zygapophyseal joint" EXACT [] synonym: "zygapophysial joint" EXACT [] xref: FMA:10447 xref: GAID:275 xref: MA:0001513 xref: MESH:D021801 xref: NCIT:C32577 xref: SCTID:89836005 xref: UMLS:C0224521 {source="ncithesaurus:Facet_Joint"} xref: Wikipedia:Zygapophysial_joint is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0003861 ! neural arch property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray90.png" xsd:anyURI [Term] id: UBERON:0001068 name: skin of back def: "A zone of skin that is part of a back [Automatically generated definition]." [OBOL:automatic] comment: EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region subset: pheno_slim synonym: "back skin" EXACT [] synonym: "back zone of skin" EXACT [OBOL:automatic] synonym: "skin, dorsal region" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "zone of skin of back" EXACT [OBOL:automatic] xref: EMAPA:36392 xref: FMA:10462 xref: FMA:22985 xref: MA:0000498 xref: SCTID:181492002 is_a: UBERON:0001085 {source="MA"} ! skin of trunk relationship: part_of UBERON:0011270 {source="MA"} ! dorsal trunk [Term] id: UBERON:0001069 name: head of pancreas def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [Wikipedia:Head_of_pancreas] subset: human_reference_atlas subset: uberon_slim synonym: "caput pancreatis" RELATED OMO:0003011 [Wikipedia:Head_of_pancreas] synonym: "pancreas head" EXACT [] synonym: "pancreatic head" EXACT [] synonym: "right extremity of pancreas" EXACT [] xref: EHDAA2:0001374 xref: EMAPA:17507 xref: FMA:10468 xref: MA:0000122 xref: NCIT:C12269 xref: SCTID:362201006 xref: UMLS:C0227579 {source="ncithesaurus:Head_of_the_Pancreas"} xref: VHOG:0000448 xref: Wikipedia:Head_of_pancreas is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0003924 {source="EHDAA2-inferred", source="WP"} ! ventral pancreatic bud relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000448", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001070 name: external carotid artery def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to to the throat, neck glands, tongue, face, mouth, ear, scalp and dura mater of the meninges[MP]." [MGI:anna] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria carotis externa" RELATED OMO:0003011 [Wikipedia:External_carotid_artery] synonym: "external carotid" EXACT [AAO:0010218] xref: AAO:0010218 xref: AAO:0010416 xref: BTO:0004696 xref: EFO:0001953 xref: EHDAA2:0000461 xref: EMAPA:18611 xref: FMA:10635 xref: GAID:480 xref: MA:0001929 xref: MESH:D002342 xref: NCIT:C32551 xref: SCTID:362044002 xref: UMLS:C0007275 {source="ncithesaurus:External_Carotid_Artery"} xref: VHOG:0000265 xref: Wikipedia:External_carotid_artery xref: XAO:0000345 is_a: UBERON:0005396 {source="MA"} ! carotid artery segment relationship: develops_from UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/13/External_carotid_a.gif" xsd:anyURI property_value: seeAlso "https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722" xsd:anyURI property_value: taxon_notes "not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO" xsd:string [Term] id: UBERON:0001071 name: superficial cervical artery def: "It ascends beneath the anterior margin of the trapezius, distributing branches to it, and to the neighboring muscles and lymph glands in the neck, and anastomosing with the superficial branch of the descending branch of the occipital artery." [Wikipedia:Superficial_part_of_transverse_cervical_artery] comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] subset: human_reference_atlas subset: uberon_slim synonym: "superficial branch of transverse cervical artery" EXACT [Wikipedia:Superficial_part_of_transverse_cervical_artery] xref: EMAPA:37117 {source="MA:th"} xref: FMA:10665 xref: MA:0002052 xref: NCIT:C53005 xref: SCTID:161746006 xref: UMLS:C0226271 {source="ncithesaurus:Superficial_Cervical_Artery"} xref: Wikipedia:Superficial_part_of_transverse_cervical_artery is_a: UBERON:0012320 ! cervical artery relationship: part_of UBERON:0035549 ! vasculature of integument relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001072 name: inferior vena cava def: "A vein that carries deoxygenated blood from the lower half of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Inferior_vena_cava] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "caudal vena cava" RELATED [VHOG:0001194] synonym: "inferior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "postcava" RELATED [] synonym: "posterior vena cava" EXACT [PMID:21154280] synonym: "vena cava inferior" RELATED OMO:0003011 [BTO:0002682, Wikipedia:Inferior_vena_cava] xref: AAO:0011083 xref: BTO:0002682 xref: EHDAA2:0000611 xref: EMAPA:18416 xref: FMA:10951 xref: GAID:548 xref: galen:InferiorVenaCava xref: MA:0000480 xref: MESH:D014682 xref: NCIT:C12815 xref: SCTID:181369003 xref: UMLS:C0042458 {source="ncithesaurus:Inferior_Vena_Cava"} xref: VHOG:0001194 xref: Wikipedia:Inferior_vena_cava xref: XAO:0000388 is_a: UBERON:0004087 ! vena cava relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png" xsd:anyURI property_value: external_definition "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium[FMA]." xsd:string {source="FMA:10951"} property_value: homology_notes "Phylogenetic modifications within this basic pattern of arteries and veins are largely correlated with functional changes. In the transition from water to land, gills gave way to lungs, accompanied by the establishment of a pulmonary circulation. In some fishes and certainly in tetrapods, the cardinal veins become less involved in blood return. Instead, the composite, prominent postcava (posterior vena cava) arose to drain the posterior part of the body and the precava (anterior vena cava) developed to drain the anterior part of the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001194", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.454-455", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001073 name: ileocecal junction def: "A point along the course of the gastrointestinal tract where the small intestine (ileum) ends as it opens into the cecal portion of the large intestine; occurs usually within the iliac fossa, demarcated internally as the ileocecal orifice." [http://www.medilexicon.com/medicaldictionary.php?t=46539] synonym: "ileocaecal junction" EXACT [] xref: EMAPA:37601 {source="MA:th"} xref: FMA:11338 xref: MA:0000332 xref: SCTID:264021000 is_a: UBERON:8410024 ! intestinal junction [Term] id: UBERON:0001074 name: pericardial cavity def: "A potential space between the visceral and parietal layers of the pericardium." [Wikipedia:Pericardium] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cavitas pericardiaca" RELATED OMO:0003011 [Wikipedia:Pericardial_cavity] synonym: "cavity of pericardial sac" EXACT [] synonym: "pericardial space" EXACT [Wikipedia:Pericardial_cavity] xref: BSA:0000091 xref: EHDAA2:0001434 xref: EMAPA:16131 xref: EMAPA:16132 xref: FMA:11350 xref: galen:PericardialSpace xref: MA:0000053 xref: NCIT:C38662 xref: SCTID:362027001 xref: TAO:0002220 xref: UMLS:C0225972 {source="ncithesaurus:Pericardial_Cavity"} xref: VHOG:0000556 xref: Wikipedia:Pericardial_cavity xref: ZFA:0001655 is_a: UBERON:0002323 {source="MA"} ! coelemic cavity lumen is_a: UBERON:0035809 ! serous cavity relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac property_value: external_definition "Anatomical space in which the heart is located and is surrounded by the pericardium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002220", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "check ZFA, should actually be thoracic cavity. Note that Hyman defines the cavity as the space between the heart and the sac (but defines the sac as parietal)" xsd:string {external_ontology="ZFA"} property_value: homology_notes "In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart (of other tetrapods) is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000556", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.205-206", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001075 name: bony vertebral centrum def: "Ossified form of a vertebral centrum, a skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, VSAO:0000183, VSAO:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arcocentrum" NARROW INCONSISTENT [PMID:11746457] synonym: "autocentrum" NARROW [PMID:11746457, ZFA:0000126] synonym: "body of vertebra" EXACT [FMA:11945] synonym: "centra" RELATED OMO:0003004 [PHENOSCAPE:ad] synonym: "corpus vertebra" EXACT OMO:0003011 [] synonym: "corpus vertebrae" RELATED OMO:0003004 [Wikipedia:Body_of_vertebra] synonym: "corpus vertebrae (vertebrale)" EXACT [FMA:11945] synonym: "holocentrum" NARROW [PMID:11746457] synonym: "vertebral body" EXACT [FMA:11945] synonym: "vertebral centra" RELATED OMO:0003004 [PHENOSCAPE:ad] synonym: "vertebral centrum" RELATED [MA:0001457] xref: AAO:0000697 xref: EMAPA:36588 xref: FMA:11945 xref: MA:0001457 xref: NCIT:C12852 xref: SCTID:361745008 xref: SCTID:362867001 xref: TAO:0000126 xref: UMLS:C0223084 {source="ncithesaurus:Vertebral_Body"} xref: Wikipedia:Body_of_vertebra xref: ZFA:0000126 is_a: UBERON:0001474 ! bone element is_a: UBERON:0016491 ! vertebral centrum element relationship: part_of UBERON:0002412 ! vertebra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Corpusvertebrae.png" xsd:anyURI property_value: external_comment "The vertebral centrum may be cartilaginous, develop as cartilage but be replaced by bone or mineralized, or form directly through intramembranous ossification.[VSAO]" xsd:string {date_retrieved="2012-09-06", external_class="VSAO:0000183", ontology="VSAO", source="Curator"} property_value: external_definition "Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999).[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000126", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Cylindrical body of bone, round or oval in cross section, which functionally replaces the notochord.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000697", ontology="AAO", source="AAO:Duellman_and_Trueb_2008"} property_value: external_definition "The body is the largest part of a vertebra, and is more or less cylindrical in shape. Its upper and lower surfaces are flattened and rough, and give attachment to the intervertebral fibrocartilages, and each presents a rim around its circumference. In front, the body is convex from side to side and concave from above downward. Behind, it is flat from above downward and slightly concave from side to side. Its anterior surface presents a few small apertures, for the passage of nutrient vessels. On the posterior surface is a single large, irregular aperture, or occasionally more than one, for the exit of the basi-vertebral veins from the body of the vertebra. [WP,unvetted][Wikipedia:Body_of_vertebra]." xsd:string {source="Wikipedia:Body_of_vertebra"} property_value: external_ontology_notes "VSAO definition states it surrounds notochord but not applicable to post-natal." xsd:string {external_ontology="VSAO"} [Term] id: UBERON:0001076 name: neural spine def: "An extension of a neural arches dorsal to the neural canal[TAO,modified]." [http://orcid.org/0000-0002-6601-2165, TAO:0001336] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "neural spine" RELATED [] synonym: "neural spines" RELATED OMO:0003004 [ZFA:0001336] synonym: "processus spinosus" EXACT [] synonym: "processus spinosus vertebrae" EXACT [] synonym: "spine of verterba" RELATED [FMA:11948] synonym: "spinous process" BROAD [] synonym: "spinous process of vertebra" EXACT HUMAN_PREFERRED [FMA:11948] synonym: "vertebra spinous process" EXACT [MA:0001455] xref: AAO:0000705 xref: EMAPA:25107 xref: FMA:11948 xref: MA:0001455 xref: NCIT:C116112 xref: SCTID:264259004 xref: TAO:0001336 xref: Wikipedia:Spinous_process xref: ZFA:0001336 is_a: UBERON:0006061 ! process of vertebra relationship: part_of UBERON:0003861 ! neural arch property_value: axiom_lost_from_external_ontology "relationship loss: part_of mid-dorsal keel (AAO:0000735)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000705", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/48/Processusspinosusvertebrae.png" xsd:anyURI property_value: external_definition "Elaboration of the mid-dorsal keel into a posterior or posterolateral process.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000705", ontology="AAO", source="AAO:Pugener_and_Maglia_2008"} property_value: external_definition "Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon).[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001336", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Small, posteriorly directed process at the posterior margin of each neural arch lamina; it is not a neural spine.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000739", ontology="AAO", source="AAO:Pugener_2002"} property_value: taxon_notes "The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [Wikipedia:Spinous_process]" xsd:string [Term] id: UBERON:0001077 name: transverse process of vertebra def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [Wikipedia:Transverse_process] subset: pheno_slim subset: uberon_slim synonym: "diapophyses" RELATED [] synonym: "diapophysis" RELATED [] synonym: "processus transversus" EXACT [] synonym: "processus transversus vertebrae" EXACT [] synonym: "transverse process" EXACT [] synonym: "vertebra transverse process" EXACT [] xref: AAO:0000698 xref: FMA:11949 xref: MA:0001456 xref: SCTID:264238006 xref: Wikipedia:Transverse_process xref: XAO:0003102 is_a: UBERON:0006061 ! process of vertebra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Processustransversusvertebrae.PNG" xsd:anyURI property_value: external_definition "Projections on each side of the vertebra from the point where the neural arch lamina joins the pedicel for the articulation with the head of a single-headed rib or the upper head of a double-headed rib. Also called diapophyses. They provide surfaces for the attachment of muscles. In anurans, the term transverse process is used in reference to the processes associated with the presacral and postsacral vertebrae." xsd:string {source="AAO:0000698"} [Term] id: UBERON:0001078 name: pedicle of vertebra def: "The two short, thick processes, which project backward, one on either side, from the upper part of the body to the laminae." [ISBN:0-683-40008-8, MGI:csmith, MP:0004604] subset: pheno_slim subset: uberon_slim synonym: "pedicle" BROAD [] synonym: "pedicle of vertebral arch" EXACT [FMA:11950] synonym: "pediculus arcus vertebrae" EXACT OMO:0003011 [FMA:TA] synonym: "pediculus arcus vertebrae" RELATED OMO:0003011 [Wikipedia:Pedicle_of_vertebral_arch] synonym: "radix arcus vertebrae" RELATED OMO:0003011 [Wikipedia:Pedicle_of_vertebral_arch] synonym: "vertebra pedicle" EXACT [] synonym: "vertebral pedicle" EXACT [FMA:11950] xref: FMA:11950 xref: MA:0001458 xref: NCIT:C96274 xref: SCTID:277422007 xref: UMLS:C0223080 {source="ncithesaurus:Pedicle_of_Vertebral_Arch"} xref: Wikipedia:Pedicle_of_vertebral_arch is_a: UBERON:0006061 ! process of vertebra relationship: part_of UBERON:0003861 ! neural arch property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d0/Pediculusarcusvertebrae.png" xsd:anyURI [Term] id: UBERON:0001079 name: prezygapophysis def: "Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra." [AAO:Pugener_and_Maglia_2008] comment: EDITOR_NOTE TODO - add distinct classes for hemal vs neural? subset: vertebrate_core synonym: "cranial articular process of vertebra" EXACT [] synonym: "neural prezygapophyses" RELATED OMO:0003004 [TAO:0001325] synonym: "neural prezygapophysis" NARROW OMO:0003002 [ZFA:0001325] synonym: "neural prezygopophyses" NARROW OMO:0003002 [ZFA:0001325] synonym: "prezygapophysis" EXACT [] synonym: "processus articularis superior" EXACT [] synonym: "processus articularis superior vertebrae" EXACT OMO:0003011 [FMA:11953, FMA:TA] synonym: "superior articular process of vertebra" EXACT HUMAN_PREFERRED [FMA:11953] synonym: "vertebra cranial articular process" EXACT [] synonym: "zygapophysis superior" EXACT OMO:0003011 [FMA:11953, FMA:TA] xref: AAO:0000703 xref: EMAPA:37802 {source="MA:th"} xref: FMA:11953 xref: http://www.informatics.jax.org/cookbook/figures/figure20.shtml xref: MA:0001452 xref: SCTID:42424006 xref: TAO:0001325 xref: ZFA:0001325 is_a: UBERON:0006062 ! zygapophysis property_value: external_definition "Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001325", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001080 name: postzygapophysis def: "Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra." [AAO:LAP] comment: Posteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. [PHENOSCAPE:NI] subset: pheno_slim subset: vertebrate_core synonym: "caudal articular process of vertebra" EXACT [] synonym: "inferior articular process of vertebra" EXACT HUMAN_PREFERRED [FMA:11954] synonym: "neural postzygapophyses" RELATED OMO:0003004 [TAO:0000681] synonym: "neural postzygapophysis" NARROW OMO:0003002 [ZFA:0000681] synonym: "neural postzygopophyses" RELATED [TAO:0000681] synonym: "neural postzygopophysis" EXACT [ZFA:0000681] synonym: "postzygapophysis" EXACT [] synonym: "processus articularis inferior" EXACT [] synonym: "processus articularis inferior vertebrae" EXACT OMO:0003011 [FMA:11954, FMA:TA] synonym: "processus obliquus posterior" RELATED [AAO:0000702] synonym: "vertebra caudal articular process" EXACT [] synonym: "zygapophysis inferior" EXACT OMO:0003011 [FMA:11954, FMA:TA] xref: AAO:0000702 xref: EMAPA:35918 xref: FMA:11954 xref: MA:0001451 xref: SCTID:30079000 xref: TAO:0000681 xref: ZFA:0000681 is_a: UBERON:0006062 ! zygapophysis property_value: external_definition "Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000681", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001081 name: endocardium of ventricle def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] subset: pheno_slim subset: vertebrate_core synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic] synonym: "endocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "endocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "endocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "endocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle endocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricle endocardial tissue" RELATED [VHOG:0000607] synonym: "ventricle endocardium" EXACT [] synonym: "ventricle of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricular endocardium" EXACT [] xref: EMAPA:32747 xref: FMA:12148 xref: MA:0000079 xref: SCTID:192172004 xref: TAO:0002247 xref: VHOG:0000607 xref: ZFA:0001615 is_a: UBERON:0002165 ! endocardium relationship: part_of UBERON:0004784 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! heart ventricle wall [Term] id: UBERON:0001082 name: epicardium of ventricle def: "An epicardial layer that lines a cardiac ventricle." [http://orcid.org/0000-0002-6601-2165] subset: vertebrate_core synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic] synonym: "ventricular epicardium" EXACT [] xref: FMA:12150 xref: TAO:0005058 xref: ZFA:0005058 is_a: UBERON:0002348 ! epicardium relationship: part_of UBERON:0002082 ! cardiac ventricle property_value: external_definition "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005058", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001083 name: myocardium of ventricle def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "ventricle cardiac muscle" RELATED [VHOG:0000604] synonym: "ventricle myocardium" EXACT [] synonym: "ventricular myocardium" EXACT [] xref: EFO:0003088 xref: EMAPA:32748 xref: FMA:12151 xref: MA:0000082 xref: SCTID:192084000 xref: TAO:0005061 xref: VHOG:0000604 xref: ZFA:0005061 is_a: UBERON:0002349 ! myocardium relationship: part_of UBERON:0004784 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! heart ventricle wall property_value: external_definition "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer Hu et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005061", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000604", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001084 name: skin of head def: "A zone of skin that is part of a head [Automatically generated definition]." [OBOL:automatic] comment: EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region synonym: "adult head zone of skin" EXACT [OBOL:automatic] synonym: "head skin" EXACT [] synonym: "head zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of adult head" EXACT [OBOL:automatic] synonym: "zone of skin of head" EXACT [OBOL:automatic] xref: FMA:12166 xref: FMA:24756 xref: MA:0000582 xref: NCIT:C52757 xref: SCTID:181484006 xref: UMLS:C0205029 {source="ncithesaurus:Head_Skin"} is_a: UBERON:0012180 ! head or neck skin relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0001085 name: skin of trunk def: "A zone of skin that is part of a trunk [Automatically generated definition]." [OBOL:automatic] comment: EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region synonym: "torso zone of skin" EXACT [OBOL:automatic] synonym: "trunk skin" EXACT [] synonym: "trunk zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of torso" EXACT [OBOL:automatic] synonym: "zone of skin of trunk" EXACT [OBOL:automatic] xref: EMAPA:37278 {source="MA:th"} xref: FMA:12167 xref: FMA:23093 xref: MA:0000517 xref: NCIT:C12295 xref: SCTID:181489001 xref: UMLS:C0205031 {source="ncithesaurus:Skin_of_the_Trunk"} is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001086 name: obsolete articular cartilage comment: obsoleted as it conflated two distinct classes is_obsolete: true consider: UBERON:0010996 consider: UBERON:0011002 [Term] id: UBERON:0001087 name: pleural fluid def: "Transudate contained in the pleural cavity." [FMA:12273] subset: uberon_slim xref: BTO:0003080 xref: FMA:12273 xref: MA:0002532 xref: MAT:0000500 xref: ncithesaurus:Pleural_Fluid xref: Wikipedia:Pleural_fluid is_a: UBERON:0036244 ! secretion of serous membrane [Term] id: UBERON:0001088 name: urine def: "Excretion that is the output of a kidney." [https://github.com/geneontology/go-ontology/issues/11025, Wikipedia:Urine] subset: efo_slim subset: pheno_slim subset: uberon_slim xref: BTO:0001419 xref: CALOHA:TS-1092 xref: EFO:0001939 xref: EMAPA:36554 xref: ENVO:00002047 xref: FMA:12274 xref: GAID:1189 xref: galen:Urine xref: MA:0002545 xref: MAT:0000058 xref: MESH:D014556 xref: MIAA:0000058 xref: NCIT:C13283 xref: UMLS:C0042036 {source="ncithesaurus:Urine"} xref: Wikipedia:Urine is_a: UBERON:0000174 ! excreta property_value: taxon_notes "kidney excreta from some taxa (e.g. in aves) may not be liquid" xsd:string [Term] id: UBERON:0001089 name: sweat def: "Secretion produced by a sweat gland." [FMA:12275] subset: pheno_slim subset: uberon_slim synonym: "skin exudate" RELATED [BTO:0001254] xref: BTO:0001254 xref: ENVO:02000025 xref: FMA:12275 xref: GAID:1172 xref: MA:0002539 xref: MESH:D013542 xref: NCIT:C13280 xref: UMLS:C0038984 {source="ncithesaurus:Sweat"} xref: Wikipedia:Sweat is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid [Term] id: UBERON:0001090 name: synovial fluid def: "Joint fluid is a transudate of plasma that is actively secreted by synovial cells." [https://www.ncbi.nlm.nih.gov/books/NBK274/] subset: uberon_slim subset: vertebrate_core synonym: "joint fluid" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK274/] xref: BTO:0001339 xref: CALOHA:TS-0996 xref: ENVO:02000039 xref: FMA:12277 xref: GAID:265 xref: galen:SynovialFluid xref: MA:0002544 xref: MESH:D013582 xref: NCIT:C33718 xref: TAO:0005154 xref: UMLS:C0039097 {source="ncithesaurus:Synovial_Fluid"} xref: Wikipedia:Synovial_fluid xref: ZFA:0005154 is_a: UBERON:0007779 ! transudate is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland property_value: external_definition "Portion of organism substance that is a clear fluid that occupies the space in synovial joints.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005154", ontology="TAO", source="ZFIN:curator"} property_value: function_notes "It provides nutrients and lubrication for articular cartilage" xsd:string property_value: structure_notes "The fluid contains hyaluronan secreted by fibroblast-like cells in the synovial membrane, lubricin (proteoglycan 4; PRG4) secreted by the surface chondrocytes of the articular cartilage and interstitial fluid filtered from the blood plasma" xsd:string [Term] id: UBERON:0001091 name: calcareous tooth def: "Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Tooth_(animal)] comment: EDITOR_NOTE we place ZFA ctb 5 tooth here for now. Consider changing name from calcaeeous tooth. Note that sea cucumbers develop calcareous tooth-like structures subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "dental element" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dentine containing tooth" EXACT [] synonym: "tooth" EXACT [] synonym: "vertebrate tooth" EXACT [] xref: AEO:0000220 xref: BTO:0000397 xref: CALOHA:TS-1055 xref: EFO:0000839 xref: EHDAA2:0004605 xref: EMAPA:32906 xref: EV:0100063 xref: FMA:12516 xref: GAID:1260 xref: MA:0000348 xref: MAT:0000041 xref: MESH:D014070 xref: MIAA:0000041 xref: NCIT:C12506 xref: SCTID:302214001 xref: TAO:0001625 xref: UMLS:C0040426 {source="ncithesaurus:Tooth"} xref: VHOG:0001733 xref: Wikipedia:Tooth xref: XAO:0000431 is_a: UBERON:0003913 ! tooth-like structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediate_transformation_of UBERON:0008281 {source="cjm"} ! tooth bud relationship: never_in_taxon NCBITaxon:189497 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:8782 relationship: never_in_taxon NCBITaxon:9257 {source="PMID:10210685"} relationship: never_in_taxon NCBITaxon:9761 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg" xsd:anyURI property_value: has_relational_adjective "dental" xsd:string property_value: homology_notes "The ancestor of recent vertebrate teeth was a tooth-like structure on the outer body surface of jawless fishes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001733", ontology="VHOG", source="PMID:19266065 Koussoulakou DS, Margaritis LH, Koussoulakos SL, A curriculum vitae of teeth: evolution, generation, regeneration. International Journal of Biological Sciences (2009)", source="http://bgee.unil.ch/"} property_value: taxon_notes "absent in living platypus, present in toothed Miocene platypus Obduron dicksoni" xsd:string {source="PMID:10210685"} [Term] id: UBERON:0001092 name: vertebral bone 1 def: "The first vertebral bone in the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "atlas" EXACT [] synonym: "atlas (CI)" EXACT [] synonym: "atlas [C I]" EXACT OMO:0003011 [FMA:12519, FMA:TA] synonym: "atlas vertebra" EXACT [] synonym: "C1" BROAD [] synonym: "C1 vertebra" EXACT [] synonym: "cervical atlas" EXACT [MP:0011576] synonym: "cervical vertebra 1" EXACT HUMAN_PREFERRED [MA:0001421] synonym: "first cervical vertebra" EXACT [] synonym: "vertebra 1" EXACT [TAO:0001167] xref: AAO:0000709 xref: EHDAA:10606 xref: EMAPA:19431 xref: FMA:12519 xref: GAID:236 xref: MA:0001421 xref: MESH:D001270 xref: NCIT:C32239 xref: SCTID:181818007 xref: TAO:0001167 xref: UMLS:C0004170 {source="ncithesaurus:C1_Vertebra"} xref: Wikipedia:Atlas_(anatomy) xref: ZFA:0001167 is_a: UBERON:0002412 ! vertebra relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "First postcranial vertebra, which is modified anteriorly to articulate with the skull.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000709", ontology="AAO", source="AAO:Duellman_and_Trueb_1994"} property_value: external_definition "Vertebra that is posteriorly adjacent to the neurocranium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001167", ontology="TAO", source="TAO:wd"} property_value: vertebra_number "1" xsd:nonNegativeInteger [Term] id: UBERON:0001093 name: vertebral bone 2 def: "The second vertebral bone in the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "axis" RELATED INCONSISTENT [MA:0001422] synonym: "axis (CII)" EXACT [] synonym: "axis [C II]" EXACT OMO:0003011 [FMA:12520, FMA:TA] synonym: "axis vertebra" EXACT [] synonym: "C2" RELATED [] synonym: "C2 vertebra" NARROW [] synonym: "cervical axis" EXACT [MP:0004608] synonym: "cervical vertebra 2" NARROW HUMAN_PREFERRED [MA:0001422] synonym: "second cervical vertebra" NARROW [] synonym: "vertebra 2" EXACT [ZFA:0001168] xref: EHDAA:10608 xref: EMAPA:19432 xref: FMA:12520 xref: GAID:237 xref: MA:0001422 xref: MESH:D001368 xref: NCIT:C32240 xref: SCTID:181819004 xref: TAO:0001168 xref: UMLS:C0004457 {source="ncithesaurus:C2_Vertebra"} xref: Wikipedia:Axis_(anatomy) xref: ZFA:0001168 is_a: UBERON:0002412 ! vertebra relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Vertebra that is posteriorly adjacent to vertebra 1.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001168", ontology="TAO", source="TAO:wd"} property_value: terminology_notes "not the same as ZFA term 'axis'" xsd:string property_value: vertebra_number "2" xsd:nonNegativeInteger [Term] id: UBERON:0001094 name: sacral vertebra def: "A vertebra bone that is part of the sacral region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] comment: EDITOR_NOTE todo - AAO placement to be confirmed by AAO curators (the AAO class may also include modified ribs) subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "sacral segment" EXACT [] synonym: "segment of sacrum" EXACT [] xref: AAO:0000552 xref: EMAPA:18336 xref: FMA:12526 xref: galen:SacralVertebra xref: MA:0000313 xref: NCIT:C12853 xref: neuronames:1706 xref: SCTID:361773005 xref: UMLS:C1261045 {source="ncithesaurus:Sacral_Vertebra"} xref: Wikipedia:Sacrum xref: XAO:0003078 is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0015010 ! sacral vertebra endochondral element relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Enlarged vertebra with transverse processes (diapophyses), and ocassionally ribs, that are modified and elaborated for support of the pelvic girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000552", ontology="AAO", source="AAO:Duellman_and_Trueb_1994"} [Term] id: UBERON:0001095 name: caudal vertebra alt_id: UBERON:0006070 def: "Any vertebral bone that is part of the caudal region of the vertebral column (tail or coccyx)." [http://orcid.org/0000-0002-6601-2165] comment: Taxon notes In zebrafish, Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caudal vertebra" BROAD SENSU [FMA:12527] synonym: "caudal vertebrae" EXACT OMO:0003004 [] synonym: "caudal vertebral bone" EXACT [] synonym: "caudal vertebral bone element" EXACT [] synonym: "coccygea" RELATED [MA:0001420] synonym: "coccygeal segment" EXACT [] synonym: "coccygeal vertebra" EXACT [FMA:12527] synonym: "fused tail vertebra" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tail vertebra" RELATED [MA:0000310] xref: EMAPA:18374 xref: FMA:12527 xref: galen:CoccygealVertebra xref: MA:0000310 xref: MA:0001420 xref: NCIT:C32334 xref: SCTID:361774004 xref: TAO:0000326 xref: UMLS:C0223616 {source="ncithesaurus:Coccygeal_Vertebra"} xref: Wikipedia:Caudal_vertebra xref: XAO:0003079 xref: ZFA:0000326 is_a: UBERON:0002412 ! vertebra is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0018142 ! caudal vertebra endochondral element relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Vertebrae bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000326", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "we deliberately merge the MA classes as we believe them equivalent" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001096 name: wall of esophagus def: "An anatomical wall that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic] synonym: "anatomical wall of gullet" EXACT [OBOL:automatic] synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic] synonym: "esophageal wall" EXACT [] synonym: "esophagus anatomical wall" EXACT [OBOL:automatic] synonym: "esophagus wall" EXACT [] synonym: "gullet anatomical wall" EXACT [OBOL:automatic] synonym: "gullet wall" EXACT [OBOL:automatic] synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic] synonym: "oesophagus wall" EXACT [OBOL:automatic] synonym: "wall of gullet" EXACT [OBOL:automatic] synonym: "wall of oesophagus" EXACT [OBOL:automatic] xref: EMAPA:35326 xref: FMA:12611 xref: MA:0002691 is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0001097 name: axillary lymph node def: "The lymph nodes located around the axillary vein that receive lymphatic drainage from the upper or forelimb, scapular region and pectoral region." [ISBN:0-683-40008-8, MP:0002340] subset: pheno_slim subset: uberon_slim synonym: "axillary node" EXACT [] synonym: "nodi lymphoidei axillares" RELATED OMO:0003011 [Wikipedia:Axillary_lymph_nodes] xref: FMA:276805 xref: MA:0000735 xref: NCIT:C12904 xref: SCTID:181759007 xref: UMLS:C0729594 {source="ncithesaurus:Axillary_Lymph_Node"} xref: Wikipedia:Axillary_lymph_nodes is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node relationship: part_of UBERON:0001467 ! shoulder property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png" xsd:anyURI [Term] id: UBERON:0001098 name: incisor tooth def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/221, Wikipedia:Incisor_tooth] comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight - one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat subset: pheno_slim subset: uberon_slim synonym: "incisor" EXACT [MA:0000349] xref: BTO:0001741 xref: EHDAA:8011 xref: EHDAA:8047 xref: EMAPA:32889 xref: FMA:12823 xref: GAID:1263 xref: MA:0000349 xref: MESH:D007180 xref: NCIT:C32769 xref: SCTID:420856006 xref: UMLS:C0021156 {source="ncithesaurus:Incisor"} xref: Wikipedia:Incisor_tooth is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0003672 ! dentition property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray997.png" xsd:anyURI [Term] id: UBERON:0001099 name: subcostal vein def: "A vein that runs along the bottom of the lowest rib. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,modified]." [Wikipedia:Subcostal_vein] subset: uberon_slim synonym: "vena subcostalis" RELATED OMO:0003011 [Wikipedia:Subcostal_vein] xref: EMAPA:37189 {source="MA:th"} xref: FMA:12845 xref: MA:0002222 xref: NCIT:C53121 xref: SCTID:25248001 xref: UMLS:C0226653 {source="ncithesaurus:Subcostal_Vein"} xref: Wikipedia:Subcostal_vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001100 name: pectoralis minor def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [Wikipedia:Pectoralis_minor_muscle] subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "musculus pectoralis minor" RELATED OMO:0003011 [Wikipedia:Pectoralis_minor_muscle] synonym: "pectoralis minor muscle" EXACT [] synonym: "supracoracoideus" NARROW SENSU [] synonym: "supracoracoideus muscle" NARROW SENSU [] xref: EHDAA2:0001425 xref: EHDAA:8313 xref: EMAPA:18180 xref: FMA:13109 xref: MA:0002355 xref: NCIT:C33285 xref: SCTID:181625002 xref: UMLS:C0224347 {source="ncithesaurus:Pectoralis_Minor"} xref: VHOG:0000902 xref: Wikipedia:Pectoralis_minor_muscle is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png" xsd:anyURI [Term] id: UBERON:0001101 name: external jugular vein def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [Wikipedia:External_jugular_vein] subset: human_reference_atlas subset: uberon_slim synonym: "external jugular" RELATED [EHDAA2:0000468] synonym: "external jugular venous tree" EXACT [] synonym: "vena jugularis externa" RELATED OMO:0003011 [Wikipedia:External_jugular_vein] xref: AAO:0010508 xref: EHDAA2:0000468 xref: EHDAA:9887 xref: EMAPA:17875 xref: FMA:13110 xref: galen:ExternalJugularVein xref: MA:0002156 xref: NCIT:C32562 xref: SCTID:181373000 xref: UMLS:C0226543 {source="ncithesaurus:External_Jugular_Vein"} xref: Wikipedia:External_jugular_vein xref: XAO:0000379 is_a: UBERON:0004711 ! jugular vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI property_value: external_definition "Vein which collects blood from the muscles of the head and tongue and the thyroid gland.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010508", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001102 name: cartilage of main bronchus def: "A cartilage that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic] synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic] synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic] synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic] synonym: "cartilaginous ring of main bronchus" EXACT [EMAPA:19092] synonym: "main bronchial cartilage" EXACT [] synonym: "main bronchus cartilage" EXACT [] synonym: "primary bronchus cartilage" EXACT [OBOL:automatic] synonym: "principal bronchus cartilage" EXACT [OBOL:automatic] xref: EMAPA:19092 xref: FMA:13117 xref: MA:0001846 is_a: UBERON:0001956 ! cartilage of bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0001103 name: diaphragm def: "A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control." [MP:0002279] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "diaphragm muscle" EXACT [BTO:0000341] synonym: "diaphragm of thorax" EXACT [] synonym: "midriff" RELATED [BTO:0000341] synonym: "phren" RELATED [BTO:0000341] synonym: "thoracic diaphragm" EXACT [] xref: BTO:0000341 xref: CALOHA:TS-0198 xref: EFO:0000937 xref: EHDAA2:0003495 xref: EMAPA:17701 xref: EV:0100376 xref: FMA:13295 xref: GAID:158 xref: MA:0001904 xref: MAT:0000502 xref: MESH:D003964 xref: NCIT:C12702 xref: SCTID:181614006 xref: UMLS:C0011980 {source="ncithesaurus:Diaphragm"} xref: VHOG:0000713 xref: Wikipedia:Thoracid_diaphragm is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0003831 ! respiratory system muscle relationship: immediate_transformation_of UBERON:0010084 {evidence="definitional"} ! future diaphragm relationship: never_in_taxon NCBITaxon:8782 {source="Wikipedia:Thoracic_diaphragm#Comparative_anatomy_and_evolution"} property_value: development_notes "originate from the cervical somites, likely C3-C5[PMID:23586979]" xsd:string property_value: external_definition "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." xsd:string {source="GO:0060539"} property_value: function_notes "barrier between thoracic and abdominal cavities; stop gastric contents from refluxing into the oesophagus" xsd:string property_value: function_notes "breathing control" xsd:string property_value: has_relational_adjective "phrenic" xsd:string property_value: homology_notes "The mammals are characterized by a diaphragm, which separates the thoracic portion of the body cavity from the abdominal region and assists in drawing air into the lungs and forcing it out. Modern reptiles lack a muscular diaphragm and it is reasonable to suppose that the diaphragm developed as a new device that made possible a large degree of oxygen intake for active animals. The change may have taken place during the transition from reptile to mammal (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000713", ontology="VHOG", source="ISBN:978-0471384618 Colbert EH, Evolution of the vertebrates: a history of the backboned animals through time (2001) p.278", source="http://bgee.unil.ch/"} property_value: taxon_notes "The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3]" xsd:string property_value: taxon_notes "The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution)" xsd:string [Term] id: UBERON:0001104 name: anterior jugular vein def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [Wikipedia:Anterior_jugular_vein] subset: human_reference_atlas subset: uberon_slim synonym: "anterior external jugular vein" EXACT [] synonym: "vena jugularis anterior" RELATED OMO:0003011 [Wikipedia:Anterior_jugular_vein] xref: EMAPA:37134 {source="MA:th"} xref: FMA:13318 xref: MA:0002155 xref: NCIT:C32094 xref: SCTID:65478008 xref: UMLS:C0226545 {source="ncithesaurus:Anterior_Jugular_Vein"} xref: Wikipedia:Anterior_jugular_vein is_a: UBERON:0004711 ! jugular vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png" xsd:anyURI [Term] id: UBERON:0001105 name: clavicle bone def: "A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/103, PHENOSCAPE:ad] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "clavicle" EXACT [VSAO:0005031] synonym: "clavicula" EXACT [VSAO:0005031] synonym: "collar bone" EXACT [] synonym: "collarbone" EXACT [] xref: AAO:0000761 xref: EMAPA:18721 xref: FMA:13321 xref: GAID:182 xref: galen:Clavicle xref: MA:0001329 xref: MESH:D002968 xref: MFMO:0000047 xref: NCIT:C12695 xref: SCTID:181910004 xref: UMLS:C0008913 {source="ncithesaurus:Clavicle"} xref: VHOG:0000849 xref: VSAO:0005031 xref: Wikipedia:Clavicle is_a: UBERON:0002495 {source="FMA"} ! long bone is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0010905 {editor="mah", source="ISBN:978-0-12-319060-4"} ! clavicle bone primordium relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000761", ontology="AAO"} property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg" xsd:anyURI property_value: development_notes "In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal." xsd:string {source="ISBN:978-0-12-319060-4"} property_value: external_definition "Slender, paired bones of intramembranous origin that invest the anterior margins of the procoracoids.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000761", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "FMA and MA differ in whether they consider this part of the shoulder" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "clavicular" xsd:string property_value: homology_notes "In early tetrapods, the connecting skull bone, the posttemporal, and adjoining shoulder bones, supracleithrum and postcleithrum (=anocleithrum), are absent, leaving a dermal shoulder girdle composed of the remaining ventral elements: the paired cleithrum and clavicle, and an unpaired midventral interclavicle that joins both halves of the girdle across the midline. (...) Several dermal elements of the shoulder persist in early synapsids. The clavicle and interclavicle are present in therapsids and monotremes, but in marsupials and placentals, the interclavicle is absent, the clavicle often is reduced in size, and the scapula becomes the predominant shoulder element.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000849", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.330-333 and Figure 9.18", source="http://bgee.unil.ch/"} property_value: taxon_notes "The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X]." xsd:string [Term] id: UBERON:0001106 name: cephalic vein def: "A superficial vein of the upper limb that communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,modified]." [Wikipedia:Cephalic_vein] subset: human_reference_atlas subset: uberon_slim synonym: "cephalic vein of forearm" EXACT [] synonym: "vena cephalica" RELATED OMO:0003011 [Wikipedia:Cephalic_vein] synonym: "vena cephalica antebrachii" EXACT OMO:0003011 [FMA:13324, FMA:TA] xref: EMAPA:25075 xref: FMA:13324 xref: galen:CephalicVein xref: MA:0002092 xref: NCIT:C32286 xref: SCTID:181391005 xref: UMLS:C0226802 {source="ncithesaurus:Cephalic_Vein"} xref: Wikipedia:Cephalic_vein is_a: UBERON:0003507 ! arm blood vessel is_a: UBERON:0035550 ! superficial vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png" xsd:anyURI [Term] id: UBERON:0001107 name: sternohyoid muscle def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid_muscle] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "m. sternohyoideus" EXACT [] synonym: "musculus sternohyoideus" RELATED OMO:0003011 [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoid" EXACT [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoidei" RELATED OMO:0003004 [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoideus" EXACT [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoideus muscle" EXACT [Wikipedia:Sternohyoid_muscle] xref: EMAPA:19271 xref: FMA:13341 xref: MA:0002383 xref: NCIT:C53044 xref: SCTID:244830003 xref: UMLS:C0224162 {source="ncithesaurus:Sternohyoid"} xref: Wikipedia:Sternohyoid_muscle is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: action_notes "draws hyoid posteriorly." xsd:string property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/67/Sternohyoid_muscle.PNG" xsd:anyURI property_value: external_definition "The sternohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the sternum.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_ontology_notes "Note that as defined here, this structure attaches to the sternum, which is a tetrapod structure. TAO has class 'sternohyoid' as part of mandibular muscle, but no sternum, so excluded here. The TAO/ZFA class has no definition, but the dictionary of icthyology states: 'a large muscle originating on the ventral spine of the postcleithrum and inserting on the sides of the urohyal. It functions in rapid opening of the jaw and expanding the buccal cavity' - a generic way of grouping these is via a hyoid - girdle connection" xsd:string {external_ontology="TAO"} [Term] id: UBERON:0001108 name: omohyoid muscle def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid_muscle] comment: interior and superior belly subset: human_reference_atlas subset: uberon_slim synonym: "musculus omohyoideus" RELATED OMO:0003011 [Wikipedia:Omohyoid_muscle] synonym: "omohyoid" EXACT [] synonym: "omohyoideus" EXACT [Wikipedia:Omohyoid_muscle] synonym: "omohyoideus muscle" EXACT [Wikipedia:Omohyoid_muscle] xref: EMAPA:37689 {source="MA:th"} xref: FMA:13342 xref: MA:0002348 xref: NCIT:C52971 xref: SCTID:244833001 xref: UMLS:C0224163 {source="ncithesaurus:Omohyoid"} xref: Wikipedia:Omohyoid_muscle is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b0/Gray1210.png" xsd:anyURI property_value: external_definition "The omohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the scapula.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001109 name: sternothyroid muscle def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "musculus sternothyroideus" RELATED OMO:0003011 [Wikipedia:Sternothyroid_muscle] synonym: "sterno-thyroideus" RELATED [Wikipedia:Sternothyroid_muscle] synonym: "sternothyreoidei" RELATED OMO:0003004 [Wikipedia:Sternothyroid_muscle] synonym: "sternothyreoideus" RELATED [Wikipedia:Sternothyroid_muscle] synonym: "sternothyroid" EXACT [] synonym: "sternothyroideus" RELATED [Wikipedia:Sternothyroid_muscle] xref: EMAPA:19272 xref: FMA:13343 xref: MA:0002386 xref: NCIT:C53070 xref: SCTID:244831004 xref: UMLS:C0224166 {source="ncithesaurus:Sternothyroid"} xref: Wikipedia:Sternothyroid_muscle is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: action_notes "draws larynx caudally" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/10/Sternothyroideus.png" xsd:anyURI property_value: external_definition "The sternothyroid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the thyroid cartilage and the sternum.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001110 name: thyrohyoid muscle def: "The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "musculus thyrohyoideus" RELATED OMO:0003011 [Wikipedia:Thyrohyoid_muscle] synonym: "thyreohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle] synonym: "thyreohyoideus muscle" RELATED [Wikipedia:Thyrohyoid_muscle] synonym: "thyrohyoid" EXACT [Wikipedia:Thyrohyoid_muscle] synonym: "thyrohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle] xref: EMAPA:19273 xref: FMA:13344 xref: MA:0002393 xref: NCIT:C53178 xref: SCTID:244832006 xref: UMLS:C0224167 {source="ncithesaurus:Thyrohyoid"} xref: Wikipedia:Thyrohyoid_muscle is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/aa/Thyrohyoid_muscle.PNG" xsd:anyURI property_value: external_definition "The thyrohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by C1 and Cranial Nerve XII ; it attaches to the thyroid cartilage and the hyoid apparatus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001111 name: intercostal muscle def: "The respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib." [MESH:A02.633.567.900.500, MGI:csmith, MP:0002280] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "intercostales" RELATED [] synonym: "musculus intercostalis" EXACT OMO:0003011 [FMA:13354, FMA:TA] synonym: "respiratory muscle" RELATED [] synonym: "rib muscle" RELATED [] xref: BTO:0005281 xref: EFO:0001368 xref: EHDAA2:0000841 xref: EHDAA:5988 xref: EMAPA:18521 xref: FMA:13354 xref: GAID:159 xref: MA:0002324 xref: MA:0003165 xref: MESH:D007366 xref: NCIT:C32824 xref: SCTID:181746004 xref: UMLS:C0021724 {source="ncithesaurus:Intercostal_Muscle"} xref: VHOG:0000903 xref: Wikipedia:Intercostal_muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005175 ! chest organ is_a: UBERON:8450004 ! intercostal element relationship: develops_from UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png" xsd:anyURI property_value: homology_notes "Inspiration by active expansion of the thorax evolved later, in the ancestor of reptiles, birds, and mammals. This was powered originally by the intercostal muscles (as in lizards or crocodilians) and later (in mammals only) by a muscular diaphragm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000903", ontology="VHOG", source="ISBN:978-0262112789 Kent RD, The MIT Encyclopedia of Communication Disorders (20039 p.56", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001112 name: latissimus dorsi muscle def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]." [Wikipedia:Latissimus_dorsi_muscle] comment: Dorsal group[Kardong] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "dorsal latissimus muscle" EXACT [] synonym: "latissimi dorsi" EXACT OMO:0003004 [] synonym: "latissimus dorsi" EXACT [] synonym: "musculus latissimus dorsi" EXACT [] synonym: "musculus latissimus dorsi" RELATED OMO:0003011 [Wikipedia:Latissimus_dorsi_muscle] xref: EFO:0003067 xref: EHDAA2:0000932 xref: EHDAA:8307 xref: EMAPA:18178 xref: FMA:13357 xref: MA:0002331 xref: NCIT:C33150 xref: SCTID:181747008 xref: UMLS:C0224362 {source="ncithesaurus:Musculus_Latissimus_Dorsi"} xref: VHOG:0000930 xref: Wikipedia:Latissimus_dorsi_muscle is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0010982 {source="EHDAA2"} ! latissimus dorsi pre-muscle mass relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png" xsd:anyURI property_value: taxon_notes "In humans it inserts along a roughened line deep in the groove. In other mammals (most, I believe) it is an actual projection, the latissimus dorsi process [FEED:rd] [https://github.com/obophenotype/uberon/issues/1192]" xsd:string [Term] id: UBERON:0001113 name: lobe of liver def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes] synonym: "hepatic lobe" EXACT [] synonym: "liver lobe" EXACT [] synonym: "lobus hepatis" EXACT [] xref: EMAPA:18306 xref: FMA:13361 xref: MA:0000360 xref: NCIT:C49579 xref: SCTID:245378000 xref: UMLS:C0447541 {source="ncithesaurus:Liver_Lobe"} xref: Wikipedia:Liver#Lobes is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe relationship: part_of UBERON:0002107 ! liver property_value: editor_note "some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts" xsd:string [Term] id: UBERON:0001114 name: right lobe of liver def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver] subset: uberon_slim subset: vertebrate_core synonym: "2nd lobe" RELATED [TAO:0005173] synonym: "gall bladder lobe" RELATED SENSU [ZFA:0005173] synonym: "liver right lobe" EXACT [] synonym: "lobus hepaticus dexter" EXACT OMO:0003011 [] synonym: "lobus hepatis dexter" RELATED OMO:0003011 [Wikipedia:Right_lobe_of_liver] synonym: "right hepatic lobe" RELATED [EMAPA:18311] synonym: "right liver lobe" EXACT [ZFA:0005173] synonym: "second lobe" RELATED [TAO:0005173] xref: EHDAA2:0001008 xref: EHDAA:4001 xref: EMAPA:18311 xref: FMA:13362 xref: MA:0000363 xref: NCIT:C33481 xref: SCTID:362182008 xref: TAO:0005173 xref: UMLS:C0227481 {source="ncithesaurus:Right_Lobe_of_the_Liver"} xref: VHOG:0001424 xref: Wikipedia:Right_lobe_of_liver xref: ZFA:0005173 is_a: UBERON:0001113 ! lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_definition "Portion of the liver which develops on the fish's right side adjacent to the gall bladder.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005173", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001115 name: left lobe of liver def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver] subset: uberon_slim subset: vertebrate_core synonym: "left hepatic lobe" RELATED [EMAPA:18307] synonym: "left liver lobe" EXACT [] synonym: "liver left lobe" EXACT [] synonym: "lobus hepaticus sinister" EXACT OMO:0003011 [] synonym: "lobus hepatis sinister" RELATED OMO:0003011 [Wikipedia:Left_lobe_of_liver] xref: EHDAA2:0001000 xref: EHDAA:3995 xref: EMAPA:18307 xref: FMA:13363 xref: MA:0000361 xref: NCIT:C32965 xref: SCTID:362183003 xref: TAO:0005172 xref: UMLS:C0227486 {source="ncithesaurus:Left_Lobe_of_the_Liver"} xref: VHOG:0001423 xref: Wikipedia:Left_lobe_of_liver xref: ZFA:0005172 is_a: UBERON:0001113 ! lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_definition "Portion of the liver which develops on the fish's left side.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005172", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001116 name: quadrate lobe of liver def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [Wikipedia:Quadrate_lobe_of_liver] subset: uberon_slim synonym: "liver quadrate lobe" EXACT [] synonym: "lobus quadratus" EXACT [] synonym: "lobus quadratus" RELATED OMO:0003011 [Wikipedia:Quadrate_lobe_of_liver] synonym: "lobus quadratus hepatis" EXACT OMO:0003011 [FMA:13364, FMA:TA] xref: EHDAA2:0001012 xref: EHDAA:8082 xref: EMAPA:18318 xref: FMA:13364 xref: MA:0000365 xref: NCIT:C33001 xref: SCTID:279929003 xref: VHOG:0000509 xref: Wikipedia:Quadrate_lobe_of_liver is_a: UBERON:0001114 ! right lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_definition "The portion of the right lobe of the liver between the gall bladder, the porta hepatis, the round ligament and the lower margin of the organ. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000509", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001117 name: caudate lobe of liver def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [Wikipedia:Caudate_lobe_of_liver] subset: uberon_slim synonym: "couinaud hepatic segment I" EXACT [FMA:13365] synonym: "hepatovenous segment I" EXACT [] synonym: "liver caudate lobe" EXACT [] synonym: "liver caudate process" RELATED [] synonym: "lobus caudatus" EXACT OMO:0003011 [] synonym: "lobus caudatus hepatis" EXACT OMO:0003011 [FMA:13365, FMA:TA] synonym: "pars posterior hepatis" EXACT OMO:0003011 [FMA:13365, FMA:TA] synonym: "posterior hepatic segment i" EXACT [] synonym: "posterior liver" EXACT [] synonym: "posterior part of liver" EXACT [] synonym: "segment hepatis posterius I" RELATED OMO:0003011 [Wikipedia:Caudate_lobe_of_liver] synonym: "segment I of liver" EXACT [] synonym: "segmentum hepatis I" EXACT OMO:0003011 [FMA:13365, FMA:TA] synonym: "Spiegelian lobe" EXACT [] synonym: "Spigel lobe" EXACT [] xref: EHDAA2:0001005 xref: EHDAA:6990 xref: EMAPA:18313 xref: FMA:13365 xref: MA:0000364 xref: NCIT:C33000 xref: SCTID:362184009 xref: UMLS:C0227489 {source="ncithesaurus:Lobus_Caudatus"} xref: VHOG:0000508 xref: Wikipedia:Caudate_lobe_of_liver is_a: UBERON:0001114 {source="MA"} ! right lobe of liver relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: editor_note "Check left vs right in mouse and human" xsd:string property_value: external_definition "The portion of the right lobe of the liver between the fissure of the ligamentum venosum and the bare area of the liver. It ends into the superior recess of the lesser peritoneal sac. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000508", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The caudate lobe is the only real and constant hepatic lobe of mammals (...) .[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000508", ontology="VHOG", source="PMID:1610084 Van Minh T, Galizia G, Lieto E, Anatomy of the caudate lobe of the liver. New aspects and surgical applications. (Article in French) Annales de chirurgie (1992)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001118 name: lobe of thyroid gland def: "A lobe of tissue that is part of a thyroid gland." [http://orcid.org/0000-0002-6601-2165] comment: The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids synonym: "lobuli glandulae thyroideae" RELATED OMO:0003011 [Wikipedia:Lobes_of_thyroid_gland] synonym: "lobus (glandula thyroidea)" EXACT [] synonym: "lobus glandulae thyroideae" EXACT OMO:0003011 [FMA:13367, FMA:TA] synonym: "thyroid gland lobe" EXACT [] synonym: "thyroid lobe" EXACT [] xref: EHDAA2:0002032 xref: EMAPA:18196 xref: FMA:13367 xref: MA:0000131 xref: NCIT:C33784 xref: SCTID:245537001 xref: UMLS:C0447647 {source="ncithesaurus:Thyroid_Gland_Lobe"} xref: VHOG:0000732 xref: Wikipedia:Lobes_of_thyroid_gland is_a: UBERON:0009912 ! anatomical lobe is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0002046 ! thyroid gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png" xsd:anyURI property_value: homology_notes "Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000732", ontology="VHOG", source="http://bgee.unil.ch/", source="http://www.thyroidmanager.org/Chapter1/chapter01.htm"} [Term] id: UBERON:0001119 name: right lobe of thyroid gland def: "A lobe of thyroid gland that is in the right side of a thyroid gland." [OBOL:automatic] synonym: "lobus dexter (glandula thyroidea)" EXACT [] synonym: "right thyroid lobe" EXACT [] synonym: "thyroid gland right lobe" EXACT [] xref: EHDAA2:0001759 xref: EMAPA:18198 xref: FMA:13368 xref: MA:0000729 xref: NCIT:C33491 xref: SCTID:170482008 xref: UMLS:C0229581 {source="ncithesaurus:Right_Thyroid_Gland_Lobe"} xref: VHOG:0000733 is_a: UBERON:0001118 ! lobe of thyroid gland property_value: homology_notes "Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000733", ontology="VHOG", source="http://bgee.unil.ch/", source="http://www.thyroidmanager.org/Chapter1/chapter01.htm"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001120 name: left lobe of thyroid gland def: "A lobe of thyroid gland that is in the left side of a thyroid gland." [OBOL:automatic] synonym: "left thyroid lobe" EXACT [] synonym: "lobus sinister (glandula thyroidea)" EXACT [] synonym: "thyroid gland left lobe" EXACT [] xref: EHDAA2:0000965 xref: EMAPA:18197 xref: FMA:13369 xref: MA:0000728 xref: NCIT:C32973 xref: SCTID:170784008 xref: UMLS:C0229582 {source="ncithesaurus:Left_Thyroid_Gland_Lobe"} xref: VHOG:0000734 is_a: UBERON:0001118 ! lobe of thyroid gland property_value: homology_notes "Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000734", ontology="VHOG", source="http://bgee.unil.ch/", source="http://www.thyroidmanager.org/Chapter1/chapter01.htm"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001121 name: longus colli muscle def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]." [Wikipedia:Longus_colli_muscle] subset: organ_slim subset: uberon_slim synonym: "longi colli" RELATED [Wikipedia:Longus_colli_muscle] synonym: "longus colli" EXACT [MA:0002341] synonym: "longus colli muscle" EXACT [Wikipedia:Longus_colli_muscle] synonym: "musculus longus colli" RELATED OMO:0003011 [Wikipedia:Longus_colli_muscle] xref: EMAPA:37654 {source="MA:th"} xref: FMA:13370 xref: MA:0002341 xref: NCIT:C52959 xref: SCTID:244836009 xref: UMLS:C0224169 {source="ncithesaurus:Longus_Colli"} xref: Wikipedia:Longus_colli_muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005178 ! thoracic cavity element property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a6/Longus_colli.png" xsd:anyURI [Term] id: UBERON:0001122 name: scalenus medius def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [Wikipedia:Scalenus_medius] subset: human_reference_atlas subset: uberon_slim synonym: "medial scalene muscle" EXACT [] synonym: "middle scalene" EXACT [] synonym: "musculus scalenus medius" EXACT OMO:0003011 [FMA:13386, FMA:TA] synonym: "musculus scalenus medius" RELATED OMO:0003011 [Wikipedia:Scalenus_medius] synonym: "scalenus medius muscle" EXACT [] xref: EMAPA:37738 {source="MA:th"} xref: FMA:13386 xref: MA:0002370 xref: NCIT:C52986 xref: SCTID:244844009 xref: UMLS:C0224174 {source="ncithesaurus:Scalenus_Medius"} xref: Wikipedia:Scalenus_medius is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0004518 ! muscle of vertebral column relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fa/Scalenus_medius.png" xsd:anyURI [Term] id: UBERON:0001123 name: scalenus posterior def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [Wikipedia:Scalenus_posterior] subset: uberon_slim synonym: "musculus scalenus posterior" EXACT OMO:0003011 [FMA:13387, FMA:TA] synonym: "musculus scalenus posterior" RELATED OMO:0003011 [Wikipedia:Scalenus_posterior] synonym: "posterior scalene" EXACT [] synonym: "posterior scalene muscle" EXACT [] synonym: "scalenus dorsalis" EXACT [] synonym: "scalenus dorsalis muscle" EXACT [] xref: EMAPA:37737 {source="MA:th"} xref: FMA:13387 xref: MA:0002369 xref: NCIT:C52985 xref: UMLS:C1710019 {source="ncithesaurus:Scalenus_Dorsalis"} xref: Wikipedia:Scalenus_posterior is_a: UBERON:0002377 ! muscle of neck property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/f3/Scalenus_posterior.png" xsd:anyURI [Term] id: UBERON:0001125 name: serratus ventralis def: "The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [Wikipedia:Serratus_anterior_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Boxer's muscle" EXACT [] synonym: "musculus serratus anterior" RELATED OMO:0003011 [Wikipedia:Serratus_anterior_muscle] synonym: "serratus anterior" EXACT [VHOG:0000679] synonym: "serratus anterior muscle" EXACT [] synonym: "serratus lateralis" RELATED OMO:0003011 [Wikipedia:Serratus_anterior_muscle] synonym: "serratus ventralis muscle" EXACT [] xref: EHDAA2:0001832 xref: EHDAA:9463 xref: EMAPA:18525 xref: FMA:13397 xref: MA:0002378 xref: NCIT:C53014 xref: SCTID:181748003 xref: UMLS:C1710059 {source="ncithesaurus:Serratus_Ventralis"} xref: VHOG:0000679 xref: Wikipedia:Serratus_anterior_muscle is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0010986 {source="EHDAA2"} ! serratus ventralis pre-muscle mass relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png" xsd:anyURI [Term] id: UBERON:0001126 name: serratus dorsalis superior muscle def: "The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [Wikipedia:Serratus_posterior_superior_muscle] subset: uberon_slim synonym: "serratus dorsalis cranialis" EXACT [MA:0002377] synonym: "serratus dorsalis cranialis muscle" EXACT [] synonym: "serratus posterior superior" EXACT [FMA:13401] synonym: "superior serratus dorsalis" EXACT [] synonym: "superior serratus posterior" EXACT [FMA:13401] xref: EMAPA:37698 {source="MA:th"} xref: FMA:13401 xref: MA:0002377 xref: NCIT:C53012 xref: SCTID:244935007 xref: UMLS:C1710058 {source="ncithesaurus:Serratus_Dorsalis_Cranialis"} xref: Wikipedia:Serratus_posterior_superior_muscle is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0011217 {source="FMA"} ! serratus dorsalis muscle [Term] id: UBERON:0001127 name: serratus dorsalis inferior muscle def: "A muscle that originates from the vertebrae and inserts in the ribs." [Wikipedia:Serratus_posterior_inferior_muscle] subset: uberon_slim synonym: "inferior serratus dorsalis" EXACT [] synonym: "inferior serratus posterior" EXACT [FMA:13402] synonym: "posterior serratus" RELATED [] synonym: "serratus dorsalis caudalis" EXACT [] synonym: "serratus posterior inferior" EXACT [FMA:13402] synonym: "serratus posterior inferior" RELATED [MA:0002376] xref: EMAPA:37697 {source="MA:th"} xref: FMA:13402 xref: MA:0002376 xref: NCIT:C53007 xref: SCTID:244936008 xref: UMLS:C1711277 {source="ncithesaurus:Serratus_Dorsalis_Caudalis"} xref: Wikipedia:Serratus_posterior_inferior_muscle is_a: UBERON:0011217 {source="FMA"} ! serratus dorsalis muscle property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/aa/Serratus_posterior.PNG" xsd:anyURI [Term] id: UBERON:0001128 name: sternocleidomastoid def: "A paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "musculus sternocleidomastoideus" RELATED OMO:0003011 [Wikipedia:Sternocleidomastoid_muscle] synonym: "SCM" BROAD OMO:0003000 [] synonym: "sterno-cleido-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sterno-mastoid" EXACT [] synonym: "sterno-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternocleidomastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternocleidomastoid muscle" EXACT [BTO:0005125] synonym: "sternocleidomastoid muscles" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternocleidomastoidei" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternocleidomastoideus" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternocleidomastoideus muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternocleidomastoids" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternomastoid" EXACT [] synonym: "sternomastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "sternomastoid muscle" EXACT [] synonym: "sternomastoid muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle] synonym: "supraclavicularis muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle] xref: BTO:0005125 xref: EMAPA:25137 xref: FMA:13407 xref: MA:0002384 xref: NCIT:C33616 xref: SCTID:181741009 xref: UMLS:C0224153 {source="ncithesaurus:Sternocleidomastoid_Muscle"} xref: VHOG:0000853 xref: Wikipedia:Sternocleidomastoid_muscle is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011364 ! cleidocephalicus muscle relationship: develops_from UBERON:0010987 ! sterno-mastoid pre-muscle mass relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray512.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f9/Gray512.svg" xsd:anyURI property_value: editor_note "TODO: sternocleidomastoid = sternomastoid + Cleidomastoideus. Origin: from manubrium sterni (sterno) and clavicle (cleido) and it's insertion at the mastoid process of the temporal bone." xsd:string property_value: homology_notes "The sternomastoid and the three parts of the trapezius are branchiomeric muscles that have secondarily acquired an attachment to the pectoral girdle. They evolved from the fish cucullaris.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000853", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.345", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001129 name: subscapularis muscle def: "The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [Wikipedia:Subscapularis_muscle] comment: Dorsal group[Kardong]; Note from cmungall "we changed the attachment site to be the scapula (for technical reasons), put it's in the fossa, see https://github.com/obophenotype/uberon/issues/1455" subset: human_reference_atlas subset: uberon_slim synonym: "musculus subscapularis" RELATED OMO:0003011 [Wikipedia:Subscapularis_muscle] synonym: "subcoracoscapularis" RELATED SENSU [ISBN:0073040584] synonym: "subscapularis" EXACT [MA:0002388] xref: EHDAA2:0001943 xref: EHDAA:8317 xref: EMAPA:18181 xref: FMA:13413 xref: MA:0002388 xref: NCIT:C33651 xref: SCTID:277446000 xref: UMLS:C0584884 {source="ncithesaurus:Subscapularis"} xref: VHOG:0000850 xref: Wikipedia:Subscapularis_muscle is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0010891 ! pectoral complex muscle is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0010993 ! subscapularis pre-muscle mass relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle relationship: present_in_taxon NCBITaxon:9606 relationship: seeAlso https://github.com/obophenotype/uberon/issues/1455 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png" xsd:anyURI [Term] id: UBERON:0001130 name: vertebral column def: "Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body[modified from VSAO]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?func=detail&aid=3530322&group_id=76834&atid=2257941, VSAO:0000185] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "backbone" NARROW [FMA:13478] synonym: "columna vertebralis" RELATED [BTO:0000818] synonym: "dorsal spine" RELATED [BTO:0000818] synonym: "spinal column" RELATED [MESH:A02.835.232.834] synonym: "spine" BROAD [FMA:13478] synonym: "vertebral column skeleton" NARROW [AAO:0000699] synonym: "vertebral region" RELATED [] xref: AAO:0000699 xref: AAO:0000734 xref: BTO:0000818 xref: EFO:0001369 xref: EHDA:10119 xref: EMAPA:35919 xref: FMA:13478 xref: GAID:106 xref: galen:SpinalColumn xref: MA:0002416 xref: MESH:D013131 xref: NCIT:C12998 xref: NCIT:C33588 xref: NIF_Subcellular:sao1145756102 xref: SCTID:44300000 xref: TAO:0001559 xref: UMLS:C0037949 {source="ncithesaurus:Vertebral_Column"} xref: UMLS:C1519455 {source="ncithesaurus:Spinal_Cord_Column"} xref: VHOG:0001142 xref: VSAO:0000185 xref: Wikipedia:Vertebral_column xref: XAO:0003074 xref: ZFA:0001559 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: never_in_taxon NCBITaxon:7762 relationship: part_of UBERON:0011138 {source="cjm"} ! postcranial axial skeletal system relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton" xsd:string property_value: external_definition "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000185", ontology="VSAO", source="VSAO:curator"} property_value: external_definition "The vertebral column consists of a series of vertebrae connected by ligaments. It provides a supporting axis for the body and protects the spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001142", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/vertebral+column"} property_value: homology_notes "Vertebrata is characterized by three synapomorphies. First, vertebrates have a backbone composed of vertebrae (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001142", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.53", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001131 name: vertebral foramen def: "A foramen within a vertebral element through which the spinal cord runs. It is formed by the anterior segment, and the posterior part, the vertebral arch." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Vertebral_foramen] subset: uberon_slim synonym: "foramen vertebrale" RELATED OMO:0003011 [Wikipedia:Vertebral_foramen] synonym: "vertebra neural canal" EXACT [] xref: AAO:0000729 xref: EMAPA:37803 {source="MA:th"} xref: FMA:13479 xref: MA:0001454 xref: SCTID:280734009 xref: Wikipedia:Vertebral_foramen is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0006692 ! vertebral canal relationship: part_of UBERON:0010913 ! vertebral element property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/10/Foramenvertebrale.png" xsd:anyURI property_value: external_definition "Opening on the vertebra for a spinal nerve as it emerges from the spinal canal.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000729", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001132 name: parathyroid gland def: "The parathyroid gland is an endocrine gland for secretion of parathyroid hormone, usually found as a pair, embedded in the connective tissue capsule on the posterior surface of the thyroid gland. Parathyroid regulates calcium and phosphorous metabolism." [ISBN:0-683-40008-8, MP:0000678, Wikipedia:Parathyroid_gland] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "epithelial body" RELATED [XAO:0000167] synonym: "parathyroid" EXACT [] synonym: "parathyroid secreting cell" RELATED [] xref: AAO:0010545 xref: BTO:0000997 xref: CALOHA:TS-0745 xref: EFO:0000862 xref: EMAPA:32812 xref: EV:0100134 xref: FMA:13890 xref: GAID:452 xref: MA:0000128 xref: MAT:0000082 xref: MESH:D010280 xref: MIAA:0000082 xref: NCIT:C12765 xref: SCTID:181121007 xref: UMLS:C0030518 {source="ncithesaurus:Parathyroid_Gland"} xref: VHOG:0001188 xref: Wikipedia:Parathyroid_gland xref: XAO:0000167 is_a: UBERON:0002368 ! endocrine gland property_value: development_notes "In humans and chick it emerges from pouches 3 and 4, but in mice it is exclusively generated by the third pouch" xsd:string property_value: development_notes "table 13.1 of Kardong is used to create the taxon-specific developmental relationships here, although some omissions are made for simplicity." xsd:string {source="PMID:16313389"} property_value: external_definition "Any one of several small structures, usually four, attached to the dorsal surfaces of the lateral lobes of the thyroid gland. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001188", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/parathyroid+gland"} property_value: external_definition "Either of the two pairs of small, spherical, encapsulated glands which develop from ventral growths of the third and fourth pharyngeal pouches and are closely associated with the external jugular veins. Calcitonin and parathyroid hormone are secreted by these glands.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010545", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "The evolution of the tetrapods, and the shift from an aquatic to a terrestrial environment, was believed to have required new controls for regulating calcium homeostasis, and thus the evolution of parathyroid glands (...) both the tetrapod parathyroid and the gills of fish contribute to the regulation of extracellular calcium levels. It is therefore reasonable to suggest that the parathyroid gland evolved as a result of the transformation of the gills into the parathyroid glands of tetrapods and the transition from an aquatic to a terrestrial environment. This interpretation would also explain the positioning of the parathyroid gland within the pharynx in the tetrapod body. Were the parathyroid gland to have emerged de novo with the evolution of the tetrapods it could, as an endocrine organ, have been placed anywhere in the body and still exert its effect.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001188", ontology="VHOG", source="DOI:10.1111/j.1469-7580.2005.00472.x Graham A, Okabe M, Quinlan R, The role of the endoderm in the development and evolution of the pharyngeal arches. J Anat (2005)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Parathyroid glands are found in all adult tetrapods, although they vary in their number, and in their exact position. Mammals typically have four parathyroids, while other groups typically have six. Fish do not possess parathyroid glands, although the ultimobranchial glands, which are found close to the oesophagus, may have a similar function and could even be homologous with the tetrapod parathyroids. Even these glands are absent in the most primitive vertebrates, the jawless fish, but as these species have no bone in their skeletons, only cartilage, it may be that they have less need to regulate calcium metabolism. The conserved homology of genes and calcium-sensing receptors in fish gills with those in the parathryroid glands of birds and mammals is recognized by evolutionary developmental biology as evolution-using genes and gene networks in novel ways to generate new structures with some similar functions and novel functions[WP]" xsd:string [Term] id: UBERON:0001133 name: cardiac muscle tissue alt_id: UBERON:0007096 def: "Muscle tissue composed of cardiac muscle cells, forming the muscles of the heart[ZFA,modified]." [ZFA:0005280] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cardiac muscle" EXACT [] synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac musculature" RELATED [BILA:0000134] synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic] xref: AAO:0010245 xref: AEO:0000142 xref: BILA:0000134 xref: BTO:0000199 xref: CALOHA:TS-0440 xref: EHDAA2:0003142 xref: EMAPA:32688 xref: FMA:14068 xref: galen:CardiacMuscle xref: galen:CardiacMuscleTissue xref: ncithesaurus:Heart_Muscle xref: TAO:0005280 xref: Wikipedia:Cardiac_muscle xref: ZFA:0005280 is_a: UBERON:8600006 ! visceral striated muscle tissue relationship: part_of UBERON:0007100 ! primary circulatory organ property_value: editor_note "check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit" xsd:string [Term] id: UBERON:0001134 name: skeletal muscle tissue def: "Muscle tissue that consists primarily of skeletal muscle fibers." [https://github.com/obophenotype/uberon/issues/324] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "skeletal muscle" BROAD [] synonym: "skeletal muscle system" RELATED [BTO:0001103] synonym: "somatic muscle" RELATED [BTO:0001103] xref: EMAPA:32716 xref: FMA:14069 xref: MA:0002439 xref: NCIT:C13050 xref: SCTID:426215008 xref: UMLS:C0242692 {source="ncithesaurus:Skeletal_Muscle_Tissue"} xref: Wikipedia:Skeletal_striated_muscle is_a: UBERON:0002036 ! striated muscle tissue relationship: develops_from UBERON:0003082 ! myotome relationship: part_of UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg" xsd:anyURI property_value: editor_note "TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Todo - group FBbt:00005073 - somatic muscle." xsd:string property_value: external_definition "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005277", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]" xsd:string {external_class="FMA:14069", ontology="FMA"} property_value: homology_notes "This result implies the following views in terms of evolutionary differentiation: (1) Arthropod striated muscle and vertebrate skeletal and cardiac muscles share a common ancestor. In other words, they did not evolve independently (...) (5) The divergence of vertebrate skeletal and cardiac muscles/vertebrate smooth muscle and nonmuscle is at least before that of vertebrates/arthropods. In other words, emergence of skeletal and cardiac musle type tissues preceded the vertebrate/arthropod divergence (ca. 700 MYA).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000319", ontology="VHOG", source="PMID:10368962 Oota S, Saitou N, Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees. Mol Biol Evol (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001135 name: smooth muscle tissue def: "Muscle tissue which is unstriated, composed primarily of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]." [GO:0006939, Wikipedia:Smooth_muscle_tissue] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "involuntary muscle" EXACT [] synonym: "non-striated muscle" EXACT [] synonym: "smooth muscle" EXACT [] synonym: "textus muscularis levis; textus muscularis nonstriatus" RELATED OMO:0003011 [Wikipedia:Smooth_muscle_tissue] synonym: "textus muscularis nonstriatus" EXACT OMO:0003011 [FMA:14070, FMA:TA] synonym: "visceral muscle" NARROW SENSU [] synonym: "visceral muscle tissue" NARROW SENSU [] xref: AAO:0010244 xref: AEO:0000141 xref: BTO:0001260 xref: CALOHA:TS-0943 xref: EFO:0000889 xref: EHDAA2:0003141 xref: EMAPA:32717 xref: EV:0100378 xref: FMA:14070 xref: GAID:167 xref: galen:SmoothMuscle xref: galen:SmoothMuscleTissue xref: MA:0000166 xref: MAT:0000303 xref: MESH:D009130 xref: MIAA:0000303 xref: NCIT:C12437 xref: TAO:0005274 xref: UMLS:C1267092 {source="ncithesaurus:Smooth_Muscle_Tissue"} xref: VHOG:0001246 xref: WBbt:0005781 xref: Wikipedia:Smooth_muscle_tissue xref: XAO:0000175 xref: ZFA:0005274 is_a: UBERON:0002385 ! muscle tissue property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/3b/Glatte_Muskelzellen.jpg" xsd:anyURI property_value: external_definition "A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005274", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Involuntary muscle tissue consisting of uninucleate spindle-shaped fibers.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010244", ontology="AAO", source="AAO:CAM"} property_value: homology_notes "(...) the first bilateral animals possessed only smooth muscles with the molecular repertoire necessary to build a striated muscle. (...) it is more parsimonious to regard striated muscle cells as a sister cell type to the smooth muscle cells. In this scenario, striated and smooth muscles would have arisen in the stem lineage that led to the Nephrozoa (i.e. all Bilateria exclusive the acoelomorphs) (Hejnol et al., 2009), from an 'acoel-like' smooth muscle, by segregation and divergence of functions and through differential recruitment of additional genes[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001246", ontology="VHOG", source="DOI:10.1002/jez.b.21416 Chiodin M, Achatz JG, Wanninger A, Martinez P, Molecular architecture of muscles in an acoel and its evolutionary implications. Journal of Experimental Zoology (2011)", source="http://bgee.unil.ch/"} property_value: terminology_notes "GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells." xsd:string [Term] id: UBERON:0001136 name: mesothelium def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri)." [FMA:14074, Wikipedia:Mesothelium] subset: uberon_slim xref: AEO:0000111 xref: BTO:0002422 xref: CALOHA:TS-1183 xref: EHDAA2_RETIRED:0003111 xref: EHDAA:2331 xref: EHDAA:2349 xref: EHDAA:295 xref: EHDAA:6073 xref: EHDAA:640 xref: EHDAA:646 xref: EMAPA:32856 xref: FMA:14074 xref: MA:0000565 xref: NCIT:C33105 xref: SCTID:361918002 xref: UMLS:C0086610 {source="ncithesaurus:Mesothelium"} xref: Wikipedia:Mesothelium is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0012275 ! meso-epithelium relationship: part_of UBERON:0000042 ! serous membrane property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg" xsd:anyURI [Term] id: UBERON:0001137 name: dorsum def: "A major subdivision of an organism that is the entire part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane. In vertebrares this includes the vertebral column.." [BSPO:0000063, UBERONREF:0000006, Wikipedia:Dorsum_(anatomy)] subset: efo_slim subset: uberon_slim synonym: "back" EXACT [FMA:14181] synonym: "back of body proper" EXACT [FMA:14181] synonym: "dorsal part of organism" EXACT [] xref: BTO:0001713 xref: CALOHA:TS-2223 xref: EFO:0001405 xref: FMA:14181 xref: GAID:30 xref: galen:Back xref: MESH:D001415 xref: NCIT:C13062 xref: SCTID:123961009 xref: UMLS:C0004600 {source="ncithesaurus:Back"} xref: Wikipedia:Dorsum_(anatomy) is_a: UBERON:0000475 ! organism subdivision property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/432px-Gray-back.PNG" xsd:anyURI property_value: has_relational_adjective "dorsal" xsd:string property_value: taxon_notes "In humans, called the back, a large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body" xsd:string [Term] id: UBERON:0001138 name: superior mesenteric vein def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Superior_mesenteric_vein] subset: human_reference_atlas subset: uberon_slim synonym: "upper mesenteric vein" RELATED [BTO:0002783] synonym: "vena mesenterica superior" RELATED OMO:0003011 [Wikipedia:Superior_mesenteric_vein] xref: BTO:0002783 xref: EHDAA2:0001951 xref: EHDAA:5414 xref: EMAPA:18643 xref: FMA:14332 xref: MA:0002179 xref: NCIT:C33687 xref: SCTID:278031001 xref: UMLS:C0226742 {source="ncithesaurus:Superior_Mesenteric_Vein"} xref: VHOG:0000552 xref: Wikipedia:Superior_mesenteric_vein is_a: UBERON:0005617 ! mesenteric vein relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein relationship: part_of UBERON:0005806 ! portal system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001139 name: common iliac vein def: "A vein that drains the pelvis and lower limbs into the inferior vena cava." [MURDOCH:403, Wikipedia:Common_iliac_vein] subset: human_reference_atlas subset: uberon_slim synonym: "common iliac venous tree" EXACT [] synonym: "vena iliaca communis" RELATED OMO:0003011 [Wikipedia:Common_iliac_vein] xref: EMAPA:17874 xref: FMA:14333 xref: galen:CommonIliacVein xref: MA:0002143 xref: NCIT:C32359 xref: SCTID:181398004 xref: UMLS:C0226758 {source="ncithesaurus:Common_Iliac_Vein"} xref: Wikipedia:Common_iliac_vein is_a: UBERON:0005610 {source="MA"} ! iliac vein is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif" xsd:anyURI property_value: taxon_notes "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries." xsd:string {source="Wikipedia:Common_iliac_vein"} [Term] id: UBERON:0001140 name: renal vein def: "Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava." [ISBN:0-683-40008-8, MGI:csmith, MP:0011323] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "kidney vein" EXACT [OBOL:automatic] synonym: "renal venous tree" EXACT [] synonym: "vein of kidney" EXACT [OBOL:automatic] synonym: "venae renales" RELATED OMO:0003011 [Wikipedia:Renal_vein] xref: BTO:0002681 xref: EHDAA2:0001602 xref: EHDAA:8722 xref: EMAPA:28376 xref: FMA:14334 xref: GAID:544 xref: galen:RenalVein xref: MA:0002210 xref: MESH:D012082 xref: NCIT:C33462 xref: SCTID:116358006 xref: UMLS:C0035092 {source="ncithesaurus:Renal_Vein"} xref: Wikipedia:Renal_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted][Wikipedia:Renal_vein]." xsd:string {source="Wikipedia:Renal_vein"} property_value: external_ontology_notes "in EHDAA2, the renal vein is part of the kidney" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0001141 name: right renal vein def: "A renal vein that drains the right kidney." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim xref: EMAPA:37381 {source="MA:th"} xref: FMA:14335 xref: MA:0002212 xref: NCIT:C52695 xref: SCTID:116357001 xref: UMLS:C0508000 {source="ncithesaurus:Right_Renal_Vein"} is_a: UBERON:0001140 ! renal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "A vein that drains blood from the right kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Right_Renal_Vein"} [Term] id: UBERON:0001142 name: left renal vein def: "A renal vein that drains the left kidney." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim xref: EMAPA:37166 {source="MA:th"} xref: FMA:14336 xref: MA:0002211 xref: NCIT:C52693 xref: SCTID:116356005 xref: UMLS:C0508001 {source="ncithesaurus:Left_Renal_Vein"} is_a: UBERON:0001140 ! renal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "A vein that drains blood from the left kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Left_Renal_Vein"} [Term] id: UBERON:0001143 name: hepatic vein def: "Vein that carries blood away from the liver[ZFA]." [https://sourceforge.net/tracker/?func=detail&aid=3565355&group_id=76834&atid=1205376, Wikipedia:Hepatic_vein, ZFA:0000670] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hepatic veins" RELATED OMO:0003004 [] synonym: "liver vein" EXACT [OBOL:automatic] synonym: "vein of liver" EXACT [OBOL:automatic] synonym: "vena hepatica" EXACT OMO:0003011 [] synonym: "venae hepaticae" RELATED OMO:0003011 [Wikipedia:Hepatic_vein] xref: AAO:0010216 xref: EMAPA:19221 xref: FMA:14337 xref: GAID:534 xref: galen:HepaticVein xref: MA:0003015 xref: MESH:D006503 xref: NCIT:C32736 xref: SCTID:278191001 xref: TAO:0000670 xref: UMLS:C0019155 {source="ncithesaurus:Hepatic_Vein"} xref: Wikipedia:Hepatic_vein xref: XAO:0000387 xref: ZFA:0000670 is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0015796 ! liver blood vessel relationship: part_of UBERON:0006877 ! vasculature of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png" xsd:anyURI property_value: editor_note "todo - add developmental relationships for other taxa" xsd:string [Term] id: UBERON:0001144 name: testicular vein def: "A vein that carries deoxygenated blood from a single male gonad. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis." [http://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376, Wikipedia:Testicular_vein] subset: uberon_slim synonym: "male gonadal vein" EXACT [Wikipedia:Testicular_vein] synonym: "spermatic vein" EXACT [Wikipedia:Testicular_vein] synonym: "testicle vein" EXACT [OBOL:automatic] synonym: "testicular venous tree" EXACT [Wikipedia:Testicular_vein] synonym: "vein of testicle" EXACT [OBOL:automatic] synonym: "vena tesicularis" RELATED [BTO:0002678] synonym: "vena testicularis dextra" RELATED OMO:0003011 [Wikipedia:Testicular_vein] synonym: "vena testicularis sinistra" RELATED OMO:0003011 [Wikipedia:Testicular_vein] synonym: "venae spermaticae" RELATED OMO:0003011 [Wikipedia:Testicular_vein] xref: BTO:0002678 xref: EMAPA:18647 xref: FMA:14344 xref: MA:0002218 xref: MA:0002234 xref: NCIT:C53050 xref: SCTID:264496006 xref: UMLS:C0226718 {source="ncithesaurus:Spermatic_Vein"} xref: Wikipedia:Testicular_vein is_a: UBERON:0001638 ! vein is_a: UBERON:0015212 ! lateral structure property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray590.png" xsd:anyURI property_value: editor_note "TODO - check testicular vs spermatic vein (MA:0002218)" xsd:string property_value: taxon_notes "In humans, the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel" xsd:string [Term] id: UBERON:0001145 name: ovarian vein def: "A vein that carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries." [Wikipedia:Ovarian_vein] subset: uberon_slim synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic] synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system vein" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system vein" EXACT [OBOL:automatic] synonym: "ovary vein" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonad" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonada" EXACT [OBOL:automatic] synonym: "vein of gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of ovary" EXACT [OBOL:automatic] synonym: "vena ovarica dextra" RELATED OMO:0003011 [Wikipedia:Ovarian_vein] synonym: "vena ovarica sinistra" RELATED OMO:0003011 [Wikipedia:Ovarian_vein] xref: EMAPA:18644 xref: FMA:14346 xref: MA:0002186 xref: NCIT:C53058 xref: SCTID:278193003 xref: UMLS:C0226720 {source="ncithesaurus:Ovarian_Vein"} xref: Wikipedia:Ovarian_vein is_a: UBERON:0001638 ! vein is_a: UBERON:0015212 ! lateral structure property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg" xsd:anyURI [Term] id: UBERON:0001146 name: suprarenal vein def: "A vein that drains the adrenal gland." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/mouse-anatomy-ontology/issues/110] subset: uberon_slim synonym: "adrenal vein" RELATED [MA:0002081] xref: EHDAA2:0001966 xref: EHDAA:8731 xref: FMA:14348 xref: MA:0002081 xref: MA:0002229 xref: NCIT:C53129 xref: SCTID:278194009 xref: UMLS:C0226717 {source="ncithesaurus:Suprarenal_Vein"} xref: Wikipedia:Suprarenal_vein is_a: UBERON:0001638 ! vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI [Term] id: UBERON:0001148 name: median nerve def: "A nerve of the arm that originates from the brachial plexus and is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1." [Wikipedia:Median_nerve] comment: The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP] subset: human_reference_atlas subset: uberon_slim synonym: "nervus medianus" RELATED OMO:0003011 [Wikipedia:Median_nerve] xref: EHDAA2:0001086 xref: EHDAA:5648 xref: EMAPA:17277 xref: FMA:14385 xref: GAID:843 xref: MA:0001168 xref: MESH:D008475 xref: NCIT:C52815 xref: SCTID:181010001 xref: UMLS:C0025058 {source="ncithesaurus:Median_Nerve"} xref: Wikipedia:Median_nerve is_a: UBERON:0003433 ! arm nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif" xsd:anyURI [Term] id: UBERON:0001149 name: bare area of liver def: "A large triangular surface of the liver devoid of peritoneal covering." [Wikipedia:Bare_area_of_the_liver] synonym: "area nuda" RELATED [Wikipedia:Bare_area_of_the_liver] synonym: "area nuda (hepar)" EXACT [] synonym: "area nuda hepatis" EXACT [] synonym: "bare area" RELATED [Wikipedia:Bare_area_of_the_liver] synonym: "hepatic bare area" RELATED [EMAPA:17945] synonym: "liver bare area" EXACT [] xref: EMAPA:17945 xref: FMA:14480 xref: MA:0000359 xref: SCTID:279965008 xref: Wikipedia:Bare_area_of_the_liver is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001114 ! right lobe of liver property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0001150 name: body of pancreas def: "The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]." [Wikipedia:Body_of_pancreas] subset: human_reference_atlas subset: uberon_slim synonym: "corpus pancreatis" RELATED OMO:0003011 [Wikipedia:Body_of_pancreas] synonym: "pancreas body" EXACT [] synonym: "pancreas corpus" RELATED [] synonym: "pancreatic body" EXACT [] xref: EHDAA2:0001368 xref: EHDAA:9178 xref: EMAPA:17504 xref: FMA:14518 xref: MA:0000121 xref: NCIT:C12270 xref: SCTID:362202004 xref: UMLS:C0227582 {source="ncithesaurus:Body_of_the_Pancreas"} xref: VHOG:0000451 xref: Wikipedia:Body_of_pancreas is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000451", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001151 name: tail of pancreas def: "The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]." [Wikipedia:Tail_of_pancreas] subset: human_reference_atlas subset: uberon_slim synonym: "cauda pancreatis" RELATED OMO:0003011 [Wikipedia:Tail_of_pancreas] synonym: "left extremity of pancreas" EXACT [FMA:14519] synonym: "pancreas tail" EXACT [] synonym: "pancreatic tail" EXACT [FMA:14519] xref: EHDAA2:0001390 xref: EMAPA:17511 xref: FMA:14519 xref: MA:0000123 xref: NCIT:C12271 xref: SCTID:245382003 xref: UMLS:C0227590 {source="ncithesaurus:Tail_of_the_Pancreas"} xref: VHOG:0000452 xref: Wikipedia:Tail_of_pancreas is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000452", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001152 name: cystic duct def: "The tubular structure that conducts gall bladder contents from the gall bladder to the common bile duct." [ISBN:0-683-40008-8, MP:0009493] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ductus cysticus" RELATED OMO:0003011 [Wikipedia:Cystic_duct] xref: EHDAA2:0000333 xref: EHDAA:3045 xref: EMAPA:16841 xref: FMA:14539 xref: GAID:290 xref: galen:CysticDuct xref: MA:0000355 xref: MESH:D003549 xref: NCIT:C32421 xref: SCTID:245398005 xref: TAO:0005166 xref: UMLS:C0010672 {source="ncithesaurus:Cystic_Duct"} xref: VHOG:0000213 xref: Wikipedia:Cystic_duct xref: ZFA:0005166 is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct relationship: develops_from UBERON:0005604 {source="EHDAA2"} ! extrahepatic part of hepatic duct property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png" xsd:anyURI property_value: external_definition "Duct that connects the gall bladder and the common bile duct.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005166", ontology="TAO", source="ZFIN:Curator"} property_value: external_definition "The duct of the gallbladder which joins the common hepatic duct, thus forming the common biliary duct. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000213", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001153 name: caecum def: "A pouch in the digestive tract that connects the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum] comment: Taxon notes: in some herbivorous lizards, a cecum is present between small and large intestines[Kardong] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "blind intestine" RELATED [BTO:0000166] synonym: "blindgut" RELATED [BTO:0000166] synonym: "caeca" NARROW OMO:0003004 [NCBITaxon:8782] synonym: "caecum" EXACT [VHOG:0001559] synonym: "ceca" NARROW OMO:0003004 [NCBITaxon:8782] synonym: "cecum" EXACT [FMA:14541] synonym: "intestinum caecum" RELATED [BTO:0000166] synonym: "intestinum crassum caecum" EXACT [] synonym: "intestinum crassum cecum" RELATED [BTO:0000166] xref: BTO:0000166 xref: CALOHA:TS-0122 xref: EFO:0000850 xref: EHDAA2:0000206 xref: EHDAA:3913 xref: EMAPA:35197 xref: EV:0100397 xref: FMA:14541 xref: GAID:307 xref: galen:Cecum xref: MA:0000334 xref: MESH:D002432 xref: MIAA:0000288 xref: NCIT:C12381 xref: SCTID:181256004 xref: UMLS:C0007531 {source="ncithesaurus:Cecum"} xref: VHOG:0001559 xref: Wikipedia:Cecum is_a: UBERON:0009854 ! digestive tract diverticulum relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: has_relational_adjective "caecal" xsd:string property_value: taxon_notes "A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates." xsd:string {source="WP"} [Term] id: UBERON:0001154 name: vermiform appendix def: "A blind-ended tube connected to the cecum, from which it develops embryologically[WP]." [https://orcid.org/0000-0002-6826-8770, Wikipedia:Vermiform_appendix] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "apex of caecum" RELATED [EMAPA:35140] synonym: "apex of cecum" RELATED [VHOG:0001306] synonym: "appendix" EXACT [] synonym: "appendix vermiformis" EXACT OMO:0003011 [FMA:14542, FMA:TA] synonym: "appendix vermiformis" RELATED OMO:0003011 [Wikipedia:Vermiform_appendix] synonym: "caecal appendix" EXACT [] synonym: "cecal appendix" EXACT [] synonym: "vermix" BROAD [] xref: BTO:0000084 xref: CALOHA:TS-1267 xref: EFO:0000849 xref: EHDAA2:0000588 xref: EMAPA:35140 xref: EV:0100076 xref: EV:0100080 xref: FMA:14542 xref: GAID:308 xref: galen:AppendixVermiformis xref: MA:0001540 xref: MAT:0000287 xref: MESH:D001065 xref: MIAA:0000287 xref: NCIT:C12380 xref: SCTID:181255000 xref: UMLS:C0003617 {source="ncithesaurus:Vermiform_Appendix"} xref: VHOG:0001306 xref: Wikipedia:Vermiform_appendix is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: part_of UBERON:0000059 ! large intestine relationship: present_in_taxon NCBITaxon:40674 relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: external_definition "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix[FMA:14542]." xsd:string {source="FMA:14542"} property_value: has_relational_adjective "appendiceal" xsd:string property_value: homology_notes "A comparative anatomical approach reveals three apparent morphotypes of the cecal appendix, as well as appendix-like structures in some species that lack a true cecal appendix. Cladistic analyses indicate that the appendix has evolved independently at least twice (at least once in diprotodont marsupials and at least once in Euarchontoglires), shows a highly significant (P < 0.0001) phylogenetic signal in its distribution, and has been maintained in mammalian evolution for 80 million years or longer.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001306", ontology="VHOG", source="DOI:10.1111/j.1420-9101.2009.01809.x Smith HF, Fisher RE, Everett ML, Thomas AD, Randal Bollinger R, Parker W, Comparative anatomy and phylogenetic distribution of the mammalian cecal appendix. Journal of Evolutionary Biology (2009)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001155 name: colon def: "A portion of the large intestine before it becomes the rectum. In mammals, the colon is the most part of the large intestine, excluding the vermiform appendix, the rectum and the anal canal." [http://orcid.org/0000-0002-2825-0621, http://orcid.org/0000-0002-6601-2165, Wikipedia:Colon_(anatomy), ZFIN:curator] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hindgut" RELATED [] synonym: "large bowel" EXACT [] synonym: "posterior intestine" NARROW [] xref: AAO:0010400 xref: BTO:0000269 xref: CALOHA:TS-0158 xref: EFO:0000361 xref: EMAPA:18939 xref: EV:0100079 xref: FMA:14543 xref: GAID:309 xref: galen:Colon xref: MA:0000335 xref: MAP:0000001 xref: MAT:0000526 xref: MESH:D003106 xref: NCIT:C12382 xref: SCTID:302508007 xref: TAO:0000706 xref: UMLS:C0009368 {source="ncithesaurus:Colon"} xref: VHOG:0000648 xref: Wikipedia:Colon_(anatomy) xref: XAO:0000243 xref: ZFA:0000706 is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract relationship: part_of UBERON:0000059 {source="FMA"} ! large intestine property_value: editor_note "Some references do not consider the caecum to be part of the colon." xsd:string {xref="http://orcid.org/0000-0002-1572-1316"} property_value: editor_note "TODO - abstract this such that it legitimately covers all vertebrates" xsd:string property_value: external_definition "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010400", ontology="AAO", source="UBERON:0001155"} property_value: external_definition "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000706", ontology="TAO", source="ZFIN:curator"} property_value: function_notes "it extracts water and salt from solid wastes before they are eliminated from the body[WP]" xsd:string property_value: has_relational_adjective "colonic" xsd:string property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000648", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} property_value: taxon_notes "In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]" xsd:string property_value: taxon_notes "In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates[ZFIN]" xsd:string [Term] id: UBERON:0001156 name: ascending colon def: "Section of colon which is distal to the cecum and proximal to the transversecolon.[FMA,modified]." [FMA:14545, Wikipedia:Ascending_colon] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "colon ascendens" EXACT OMO:0003011 [Wikipedia:Ascending_colon] synonym: "spiral colon" RELATED SENSU [Wikipedia:Spiral_colon] xref: BTO:0000270 xref: CALOHA:TS-0057 xref: EFO:0000843 xref: EMAPA:35151 xref: FMA:14545 xref: galen:AscendingColon xref: MA:0001541 xref: MAT:0000311 xref: MESH:D044682 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000311 xref: NCIT:C12265 xref: SCTID:362162009 xref: UMLS:C0227375 {source="ncithesaurus:Ascending_Colon"} xref: Wikipedia:Ascending_colon is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: external_ontology_notes "in MA, this is a subclass of colon" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001157 name: transverse colon def: "The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]." [BTO:0000272, Wikipedia:Transverse_colon] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "colon transversum" EXACT OMO:0003011 [Wikipedia:Transverse_colon] xref: BTO:0000272 xref: CALOHA:TS-2052 xref: EFO:0000844 xref: EMAPA:35880 xref: FMA:14546 xref: galen:TransverseColon xref: MA:0001543 xref: MAT:0000312 xref: MESH:D044684 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000312 xref: NCIT:C12385 xref: SCTID:362163004 xref: UMLS:C0227386 {source="ncithesaurus:Transverse_Colon"} xref: Wikipedia:Transverse_colon is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0001158 name: descending colon def: "The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon." [BTO:0000641] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "colon descendens" EXACT OMO:0003011 [Wikipedia:Descending_colon] xref: BTO:0000641 xref: CALOHA:TS-2010 xref: EFO:0000845 xref: EMAPA:35285 xref: FMA:14547 xref: galen:DescendingColon xref: MA:0001542 xref: MAT:0000313 xref: MESH:D044683 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000313 xref: NCIT:C12268 xref: SCTID:362165006 xref: UMLS:C0227389 {source="ncithesaurus:Descending_Colon"} xref: Wikipedia:Descending_colon is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0001159 name: sigmoid colon def: "The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [Wikipedia:Sigmoid_colon] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "colon sigmoideum" RELATED OMO:0003011 [Wikipedia:Sigmoid_colon] synonym: "pelvic colon" RELATED [] synonym: "sigmoid colon" RELATED [] synonym: "sigmoid flexure" RELATED [] xref: BTO:0000645 xref: CALOHA:TS-2044 xref: EFO:0000846 xref: EMAPA:36391 xref: FMA:14548 xref: galen:SigmoidColon xref: MAT:0000314 xref: MESH:D012809 xref: MIAA:0000314 xref: NCIT:C12384 xref: NCIT:C33550 xref: SCTID:362166007 xref: UMLS:C0227391 {source="ncithesaurus:Sigmoid_Colon"} xref: UMLS:C0682612 {source="ncithesaurus:Sigmoid_Flexure"} xref: Wikipedia:Sigmoid_colon is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0001160 name: fundus of stomach def: "The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]." [GO:0014825, ISBN:0073040584, Wikipedia:Fundus_(stomach)] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "fundus gastricus" RELATED [BTO:0000502] synonym: "fundus gastricus (ventricularis)" EXACT [] synonym: "fundus gastricus ventricularis" RELATED [BTO:0000502] synonym: "fundus ventricularis" RELATED [BTO:0000502] synonym: "fundus ventriculi" RELATED [BTO:0000502] synonym: "gastric fundus" EXACT [] synonym: "stomach fundus" EXACT [] xref: BTO:0000502 xref: EFO:0002554 xref: EHDAA2:0001919 xref: EHDAA:4844 xref: EMAPA:17886 xref: FMA:14559 xref: GAID:320 xref: galen:GastricFundus xref: MA:0001612 xref: MESH:D005748 xref: NCIT:C12257 xref: SCTID:362139007 xref: UMLS:C0017129 {source="ncithesaurus:Fundus_of_the_Stomach"} xref: VHOG:0000421 xref: Wikipedia:Fundus_(stomach) is_a: UBERON:0009870 ! zone of stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI property_value: external_definition "The greater curvature of the stomach. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000421", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000421", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001161 name: body of stomach def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach] subset: uberon_slim synonym: "corpus gastricum" RELATED OMO:0003011 [BTO:0000505, Wikipedia:Body_of_stomach] synonym: "corpus gastricum (ventriculare)" EXACT [] synonym: "corpus ventriculare" RELATED [BTO:0000505] synonym: "corpus ventriculi" RELATED [BTO:0000505] synonym: "gastric body" EXACT [] synonym: "gastric corpus" RELATED [] synonym: "stomach body" EXACT [] xref: BTO:0000505 xref: EMAPA:35810 xref: FMA:14560 xref: galen:GastricCorpus xref: MA:0002559 xref: NCIT:C12258 xref: SCTID:362140009 xref: UMLS:C0227230 {source="ncithesaurus:Body_of_Stomach"} xref: Wikipedia:Body_of_stomach is_a: UBERON:0009870 {source="FMA"} ! zone of stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI property_value: editor_note "we include this as zone of stomach even though it is not distinguished by gland type" xsd:string [Term] id: UBERON:0001162 name: cardia of stomach alt_id: UBERON:0004712 def: "The part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]." [BTO:0000198, Wikipedia:Cardia] subset: pheno_slim synonym: "antrum cardiacum" RELATED OMO:0003011 [Wikipedia:Cardia] synonym: "cardiac antrum" RELATED [] synonym: "cardiac orifice" RELATED [Wikipedia:Cardia] synonym: "cardiac region" RELATED [Wikipedia:Cardia] synonym: "cardial orifice" RELATED [Wikipedia:Cardia] synonym: "cardial part of stomach" EXACT [] synonym: "gastric cardia" EXACT [] synonym: "pars cardiaca (gaster)" EXACT [] synonym: "pars cardiaca gastricae" EXACT OMO:0003011 [FMA:14561, FMA:TA] synonym: "stomach cardiac region" EXACT [MA:0001609] xref: BTO:0000198 xref: EMAPA:35811 xref: FMA:14561 xref: GAID:319 xref: MA:0001609 xref: MESH:D002299 xref: NCIT:C12256 xref: SCTID:362138004 xref: UMLS:C0007144 {source="ncithesaurus:Cardia"} xref: Wikipedia:Cardia is_a: UBERON:0009870 ! zone of stomach property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg" xsd:anyURI property_value: editor_note "There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that 'The gastric cardia is now clearly considered to be part of the stomach'[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP]" xsd:string property_value: editor_note "We follow Kardong in defining stomach regions by glands." xsd:string [Term] id: UBERON:0001163 name: lesser curvature of stomach def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [Wikipedia:Lesser_curvature_of_stomach] subset: uberon_slim synonym: "stomach lesser curvature" EXACT [] xref: EMAPA:37754 {source="MA:th"} xref: FMA:14572 xref: galen:LesserCurvatureOfStomach xref: MA:0001616 xref: NCIT:C12261 xref: SCTID:362133008 xref: UMLS:C0227221 {source="ncithesaurus:Lesser_Curvature"} xref: Wikipedia:Lesser_curvature_of_stomach is_a: UBERON:0009870 {source="FMA"} ! zone of stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI [Term] id: UBERON:0001164 name: greater curvature of stomach def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [Wikipedia:Greater_curvature_of_stomach] subset: uberon_slim synonym: "stomach greater curvature" EXACT [] xref: EMAPA:37753 {source="MA:th"} xref: FMA:14574 xref: galen:GreaterCurvatureOfStomach xref: MA:0001615 xref: NCIT:C12262 xref: SCTID:362134002 xref: UMLS:C0227223 {source="ncithesaurus:Greater_Curvature"} xref: Wikipedia:Greater_curvature_of_stomach is_a: UBERON:0009870 {source="FMA"} ! zone of stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI [Term] id: UBERON:0001165 name: pyloric antrum def: "The area at the bottom of the stomach on the caudal side of the pyloric canal that contains gastrin-producing G cells, which stimulate acid production, and the luminal pH-sensitive population of somatostatin-producing D cells." [ISBN:0-683-40008-8, MP:0010790] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "antrum" BROAD [] synonym: "antrum of stomach" EXACT [] synonym: "antrum of Willis" RELATED [BTO:0001732] synonym: "antrum pylori" RELATED [BTO:0001732] synonym: "antrum pyloricum" RELATED OMO:0003011 [BTO:0001732, Wikipedia:Pyloric_antrum] synonym: "gastric antrum" RELATED [BTO:0001732] synonym: "stomach antrum" RELATED [] synonym: "stomach pyloric antrum" EXACT [] xref: BTO:0001732 xref: EFO:0002555 xref: EMAPA:17891 xref: FMA:14579 xref: GAID:332 xref: galen:PyloricAntrum xref: MA:0001624 xref: MESH:D011706 xref: NCIT:C12259 xref: SCTID:362142001 xref: UMLS:C0034193 {source="ncithesaurus:Antrum_Pylori"} xref: Wikipedia:Pyloric_antrum is_a: UBERON:0009870 {source="FMA"} ! zone of stomach relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI [Term] id: UBERON:0001166 name: pylorus def: "The stomach tissue region surrounding and controlling the distal outlet of the stomach, which opens into the duodenum." [MGI:csmith, MP:0010785] subset: pheno_slim subset: uberon_slim synonym: "pars pylorica" EXACT OMO:0003011 [] synonym: "pars pylorica gastricae" EXACT OMO:0003011 [FMA:14581, FMA:TA] synonym: "pyloric part of stomach" EXACT [] synonym: "pyloric region" EXACT [] synonym: "stomach pyloric region" EXACT [EHDAA2:0001580] synonym: "valvula pylori" RELATED OMO:0003011 [Wikipedia:Pylorus] xref: BTO:0001146 xref: EHDAA2:0001580 xref: EHDAA:4860 xref: EMAPA:17631 xref: FMA:14581 xref: GAID:333 xref: galen:Pylorus xref: MA:0002560 xref: MESH:D011708 xref: NCIT:C12260 xref: SCTID:362143006 xref: UMLS:C0034196 {source="ncithesaurus:Pylorus"} xref: VHOG:0000420 xref: Wikipedia:Pylorus is_a: UBERON:0009870 ! zone of stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI property_value: editor_note "We follow Kardong in defining stomach regions by glands" xsd:string property_value: external_definition "The orifice which allows the passage from the stomach into the intestine. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000420", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "pyloric" xsd:string property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000420", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001167 name: wall of stomach def: "The layered structure that makes up the stomach, typiclly consists of a serous coat, a muscular coat, a mucous membrane, and other tissue layers in between." [MGI:csmith, MP:0010783] subset: pheno_slim synonym: "anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "gastric wall" EXACT [] synonym: "stomach anatomical wall" EXACT [OBOL:automatic] synonym: "stomach wall" EXACT [] synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "ventriculus wall" EXACT [OBOL:automatic] synonym: "wall of ventriculus" EXACT [OBOL:automatic] xref: EMAPA:35826 xref: FMA:14582 xref: galen:WallOfStomach xref: MA:0002692 xref: SCTID:279995000 is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001168 name: wall of small intestine def: "An anatomical wall that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic] synonym: "small bowel anatomical wall" EXACT [OBOL:automatic] synonym: "small bowel wall" EXACT [OBOL:automatic] synonym: "small intestinal wall" EXACT [] synonym: "small intestine anatomical wall" EXACT [OBOL:automatic] synonym: "small intestine wall" EXACT [] synonym: "wall of small bowel" EXACT [OBOL:automatic] xref: EMAPA:35785 xref: FMA:14615 xref: MA:0002696 xref: NCIT:C33573 xref: UMLS:C1519375 {source="ncithesaurus:Small_Intestinal_Wall_Tissue"} is_a: UBERON:0001262 ! wall of intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001169 name: wall of large intestine def: "An anatomical wall that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal wall" EXACT [] synonym: "large intestine anatomical wall" EXACT [OBOL:automatic] synonym: "large intestine wall" EXACT [] xref: EMAPA:35470 xref: FMA:14619 xref: MA:0002695 is_a: UBERON:0001262 ! wall of intestine relationship: part_of UBERON:0000059 ! large intestine [Term] id: UBERON:0001170 name: mesentery of small intestine def: "The peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]." [Wikipedia:Mesentery#Mesentery_.28proper.29] synonym: "mesentery (proper)" EXACT [Wikipedia:Mesentery] synonym: "mesentery proper" EXACT [FMA:14643] synonym: "small intestinal mesentery" EXACT [FMA:14643] synonym: "small intestine mesentery" EXACT [OBOL:automatic] xref: EMAPA:37745 {source="MA:th"} xref: FMA:14643 xref: MA:0001555 xref: SCTID:245456008 xref: Wikipedia:Mesentery#Mesentery_.28proper.29 is_a: UBERON:0001206 ! serosa of small intestine is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0007826 {source="FMA"} ! peritoneal mesentery [Term] id: UBERON:0001171 name: portal lobule def: "The triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992] subset: pheno_slim xref: FMA:14653 xref: MA:0002498 xref: NCIT:C33341 xref: UMLS:C0682620 {source="ncithesaurus:Portal_Lobule"} is_a: UBERON:0009911 {source="FMA"} ! lobule relationship: part_of UBERON:0001280 {source="MA", source="MP"} ! liver parenchyma [Term] id: UBERON:0001172 name: hepatic acinus def: "The functional unit of the liver, consisting of a mass of hepatocytes from adjacent liver lobules aligned around the hepatic arterioles and portal venules just as they anastomose into sinusoids." [http://orcid.org/0000-0002-6601-2165, http://www.vivo.colostate.edu/hbooks/pathphys/digestion/liver/histo_acinus.html] synonym: "liver acinus" EXACT [] synonym: "portal acinus" EXACT [] xref: EMAPA:35497 xref: FMA:14654 xref: MA:0002496 xref: NCIT:C32992 xref: SCTID:272214009 xref: UMLS:C0227519 {source="ncithesaurus:Liver_Acinus"} is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0001280 {source="cjm"} ! liver parenchyma [Term] id: UBERON:0001173 name: biliary tree def: "A complex network of conduits that begins with the canals of Hering (intralobar bile duct) and progressively merges into a system of interlobular, septal, and major ducts which then coalesce to form the extrahepatic bile ducts, which finally deliver bile to the intestine, and in some species to the gallbladder." [DOI:10.1002/ar.20664] comment: The path in many species is as follows: Bile canaliculi -> Canals of Hering (intralobar bile duct) -> interlobular bile ducts -> intrahepatic bile ducts -> left and right hepatic ducts merge to form -> common hepatic duct *exits liver* and joins -> cystic duct (from gall bladder) forming -> common bile duct -> joins with pancreatic duct -> forming ampulla of Vater -> enters duodenum [WP] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "biliary tract" RELATED [MA:0001273] xref: AAO:0011020 xref: EMAPA:35172 xref: FMA:14665 xref: MESH:D001659 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:181267003 xref: UMLS:C0005423 {source="ncithesaurus:Biliary_Tract"} xref: Wikipedia:Biliary_tract xref: XAO:0000455 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0004912 ! biliary bud relationship: mutually_spatially_disjoint_with UBERON:0002110 ! gallbladder relationship: part_of UBERON:0002294 ! biliary system property_value: external_definition "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011020", ontology="AAO", source="UBERON:0001173"} [Term] id: UBERON:0001174 name: common bile duct def: "The part of the biliary tree formed by the union of the cystic duct and the common hepatic duct." [MGI:csmith, MP:0009495] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ductus choledochus" RELATED OMO:0003011 [Wikipedia:Common_bile_duct] synonym: "ductus choledochus (biliaris)" EXACT [] xref: EHDAA2:0000303 xref: EHDAA:3981 xref: EMAPA:17201 xref: FMA:14667 xref: GAID:282 xref: galen:CommonBileDuct xref: MA:0001631 xref: MESH:D003135 xref: NCIT:C12698 xref: SCTID:362199009 xref: TAO:0005165 xref: UMLS:C0009437 {source="ncithesaurus:Common_Bile_Duct"} xref: VHOG:0000214 xref: Wikipedia:Common_bile_duct xref: ZFA:0005165 is_a: UBERON:0003703 ! extrahepatic bile duct relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png" xsd:anyURI property_value: external_definition "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005165", ontology="TAO", source="ZFIN:Curator"} property_value: external_definition "The duct formed by the union of the common hepatic and cystic ducts. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000214", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001175 name: common hepatic duct def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator] subset: pheno_slim subset: uberon_slim synonym: "ductus hepaticus communis" RELATED OMO:0003011 [Wikipedia:Common_hepatic_duct] synonym: "hepatic duct" RELATED [] xref: EMAPA:19101 xref: FMA:14668 xref: GAID:286 xref: MA:0002660 xref: MESH:D006500 xref: NCIT:C32356 xref: SCTID:245403006 xref: UMLS:C0019149 {source="ncithesaurus:Common_Hepatic_Duct"} xref: VHOG:0000220 xref: Wikipedia:Common_hepatic_duct is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct relationship: immediate_transformation_of UBERON:0010081 {evidence="definitional"} ! future common hepatic duct relationship: part_of UBERON:0005604 {source="MA"} ! extrahepatic part of hepatic duct property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg" xsd:anyURI property_value: editor_note "TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part" xsd:string property_value: external_definition "The duct which conveys the bile from the liver and unites with the cystic duct to form the common bile duct. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000220", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001176 name: right hepatic duct def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034] synonym: "ductus hepaticus dexter" RELATED OMO:0003011 [] xref: EHDAA2:0001727 xref: EHDAA:3992 xref: EMAPA:32797 xref: FMA:14669 xref: MA:0001639 xref: NCIT:C33476 xref: SCTID:245401008 xref: UMLS:C0227557 {source="ncithesaurus:Right_Hepatic_Duct"} xref: VHOG:0000217 is_a: UBERON:0003703 ! extrahepatic bile duct relationship: part_of UBERON:0005171 ! hepatic duct property_value: external_definition "The duct which drains bile from the right half of the liver and unites with the left hepatic duct to form the common hepatic duct. [adapted_from_http://www.medterms.com/script/main/art.asp?articlekey=26032][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000217", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001177 name: left hepatic duct def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035] synonym: "ductus hepaticus sinister" RELATED OMO:0003011 [] xref: EHDAA2:0000941 xref: EHDAA:3990 xref: EMAPA:32795 xref: FMA:14670 xref: MA:0001638 xref: NCIT:C32960 xref: SCTID:245400009 xref: UMLS:C0227560 {source="ncithesaurus:Left_Hepatic_Duct"} xref: VHOG:0000218 is_a: UBERON:0003703 ! extrahepatic bile duct relationship: part_of UBERON:0005171 ! hepatic duct property_value: external_definition "The duct which drains bile from the left half of the liver and unites with the right hepatic duct to form the common hepatic duct. [adapted_from_http://www.medterms.com/script/main/art.asp?articlekey=26032][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000218", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001178 name: visceral peritoneum def: "The inner layer of peritoneum that is wrapped around organs located inside the intraperitoneal space." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Peritoneum#Types] subset: uberon_slim subset: vertebrate_core synonym: "visceral serous membrane of peritoneum" EXACT [UBERON:cjm] xref: EMAPA:16592 xref: FMA:14703 xref: SCTID:362702003 xref: TAO:0005132 xref: VHOG:0001528 xref: Wikipedia:Visceral_peritoneum xref: ZFA:0005132 is_a: UBERON:0022350 ! visceral serous membrane relationship: part_of UBERON:0002358 ! peritoneum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png" xsd:anyURI [Term] id: UBERON:0001179 name: peritoneal cavity def: "Anatomical cavity bounded by visceral and parietal peritoneum." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/86, Wikipedia:Peritoneal_cavity] subset: pheno_slim subset: uberon_slim synonym: "cavitas peritonealis" RELATED OMO:0003011 [BTO:0001782, Wikipedia:Peritoneal_cavity] synonym: "saccus serosus peritonei" RELATED OMO:0003011 [Wikipedia:Peritoneal_cavity] xref: BTO:0001782 xref: EHDAA2:0001446 xref: EMAPA:16138 xref: FMA:14704 xref: GAID:24 xref: MA:0000054 xref: MESH:D010529 xref: NCIT:C12769 xref: SCTID:181616008 xref: UMLS:C1704247 {source="ncithesaurus:Peritoneal_Cavity"} xref: VHOG:0000852 xref: Wikipedia:Peritoneal_cavity is_a: UBERON:0035809 ! serous cavity relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom relationship: part_of UBERON:0035820 ! peritoneal sac property_value: external_definition "The potential space between the parietal and visceral layers of the peritoneum, which are normally in contact. The peritoneal cavity is divided into the greater and lesser sac. The greater sac is the peritoneal cavity, and the lesser sac is the omental bursa. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000852", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/peritoneal+cavity"} property_value: homology_notes "In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000852", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.205-206", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001180 name: superior recess of lesser sac alt_id: UBERON:0006299 synonym: "omental bursa superior recess" EXACT [MA:0000447] synonym: "recessus superior bursae omentalis" EXACT OMO:0003011 [FMA:14708, FMA:TA] synonym: "recessus superior omentalis" EXACT [FMA:14708] synonym: "superior omental bursa" EXACT [FMA:14708] synonym: "superior recess" EXACT [EHDAA2:0001958] synonym: "superior recess of omental bursa" EXACT [FMA:14708] xref: EHDAA2:0001958 xref: EHDAA:2343 xref: EMAPA:18049 xref: FMA:14708 xref: MA:0000447 xref: SCTID:263190002 is_a: UBERON:0002553 ! anatomical cavity relationship: develops_from UBERON:0005252 {source="EHDAA2"} ! lesser sac cavity relationship: part_of UBERON:0001341 {source="EMAPA"} ! lesser sac property_value: external_ontology_notes "classified as a cavity in EHDAA2, organ segment in FMA. We hedge and use a union" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0001181 name: inferior recess of lesser sac alt_id: UBERON:0006249 synonym: "inferior omental bursa" EXACT [FMA:14709] synonym: "inferior recess" EXACT [EHDAA2:0000825] synonym: "inferior recess of omental bursa" EXACT [FMA:14709] synonym: "omental bursa inferior recess" EXACT [MA:0000446] synonym: "recessus inferior bursae omentalis" EXACT OMO:0003011 [FMA:14709, FMA:TA] synonym: "recessus inferior omentalis" EXACT [FMA:14709] xref: EHDAA2:0000825 xref: EHDAA:6083 xref: EMAPA:18048 xref: FMA:14709 xref: MA:0000446 xref: SCTID:263261002 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0001182 name: superior mesenteric artery def: "Mesenteric artery that supplies the whole length of the small intestine except the superior part of the duodenum. It also supplies the cecum and the ascending part of the colon and about half the transverse part of the colon. It arises from the anterior surface of the aorta below the celiac artery at the level of the first lumbar vertebra." [MESH:A07.231.114.565.755] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "arteria mesenterica superior" RELATED OMO:0003011 [BTO:0002303, Wikipedia:Superior_mesenteric_artery] synonym: "superior mesenteric arterial tree" EXACT [] xref: BTO:0002303 xref: EHDAA2:0001949 xref: EHDAA:3358 xref: EHDAA:5313 xref: EMAPA:18619 xref: FMA:14749 xref: GAID:502 xref: galen:SuperiorMesentericArtery xref: MA:0002005 xref: MESH:D017538 xref: NCIT:C33685 xref: SCTID:362048004 xref: UMLS:C0162861 {source="ncithesaurus:Superior_Mesenteric_Artery"} xref: VHOG:0000754 xref: Wikipedia:Superior_mesenteric_artery is_a: UBERON:0005616 ! mesenteric artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: structure_notes "Origin: abdominal aorta; branches, inferior pancreaticoduodenal, jejunal, ileal, ileocolic, right colic, and middle colic arteries; distribution: small intestine, proximal half of colon" xsd:string {source="BTO"} [Term] id: UBERON:0001183 name: inferior mesenteric artery def: "Mesenteric artery that supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_artery] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "arteria mesenterica inferior" RELATED OMO:0003011 [BTO:0002302, Wikipedia:Inferior_mesenteric_artery] synonym: "IMA" BROAD OMO:0003000 [] synonym: "inferior mesenteric arterial tree" EXACT [] xref: BTO:0002302 xref: EHDAA2:0000817 xref: EHDAA:4345 xref: EMAPA:18618 xref: FMA:14750 xref: GAID:501 xref: galen:InferiorMesentericArtery xref: MA:0002004 xref: MESH:D017537 xref: NCIT:C32780 xref: SCTID:181341006 xref: UMLS:C0162860 {source="ncithesaurus:Inferior_Mesenteric_Artery"} xref: VHOG:0001116 xref: Wikipedia:Inferior_mesenteric_artery is_a: UBERON:0005616 ! mesenteric artery is_a: UBERON:0035039 ! rectal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001184 name: renal artery def: "One of two laterally paired arteries that supplies the kidneys. These are large arteries that branch from the dorsal aorta in primitive vertebrates." [ISBN:0073040584, Wikipedia:Renal_artery] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria renalis" RELATED OMO:0003011 [Wikipedia:Renal_artery] synonym: "renal arterial tree" EXACT [] synonym: "renal arteries" RELATED OMO:0003004 [] xref: AAO:0010223 xref: BTO:0001165 xref: EFO:0002552 xref: EHDAA2:0004100 xref: EHDAA:5321 xref: EHDAA:8594 xref: EMAPA:28373 xref: FMA:14751 xref: GAID:507 xref: galen:RenalArtery xref: MA:0002035 xref: MESH:D012077 xref: NCIT:C12778 xref: RETIRED_EHDAA2:0001600 xref: SCTID:181339005 xref: TAO:0000420 xref: UMLS:C0035065 {source="ncithesaurus:Renal_Artery"} xref: Wikipedia:Renal_artery xref: ZFA:0000420 is_a: UBERON:0012254 ! abdominal aorta artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: editor_note "renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability." xsd:string property_value: external_definition "Artery which supplies blood via branches to the gonads, oviducts, and kidneys.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010223", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted].[Wikipedia]" xsd:string {ontology="Wikipedia", source="Wikipedia:Renal_artery"} [Term] id: UBERON:0001185 name: right renal artery def: "Renal artery that supplies the right kidney." [https://orcid.org/0000-0002-6601-2165] comment: The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "right renal arterial tree" EXACT [] xref: EMAPA:37380 {source="MA:th"} xref: FMA:14752 xref: MA:0002037 xref: NCIT:C52740 xref: SCTID:36800007 xref: UMLS:C0226332 {source="ncithesaurus:Right_Renal_Artery"} is_a: UBERON:0001184 ! renal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001186 name: left renal artery def: "Renal artery that supplies the left kidney." [https://orcid.org/0000-0002-6601-2165] comment: The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP] subset: human_reference_atlas subset: pheno_slim synonym: "left renal arterial tree" EXACT [] xref: EMAPA:37098 {source="MA:th"} xref: FMA:14753 xref: MA:0002036 xref: NCIT:C52741 xref: SCTID:19215005 xref: UMLS:C0226333 {source="ncithesaurus:Left_Renal_Artery"} is_a: UBERON:0001184 ! renal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001187 name: testicular artery def: "One of a pair of arteries that is a branch of the abdominal aorta that supplies blood to a male gonad." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Testicular_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria testicularis" RELATED OMO:0003011 [Wikipedia:Testicular_artery] synonym: "internal spermatic" RELATED [Wikipedia:Testicular_artery] synonym: "internal spermatic arteries" RELATED [Wikipedia:Testicular_artery] synonym: "internal spermatic artery" RELATED [Wikipedia:Testicular_artery] synonym: "internal spermatic vessels" RELATED [Wikipedia:Testicular_artery] synonym: "spermatic arteries" RELATED [Wikipedia:Testicular_artery] synonym: "spermatic artery" RELATED [Wikipedia:Testicular_artery] synonym: "spermatic vessels" RELATED [Wikipedia:Testicular_artery] synonym: "testicular arterial tree" EXACT [] synonym: "testicular arteries" RELATED [Wikipedia:Testicular_artery] xref: EMAPA:18621 xref: FMA:14758 xref: MA:0002063 xref: SCTID:244281003 xref: Wikipedia:Testicular_artery is_a: UBERON:0010192 ! genital artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png" xsd:anyURI [Term] id: UBERON:0001188 name: right testicular artery def: "A testicular artery that supplies a right testicle." [OBOL:automatic] subset: human_reference_atlas synonym: "right spermatic artery" EXACT [] synonym: "trunk of right testicular arterial tree" EXACT [] xref: EMAPA:37382 {source="MA:th"} xref: FMA:14759 xref: MA:0002042 xref: NCIT:C52738 xref: UMLS:C0734076 {source="ncithesaurus:Right_Spermatic_Artery"} is_a: UBERON:0001187 ! testicular artery is_a: UBERON:0003468 ! ureteric segment of renal artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001189 name: left testicular artery def: "A testicular artery that supplies a left testicle." [OBOL:automatic] subset: human_reference_atlas synonym: "left spermatic artery" EXACT [] synonym: "trunk of left testicular arterial tree" EXACT [] xref: EMAPA:37099 {source="MA:th"} xref: FMA:14760 xref: MA:0002041 xref: NCIT:C52739 xref: UMLS:C0734077 {source="ncithesaurus:Left_Spermatic_Artery"} is_a: UBERON:0001187 ! testicular artery is_a: UBERON:0003468 ! ureteric segment of renal artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001190 name: ovarian artery def: "An artery that supplies an ovary." [OBOL:automatic] subset: human_reference_atlas subset: uberon_slim synonym: "arteria ovarica" RELATED OMO:0003011 [Wikipedia:Ovarian_artery] synonym: "ovarian arterial tree" EXACT [] xref: EMAPA:18620 xref: FMA:14761 xref: MA:0002012 xref: NCIT:C33242 xref: SCTID:244280002 xref: UMLS:C0226411 {source="ncithesaurus:Ovarian_Artery"} xref: Wikipedia:Ovarian_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png" xsd:anyURI property_value: external_definition "In human anatomy, the ovarian artery is a blood vessel that supplies oxygenated blood to the ovary. It arises from the abdominal aorta below the renal artery, and does not pass out of the abdomiproperty_value external_definitioncavity. It can be found in the suspensory ligament of the ovary. [WP]." xsd:string {source="Wikipedia:Ovarian_artery"} [Term] id: UBERON:0001191 name: common iliac artery def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [Wikipedia:Common_iliac_artery] comment: See notes for parent class subset: human_reference_atlas subset: uberon_slim synonym: "arteria iliaca communis" RELATED OMO:0003011 [Wikipedia:Common_iliac_artery] synonym: "common iliac arterial tree" EXACT [] xref: EHDAA2:0000311 xref: EHDAA:2553 xref: EMAPA:17310 xref: FMA:14764 xref: MA:0001972 xref: NCIT:C32357 xref: SCTID:362050007 xref: UMLS:C1261084 {source="ncithesaurus:Common_Iliac_Artery"} xref: Wikipedia:Common_iliac_artery is_a: UBERON:0005609 {source="MA"} ! iliac artery is_a: UBERON:0012254 ! abdominal aorta artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6e/Iliac_artery_bifurcation_and_aorta.PNG" xsd:anyURI [Term] id: UBERON:0001192 name: left gastric artery def: "An artery that arises from the celiac artery and supplies the stomach." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: uberon_slim synonym: "arteria gastrica sinistra" RELATED OMO:0003011 [Wikipedia:Left_gastric_artery] synonym: "gastric artery" RELATED [FMA:14768] xref: EMAPA:35374 xref: FMA:14768 xref: galen:LeftGastricArtery xref: MA:0001961 xref: NCIT:C32654 xref: SCTID:244267000 xref: UMLS:C0226299 {source="ncithesaurus:Gastric_Artery"} xref: Wikipedia:Left_gastric_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI [Term] id: UBERON:0001193 name: hepatic artery def: "An artery that supplies the liver." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Hepatic_artery_proper] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "arteria hepatica" RELATED [BTO:0004307] synonym: "arteria hepatica propria" EXACT OMO:0003011 [] xref: BTO:0004307 xref: EMAPA:17859 xref: FMA:14769 xref: GAID:496 xref: galen:HepaticArtery xref: MA:0001963 xref: MESH:D006499 xref: NCIT:C32729 xref: SCTID:76015000 xref: TAO:0005161 xref: UMLS:C0019145 {source="ncithesaurus:Hepatic_Artery"} xref: ZFA:0005161 is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "currently defined in a generic fashion." xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4c/Common_and_proper_hepatic_artery.png" xsd:anyURI property_value: external_definition "Artery that supplies blood to the liver.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005161", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001194 name: splenic artery def: "An artery that supplies the spleen." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: uberon_slim synonym: "arteria lienalis" RELATED OMO:0003011 [Wikipedia:Splenic_artery] synonym: "arteria splenica" EXACT OMO:0003011 [Wikipedia:Splenic_artery] synonym: "lienal artery" EXACT [MA:0001991] xref: EMAPA:19216 xref: FMA:14773 xref: GAID:510 xref: galen:SplenicArtery xref: MA:0001991 xref: MA:0003177 xref: MESH:D013157 xref: NCIT:C33597 xref: SCTID:244266009 xref: UMLS:C0037996 {source="ncithesaurus:Splenic_Artery"} xref: Wikipedia:Splenic_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/268" xsd:anyURI [Term] id: UBERON:0001195 name: inferior pancreaticoduodenal artery def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [Wikipedia:Inferior_pancreaticoduodenal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteriae pancreaticoduodenales inferiores" RELATED OMO:0003011 [Wikipedia:Inferior_pancreaticoduodenal_artery] synonym: "inferior pancreatico-duodenal artery" EXACT [] xref: EMAPA:37086 {source="MA:th"} xref: FMA:14805 xref: MA:0002014 xref: NCIT:C32786 xref: SCTID:244273004 xref: UMLS:C0226319 {source="ncithesaurus:Inferior_Pancreatico-duodenal_artery"} xref: Wikipedia:Inferior_pancreaticoduodenal_artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009658 ! pancreaticoduodenal artery relationship: part_of UBERON:0001182 ! superior mesenteric artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray533.png" xsd:anyURI [Term] id: UBERON:0001196 name: middle colic artery def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers' breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [Wikipedia:Middle_colic_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria colica media" RELATED OMO:0003011 [Wikipedia:Middle_colic_artery] xref: EMAPA:37106 {source="MA:th"} xref: FMA:14810 xref: galen:MiddleColicArtery xref: MA:0002007 xref: NCIT:C52981 xref: SCTID:244276007 xref: UMLS:C0226328 {source="ncithesaurus:Middle_Colic_Artery"} xref: Wikipedia:Middle_colic_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001197 name: ileocolic artery def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [Wikipedia:Ileocolic_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria ileocolica" RELATED OMO:0003011 [Wikipedia:Ileocolic_artery] xref: EMAPA:37083 {source="MA:th"} xref: FMA:14815 xref: galen:IleocolicArtery xref: MA:0001970 xref: NCIT:C32760 xref: SCTID:244279000 xref: UMLS:C0226323 {source="ncithesaurus:Ileo-colic_Artery"} xref: Wikipedia:Ileocolic_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png" xsd:anyURI [Term] id: UBERON:0001198 name: superior suprarenal artery def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [Wikipedia:Superior_suprarenal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteriae suprarenales superiores" EXACT OMO:0003011 [Wikipedia:Superior_suprarenal_artery] synonym: "superior adrenal branch of inferior phrenic artery" EXACT [] synonym: "superior suprarenal branch of inferior phrenic artery" EXACT [] xref: EMAPA:37122 {source="MA:th"} xref: FMA:14863 xref: MA:0002057 xref: NCIT:C52736 xref: SCTID:303424001 xref: UMLS:C0580876 {source="ncithesaurus:Superior_Suprarenal_Artery"} xref: Wikipedia:Superior_suprarenal_artery is_a: UBERON:0005624 ! suprarenal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png" xsd:anyURI [Term] id: UBERON:0001199 name: mucosa of stomach def: "The mucosal layer that lines the stomach." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "gastric mucosa" EXACT [] synonym: "gastric mucous membrane" EXACT [] synonym: "Magenschleimhaut" RELATED [BTO:0001308] synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic] synonym: "mucosa of ventriculus" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach" EXACT [] synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic] synonym: "stomach mucosa" EXACT [] synonym: "stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach mucous membrane" EXACT [OBOL:automatic] synonym: "stomach organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (gaster)" EXACT [] synonym: "tunica mucosa gastricae" EXACT OMO:0003011 [FMA:14907, FMA:TA] synonym: "tunica mucosa gastris" RELATED OMO:0003011 [BTO:0001308, Wikipedia:Gastric_mucosa] synonym: "ventriculus mucosa" EXACT [OBOL:automatic] synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic] synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic] synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic] xref: BTO:0001308 xref: CALOHA:TS-0404 xref: EMAPA:35817 xref: FMA:14907 xref: GAID:321 xref: galen:GastricMucosa xref: MA:0002683 xref: MESH:D005753 xref: NCIT:C32656 xref: SCTID:362131005 xref: UMLS:C0017136 {source="ncithesaurus:Gastric_Mucosa"} xref: Wikipedia:Gastric_mucosa is_a: UBERON:0004786 ! gastrointestinal system mucosa relationship: part_of UBERON:0001167 ! wall of stomach property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/1/1c/Normal_gastric_mucosa_intermed_mag.jpg" xsd:anyURI property_value: external_definition "The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general lining of the stomach. [WP,unvetted][Wikipedia:Gastric_mucosa]." xsd:string {source="Wikipedia:Gastric_mucosa"} [Term] id: UBERON:0001200 name: submucosa of stomach def: "The fibrous connective tissue layer beneath the stomach mucosa." [MGI:csmith, MP:0010794] subset: pheno_slim synonym: "gastric submucosa" EXACT [] synonym: "stomach submucosa" EXACT [] synonym: "submucosa of ventriculus" EXACT [OBOL:automatic] synonym: "submucous layer of stomach" RELATED [BTO:0002110] synonym: "tela submucosa (gaster)" EXACT [] synonym: "tela submucosa gastricae" EXACT OMO:0003011 [FMA:14908, FMA:TA] synonym: "tela submucosa ventriculi" RELATED [BTO:0002110] synonym: "ventriculus submucosa" EXACT [OBOL:automatic] xref: BTO:0002110 xref: EMAPA:35825 xref: FMA:14908 xref: MA:0002685 xref: NCIT:C32663 xref: SCTID:52459002 xref: UMLS:C0227211 {source="ncithesaurus:Gastric_Submucosa"} is_a: UBERON:0018257 ! submucosa of digestive tract relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0001201 name: serosa of stomach def: "The outermost layer of the stomach wall, consisting of layers of connective tissue continuous with the peritoneum." [MGI:csmith, MP:0010793] subset: pheno_slim synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus serous membrane" EXACT [OBOL:automatic] synonym: "gastric serosa" RELATED [] synonym: "gastric wall serosa" EXACT [OBOL:automatic] synonym: "gastric wall serous membrane" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "serosa of gastric wall" EXACT [OBOL:automatic] synonym: "serosa of stomach anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of stomach wall" EXACT [OBOL:automatic] synonym: "serosa of ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of ventriculus wall" EXACT [OBOL:automatic] synonym: "serosa of wall of stomach" EXACT [OBOL:automatic] synonym: "serosa of wall of ventriculus" EXACT [OBOL:automatic] synonym: "serous coat of stomach" EXACT [] synonym: "serous membrane of anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "serous membrane of gastric wall" EXACT [OBOL:automatic] synonym: "serous membrane of stomach anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of stomach wall" EXACT [OBOL:automatic] synonym: "serous membrane of ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of ventriculus wall" EXACT [OBOL:automatic] synonym: "serous membrane of wall of stomach" EXACT [OBOL:automatic] synonym: "serous membrane of wall of ventriculus" EXACT [OBOL:automatic] synonym: "stomach anatomical wall serosa" EXACT [OBOL:automatic] synonym: "stomach anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "stomach serosa" EXACT [] synonym: "stomach wall serosa" EXACT [OBOL:automatic] synonym: "stomach wall serous membrane" EXACT [OBOL:automatic] synonym: "tunica serosa (gaster)" EXACT [] synonym: "tunica serosa gastricae" EXACT OMO:0003011 [FMA:14914, FMA:TA] synonym: "ventriculus anatomical wall serosa" EXACT [OBOL:automatic] synonym: "ventriculus anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "ventriculus wall serosa" EXACT [OBOL:automatic] synonym: "ventriculus wall serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of stomach" EXACT [] synonym: "wall of stomach serosa" EXACT [OBOL:automatic] synonym: "wall of stomach serous membrane" EXACT [OBOL:automatic] synonym: "wall of ventriculus serosa" EXACT [OBOL:automatic] synonym: "wall of ventriculus serous membrane" EXACT [OBOL:automatic] xref: EMAPA:35822 xref: FMA:14914 xref: MA:0001626 xref: NCIT:C32662 xref: SCTID:1353004 xref: UMLS:C1517453 {source="ncithesaurus:Gastric_Serosal_Surface"} is_a: UBERON:0004782 ! gastrointestinal system serosa relationship: part_of UBERON:0001167 ! wall of stomach property_value: editor_note "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001202 name: pyloric sphincter def: "A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "pyloric valve" EXACT [Wikipedia:Pylorus] xref: AAO:0011093 xref: EMAPA:19251 xref: FMA:14916 xref: MA:0002952 xref: NCIT:C33433 xref: SCTID:268073008 xref: UMLS:C0227238 {source="ncithesaurus:Pyloric_Sphincter"} xref: VHOG:0001466 xref: XAO:0000457 is_a: UBERON:0011185 ! gastrointestinal sphincter relationship: never_in_taxon NCBITaxon:8355 relationship: part_of UBERON:0001166 ! pylorus property_value: homology_notes "(...) the adult Xenopus stomach exhibits both glandular and aglandular regions and a distinct pyloric sphincter similar to that of the amniotic vertebrates (...).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001466", ontology="VHOG", source="DOI:10.1046/j.1525-142x.2000.00076.x", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001203 name: muscularis mucosae of stomach def: "The thin layer of smooth muscle in the mucosal layer of the stomach that functions to agitate the surface area stomach mucosa by moving the villi back and forth." [MGI:csmith, MP:0010806] subset: pheno_slim synonym: "gastric muscularis mucosa" EXACT [] synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT [] synonym: "lamina muscularis mucosae gastricae" EXACT OMO:0003011 [FMA:14924, FMA:TA] synonym: "lamina muscularis of gastric mucosa" EXACT [] synonym: "muscular coat of stomach" EXACT [] synonym: "stomach muscularis mucosa" EXACT [] synonym: "tunica muscularis gastricae" EXACT OMO:0003011 [FMA:14924, FMA:TA] xref: EMAPA:35818 xref: FMA:14924 xref: MA:0002684 xref: NCIT:C32658 xref: SCTID:64551004 xref: UMLS:C0227200 {source="ncithesaurus:Gastric_Muscularis_Mucosa"} is_a: UBERON:0004222 ! stomach smooth muscle is_a: UBERON:0006676 ! muscularis mucosa relationship: part_of UBERON:0001199 ! mucosa of stomach property_value: function_notes "agitate the surface area stomach mucosa by moving the villi back and forth" xsd:string [Term] id: UBERON:0001204 name: mucosa of small intestine def: "A mucosa that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic] synonym: "mucosa of small bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of small intestine" EXACT [] synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic] synonym: "small bowel mucosa" EXACT [OBOL:automatic] synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "small bowel mucous membrane" EXACT [OBOL:automatic] synonym: "small bowel organ mucosa" EXACT [OBOL:automatic] synonym: "small intestinal mucosa" EXACT [] synonym: "small intestine mucosa" EXACT [] synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "small intestine mucous membrane" EXACT [] synonym: "small intestine organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (intestinum tenue)" EXACT [] synonym: "tunica mucosa intestini tenuis" EXACT OMO:0003011 [FMA:14933, FMA:TA] xref: BTO:0001259 xref: CALOHA:TS-0941 xref: EMAPA:35780 xref: FMA:14933 xref: MA:0002686 xref: NCIT:C33568 xref: SCTID:362144000 xref: UMLS:C0227261 {source="ncithesaurus:Small_Intestinal_Mucosa"} is_a: UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0001168 ! wall of small intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001205 name: submucosa of small intestine def: "Submucosal tissue in the small intestines." [Wikipedia:Small_intestinal_submucosa] subset: uberon_slim synonym: "small bowel submucosa" EXACT [OBOL:automatic] synonym: "small intestinal submucosa" EXACT [] synonym: "small intestine submucosa" EXACT [] synonym: "submucosa of small bowel" EXACT [OBOL:automatic] synonym: "tela submucosa (intestinum tenue)" EXACT [] synonym: "tela submucosa intestini tenuis" EXACT OMO:0003011 [BTO:0002112] xref: BTO:0002112 xref: EMAPA:37564 {source="MA:th"} xref: FMA:14934 xref: MA:0001562 xref: NCIT:C33572 xref: SCTID:691000 xref: UMLS:C0227268 {source="ncithesaurus:Small_Intestinal_Submucosa"} xref: Wikipedia:Small_intestinal_submucosa is_a: UBERON:0009566 ! intestinal submucosa relationship: part_of UBERON:0001168 ! wall of small intestine [Term] id: UBERON:0001206 name: serosa of small intestine def: "A serous membrane that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] synonym: "serosa of small bowel" EXACT [OBOL:automatic] synonym: "serous coat of small intestine" EXACT [] synonym: "serous membrane of small bowel" EXACT [OBOL:automatic] synonym: "serous membrane of small intestine" EXACT [OBOL:automatic] synonym: "small bowel serosa" EXACT [OBOL:automatic] synonym: "small bowel serous membrane" EXACT [OBOL:automatic] synonym: "small intestinal serosa" EXACT [] synonym: "small intestine serosa" EXACT [] synonym: "small intestine serous membrane" EXACT [OBOL:automatic] synonym: "tunica serosa (intestinum tenue)" EXACT [] synonym: "tunica serosa intestini tenuis" EXACT OMO:0003011 [FMA:14938, FMA:TA] synonym: "visceral peritoneum of small intestine" EXACT [] xref: EMAPA:37561 {source="MA:th"} xref: FMA:14938 xref: MA:0001558 xref: SCTID:8266009 is_a: UBERON:0001243 ! serosa of intestine relationship: part_of UBERON:0001168 ! wall of small intestine relationship: part_of UBERON:0001243 ! serosa of intestine property_value: structure_notes "duodenum, 1st part serosa, 2nd - 4th adventitia" xsd:string [Term] id: UBERON:0001207 name: mucosa of large intestine def: "A mucosa that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] synonym: "large intestinal mucosa" EXACT [] synonym: "large intestine mucosa" EXACT [] synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "large intestine mucous membrane" EXACT [OBOL:automatic] synonym: "large intestine organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic] synonym: "mucous membrane of large intestine" EXACT [] synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic] synonym: "tunica mucosa intestini crassi" EXACT OMO:0003011 [FMA:14969, FMA:TA] xref: CALOHA:TS-2106 xref: EMAPA:35467 xref: FMA:14969 xref: MA:0002688 xref: NCIT:C32926 xref: UMLS:C0734203 {source="ncithesaurus:Large_Intestinal_Mucosa"} is_a: UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001208 name: submucosa of large intestine def: "A submucosa that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] synonym: "large intestinal submucosa" EXACT [] synonym: "large intestine submucosa" EXACT [] synonym: "submucous layer of large intestine" RELATED [BTO:0002111] synonym: "tela submucosa intestini crassi" EXACT OMO:0003011 [FMA:14970, FMA:TA] xref: BTO:0002111 xref: EMAPA:37560 {source="MA:th"} xref: FMA:14970 xref: MA:0002690 xref: NCIT:C32930 xref: UMLS:C0734204 {source="ncithesaurus:Large_Intestinal_Submucosa"} is_a: UBERON:0009566 ! intestinal submucosa relationship: part_of UBERON:0001169 ! wall of large intestine [Term] id: UBERON:0001209 name: serosa of large intestine def: "A serous membrane that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] synonym: "large intestinal serosa" EXACT [] synonym: "large intestine serosa" EXACT [] synonym: "large intestine serous membrane" EXACT [OBOL:automatic] synonym: "serous coat of large intestine" EXACT [] synonym: "serous membrane of large intestine" EXACT [OBOL:automatic] synonym: "tunica serosa intestini crassi" EXACT OMO:0003011 [FMA:14975, FMA:TA] synonym: "visceral peritoneum of large intestine" EXACT [] xref: EMAPA:37557 {source="MA:th"} xref: FMA:14975 xref: MA:0001546 xref: NCIT:C32929 xref: UMLS:C1517727 {source="ncithesaurus:Large_Intestinal_Serosal_Surface"} is_a: UBERON:0001243 ! serosa of intestine relationship: part_of UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001243 ! serosa of intestine property_value: editor_note "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001210 name: muscularis mucosae of small intestine def: "A muscularis mucosa that is part of a small intestine." [OBOL:automatic] synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT [] synonym: "lamina muscularis mucosae intestini tenuis" EXACT OMO:0003011 [FMA:15051, FMA:TA] synonym: "lamina muscularis of small intestine mucous membrane" EXACT [] synonym: "small intestine muscularis mucosa" EXACT [] xref: EMAPA:35781 xref: FMA:15051 xref: MA:0002687 xref: NCIT:C33570 xref: SCTID:36401004 xref: UMLS:C0227262 {source="ncithesaurus:Small_Intestinal_Muscularis_Mucosa"} is_a: UBERON:0001240 ! muscularis mucosae of intestine is_a: UBERON:0004239 ! small intestine smooth muscle relationship: part_of UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine [Term] id: UBERON:0001211 name: Peyer's patch def: "The protruding lymphoid tissue located on the mucosa of the intestine that is composed of densely packed B cell follicles." [http://orcid.org/0000-0002-6601-2165, MESH:A10.549.600, MP:0000696, PMID:15841100] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "aggregated lymphoid follicle of intestine" RELATED [] synonym: "aggregated lymphoid nodule" RELATED [] synonym: "noduli lymphoidei aggregati" EXACT OMO:0003011 [] synonym: "Peyers gland" RELATED [BTO:0001784] synonym: "Peyers patch" RELATED [BTO:0001784] xref: BTO:0001784 xref: CALOHA:TS-0780 xref: EFO:0001381 xref: EMAPA:19028 xref: GAID:950 xref: MA:0000137 xref: MESH:D010581 xref: NCIT:C12771 xref: UMLS:C0031272 {source="ncithesaurus:Peyer_s_Patch"} xref: Wikipedia:Peyer's_patch is_a: UBERON:0001962 {source="FMA", source="MA"} ! gut-associated lymphoid tissue relationship: never_in_taxon NCBITaxon:8459 {source="PMID:PMID:20181529"} relationship: part_of UBERON:0000030 {comment="EDITOR_NOTE check this"} ! lamina propria relationship: part_of UBERON:0001242 ! intestinal mucosa property_value: external_ontology_notes "FMA has [set of?] [aggregated,small] lymphoid [follice,nodule] of [colon, SI, I, etc]" xsd:string {external_ontology="FMA"} property_value: external_ontology_notes "Pp is a syn for Aggregated lymphoid follicle of small intestine; but MA uses Pp as covering both SI and LI. MA also includes follicle as a part. WP says duodenum and jejunum lack PPs" xsd:string {external_ontology="MA"} property_value: taxon_notes "Reptiles have accumulations of lymphocytes in their guts that may be primitive Peyer's patches (Zapata and Solas)." xsd:string [Term] id: UBERON:0001212 name: duodenal gland def: "A compound tubular submucosal gland found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]." [Wikipedia:Brunner's_glands] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "Brunner's gland" EXACT [FMA:15060] synonym: "gland of Brunner" EXACT [FMA:15060] synonym: "glandula duodenales" RELATED OMO:0003011 [BTO:0002376] synonym: "glandula duodenales Brunneri" RELATED OMO:0003011 [BTO:0002376] synonym: "submucosal gland of duodenum" EXACT [] xref: BTO:0002376 xref: EMAPA:36522 xref: FMA:15060 xref: GAID:314 xref: MA:0001551 xref: MESH:D002011 xref: NCIT:C13010 xref: SCTID:41298001 xref: UMLS:C0006323 {source="ncithesaurus:Brunner_s_Gland"} xref: Wikipedia:Brunner's_glands is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0011148 {notes="compound tubular"} ! submucosal gland relationship: part_of UBERON:0002114 ! duodenum property_value: editor_note "currently defined as equivalent to any submucosal gland in the duodenum." xsd:string property_value: taxon_notes "Said to be absent outside mammlian (Andrew 1959) but Ziswiler and Farner (1972) noted similar glands at the gastroduodenal junction of some birds" xsd:string {source="ISBN:9780521617147"} [Term] id: UBERON:0001213 name: intestinal villus alt_id: UBERON:0007607 def: "The tiny hair-like projections that protrude from the inside of the small intestine that contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; the villi increase the absorptive surface area of the small intestine by approximately 30-fold." [MGI:csmith, MGI:rbabiuk, MP:0008108] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "enteric villi" EXACT OMO:0003004 [HP:0011473] synonym: "enteric villous" EXACT [HP:0011473] synonym: "enteric villus" EXACT [HP:0011473] synonym: "intestinal villi" EXACT OMO:0003004 [ZFA:0005125] synonym: "intestinal villus layer" RELATED [] synonym: "small intestine villus" RELATED [MA:0001563] synonym: "villi intestinales" EXACT OMO:0003004 [] synonym: "villi intestinales" RELATED OMO:0003011 [Wikipedia:Intestinal_villus] synonym: "villus" EXACT [BTO:0003121] synonym: "villus intestinalis (intestinum tenue)" EXACT [FMA:15072] xref: BTO:0003121 xref: EMAPA:35784 xref: FMA:15072 xref: MA:0001563 xref: NCIT:C33874 xref: SCTID:23230007 xref: TAO:0005125 xref: UMLS:C1519988 {source="ncithesaurus:Villus"} xref: Wikipedia:Intestinal_villus xref: ZFA:0005125 is_a: UBERON:0004923 {source="FMA"} ! organ component layer relationship: part_of UBERON:0001277 {source="ZFA"} ! intestinal epithelium relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg" xsd:anyURI property_value: editor_note "in mammals, villi are (largely?) absent from the large intestine, so we treat this as equivalent to small intestinal villus. small/large subdivision may not make sense for all species for which this is present (see ZFA). Note that VHOG quotes ISBN:978-0030223693 as suggesting there are some villi in the large intestine" xsd:string property_value: external_definition "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. No crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. Crosnier et al. 2005[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005125", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "the BTO class refers to a generic villous" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0001214 name: pancreatic tributary of splenic vein def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [Wikipedia:Pancreatic_vein] subset: human_reference_atlas subset: uberon_slim synonym: "pancreatic vein" EXACT [] xref: EMAPA:37678 {source="MA:th"} xref: FMA:15388 xref: MA:0002189 xref: NCIT:C53059 xref: SCTID:264492008 xref: UMLS:C0226743 {source="ncithesaurus:Pancreatic_Vein"} xref: Wikipedia:Pancreatic_vein is_a: UBERON:0002017 ! portal vein relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "see also MA:0002165 ! lieno-pancreatic vein" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001215 name: inferior mesenteric vein def: "A blood vessel that drains blood from the large intestine that usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_vein] subset: human_reference_atlas subset: uberon_slim synonym: "lower mesenteric vein" RELATED [BTO:0002782] synonym: "vena mesenterica inferior" RELATED OMO:0003011 [Wikipedia:Inferior_mesenteric_vein] xref: BTO:0002782 xref: EHDAA2:0000819 xref: EHDAA:8712 xref: EMAPA:18642 xref: FMA:15391 xref: MA:0002178 xref: NCIT:C32782 xref: SCTID:281055007 xref: UMLS:C0226754 {source="ncithesaurus:Inferior_Mesenteric_Vein"} xref: VHOG:0001118 xref: Wikipedia:Inferior_mesenteric_vein is_a: UBERON:0005617 ! mesenteric vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001216 name: jejunal vein def: "A tributary of the superior mesenteric vein that drains the jejunum." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Jejunal_veins] subset: human_reference_atlas synonym: "venae jejunales" RELATED OMO:0003011 [Wikipedia:Jejunal_veins] xref: EMAPA:37160 {source="MA:th"} xref: FMA:15402 xref: MA:0002153 xref: Wikipedia:Jejunal_veins is_a: UBERON:0002017 {source="FMA"} ! portal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI [Term] id: UBERON:0001217 name: ileal vein def: "The veins that drain blood from the ileum into the superior mesenteric vein." [ncithesaurus:Ileal_Vein] subset: human_reference_atlas xref: EMAPA:37149 {source="MA:th"} xref: FMA:15405 xref: MA:0002140 xref: NCIT:C53046 xref: UMLS:C1301431 {source="ncithesaurus:Ileal_Vein"} xref: Wikipedia:Ileal_veins is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001218 name: middle colic vein def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [Wikipedia:Middle_colic_vein] subset: human_reference_atlas subset: uberon_slim synonym: "vena colica media" RELATED OMO:0003011 [Wikipedia:Middle_colic_vein] synonym: "vena colica media (intermedia)" EXACT [] xref: EMAPA:37174 {source="MA:th"} xref: FMA:15406 xref: MA:0002181 xref: SCTID:9018004 xref: Wikipedia:Middle_colic_vein is_a: UBERON:0002017 ! portal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001219 name: ileocolic vein def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [Wikipedia:Ileocolic_vein] subset: human_reference_atlas subset: uberon_slim synonym: "vena ileocolica" RELATED OMO:0003011 [Wikipedia:Ileocolic_vein] xref: EMAPA:37150 {source="MA:th"} xref: FMA:15408 xref: MA:0002141 xref: NCIT:C53047 xref: SCTID:36208008 xref: UMLS:C0226744 {source="ncithesaurus:Ileocolic_Vein"} xref: Wikipedia:Ileocolic_vein is_a: UBERON:0001217 ! ileal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001220 name: quadratus lumborum def: "An abdominal muscle that inserts on the last rib and transverse processes of lumbar vertebrae. It is irregular and quadrilateral in shape, and broader below than above." [Wikipedia:Quadratus_lumborum_muscle] subset: organ_slim subset: uberon_slim synonym: "muscle of posterior abdominal wall" EXACT [] xref: EMAPA:18524 xref: FMA:15569 xref: MA:0002362 xref: NCIT:C33440 xref: UMLS:C0224380 {source="ncithesaurus:Quadratus_Lumborum"} xref: Wikipedia:Quadratus_lumborum_muscle is_a: UBERON:0002378 ! muscle of abdomen is_a: UBERON:0004518 ! muscle of vertebral column property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png" xsd:anyURI [Term] id: UBERON:0001221 name: transversus abdominis muscle def: "The lateral abdominal wall muscle that is deep to the internal oblique." [ISBN:9781435464339, UBERON:cjm] subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "musculus transversus abdominis" EXACT OMO:0003011 [FMA:15570, FMA:TA] synonym: "transversalis" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transversalis muscle" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transverse abdominal" EXACT [FMA:15570] synonym: "transverse abdominal" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transverse abdominal muscle" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transverse abdominis" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transverse abdominus" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transversis abdominus" EXACT OMO:0003011 [Wikipedia:Transversus_abdominis_muscle] synonym: "transversus" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transversus abdominis" EXACT OMO:0003011 [] synonym: "transversus abdominis" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transversus abdominus" RELATED [Wikipedia:Transversus_abdominis_muscle] synonym: "transversus abdominus muscle" RELATED [Wikipedia:Transversus_abdominis_muscle] xref: EHDAA2:0002078 xref: EHDAA:8254 xref: EMAPA:18165 xref: FMA:15570 xref: MA:0002396 xref: NCIT:C53179 xref: SCTID:244949003 xref: UMLS:C0224378 {source="ncithesaurus:Transversus_Abdominis"} xref: VHOG:0000845 xref: Wikipedia:Transversus_abdominis_muscle is_a: UBERON:0002461 {is_inferred="true"} ! anterior abdominal wall muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg" xsd:anyURI property_value: external_definition "One of a pair of transverse abdominal muscles that is the anterolateral muscle of the abdomen, lying immediately under the internal abdominal oblique. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000845", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/transversus+abdominis"} property_value: homology_notes "Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000845", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.193", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001222 name: right ureter def: "An ureter that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37373 {source="MA:th"} xref: FMA:15571 xref: MA:0001685 xref: NCIT:C49327 xref: SCTID:276251000 xref: UMLS:C0227682 {source="ncithesaurus:Right_Ureter"} is_a: UBERON:0000056 ! ureter property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.2/assets/3d-vh-f-ureter-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.2/assets/3d-vh-m-ureter-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001223 name: left ureter def: "An ureter that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37372 {source="MA:th"} xref: FMA:15572 xref: MA:0001684 xref: NCIT:C49324 xref: SCTID:276340002 xref: UMLS:C0227683 {source="ncithesaurus:Left_Ureter"} is_a: UBERON:0000056 ! ureter property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.2/assets/3d-vh-f-ureter-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.2/assets/3d-vh-m-ureter-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001224 name: renal pelvis def: "A funnel shaped proximal portion of the ureter that is formed by convergence of the major calices [MP]." [MP:0004194] comment: In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "kidney pelvis" EXACT [] synonym: "p. renallis" RELATED OMO:0003011 [Wikipedia:Renal_pelvis] synonym: "pelvis of ureter" EXACT [] synonym: "pyelum" RELATED [MP:0004194] xref: CALOHA:TS-2230 xref: EMAPA:17948 xref: FMA:15575 xref: GAID:426 xref: galen:RenalPelvis xref: MA:0000374 xref: MESH:D007682 xref: NCIT:C12887 xref: SCTID:362221007 xref: UMLS:C0227666 {source="ncithesaurus:Renal_Pelvis"} xref: Wikipedia:Renal_pelvis is_a: UBERON:0000064 ! organ part is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0002113 {source="MA"} ! kidney relationship: part_of UBERON:0036295 ! renal pelvis/ureter relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg" xsd:anyURI [Term] id: UBERON:0001225 name: cortex of kidney def: "Outer cortical portion of the kidney, between the renal capsule and the renal medulla." [Wikipedia:Renal_cortex] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cortex renalis" EXACT OMO:0003011 [FMA:15581, FMA:TA] synonym: "kidney cortex" EXACT [] synonym: "renal cortex" EXACT [] xref: BTO:0001166 xref: CALOHA:TS-0503 xref: EMAPA:17952 xref: FMA:15581 xref: GAID:424 xref: galen:CortexOfKidney xref: MA:0000372 xref: MESH:D007672 xref: NCIT:C12739 xref: SCTID:362211004 xref: UMLS:C0022655 {source="ncithesaurus:Renal_Cortex"} xref: Wikipedia:Renal_cortex is_a: UBERON:0001851 ! cortex relationship: part_of UBERON:0008987 {source="FMA"} ! renal parenchyma relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: structure_notes "In the adult metanephros, it forms a continuous smooth outer zone with a number of projections that extend down between the pyramids. It contains the renal corpuscles and the renal tubules except for parts of the loop of Henle which descend into the renal medulla. It also contains blood vessels and cortical collecting ducts. The renal cortex is the part of the kidney where ultrafiltration occurs.[WP]" xsd:string [Term] id: UBERON:0001226 name: major calyx def: "Portion of the urinary collecting system within the kidney that drains several minor calyces." [http://anatomy.uams.edu/anatomyhtml/kidney.html] comment: major calyx collects urine from several renal papillae; all major calyces unite to form the renal pelvis subset: human_reference_atlas subset: uberon_slim synonym: "calices renales majores" EXACT OMO:0003011 [Wikipedia:Major_calyx] synonym: "calices renales majores" RELATED OMO:0003011 [Wikipedia:Major_calyx] synonym: "major calix" EXACT [] xref: EMAPA:18677 xref: FMA:15613 xref: MA:0001644 xref: SCTID:1106008 xref: Wikipedia:Major_calyx is_a: UBERON:0006517 ! kidney calyx relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] id: UBERON:0001227 name: minor calyx def: "Portion of the urinary collecting system within the kidney that drains one renal papilla." [http://anatomy.uams.edu/anatomyhtml/kidney.html] comment: one renal papilla projects into the lumen of one minor calyx; several minor calyces unite to form a major calyx subset: human_reference_atlas subset: uberon_slim synonym: "calices renales minores" EXACT OMO:0003011 [Wikipedia:Minor_calyx] synonym: "calices renales minores" RELATED OMO:0003011 [Wikipedia:Minor_calyx] synonym: "minor calix" EXACT [] xref: EMAPA:18678 xref: FMA:15614 xref: MA:0001645 xref: SCTID:26293004 xref: Wikipedia:Minor_calyx is_a: UBERON:0006517 ! kidney calyx relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] id: UBERON:0001228 name: renal papilla def: "Tip of renal pyramid projecting into a minor calyx." [http://anatomy.uams.edu/anatomyhtml/kidney.html] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "kidney papilla" EXACT [MP:0011303] xref: BTO:0003925 xref: EMAPA:35727 xref: FMA:15622 xref: galen:RenalPapilla xref: MA:0002730 xref: MESH:D007679 xref: NCIT:C33460 xref: SCTID:362214007 xref: UMLS:C0022666 {source="ncithesaurus:Renal_Papilla"} xref: Wikipedia:Renal_papilla is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001294 ! inner medulla of kidney relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] id: UBERON:0001229 name: renal corpuscle def: "The structure containing the glomerular capsule and the glomerulus that serves as the initial blood-filtering component of a nephron." [ISBN:0-683-40008-8, MP:0002827] comment: Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "corpusculum renale" EXACT OMO:0003011 [] synonym: "corpusculum renis" RELATED OMO:0003011 [Wikipedia:Renal_corpuscle] synonym: "cortical renal corpuscle" RELATED [MA:0000376] synonym: "kidney corpuscle" RELATED [Wikipedia:Renal_corpuscle] synonym: "Malphigian corpuscle" EXACT MISSPELLING [MA:0000376] synonym: "Malpighian corpuscle" EXACT [ZFA:0005281] xref: BTO:0000333 xref: CALOHA:TS-1317 xref: EMAPA:28236 xref: EMAPA:35726 xref: EV:0100385 xref: FMA:15625 xref: MA:0000376 xref: NCIT:C33456 xref: SCTID:361329009 xref: TAO:0005281 xref: UMLS:C0227635 {source="ncithesaurus:Renal_Corpuscle"} xref: VHOG:0001262 xref: Wikipedia:Renal_corpuscle xref: ZFA:0005281 is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001285 {source="MA", source="ZFA"} ! nephron relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg" xsd:anyURI property_value: external_definition "A mass of arterial capillaries enveloped in a capsule and attached to a tubule in the kidney[BTO]" xsd:string {date_retrieved="2012-11-28", external_class="BTO:0000333", ontology="BTO", source="BTO:curator"} property_value: external_definition "A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated. Paired highly vascularized structures of the pronephros, responsible for blood filtration.[XAO]" xsd:string {date_retrieved="2012-11-28", external_class="XAO:0000146", ontology="XAO", source="XAO:curator"} property_value: external_definition "The part of the nephron that filters blood.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005281", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001230 name: glomerular capsule def: "A cup-like sac at the expanded beginning of a tubular component of a nephron that contains the glomerulus." [MGI:pvb, MP:0002828, Wikipedia:Bowman%27s_capsule] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "Bowman's capsule" RELATED [TAO:0005254] synonym: "Bowmans capsule" EXACT [KUPO:0001001] synonym: "capsula glomerularis" EXACT OMO:0003011 [] synonym: "capsula glomeruli" RELATED OMO:0003011 [] synonym: "Malphigian capsule" RELATED MISSPELLING [BTO:0002297] synonym: "Malpighian capsule" RELATED [UBERON:cjm] synonym: "Mueller capsule" RELATED [BTO:0002297] synonym: "Muellerian capsule" RELATED [BTO:0002297] synonym: "pronephric glomerular capsule" RELATED [TAO:0005310] synonym: "renal glomerular capsule" EXACT [TAO:0005254] xref: AAO:0010526 xref: BTO:0002297 xref: EMAPA:27973 xref: EMAPA:28257 xref: FMA:15626 xref: KUPO:0001001 xref: MA:0001660 xref: NCIT:C32225 xref: SCTID:361331000 xref: TAO:0005254 xref: TAO:0005310 xref: UMLS:C0524448 {source="ncithesaurus:Bowman_s_Capsule"} xref: Wikipedia:Bowman%27s_capsule xref: ZFA:0005254 xref: ZFA:0005310 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0004199 ! S-shaped body relationship: part_of UBERON:0001229 ! renal corpuscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg" xsd:anyURI property_value: development_notes "One fold of the S-shaped body gives rise to Bowman's capsule[GUDMAP]" xsd:string property_value: external_definition "Anatomical structure found in the kidney consisting of an expanded end of a kidney tubule surrounding a glomerulus and is the major site of filtration.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010526", ontology="AAO", source="AAO:BJB"} property_value: function_notes "Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration[WP]." xsd:string [Term] id: UBERON:0001231 name: nephron tubule alt_id: UBERON:0004210 def: "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "kidney tubule" EXACT [GAID:433] synonym: "renal tubule" BROAD [] synonym: "tubulus renalis" EXACT [] synonym: "uriniferous tubule" RELATED [MA:0000377] xref: BTO:0000343 xref: CALOHA:TS-1262 xref: EFO:0003666 xref: EMAPA:27782 xref: EV:0100387 xref: FMA:15627 xref: GAID:433 xref: MA:0000377 xref: MESH:D007684 xref: NCIT:C49274 xref: SCTID:361332007 xref: TAO:0001287 xref: UMLS:C0022674 {source="ncithesaurus:Renal_Tubule"} xref: Wikipedia:Renal_tubule xref: ZFA:0001287 is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0009773 {source="GO"} ! renal tubule relationship: develops_from UBERON:0003918 {notes="checkme"} ! kidney mesenchyme relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "note that in ISBN:0073040584 (Vertebrates, Kardong), the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001232 name: collecting duct of renal tubule def: "The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient." [GO:0072044, Wikipedia:Collecting_tubule] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arcuate renal tubule" RELATED [Wikipedia:Connecting_tubule] synonym: "collecting duct" EXACT [GO:0072044] synonym: "collecting duct system" RELATED [BTO:0000761] synonym: "collecting tubule" RELATED [] synonym: "junctional tube" RELATED [Wikipedia:Connecting_tubule] synonym: "kidney collecting duct" EXACT [] synonym: "kidney collecting tubule" RELATED [] synonym: "renal collecting tubule" EXACT [FMA:15628] synonym: "tubulus renalis arcuatus" EXACT OMO:0003011 [Wikipedia:Connecting_tubule] synonym: "tubulus renalis colligens" EXACT [] synonym: "ureteric tree" RELATED [EMAPA:28407] xref: BTO:0000761 xref: CALOHA:TS-0860 xref: EMAPA:28407 xref: EV:0100391 xref: FMA:15628 xref: GAID:434 xref: MA:0000371 xref: MESH:D007685 xref: SCTID:28202009 xref: TAO:0005294 xref: Wikipedia:Collecting_tubule xref: ZFA:0005294 is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001285 {notes="checkme", source="GO"} ! nephron relationship: part_of UBERON:0004100 ! renal collecting system relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Renal duct that collects the output from renal tubules.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005294", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "in ISBN:0073040584 (Vertebrates, Kardong), the nephron is adjacent to the collecting tubule, consistent with FMA, but not GO. Wikipedia says: Many sources include the connecting tubule as part of the collecting duct system. However, the embryological origin is more similar to the nephron than it is to the rest of the collecting duct (which derives from the ureteric bud), and other sources therefore classify the connecting tubule with the nephron" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001233 name: right adrenal gland def: "An adrenal gland that is in the right side of the abdomen." [OBOL:automatic] synonym: "glandula suprarenalis dexter" EXACT OMO:0003011 [] synonym: "right suprarenal gland" EXACT [] xref: EMAPA:37357 {source="MA:th"} xref: FMA:15629 xref: MA:0000719 xref: NCIT:C49325 xref: SCTID:281625001 xref: UMLS:C0229559 {source="ncithesaurus:Right_Adrenal_Gland"} is_a: UBERON:0002369 ! adrenal gland property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "In humans, the right adrenal gland is triangular shaped" xsd:string {source="WP"} [Term] id: UBERON:0001234 name: left adrenal gland def: "An adrenal gland that is in the left side of the abdomen." [OBOL:automatic] synonym: "glandula suprarenalis sinister" EXACT OMO:0003011 [] synonym: "left suprarenal gland" EXACT [] xref: EMAPA:37356 {source="MA:th"} xref: FMA:15630 xref: MA:0000718 xref: NCIT:C49322 xref: SCTID:281626000 xref: UMLS:C0229560 {source="ncithesaurus:Left_Adrenal_Gland"} is_a: UBERON:0002369 ! adrenal gland property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "In humans, the left adrenal gland is semilunar shaped" xsd:string {source="WP"} [Term] id: UBERON:0001235 name: adrenal cortex def: "The thick outer layer of the adrenal gland that produces and secretes steroid hormones such as corticosterone, estrone and aldosterone." [ISBN:0-683-40008-8, MGI:llw2, MP:0008288] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "adrenal gland cortex" EXACT [] synonym: "cortex (glandula suprarenalis)" EXACT [] synonym: "cortex glandulae suprarenalis" RELATED OMO:0003011 [BTO:0000045, Wikipedia:Adrenal_cortex] synonym: "cortex of adrenal gland" EXACT [] synonym: "cortex of suprarenal gland" EXACT [] synonym: "suprarenal" RELATED [] synonym: "suprarenal cortex" EXACT [] xref: AAO:0011009 xref: BTO:0000045 xref: CALOHA:TS-0015 xref: EFO:0000237 xref: EMAPA:18427 xref: EV:0100136 xref: FMA:15632 xref: GAID:447 xref: MA:0000118 xref: MAT:0000494 xref: MESH:D000302 xref: NCIT:C12396 xref: SCTID:362584002 xref: UMLS:C0001613 {source="ncithesaurus:Adrenal_Cortex"} xref: VHOG:0001481 xref: Wikipedia:Adrenal_cortex xref: XAO:0000165 is_a: UBERON:0001851 ! cortex is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002369 ! adrenal gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png" xsd:anyURI property_value: homology_notes "All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues (medulla), but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001481", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.518 and Figure 15-9", source="http://bgee.unil.ch/"} property_value: taxon_notes "Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO" xsd:string [Term] id: UBERON:0001236 name: adrenal medulla def: "The inner portion of the adrenal gland that consists mainly of chromaffin cells which produce, store and secrete neurotransmitters such as epinephrine and norepinephrine." [MESH:A06.407.071.265, MGI:llw2, MP:0008289] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "adrenal central medulla" RELATED [] synonym: "adrenal gland medulla" EXACT [] synonym: "chromaffin cells" RELATED [] synonym: "medulla (glandula suprarenalis)" EXACT [] synonym: "medulla glandulae suprarenalis" EXACT OMO:0003011 [FMA:15633, FMA:TA] synonym: "medulla of adrenal gland" EXACT [OBOL:automatic] synonym: "medulla of glandula suprarenalis" RELATED [BTO:0000049] synonym: "medulla of suprarenal gland" EXACT [] synonym: "suprarenal medulla" EXACT [] xref: AAO:0011010 xref: BTO:0000049 xref: CALOHA:TS-0018 xref: EFO:0000852 xref: EMAPA:18428 xref: EV:0100137 xref: FMA:15633 xref: GAID:451 xref: MA:0000119 xref: MAT:0000495 xref: MESH:D019439 xref: NCIT:C12397 xref: SCTID:362585001 xref: UMLS:C0001629 {source="ncithesaurus:Adrenal_Medulla"} xref: VHOG:0001378 xref: Wikipedia:Adrenal_medulla xref: XAO:0000166 is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002369 ! adrenal gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png" xsd:anyURI property_value: homology_notes "All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues (medulla), but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001378", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.518 and Figure 15-9", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001237 name: paraaortic body def: "A chromaffin paraganglion located at the bifurcation of the aorta or at the origin of the inferior mesenteric artery." [Wikipedia:Organ_of_Zuckerkandl] comment: The largest chromaffin paraganglia, and the largest source of circulating catecholamines in the fetus and young infants, and gradually atrophies to microscopic loci[WP] subset: organ_slim subset: uberon_slim synonym: "organ of Zuckerkandl" EXACT [] synonym: "para-aortic body" RELATED [] synonym: "paraganglia of Zuckerkandl" RELATED OMO:0003004 [] synonym: "paraganglion of Zuckerkandl" EXACT [EMAPA:18223] xref: EMAPA:18223 xref: FMA:15647 xref: GAID:444 xref: MA:0001137 xref: MESH:D010220 xref: NCIT:C25316 xref: SCTID:276159005 xref: UMLS:C0442134 {source="ncithesaurus:Paraaortic"} xref: Wikipedia:Organ_of_Zuckerkandl is_a: UBERON:0012279 ! chromaffin paraganglion property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png" xsd:anyURI [Term] id: UBERON:0001238 name: lamina propria of small intestine def: "Lamina propria that is part_of the small intestine." [GOC:Obol] synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of small intestine" EXACT [] synonym: "lamina propria of mucosa of small intestine" EXACT [] synonym: "lamina propria of small bowel" EXACT [OBOL:automatic] synonym: "small bowel lamina propria" EXACT [OBOL:automatic] synonym: "small bowel lamina propria mucosa" EXACT [OBOL:automatic] synonym: "small bowel lamina propria mucosae" EXACT [OBOL:automatic] synonym: "small intestine lamina propria" EXACT [] synonym: "small intestine lamina propria mucosa" EXACT [OBOL:automatic] synonym: "small intestine lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:35779 xref: FMA:15651 xref: MA:0001554 xref: NCIT:C49297 xref: SCTID:63588008 xref: UMLS:C1711325 {source="ncithesaurus:Small_Intestinal_Lamina_Propria"} is_a: UBERON:0004780 ! gastrointestinal system lamina propria relationship: part_of UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0001239 name: muscularis mucosae of large intestine def: "A muscularis mucosa that is part of a large intestine." [OBOL:automatic] synonym: "lamina muscularis mucosae intestini crassi" EXACT OMO:0003011 [FMA:15655, FMA:TA] synonym: "lamina muscularis of large intestine mucosa" EXACT [] synonym: "lamina muscularis of large intestine mucous membrane" EXACT [] synonym: "large intestine muscularis mucosa" EXACT [] xref: EMAPA:37556 {source="MA:th"} xref: FMA:15655 xref: MA:0002689 xref: NCIT:C32928 xref: UMLS:C0734776 {source="ncithesaurus:Large_Intestinal_Muscularis_Mucosa"} is_a: UBERON:0001240 ! muscularis mucosae of intestine is_a: UBERON:0004220 ! large intestine smooth muscle relationship: part_of UBERON:0001207 ! mucosa of large intestine relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine [Term] id: UBERON:0001240 name: muscularis mucosae of intestine def: "A muscularis mucosa that is part of a intestine." [OBOL:automatic] synonym: "intestinal muscularis mucosa" RELATED [EMAPA:35442] synonym: "intestine muscularis mucosa" EXACT [MA:0002694] xref: EMAPA:35442 xref: FMA:15691 xref: MA:0002694 is_a: UBERON:0004221 ! intestine smooth muscle is_a: UBERON:0006676 ! muscularis mucosa relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001241 name: crypt of Lieberkuhn of small intestine def: "The tubular intestinal glands found in the mucosal membranes of the small intestine." [ISBN:0-683-40008-8, MP:0004841] subset: pheno_slim synonym: "crypt of Lieberkuhn of small bowel" EXACT [OBOL:automatic] synonym: "crypt of Lieberkuhn of small intestine" EXACT [OBOL:automatic] synonym: "intestinal gland of small bowel" EXACT [OBOL:automatic] synonym: "intestinal gland of small intestine" EXACT [OBOL:automatic] synonym: "Lieberkühn crypt of small bowel" EXACT [OBOL:automatic] synonym: "Lieberkühn crypt of small intestine" EXACT [OBOL:automatic] synonym: "small bowel crypt of Lieberkuhn" EXACT [OBOL:automatic] synonym: "small bowel intestinal gland" EXACT [OBOL:automatic] synonym: "small bowel Lieberkühn crypt" EXACT [OBOL:automatic] synonym: "small intestinal crypt of Lieberkuhn" EXACT [] synonym: "small intestine crypt of Lieberkuhn" EXACT [OBOL:automatic] synonym: "small intestine intestinal gland" EXACT [OBOL:automatic] synonym: "small intestine Lieberkühn crypt" EXACT [OBOL:automatic] xref: EMAPA:35777 xref: FMA:15693 xref: MA:0001552 xref: NCIT:C33565 xref: SCTID:52688008 xref: UMLS:C0227267 {source="ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn"} is_a: UBERON:0001983 ! crypt of Lieberkuhn relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001242 name: intestinal mucosa def: "Mucosal layer that lines the intestine." [UBERON:cjm] subset: pheno_slim subset: uberon_slim synonym: "bowel mucosa" EXACT [OBOL:automatic] synonym: "bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "bowel mucous membrane" EXACT [OBOL:automatic] synonym: "bowel organ mucosa" EXACT [OBOL:automatic] synonym: "intestine mucosa" EXACT [] synonym: "intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "intestine mucous membrane" EXACT [OBOL:automatic] synonym: "intestine organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bowel" EXACT [OBOL:automatic] synonym: "mucosa of intestine" EXACT [] synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic] synonym: "mucous membrane of bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of intestine" EXACT [OBOL:automatic] synonym: "organ mucosa of bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of intestine" EXACT [OBOL:automatic] synonym: "tunica mucosa intestini" EXACT [] xref: BTO:0000642 xref: EMAPA:35440 xref: FMA:15695 xref: GAID:296 xref: MA:0001537 xref: MESH:D007413 xref: NCIT:C49241 xref: SCTID:362080002 xref: UMLS:C0021839 {source="ncithesaurus:Intestinal_Mucosa"} is_a: UBERON:0004786 ! gastrointestinal system mucosa relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001243 name: serosa of intestine def: "A serous membrane that is part of a wall of intestine [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine serous membrane" EXACT [OBOL:automatic] synonym: "bowel anatomical wall serosa" EXACT [OBOL:automatic] synonym: "bowel anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "bowel wall serosa" EXACT [OBOL:automatic] synonym: "bowel wall serous membrane" EXACT [OBOL:automatic] synonym: "intestinal serosa" EXACT [] synonym: "intestinal wall serosa" EXACT [OBOL:automatic] synonym: "intestinal wall serous membrane" EXACT [OBOL:automatic] synonym: "intestine anatomical wall serosa" EXACT [OBOL:automatic] synonym: "intestine anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "intestine serosa" EXACT [] synonym: "intestine wall serosa" EXACT [OBOL:automatic] synonym: "intestine wall serous membrane" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "serosa of bowel anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of bowel wall" EXACT [OBOL:automatic] synonym: "serosa of intestinal wall" EXACT [OBOL:automatic] synonym: "serosa of intestine anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of intestine wall" EXACT [OBOL:automatic] synonym: "serosa of wall of bowel" EXACT [OBOL:automatic] synonym: "serosa of wall of intestine" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "serous membrane of bowel anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of bowel wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestinal wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestine anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestine wall" EXACT [OBOL:automatic] synonym: "serous membrane of wall of bowel" EXACT [OBOL:automatic] synonym: "serous membrane of wall of intestine" EXACT [OBOL:automatic] synonym: "visceral peritoneum of intestine" EXACT [] synonym: "wall of bowel serosa" EXACT [OBOL:automatic] synonym: "wall of bowel serous membrane" EXACT [OBOL:automatic] synonym: "wall of intestine serosa" EXACT [OBOL:automatic] synonym: "wall of intestine serous membrane" EXACT [OBOL:automatic] xref: EMAPA:37619 {source="MA:th"} xref: FMA:15701 xref: MA:0001538 is_a: UBERON:0004782 ! gastrointestinal system serosa relationship: part_of UBERON:0001262 ! wall of intestine property_value: editor_note "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001244 name: internal anal sphincter def: "The smooth muscle ring, formed by an increase of the circular muscle fibers of the rectum, situated at the upper end of the anal canal, internal to the outer voluntary external anal sphincter." [MGI:anna, MP:0009055] subset: pheno_slim subset: uberon_slim synonym: "circular layer of anal muscularis externa" EXACT [] synonym: "circular layer of muscularis externa of anal canal" EXACT [] synonym: "circular layer of muscularis propria of anal canal" EXACT [] synonym: "circular muscle layer of anal canal" EXACT [] xref: EMAPA:18266 xref: FMA:15710 xref: MA:0001534 xref: NCIT:C32833 xref: UMLS:C0224394 {source="ncithesaurus:Internal_Anal_Sphincter"} xref: Wikipedia:Internal_anal_sphincter is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle is_a: UBERON:0004916 ! anal sphincter is_a: UBERON:0007521 ! smooth muscle sphincter is_a: UBERON:0012368 ! circular muscle layer of muscular coat property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray1079.png" xsd:anyURI [Term] id: UBERON:0001245 name: anus def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "anal opening" EXACT [] synonym: "anal orifice" EXACT [] synonym: "opening of terminal part of digestive tract" EXACT [] synonym: "proctodeum" RELATED [] xref: BTO:0001680 xref: CALOHA:TS-2005 xref: EV:0100082 xref: FBbt:00047153 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:15711 xref: GAID:312 xref: galen:Anus xref: MA:0000331 xref: NCIT:C43362 xref: SCTID:181262009 xref: TADS:0000066 xref: TGMA:0001279 xref: UMLS:C0003461 {source="ncithesaurus:Anus"} xref: WBbt:0005364 xref: Wikipedia:Anus is_a: UBERON:0000161 ! orifice is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0000931 ! proctodeum relationship: part_of UBERON:0001555 ! digestive tract relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Protovsdeuterostomes.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif" xsd:anyURI property_value: has_relational_adjective "anal" xsd:string property_value: taxon_notes "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html" xsd:string [Term] id: UBERON:0001246 name: interlobular bile duct def: "The canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500] subset: pheno_slim synonym: "interlobular ductule" EXACT [MP:0009500] xref: FMA:15767 xref: MA:0002668 xref: NCIT:C32827 xref: SCTID:83488001 xref: UMLS:C0227515 {source="ncithesaurus:Interlobular_Bile_Duct"} xref: Wikipedia:Interlobular_bile_ducts is_a: UBERON:0003704 {source="FMA", source="MA-part-of"} ! intrahepatic bile duct relationship: part_of UBERON:0001279 {source="FMA", source="MA", source="MP"} ! portal triad [Term] id: UBERON:0001247 name: falciform ligament def: "A ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [Wikipedia:Falciform_ligament] subset: uberon_slim synonym: "falciform ligament of liver" EXACT [] synonym: "ligamentum falciforme (hepatis)" EXACT [] synonym: "ligamentum falciforme hepatis" EXACT OMO:0003011 [FMA:15823, FMA:TA] xref: EHDAA2:0000499 xref: EHDAA:4856 xref: EMAPA:18288 xref: FMA:15823 xref: MA:0001622 xref: NCIT:C32582 xref: SCTID:362705001 xref: UMLS:C0230240 {source="ncithesaurus:Falciform_Ligament"} xref: VHOG:0000355 xref: Wikipedia:Falciform_ligament is_a: UBERON:0013139 ! ligament of liver relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_ontology_notes "in FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001248 name: hilum of spleen def: "The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [Wikipedia:Splenic_hilum] subset: human_reference_atlas subset: uberon_slim synonym: "hilum" BROAD [EMAPA:19303] synonym: "hilum lienale" EXACT OMO:0003011 [FMA:15841, FMA:TA] synonym: "hilum splenicum" EXACT OMO:0003011 [FMA:15841, FMA:TA] synonym: "hilum splenicum" RELATED OMO:0003011 [Wikipedia:Splenic_hilum] synonym: "spleen hilum" EXACT [] synonym: "splenic hilum" EXACT [] xref: EMAPA:19303 xref: FMA:15841 xref: MA:0002670 xref: NCIT:C33601 xref: SCTID:245377005 xref: UMLS:C0229685 {source="ncithesaurus:Splenic_Hilum"} xref: Wikipedia:Splenic_hilum is_a: UBERON:0004885 ! hilum relationship: part_of UBERON:0002106 ! spleen relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.3/assets/3d-vh-f-spleen.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.3/assets/3d-vh-m-spleen.glb" xsd:anyURI [Term] id: UBERON:0001249 name: spleen lymphoid follicle alt_id: UBERON:0003969 def: "The area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur." [CL:tm, https://github.com/obophenotype/uberon/issues/6, MP:0008470] subset: pheno_slim synonym: "lymphatic follicle of spleen" EXACT [FMA:15843] synonym: "lymphoid follicle of spleen" EXACT [FMA:15843] synonym: "lymphoid nodule of spleen" EXACT [FMA:15843] synonym: "Malpighian body" EXACT [FMA:15843] synonym: "spleen B cell follicle" EXACT [CL:tm] synonym: "spleen lymphoid follicle" EXACT [MA:0002672] synonym: "spleen lymphoid nodule" RELATED [MA:0002672] synonym: "splenic B cell follicle" EXACT [CL:tm] synonym: "splenic lymphatic follicle" EXACT [FMA:15843] synonym: "splenic lymphoid follicle" EXACT [] xref: EMAPA:35804 xref: MA:0002672 xref: NCIT:C33602 xref: SCTID:35845000 xref: UMLS:C1519475 {source="ncithesaurus:Splenic_Lymphoid_Follicle"} is_a: UBERON:0000444 ! lymphoid follicle relationship: part_of UBERON:0001959 {source="CL:tm", source="MA"} ! white pulp of spleen relationship: part_of UBERON:0006561 {source="FMA"} ! non-lymphatic part of lymphoid system [Term] id: UBERON:0001250 name: red pulp of spleen def: "The parenchymatous tissue network of the spleen that consists of loose plates or cords (sinuses) infiltrated with red blood cells where most of the blood filtration occurs and degenerate erythrocytes are removed from the circulation." [MGI:csmith, MP:0002356] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "pulpa rubra" EXACT OMO:0003011 [FMA:15844, FMA:TA] synonym: "pulpa splenica" RELATED OMO:0003011 [Wikipedia:Red_pulp] synonym: "red pulp" EXACT [] synonym: "spleen red pulp" EXACT [] synonym: "splenic red pulp" EXACT [] xref: CALOHA:TS-1263 xref: EMAPA:35806 xref: FMA:15844 xref: MA:0000756 xref: NCIT:C12992 xref: SCTID:27579002 xref: UMLS:C0229687 {source="ncithesaurus:Splenic_Red_Pulp"} xref: Wikipedia:Red_pulp is_a: UBERON:1000023 ! spleen pulp relationship: present_in_taxon NCBITaxon:7955 {source="DOI:10.1177/0192623311409597"} relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png" xsd:anyURI [Term] id: UBERON:0001251 name: marginal zone of spleen def: "The zone between the red and white pulp of the spleen containing numerous macrophages and lymphocytes, and a rich plexus of sinusoids supplied by white pulp arterioles carrying blood-borne antigens." [ISBN:0-683-40008-8, MP:0002362] subset: human_reference_atlas subset: pheno_slim synonym: "junctional zone of spleen" EXACT [] synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone] synonym: "spleen marginal zone" EXACT [MA:0000755] xref: CALOHA:TS-2395 xref: EMAPA:36650 xref: FMA:15852 xref: MA:0000755 xref: NCIT:C49767 xref: UMLS:C1711368 {source="ncithesaurus:Marginal_Zone"} xref: Wikipedia:Marginal_zone is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002106 ! spleen relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png" xsd:anyURI property_value: external_ontology_notes "WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001252 name: adventitia of ureter def: "An adventitia that is part of a ureter." [OBOL:automatic] synonym: "external adventitia of ureter" EXACT [] synonym: "tunica adventitia (ureter)" EXACT OMO:0003011 [FMA:15892, FMA:TA] synonym: "tunica adventitia ureteris" EXACT OMO:0003011 [FMA:15892, FMA:TA] synonym: "ureter adventitia" EXACT [] synonym: "ureteral adventitia" EXACT [] xref: EMAPA:28114 xref: FMA:15892 xref: MA:0002652 xref: SCTID:392273001 xref: SCTID:47879001 is_a: UBERON:0005742 ! adventitia relationship: part_of UBERON:0009916 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! wall of ureter [Term] id: UBERON:0001253 name: lamina propria of ureter def: "A lamina propria that is part of a ureter [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "lamina propria mucosa of ureter" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of ureter" EXACT [OBOL:automatic] synonym: "ureter lamina propria" EXACT [] synonym: "ureter lamina propria mucosa" EXACT [OBOL:automatic] synonym: "ureter lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:28841 xref: FMA:15896 xref: MA:0002653 xref: SCTID:2771005 is_a: UBERON:0000030 ! lamina propria relationship: part_of UBERON:0004980 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of ureter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001254 name: urothelium of ureter def: "The luminal epithelium of the tube that conducts the urine from the renal pelvis to the bladder[MP]." [MP:0000535] subset: human_reference_atlas subset: pheno_slim synonym: "transitional epithelium of ureter" EXACT [] synonym: "ureter luminal urothelium" RELATED INCONSISTENT [MP:0000535] synonym: "ureter transitional epithelium" EXACT [] synonym: "ureter urothelium" EXACT [] xref: EMAPA:28089 xref: FMA:15897 xref: MA:0002655 is_a: UBERON:0000365 ! urothelium relationship: part_of UBERON:0000056 ! ureter relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "MP treats ureter urothelium and ureter luminal urothelium as exact synonyms, yes MA treats these as distinct; see also: transitional epithelium vs urothelium" xsd:string {external_ontology="MP"} [Term] id: UBERON:0001255 name: urinary bladder def: "Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]." [MGI:anna, Wikipedia:Urinary_bladder] subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "bladder" BROAD [EHDAA2:0000174] synonym: "urocyst" RELATED [Wikipedia:Urinary_bladder] synonym: "vesica" RELATED [BTO:0001418] synonym: "vesica urinaria" EXACT OMO:0003011 [Wikipedia:Urinary_bladder] xref: AAO:0000623 xref: BTO:0001418 xref: CALOHA:TS-1090 xref: EFO:0000290 xref: EHDAA2:0000174 xref: EHDAA:9328 xref: EMAPA:18321 xref: EV:0100098 xref: FMA:15900 xref: GAID:0000004 xref: galen:UrinaryBladder xref: MA:0000380 xref: MAT:0000122 xref: MESH:D001743 xref: MIAA:0000122 xref: NCIT:C12414 xref: SCTID:302512001 xref: UMLS:C0005682 {source="ncithesaurus:Bladder"} xref: VHOG:0000740 xref: Wikipedia:Urinary_bladder xref: XAO:0000154 is_a: UBERON:0002075 ! viscus is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018707 {source="BTO"} ! bladder organ relationship: develops_from UBERON:0000164 {notes="upper part of UG sinus"} ! primitive urogenital sinus relationship: never_in_taxon NCBITaxon:8782 {editor="https://orcid.org/0000-0003-3308-6245", id="GOTAX:0010073", source="https://github.com/obophenotype/uberon/issues/454"} relationship: part_of UBERON:0001556 {source="FMA"} ! lower urinary tract relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.2/assets/3d-vh-f-urinary-bladder.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.2/assets/3d-vh-m-urinary-bladder.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg" xsd:anyURI property_value: external_definition "A saccular organ in which urine accumulates before discharge from the body. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-29, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000740", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000623", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "vesical" xsd:string property_value: homology_notes "In tetrapods, the urinary bladder arises as an outpocketing of the cloaca. (...) The tetrapod urinary bladder appears first among amphibians and is present in Sphenodon, turtles, most lizards, ostriches among birds, and all mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000740", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.577-78", source="http://bgee.unil.ch/"} property_value: taxon_notes "The urinary bladder evolved in tetrapods. Birds to not possess a true urinary bladder, although Palaeognathae have an undifferentiated cloacal outpocketing that serves a similar function[https://github.com/obophenotype/uberon/issues/454]" xsd:string [Term] id: UBERON:0001256 name: wall of urinary bladder def: "An anatomical wall that lines the insider of a urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim synonym: "anatomical wall of bladder" EXACT [OBOL:automatic] synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic] synonym: "bladder anatomical wall" EXACT [OBOL:automatic] synonym: "bladder wall" EXACT [OBOL:automatic] synonym: "urinary bladder anatomical wall" EXACT [OBOL:automatic] synonym: "urinary bladder wall" EXACT [] synonym: "wall of bladder" EXACT [OBOL:automatic] xref: BTO:0001462 xref: EMAPA:35175 xref: FMA:15902 xref: MA:0002493 xref: NCIT:C48941 xref: SCTID:362225003 xref: UMLS:C0458421 {source="ncithesaurus:Bladder_Wall"} is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0001255 ! urinary bladder relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001257 name: trigone of urinary bladder def: "The smooth triangular region of the wall of the urinary bladder formed by the two ureteral orifices and the internal urethral orifice; it is an area in which the muscle fibers are closely adherent to the mucosa." [MGI:anna, MP:0011768] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "bladder trigone" EXACT [] synonym: "deep trigone" EXACT [] synonym: "dorsal bladder neck" RELATED [EMAPA:35174] synonym: "Lieutaud's trigone" EXACT [] synonym: "musculus trigoni vesicae profundus" EXACT OMO:0003011 [FMA:15910, FMA:TA] synonym: "trigone of bladder" EXACT [] synonym: "trigonum vesicae" EXACT OMO:0003011 [FMA:15910, FMA:TA] synonym: "trigonum vesicae urinariae" RELATED OMO:0003011 [Wikipedia:Trigone_of_urinary_bladder] synonym: "urinary bladder trigone" EXACT [] synonym: "vesical trigone" EXACT [] xref: EMAPA:35174 xref: FMA:15910 xref: galen:TrigoneOfUrinaryBladder xref: MA:0002492 xref: NCIT:C12331 xref: SCTID:272663002 xref: UMLS:C0447586 {source="ncithesaurus:Bladder_Trigone"} xref: Wikipedia:Trigone_of_urinary_bladder is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006082 ! fundus of urinary bladder relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.2/assets/3d-vh-f-urinary-bladder.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.2/assets/3d-vh-m-urinary-bladder.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg" xsd:anyURI property_value: development_notes "Embryologically, the trigone of the bladder is derived from the caudal end of mesonephric ducts, which is of mesodermal origin (the rest of the bladder is endodermal). In the female the mesonephric ducts regresses, causing the trigone to be less prominent, but still present" xsd:string {source="WP"} property_value: function_notes "The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill." xsd:string [Term] id: UBERON:0001258 name: neck of urinary bladder def: "The constricted portion of the urinary bladder, formed by the meeting of its inferolateral surfaces proximal to the opening of the urethra[MP]." [MP:anna, Wikipedia:Neck_of_urinary_bladder] subset: pheno_slim subset: uberon_slim synonym: "bladder neck" EXACT [] synonym: "cervix vesicae" EXACT OMO:0003011 [FMA:15912, FMA:TA] synonym: "cervix vesicae urinariae" RELATED OMO:0003011 [Wikipedia:Neck_of_urinary_bladder] synonym: "collum vesicae" EXACT OMO:0003011 [FMA:15912, FMA:TA] synonym: "neck of bladder" EXACT [] synonym: "urinary bladder neck" EXACT [] synonym: "vesical neck" EXACT [] xref: EMAPA:36078 xref: FMA:15912 xref: galen:UrinaryBladderNeck xref: MA:0002491 xref: NCIT:C12336 xref: SCTID:362227006 xref: UMLS:C0227716 {source="ncithesaurus:Bladder_Neck"} xref: Wikipedia:Neck_of_urinary_bladder is_a: UBERON:0001560 ! neck of organ relationship: part_of UBERON:0001255 ! urinary bladder property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png" xsd:anyURI [Term] id: UBERON:0001259 name: mucosa of urinary bladder def: "The mucous membrane lining the urinary bladder." [MGI:anna, MP:0011766] subset: efo_slim subset: human_reference_atlas subset: pheno_slim synonym: "bladder mucosa" EXACT [] synonym: "bladder mucous membrane" EXACT [OBOL:automatic] synonym: "bladder organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of bladder" EXACT [] synonym: "mucous membrane of urinary bladder" EXACT [] synonym: "tunica mucosa (vesica urinaria)" EXACT OMO:0003011 [FMA:15928, FMA:TA] synonym: "tunica mucosa vesicae" EXACT OMO:0003011 [FMA:15928, FMA:TA] synonym: "tunica mucosa vesicae urinariae" EXACT [MP:MP] synonym: "urinary bladder mucosa" EXACT [] synonym: "urinary bladder mucous membrane" EXACT [OBOL:automatic] xref: EFO:0000293 xref: EMAPA:35897 xref: FMA:15928 xref: galen:MucousMembraneOfUrinaryBladder xref: MA:0001692 xref: NCIT:C32205 xref: SCTID:362224004 xref: UMLS:C0227691 {source="ncithesaurus:Bladder_Mucosa"} is_a: UBERON:0000344 ! mucosa relationship: part_of UBERON:0001256 ! wall of urinary bladder relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001260 name: serosa of urinary bladder def: "A serous membrane that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] synonym: "bladder serosa" EXACT [] synonym: "bladder serous membrane" EXACT [OBOL:automatic] synonym: "serosa of bladder" EXACT [] synonym: "serous coat of bladder" EXACT [] synonym: "serous coat of urinary bladder" EXACT [] synonym: "serous membrane of bladder" EXACT [OBOL:automatic] synonym: "serous membrane of urinary bladder" EXACT [OBOL:automatic] synonym: "tunica serosa (vesica urinaria)" EXACT OMO:0003011 [FMA:15932, FMA:TA] synonym: "tunica serosa vesicae" EXACT OMO:0003011 [FMA:15932, FMA:TA] synonym: "urinary bladder serosa" EXACT [] synonym: "urinary bladder serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of urinary bladder" EXACT [] xref: EMAPA:28661 xref: FMA:15932 xref: MA:0001696 xref: SCTID:5868002 is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0001256 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! wall of urinary bladder property_value: editor_note "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001261 name: lamina propria of urinary bladder def: "A lamina propria that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "bladder lamina propria" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of urinary bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of urinary bladder" EXACT [OBOL:automatic] synonym: "lamina propria of bladder" EXACT [OBOL:automatic] synonym: "urinary bladder lamina propria" EXACT [] synonym: "urinary bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "urinary bladder lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:30088 xref: FMA:15935 xref: MA:0001695 xref: NCIT:C48940 xref: UMLS:C1706967 {source="ncithesaurus:Bladder_Lamina_Propria"} is_a: UBERON:0000030 ! lamina propria relationship: part_of UBERON:0001259 ! mucosa of urinary bladder relationship: present_in_taxon NCBITaxon:9606 property_value: structure_notes "Contains loose to dense connective tissue, variably sized blood vessels that may be close to epithelium, lymphatics, variable adipose tissue" xsd:string [Term] id: UBERON:0001262 name: wall of intestine def: "An anatomical wall that is part of a intestine [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "bowel anatomical wall" EXACT [OBOL:automatic] synonym: "bowel wall" EXACT [OBOL:automatic] synonym: "bowel wall" RELATED [MA:0001525] synonym: "intestinal wall" EXACT [] synonym: "intestine anatomical wall" EXACT [OBOL:automatic] synonym: "intestine wall" EXACT [] synonym: "wall of bowel" EXACT [OBOL:automatic] xref: BTO:0000647 xref: EMAPA:35444 xref: FMA:15949 xref: MA:0001525 xref: MA:0002693 xref: NCIT:C49478 xref: UMLS:C1708548 {source="ncithesaurus:Intestinal_Wall_Tissue"} is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0000160 ! intestine property_value: editor_note "we place two MA classes here due to the official ncit2ma mapping to intestinal wall tissue; not clear how bowel and intestine are different" xsd:string [Term] id: UBERON:0001263 name: pancreatic acinus def: "The secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct." [MP:0009145] subset: human_reference_atlas subset: pheno_slim synonym: "acinus pancreaticus" EXACT OMO:0003011 [FMA:16011] synonym: "pancreas acinus" EXACT [] synonym: "pancreatic acinar" RELATED [] synonym: "pancreatic acini" RELATED OMO:0003004 [] xref: BTO:0000028 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35651 xref: FMA:16011 xref: MA:0002417 xref: NCIT:C49268 xref: SCTID:247604006 xref: UMLS:C0227578 {source="ncithesaurus:Pancreatic_Acinus"} is_a: UBERON:0013232 ! serous acinus relationship: part_of UBERON:0007324 {source="FMA"} ! pancreatic lobule relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001264 name: pancreas def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]." [GO:0031016] subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core xref: AAO:0010112 xref: BTO:0000988 xref: CALOHA:TS-0736 xref: EFO:0000855 xref: EHDAA2:0001367 xref: EHDAA:6893 xref: EMAPA:17503 xref: EV:0100092 xref: FMA:7198 xref: GAID:334 xref: galen:Pancreas xref: MA:0000120 xref: MAT:0000075 xref: MESH:D010179 xref: MIAA:0000075 xref: NCIT:C12393 xref: SCTID:181277001 xref: TAO:0000140 xref: UMLS:C0030274 {source="ncithesaurus:Pancreas"} xref: VHOG:0000050 xref: Wikipedia:Pancreas xref: XAO:0000136 xref: ZFA:0000140 is_a: UBERON:0002075 ! viscus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png" xsd:anyURI property_value: external_definition "Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010112", ontology="AAO", source="AAO:BJB"} property_value: function_notes "The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1-2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans" xsd:string {source="PMID:16417468"} property_value: has_relational_adjective "pancreatic" xsd:string property_value: homology_notes "In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000050", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. C.R. Biologies (2007)", source="http://bgee.unil.ch/"} property_value: taxon_notes "As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] Hagfishes and lampreys are unique in the complete separation of their endocrine pancreas (islet or- gan) and their exocrine pancreas (50). The endocrine and exocrine pancreas are coassociated in crown gnathostomes (50). In Branchiostoma and Ciona, there is no diverticulum as there is in hagfishes, lampreys, and gnathostomes, only dispersed insulin-secreting cells in the walls of the gastrointestinal tract (51, 52)" xsd:string {source="PMID:20959416"} property_value: taxon_notes "The zebrafish does not have a discrete pancreas. Exocrine pancreatic tissue can be found scattered along the intestinal tract. The acinar structure of the exocrine pancreas is very similar to that of mammals and comprises cells with a very dark, basophilic cytoplasm" xsd:string [Term] id: UBERON:0001265 name: trabecula of spleen def: "A trabecula that is part of a spleen." [OBOL:automatic] subset: human_reference_atlas synonym: "spleen trabeculum" EXACT [] synonym: "splenic trabecula" EXACT [] synonym: "trabeculae of spleen" EXACT OMO:0003004 [] xref: EMAPA:35808 xref: FMA:16027 xref: MA:0000758 xref: NCIT:C33607 xref: SCTID:61987002 xref: UMLS:C0229688 {source="ncithesaurus:Splenic_Trabecula"} xref: Wikipedia:Trabeculae_of_spleen is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001266 name: splenic cord def: "A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis." [Wikipedia:Cords_of_Billroth] subset: human_reference_atlas synonym: "cord of Billroth" EXACT [Wikipedia:Cords_of_Billroth] synonym: "cord of Bilroth" EXACT [FMA:16031] xref: EMAPA:37752 {source="MA:th"} xref: FMA:16031 xref: MA:0002671 xref: NCIT:C33599 xref: UMLS:C0735011 {source="ncithesaurus:Splenic_Cord"} xref: Wikipedia:Cords_of_Billroth is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001267 name: femoral nerve def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "anterior crural nerve" EXACT [] synonym: "nervus femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_nerve] xref: EHDAA2:0000507 xref: EHDAA:5655 xref: EMAPA:35343 xref: FMA:16486 xref: GAID:850 xref: MA:0001167 xref: MESH:D005267 xref: NCIT:C52816 xref: SCTID:181051004 xref: UMLS:C0015808 {source="ncithesaurus:Femoral_Nerve"} xref: VHOG:0001411 xref: Wikipedia:Femoral_nerve is_a: UBERON:0003431 ! leg nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png" xsd:anyURI [Term] id: UBERON:0001268 name: peritoneal fluid def: "Transudate contained in the peritoneal cavity." [FMA:16515] subset: pheno_slim subset: uberon_slim xref: BTO:0001031 xref: EMAPA:35683 xref: FMA:16515 xref: MA:0002531 xref: MESH:D001202 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ncithesaurus:Peritoneal_Fluid xref: Wikipedia:Peritoneal_fluid is_a: UBERON:0007779 ! transudate is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland is_a: UBERON:0036217 ! coelomic fluid [Term] id: UBERON:0001269 name: acetabular part of hip bone def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]." [Wikipedia:Acetabulum] subset: pheno_slim subset: uberon_slim synonym: "acetabular region" EXACT [VHOG:0000974] synonym: "acetabulum" EXACT [MA:0001335] xref: AAO:0000770 xref: EHDAA:10661 xref: EMAPA:18346 xref: FMA:16579 xref: GAID:206 xref: MA:0001335 xref: MESH:D000077 xref: NCIT:C32042 xref: RETIRED_EHDAA2:0001427 xref: SCTID:182027007 xref: UMLS:C0000962 {source="ncithesaurus:Acetabulum"} xref: VHOG:0000974 xref: Wikipedia:Acetabulum is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 {source="Phenoscape"} ! ilium relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg" xsd:anyURI property_value: external_definition "Cavity for the articulation of the proximal bone of the hind limb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000770", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "whilst WP defines this as a surface, MA treats it as a bone. There are other FMA classes that may be better suited to representing the surface." xsd:string {external_ontology="MA"} property_value: homology_notes "During the transformation from the osteolepiform fins to tetrapod limbs, the appendages and girdles underwent a number of radical changes. The pelvic girdle became a weight-bearing structure by evolution of an ischium, a full mesio-ventral contact between the two sides of the girdle, an ilium, and a contact between the vertebral column and the girdle through a sacral rib. Fore- and hindlimbs shifted laterally by reorientation of the glenoid and the acetabulum.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000974", ontology="VHOG", source="DOI:10.1038/nature04119 Boisvert CA, The pelvic fin and girdle of Panderichthys and the origin of tetrapod locomotion. Nature (2005)", source="http://bgee.unil.ch/"} property_value: taxon_notes "In reptiles and in birds, the acetabula are deep sockets." xsd:string {source="WP"} [Term] id: UBERON:0001270 name: bony pelvis def: "A ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls." [http://medical-dictionary.thefreedictionary.com/bony+pelvis] synonym: "pelvis ossea" EXACT [] synonym: "skeletal system of pelvis" EXACT [FMA:16580] xref: FMA:16580 xref: SCTID:46633002 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: editor_note "TODO add taxon-specific part of relations connecting sub-structures to this." xsd:string property_value: external_ontology_notes "in FMA, this is part of the axial skeletal system" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001271 name: pelvic girdle region def: "The organism subdivision that includes the pelvic girdle skeleton and associated soft tissue. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: There are only two instances in an organism, right and left pelvic girdle regions." [DOI:10.1002/dvdy.22617, FMA:16581, FMA:23217, https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion, https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] subset: uberon_slim subset: vertebrate_core synonym: "girdle - pelvic" RELATED [] synonym: "pelvic girdle" RELATED INCONSISTENT [] xref: EMAPA:37862 {source="MA:th"} xref: FMA:16581 xref: NCIT:C33291 xref: SCTID:360010001 xref: UMLS:C0684083 {source="ncithesaurus:Pelvic_Girdle"} xref: VSAO:0000304 is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0002355 ! pelvic region of trunk relationship: part_of UBERON:0010709 ! pelvic complex property_value: curator_notes "this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). See also comments on obo-anatomy mail list. Note that even though the class includes soft tissue it is more restrictive than 'pelvis' which also includes structures in cavities etc. TODO this needs to be better documented" xsd:string property_value: external_definition "Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]. There is only one instance of the pelvic girdle region per organism.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000304", ontology="VSAO", source="https://orcid.org/0000-0002-6601-2165"} [Term] id: UBERON:0001272 name: innominate bone def: "A fused bone consisting of the ilium, ischium and pubis. Together with the sacrum and coccyx, it comprises the pelvis. [WP,modified]." [https://github.com/obophenotype/uberon/issues/290, https://orcid.org/0000-0002-6601-2165, Wikipedia:Hip_bone] subset: human_reference_atlas subset: uberon_slim synonym: "basipterygium" RELATED [] synonym: "bone of pelvic girdle" BROAD [FMA:16585] synonym: "coxal bone" EXACT [FMA:16585] synonym: "hip bone" EXACT [FMA:16585] synonym: "innominate" BROAD [] synonym: "innominate bone" EXACT [FMA:16585] synonym: "os coxa" EXACT OMO:0003011 [] synonym: "os coxae" EXACT OMO:0003011 [FMA:16585, FMA:TA] synonym: "os innominatum" RELATED OMO:0003011 [Wikipedia:Hip_bone] synonym: "pelvic bone" EXACT [FMA:16585] xref: FMA:16585 xref: GAID:205 xref: SCTID:361776002 xref: Wikipedia:Hip_bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0010428 {source="FMA"} ! flat bone is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001464 {source="FMA"} ! hip relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png" xsd:anyURI property_value: editor_note "currently this class is restricted to exclude the teleost bone as the definition mentions ilium, ischium and pubis. In future we may add a grouping class for girdle bones that supports the appendage" xsd:string property_value: external_ontology_notes "in FMA this is a paired structure. NCITA has 'pelvic bone' but this is the *superclass* of ilium/ischium/pubis. The MA class 'pelvis bone' is actually a superclass of 'pelvic girdle bone' and caudal/sacral vertebra." xsd:string {external_ontology="FMA"} property_value: taxon_notes "The hip/pelvic bone/basipterygium first appears in fishes, where it consists of a simple, usually triangular bone, to which the pelvic fin articulates. The hip bones on each side usually connect with each other at the forward end, and are even solidly fused in lungfishes and sharks, but they never attach to the vertebral column" xsd:string {source="WP"} [Term] id: UBERON:0001273 name: ilium def: "Paired endochondral bone that is the dorsal-most of the pelvic bones, offering attachment areas for gluteal muscles on its main surface [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/105, https://github.com/obophenotype/uberon/issues/60, PHENOSCAPE:ad] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "iliac bone" EXACT [EMAPA:18726] synonym: "ilium bone" EXACT [] synonym: "illium" RELATED [] synonym: "os iliacum" EXACT [] synonym: "os ilii" EXACT [] synonym: "os ilium" EXACT OMO:0003011 [FMA:16589, FMA:TA] xref: AAO:0000772 xref: CALOHA:TS-2200 xref: EFO:0003049 xref: EMAPA:18726 xref: FMA:16589 xref: GAID:207 xref: galen:Ilium xref: MA:0001336 xref: MESH:D007085 xref: NCIT:C32765 xref: SCTID:182029005 xref: UMLS:C0020889 {source="ncithesaurus:Ilium"} xref: Wikipedia:Ilium_(bone) is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0015054 ! iliac endochondral element is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0010714 {source="cjm"} ! iliac cartilage element relationship: dubious_for_taxon NCBITaxon:8570 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Paired, rodlike endochondral bones that constitute the anterior pelvic girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000772", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "this is_a hip bone in MA." xsd:string {external_ontology="MA"} property_value: has_relational_adjective "iliac" xsd:string property_value: taxon_notes "All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium" xsd:string {source="WP"} [Term] id: UBERON:0001274 name: ischium def: "Endochondral bone that is paired, forming the posterior part of the pelvis, articulating with the pubis and ilium." [VSAO:0005006, VSAO:NI, Wikipedia:Ischium] subset: pheno_slim subset: uberon_slim synonym: "ischial bone" EXACT [EMAPA:18727] synonym: "ischium bone" EXACT [] synonym: "os ischii" RELATED OMO:0003011 [AAO:0000860, Wikipedia:Ischium] xref: AAO:0000860 xref: EMAPA:18727 xref: FMA:16592 xref: GAID:208 xref: galen:Ischium xref: MA:0001337 xref: MESH:D007512 xref: NCIT:C32884 xref: SCTID:182025004 xref: UMLS:C0022122 {source="ncithesaurus:Ischium"} xref: VSAO:0005006 xref: Wikipedia:Ischium is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone is_a: UBERON:0008202 {source="MA"} ! bone of hip region is_a: UBERON:0015056 ! ischial endochondral element is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0006254 {source="cjm"} ! ischial cartilage element relationship: part_of UBERON:0001272 ! innominate bone property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Paired bones of endochondral origin that constitute the posterior elements of the pelvic girdle. They are synostotically fused to each other and form the posterior part of the acetabulum.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000860", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "this is_a hip bone in MA; in FMA it is a zone of bone organ." xsd:string {external_ontology="MA"} property_value: has_relational_adjective "ischial" xsd:string [Term] id: UBERON:0001275 name: pubis def: "A paired endochondral bone making up the anteroventral region of the tripartite pelvic girdle forming part of the ventral edge of the acetabulum. The origin site of many proximal hindlimb muscles. [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/68, PHENOSCAPE:ad] subset: pheno_slim subset: uberon_slim synonym: "os pubis" RELATED [Wikipedia:Pubis_(bone)] synonym: "pubic bone" RELATED [Wikipedia:Pubis_(bone)] synonym: "pubis bone" RELATED [Wikipedia:Pubis_(bone)] xref: AAO:0000861 xref: EMAPA:18728 xref: FMA:16595 xref: galen:Pubis xref: MA:0001338 xref: MESH:D011630 xref: NCIT:C33423 xref: SCTID:182035005 xref: UMLS:C0034014 {source="ncithesaurus:Pubic_Bone"} xref: Wikipedia:Pubis_(bone) is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone is_a: UBERON:0008202 {source="MA"} ! bone of hip region is_a: UBERON:0015055 ! pubic endochondral element is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Paired, cartilaginous (ocassionally calcified) elements that form the ventral portion of the pelvic girdle. Each is located ventral to the acetabulum between the anteroventral margin of the ischium and the posteroventral margin of the illium. When the element calcifies or ossifies, its articulation with adjacent elements is difficult to distinguish. Both pubes are synchondrotically fused to one another.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000861", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "isa bone zone in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001276 name: epithelium of stomach def: "The epithelial layer of the stomach ." [MP:0000471] subset: pheno_slim synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic] synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic] synonym: "epithelium of ventriculus" EXACT [OBOL:automatic] synonym: "gastric epithelium" RELATED [BTO:0000500] synonym: "stomach epithelial tissue" EXACT [OBOL:automatic] synonym: "stomach epithelium" EXACT [OBOL:automatic] synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic] synonym: "ventriculus epithelium" EXACT [OBOL:automatic] xref: BTO:0000500 xref: CALOHA:TS-2068 xref: EHDAA2:0001918 xref: EMAPA:17023 xref: FMA:17091 xref: MA:0001610 xref: SCTID:64977002 xref: VHOG:0001433 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0004808 ! gastrointestinal system epithelium is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0001199 ! mucosa of stomach property_value: external_ontology_notes "in FMA this is classified as simple columnar, MA divides this into squamous and glandular" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001277 name: intestinal epithelium def: "Epithelial layer that lines the intestine." [UBERON:cjm] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "bowel epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bowel" EXACT [OBOL:automatic] synonym: "epithelial tissue of intestine" EXACT [OBOL:automatic] synonym: "epithelium of bowel" EXACT [OBOL:automatic] synonym: "epithelium of intestine" EXACT [OBOL:automatic] synonym: "intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "intestine epithelium" RELATED [] synonym: "villous epithelium" NARROW [ZFA:0005124] xref: BTO:0000781 xref: EMAPA:32873 xref: FMA:17229 xref: MA:0001536 xref: NCIT:C49240 xref: SCTID:266135004 xref: TAO:0005124 xref: UMLS:C0226890 {source="ncithesaurus:Intestinal_Epithelium"} xref: Wikipedia:Intestinal_epithelium xref: ZFA:0005124 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium relationship: part_of UBERON:0001242 ! intestinal mucosa property_value: external_definition "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005124", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001278 name: epithelium of large intestine def: "An epithelium that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal epithelium" EXACT [] synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "large intestine epithelium" EXACT [] xref: CALOHA:TS-2105 xref: EMAPA:35466 xref: FMA:17301 xref: MA:0001545 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001279 name: portal triad def: "A multi-organ-part structure that consists of three vessels of the portal lobule including the bile duct, a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MGI:csmith, MP:0008993] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "trias hepatica" EXACT [] synonym: "trias hepatica" RELATED OMO:0003011 [Wikipedia:Portal_triad] xref: FMA:17523 xref: MA:0002499 xref: NCIT:C33342 xref: SCTID:362192000 xref: UMLS:C0227514 {source="ncithesaurus:Portal_Triad"} xref: Wikipedia:Portal_triad is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001172 ! hepatic acinus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/62/Portal_triad.JPG" xsd:anyURI property_value: terminology_notes "The misnomer 'portal triad' traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver." xsd:string [Term] id: UBERON:0001280 name: liver parenchyma alt_id: UBERON:0003223 def: "The functional units of the liver including the lobules." [MP:0008986] subset: pheno_slim synonym: "hepatic parenchyma" EXACT [FMA:17540] synonym: "hepatic parenchyme" RELATED [VHOG:0000539] synonym: "liver parenchyme" EXACT [XAO:0000454] synonym: "parenchyma of liver" EXACT [FMA:17540] xref: AAO:0010405 xref: EHDAA2:0001004 xref: EHDAA:2201 xref: EMAPA:17203 xref: FMA:17540 xref: MA:0000366 xref: NCIT:C32735 xref: SCTID:363535004 xref: UMLS:C0736268 xref: VHOG:0000539 xref: XAO:0000454 is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum relationship: part_of UBERON:0002107 ! liver property_value: homology_notes "the (liver) tubular structure (dual layered parenchyma) appears to be conserved among all embryonic vertebrates (...) it is not unlikely that all vertebrate livers share the same fundamental functional unit.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000539", ontology="VHOG", source="DOI:10.1002/ar.20524 Hardman RC, Volz DC, Kullman SW, Hinton DE, An in vivo look at vertebrate liver architecture: three-dimensional reconstruction from Medaka (Oryzias latipes). The Anatomical Record (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001281 name: hepatic sinusoid alt_id: UBERON:0003275 def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hepatic sinusoids" RELATED [] synonym: "liver hepatic sinusoids" EXACT [EHDAA2:0000999] synonym: "liver sinusoid" EXACT [] synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic] synonym: "sinusoid of liver" EXACT [OBOL:automatic] synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic] synonym: "vas capillare sinusoideum" EXACT [] synonym: "vas sinusoideum" EXACT OMO:0003011 [Wikipedia:Hepatic_sinusoid] xref: EHDAA2:0000999 xref: EMAPA:17365 xref: FMA:17543 xref: MA:0000367 xref: NCIT:C32733 xref: SCTID:67435004 xref: TAO:0005091 xref: UMLS:C0227523 {source="ncithesaurus:Hepatic_Sinusoid"} xref: VHOG:0000708 xref: Wikipedia:Hepatic_sinusoid xref: ZFA:0005091 is_a: UBERON:0003909 ! sinusoid is_a: UBERON:0015796 ! liver blood vessel relationship: part_of UBERON:0004647 ! liver lobule relationship: part_of UBERON:0006877 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! vasculature of liver relationship: present_in_taxon NCBITaxon:9606 property_value: homology_notes "(...) the amphibian liver has characteristics in common with both fish and terrestrial vertebrates. (...) The histological structure of the liver is similar to that in other vertebrates, with hepatocytes arranged in clusters and cords separated by a meshwork of sinusoids and the presence of the traditional triad of portal venule, hepatic arteriole, and bile duct.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000708", ontology="VHOG", source="DOI:10.1053/ax.2000.7133 Crawshaw GJ, Weinkle TK, Clinical and pathological aspects of the amphibian liver. Seminars in Avian and Exotic Pet Medicine (2000)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001282 name: intralobular bile duct def: "The tubules located between the bile canaliculi and interlobular bile ducts near the outer edge of a classic liver lobule." [MGI:csmith, MP:0009499] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "canal of Hering" RELATED [] synonym: "canal of Herring" EXACT [FMA:17545] synonym: "canals of Hering" RELATED OMO:0003004 [Wikipedia:Canals_of_Hering] synonym: "cholangiole" EXACT [FMA:17545] synonym: "duct of Herring" RELATED [Wikipedia:Canals_of_Hering] synonym: "ductus interlobularis bilifer" EXACT OMO:0003011 [FMA:17545, FMA:TA] synonym: "intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering] xref: FMA:17545 xref: MA:0002669 xref: NCIT:C32255 xref: SCTID:227002 xref: SCTID:269922006 xref: UMLS:C0227517 {source="ncithesaurus:Canal_of_Hering"} xref: Wikipedia:Canals_of_Hering is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct is_a: UBERON:0014716 ! interlobular duct relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct)" xsd:string [Term] id: UBERON:0001283 name: bile canaliculus def: "An intercellular channel that takes up bile from hepatocytes, transporting it to the bile ducts." [MP:0008991] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bile canaliculi" RELATED OMO:0003004 [Wikipedia:Bile_canaliculus] synonym: "bile capillary" RELATED [BTO:0002841] synonym: "biliary canaliculus" RELATED [BTO:0002841] xref: BTO:0002841 xref: EMAPA:36534 xref: FMA:17547 xref: MA:0002495 xref: MESH:D001648 xref: NCIT:C32202 xref: SCTID:270023005 xref: TAO:0005163 xref: UMLS:C0005393 {source="ncithesaurus:Bile_Canaliculus"} xref: Wikipedia:Bile_canaliculus xref: ZFA:0005163 is_a: UBERON:0000464 {source="FMA", source="ZFA"} ! anatomical space relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule relationship: part_of UBERON:0005452 {source="FMA"} ! hepatic cord property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png" xsd:anyURI property_value: function_notes "conducts the flow of bile countercurrent to the direction of portal blood flow and connects with the canal of Hering[DOI:10.1002/cphy.c120027]" xsd:string property_value: structure_notes "The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP]" xsd:string [Term] id: UBERON:0001284 name: renal column def: "A column of tissue that is histologically identical to tissue found in the renal cortex, and which is located in the medullary region of kidney, between the renal pyramids." [https://orcid.org/0000-0002-1572-1316, PMID:17449786] comment: The renal columns have been thought of as being part of the medulla only because they are located in the inner, medullary region of the kidney, rather than in the outer, cortical region. Histologically, they are extensions of the renal cortex. subset: human_reference_atlas subset: uberon_slim synonym: "Bertin's column" RELATED [FMA:17633] synonym: "column of Bertin" RELATED [FMA:17633] synonym: "column of Bertini" EXACT [] synonym: "columna Bertini" EXACT OMO:0003011 [FMA:17633, FMA:TA] synonym: "columnae renales" RELATED OMO:0003011 [Wikipedia:Renal_column] synonym: "cortical column" BROAD [ncithesaurus:Cortical_Column] synonym: "kidney column" EXACT [MA:0001651] synonym: "renal column of Bertini" EXACT [] synonym: "renal cortical column" EXACT [] xref: EMAPA:37487 {source="MA:th"} xref: FMA:17633 xref: MA:0001651 xref: NCIT:C32387 xref: UMLS:C0736346 xref: Wikipedia:Renal_column is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:8410073 ! medullary region of kidney relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg" xsd:anyURI [Term] id: UBERON:0001285 name: nephron def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]." [PMID:9268568, Wikipedia:Nephron] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "mature nephron" NARROW [EMAPA:28491] synonym: "nephroneum" RELATED OMO:0003011 [Wikipedia:Nephron] synonym: "tubulus renalis" RELATED OMO:0003011 [Wikipedia:Nephron] xref: BTO:0000924 xref: CALOHA:TS-1312 xref: EMAPA:28491 xref: EMAPA:35592 xref: EV:0100384 xref: FMA:17640 xref: GAID:428 xref: MA:0000375 xref: MESH:D009399 xref: NCIT:C13048 xref: SCTID:361337001 xref: TAO:0002153 xref: UMLS:C0027713 {source="ncithesaurus:Nephron"} xref: Wikipedia:Nephron xref: ZFA:0005282 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0004208 {evidence="definitional"} ! nephrogenic mesenchyme relationship: immediate_transformation_of UBERON:0010532 {source="Bgee:AN"} ! primitive nephron relationship: part_of UBERON:0007684 {source="FMA"} ! uriniferous tubule relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png" xsd:anyURI property_value: editor_note "kidney terms require review for cross-vertebrate compatibility and developmental relationships." xsd:string property_value: external_definition "Functional unit of the kidney that filters waste.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002153", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)" xsd:string {source="GO"} [Term] id: UBERON:0001286 name: Bowman's space def: "A narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP]." [http://medical-dictionary.thefreedictionary.com/bowman's+space, MP:0011499, Wikipedia:Bowman's_space] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Bowman's space" EXACT [] synonym: "Bowmanb%s space" RELATED [TAO:0005312] synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space] synonym: "glomerular capsule space" EXACT [MP:0011499] synonym: "glomerular urinary space" EXACT [MP:0011499] synonym: "inter-glomerular space" EXACT [ZFA:0005283, ZFA:0005312] synonym: "pronephric capsular space" EXACT [ZFA:0005312] synonym: "renal capsular space" EXACT [ZFA:0005283] synonym: "urinary space" EXACT [] synonym: "urinary space of renal corpuscle" EXACT [EMAPA:28263] xref: EMAPA:27985 xref: EMAPA:28263 xref: FMA:17676 xref: MA:0001664 xref: NCIT:C33840 xref: SCTID:244284006 xref: TAO:0005283 xref: TAO:0005312 xref: UMLS:C0227643 {source="ncithesaurus:Urinary_Space"} xref: Wikipedia:Bowman's_space xref: ZFA:0005283 xref: ZFA:0005312 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001230 ! glomerular capsule property_value: editor_note "TODO - fix ZFA" xsd:string property_value: external_definition "Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005283", external_class="TAO:0005312", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001287 name: proximal convoluted tubule def: "The proximal convoluted tubule is the most proximal portion of the proximal tubule and extends from the glomerular capsule to the proximal straight tubule." [GO:0072019] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "1st convoluted tubule" RELATED [] synonym: "first convoluted tubule" RELATED [] synonym: "kidney proximal convoluted tubule" RELATED [EMAPA:28287] synonym: "PCT" RELATED [] synonym: "proximal convoluted renal tubule" EXACT [] synonym: "renal proximal convoluted tubule" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "tubulus contortus proximalis" EXACT [] synonym: "tubulus contortus proximalis" RELATED OMO:0003011 [Wikipedia:Proximal_convoluted_tubule] synonym: "tubulus convolutus proximalis" RELATED OMO:0003011 [] xref: CALOHA:TS-2198 xref: EMAPA:28287 xref: EV:0100388 xref: FMA:17693 xref: MA:0001669 xref: NCIT:C33417 xref: SCTID:362220008 xref: TAO:0005290 xref: UMLS:C1514580 {source="ncithesaurus:Proximal_Convoluted_Tube"} xref: Wikipedia:Proximal_convoluted_tubule xref: ZFA:0005290 is_a: UBERON:0006534 {source="MA"} ! renal convoluted tubule is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme relationship: part_of UBERON:0004134 {notes="MA uses subclass", source="GOC:mtg_kidney_jan10"} ! proximal tubule property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png" xsd:anyURI property_value: external_definition "Renal tubule that connects to the renal corpuscle.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005290", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001288 name: loop of Henle def: "The section of the renal tubule in the kidney medulla with a hairpin bend; consists of a descending limb and an ascending limb, and is situated between the proximal convoluted tubule to the distal convoluted tubule; it functions to reabsorb water and ions from the urine." [MGI:csmith, MP:0004755] subset: pheno_slim subset: uberon_slim synonym: "ansa nephroni" EXACT OMO:0003011 [Wikipedia:Loop_of_Henle] synonym: "Henle loop" EXACT [] synonym: "Henle's loop" EXACT [] xref: BTO:0004608 xref: EMAPA:19280 xref: EV:0100390 xref: FMA:17698 xref: GAID:437 xref: MA:0001675 xref: MESH:D008138 xref: NCIT:C33006 xref: SCTID:361335009 xref: UMLS:C0023986 {source="ncithesaurus:Loop_of_Henle"} xref: VHOG:0001270 xref: Wikipedia:Loop_of_Henle is_a: UBERON:0007685 ! region of nephron tubule relationship: dubious_for_taxon NCBITaxon:8353 relationship: present_in_taxon NCBITaxon:8782 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png" xsd:anyURI property_value: editor_note "the definitions of some kidney parts (e.g. proximal straight tubule) refer to Henle's loop, even in species where this may not be present. Requires review." xsd:string property_value: external_definition "A highly specialized segment of the mammalian kidney tubules, that dips into the medulla. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.648, see_Liem_KF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001270", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: function_notes "The loop of Henle plays an important role in creating a concentration gradient in the medulla of the kidney. It is involved in reabsorption of filtered water and ions including sodium, potassium and calcium, and independently regulates both the volume and osmolarity of body fluids." xsd:string {source="DOI:10.1371/journal.pone.0099864"} property_value: taxon_notes "The structure differs considerably between species; there is a definite physical loop of Henle in the mammalian and avian renal systems but this seems to be absent in Xenopus. However, homologs of some, but not all, molecular markers (e.g. cldn8 and clcnk) of the mammalian loop of Henle were found to be present in the pronephros of the frog larva ." xsd:string {source="DOI:10.1371/journal.pone.0099864"} [Term] id: UBERON:0001289 name: descending limb of loop of Henle def: "The portion of the renal tubule that constitutes the proximal part of the loop of Henle, has low permeability to ions and urea, and is highly permeable to water; it consists of an initial short thick segment lined by low simple cuboidal epithelium and a long thin segment lined by simple squamous epithelium; however, this distinction is not as important physiologically as in the ascending limb, so often the two are treated as one structure." [MGI:anna, MP:0011341] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "descending limb" BROAD [] synonym: "descending limb of Henle's loop" EXACT [] synonym: "loop of Henle descending limb" EXACT [] xref: EMAPA:35511 xref: FMA:17705 xref: MA:0001679 xref: NCIT:C32456 xref: SCTID:245350001 xref: UMLS:C0227657 {source="ncithesaurus:Descending_Limb_of_the_Henle_s_Loop"} xref: Wikipedia:Descending_limb_of_loop_of_henle is_a: UBERON:0007685 {source="FMA"} ! region of nephron tubule relationship: part_of UBERON:0001288 {source="FMA"} ! loop of Henle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png" xsd:anyURI [Term] id: UBERON:0001290 name: proximal straight tubule alt_id: UBERON:0005166 def: "The proximal straight tubule is the part of the descending limb that extends from the proximal convoluted tubule to the descending thin tubule." [GO:0072020] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "pars recta" RELATED [] synonym: "pars recta tubuli renalis" RELATED [BTO:0000055] synonym: "proximal tubule segment 3" RELATED [MA:0002614] synonym: "S3" EXACT [GO:0072020] synonym: "segment 3 of proximal tubule" RELATED [EMAPA:29661] synonym: "thick descending limb of proximal tubule" EXACT [] synonym: "tubulus rectus proximalis" EXACT [] xref: BTO:0000055 xref: EMAPA:29661 xref: EMAPA:29669 xref: FMA:17716 xref: MA:0002614 xref: TAO:0005291 xref: Wikipedia:Proximal_straight_tubule xref: ZFA:0005291 is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0009035 {source="MA"} ! renal straight tubule relationship: part_of UBERON:0001289 {source="MA"} ! descending limb of loop of Henle relationship: part_of UBERON:0004134 {notes="MA uses subclass", source="GOC:mtg_kidney_jan10"} ! proximal tubule relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "TODO - is S3 exactly coincident with PST? todo - ensure relationships work across species (loop of Henle)" xsd:string property_value: external_definition "Portion of the renal tubule which is just posterior to the proximal convoluted tubule.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005291", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001291 name: thick ascending limb of loop of Henle def: "The distal sub-portion of the ascending loop of Henle which is lined by simple cuboidal epithelium and enters the renal cortex to empty a hypotonic filtrate into the distal convoluted tubule." [MGI:anna, MP:0011344] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ascending thick limb" EXACT [] synonym: "distal straight tubule" EXACT [MA:0001677] synonym: "loop of Henle ascending limb thick segment" EXACT [MA:0001677] synonym: "straight portion of distal convoluted renal tubule" EXACT [] synonym: "straight portion of distal convoluted tubule" EXACT [FMA:17722] synonym: "thick ascending limb" EXACT [] synonym: "thick ascending limb of distal tubule" EXACT [FMA:17722] synonym: "thick ascending limb of Henle's loop" EXACT [] synonym: "tubulus rectus distalis" EXACT [FMA:17722] synonym: "tubulus rectus distalis" RELATED OMO:0003011 [Wikipedia:Thick_ascending_limb_of_loop_of_Henle] xref: EMAPA:28396 xref: EMAPA:29671 xref: EMAPA:35512 xref: FMA:17722 xref: MA:0001677 xref: SCTID:244953001 xref: Wikipedia:Thick_ascending_limb_of_loop_of_Henle is_a: UBERON:0009035 {source="MA"} ! renal straight tubule relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png" xsd:anyURI property_value: editor_note "TODO - thick/thin check. Also - does the loop of Henle overlap the distal convoluted tubule? FMA divides DCT into straight and convoluted portions" xsd:string [Term] id: UBERON:0001292 name: distal convoluted tubule def: "The first segment of the nephron lying just downstream from the loop of Henle, immediately after the macula densa." [GO:0072025] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "distal convoluted renal tubule" EXACT [] synonym: "second convoluted tubule" RELATED [] synonym: "tubulus contortus distalis" EXACT [] synonym: "tubulus contortus distalis" RELATED OMO:0003011 [Wikipedia:Distal_convoluted_tubule] synonym: "tubulus convolutus distalis" RELATED OMO:0003011 [] xref: EMAPA:28393 xref: EV:0100389 xref: FMA:17721 xref: MA:0001666 xref: NCIT:C32469 xref: SCTID:361336005 xref: UMLS:C0022676 {source="ncithesaurus:Distal_Convoluted_Tubule"} xref: Wikipedia:Distal_convoluted_tubule is_a: UBERON:0006534 {source="MA"} ! renal convoluted tubule is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0003220 ! metanephric mesenchyme relationship: part_of UBERON:0004135 {source="EMAPA", source="GO", source="MA-modified-from-isa"} ! distal tubule relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png" xsd:anyURI property_value: external_definition "a portion of kidney nephron between the loop of Henle and the collecting duct system[Wikipedia:Distal_convoluted_tubule]." xsd:string {source="Wikipedia:Distal_convoluted_tubule"} property_value: function_notes "in humans it is responsible for the reabsorption of about 5% of filtered sodium via the thiazide-sensitive Na-Cl symporter." xsd:string [Term] id: UBERON:0001293 name: outer medulla of kidney def: "The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]." [DOI:10.1371/journal.pone.0099864, GOC:mtg_kidney_jan10] subset: pheno_slim synonym: "kidney outer medulla" RELATED [BTO:0001746] synonym: "outer renal medulla" EXACT [] synonym: "outer zone of medulla of kidney" EXACT [] synonym: "outer zone of renal medulla" EXACT [] synonym: "renal outer medulla" EXACT [BTO:0001746] synonym: "set of outer region of renal pyramids" RELATED [FMA:17733] synonym: "zona externa (medullaris renalis)" EXACT OMO:0003011 [FMA:17733, FMA:TA] synonym: "zona externa medullae renalis" EXACT OMO:0003011 [FMA:17733, FMA:TA] xref: BTO:0001746 xref: CALOHA:TS-0508 xref: EMAPA:28310 xref: FMA:17733 xref: MA:0001653 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000362 ! renal medulla [Term] id: UBERON:0001294 name: inner medulla of kidney def: "Innermost region of the mammalian kidney." [GO:0072053] subset: human_reference_atlas subset: pheno_slim synonym: "inner renal medulla" EXACT [] synonym: "inner zone of medulla of kidney" EXACT [] synonym: "inner zone of renal medulla" EXACT [] synonym: "kidney inner medulla" RELATED [BTO:0001745] synonym: "renal inner medulla" EXACT [BTO:0001745] synonym: "set of inner region of renal pyramids" EXACT [] synonym: "zona interna (medullaris renalis)" EXACT OMO:0003011 [FMA:17734, FMA:TA] synonym: "zona interna medullae renalis" EXACT OMO:0003011 [FMA:17734, FMA:TA] xref: BTO:0001745 xref: CALOHA:TS-0506 xref: EMAPA:28349 xref: FMA:17734 xref: MA:0001652 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000362 ! renal medulla relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "unique to mammals" xsd:string {source="GO:0072053"} [Term] id: UBERON:0001295 name: endometrium def: "The glandular mucous membrane lining of the uterine cavity that is hormonally responsive during the estrous/menstrual cycle and during pregnancy." [MESH:A05.360.319.679.490, MGI:smb, MP:0004896] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "tunica mucosa (endometrium)" EXACT [FMA:17742] synonym: "tunica mucosa uteri" EXACT OMO:0003011 [Wikipedia:Endometrium] synonym: "uterine endometrium" EXACT [BTO:0001422] synonym: "uterine mucosa" RELATED [] synonym: "uterine mucous membrane" RELATED [BTO:0001422] xref: BTO:0001422 xref: CALOHA:TS-0276 xref: EFO:0000980 xref: EMAPA:29917 xref: EV:0100115 xref: FMA:17742 xref: GAID:377 xref: MA:0000390 xref: MAT:0000319 xref: MESH:D004717 xref: MIAA:0000319 xref: NCIT:C12313 xref: SCTID:278867007 xref: UMLS:C0014180 {source="ncithesaurus:Endometrium"} xref: VHOG:0001285 xref: Wikipedia:Endometrium is_a: UBERON:0019042 ! reproductive system mucosa relationship: part_of UBERON:0000459 {source="FMA"} ! uterine wall relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg" xsd:anyURI property_value: external_definition "The mucous membrane lining the uterus. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001285", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Endometrium"} property_value: external_ontology_notes "in FMA this is subdivided into basal and outer" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "endometrial" xsd:string property_value: homology_notes "The maternal part of the placenta (of eutherian mammals) is the vascularized and glandular uterine lining, or endometrium.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001285", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.144", source="http://bgee.unil.ch/"} property_value: taxon_notes "Animals that have estrous cycles reabsorb the endometrium if conception does not occur during that cycle. Animals that have menstrual cycles shed the endometrium through menstruation instead" xsd:string [Term] id: UBERON:0001296 name: myometrium def: "The smooth muscle coat of the uterus, which forms the main mass of the organ and surrounds and supports the endometrium." [MESH:A02.633.570.500, MGI:brs, MP:0008256] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "tunica muscularis" RELATED OMO:0003011 [Wikipedia:Myometrium] synonym: "tunica muscularis (myometrium)" EXACT [] synonym: "uterine myometrium" RELATED [BTO:0000907] synonym: "uterine smooth muscle" RELATED [] xref: BTO:0000907 xref: CALOHA:TS-0652 xref: EFO:0001970 xref: EMAPA:29923 xref: EV:0100116 xref: FMA:17743 xref: GAID:171 xref: MA:0000391 xref: MESH:D009215 xref: NCIT:C12314 xref: SCTID:279879004 xref: UMLS:C0027088 {source="ncithesaurus:Myometrium"} xref: VHOG:0001281 xref: Wikipedia:Myometrium is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: part_of UBERON:0000459 {source="FMA"} ! uterine wall property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg" xsd:anyURI property_value: external_definition "The muscular wall of the uterus. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001281", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/myometrium"} property_value: function_notes "The myometrium stretches (the smooth muscle cells expand in both size and number) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss." xsd:string property_value: has_relational_adjective "myometrial" xsd:string property_value: homology_notes "In all mammals, the uterus develops as a specialization of the paramesonephric or Müllerian ducts, which gives rise to the infundibula, oviducts, uterus, cervix, and anterior vagina. Morphogenetic events common to development of all uteri include: 1) differentiation and growth of the myometrium, 2) differentiation and morphogenesis of the endometrial glands, and 3) organization and stratification of endometrial stroma. Uterine development is initiated in the fetus, but is only completed postnatally with differentiation and development of the endometrial glands.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001281", ontology="VHOG", source="PMID:15471813 Spencer TE, Bazer FW, Uterine and placental factors regulating conceptus growth in domestic animals. Journal of Animal Science (2004)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001297 name: serosa of uterus def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium] synonym: "perimetrium" EXACT [Wikipedia:Perimetrium] synonym: "serous coat of uterus" EXACT [Wikipedia:Perimetrium] synonym: "serous membrane of uterus" EXACT [OBOL:automatic] synonym: "tunica serosa (perimetrium)" EXACT [] synonym: "tunica serosa uteri" EXACT OMO:0003011 [FMA:17744, FMA:TA] synonym: "uterine serosa" EXACT [] synonym: "uterus serosa" EXACT [] synonym: "uterus serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of uterus" EXACT [] xref: EMAPA:37792 {source="MA:th"} xref: FMA:17744 xref: MA:0001729 xref: NCIT:C33298 xref: SCTID:253705006 xref: UMLS:C0227824 {source="ncithesaurus:Perimetrium"} xref: Wikipedia:Perimetrium is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000459 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! uterine wall property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg" xsd:anyURI property_value: editor_note "TODO - check for parallel structure with peritoneum" xsd:string [Term] id: UBERON:0001298 name: psoas major muscle def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [Wikipedia:Psoas_major_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "m. psoas major" RELATED OMO:0003011 [Wikipedia:Psoas_major_muscle] synonym: "psoas major" EXACT [MA:0002358] xref: BTO:0001877 xref: EMAPA:18169 xref: FMA:18060 xref: MA:0002358 xref: NCIT:C33420 xref: SCTID:244952006 xref: UMLS:C0224419 {source="ncithesaurus:Psoas_Major"} xref: Wikipedia:Psoas_major_muscle is_a: UBERON:0008450 {source="MA"} ! psoas muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI [Term] id: UBERON:0001299 name: glans penis def: "The conic expansion of the corpus spongiosum that forms the head of the penis." [MGI:anna, MP:0009102] subset: pheno_slim subset: uberon_slim synonym: "balanus" RELATED [BTO:0003118] synonym: "coronal sulcus" RELATED INCONSISTENT [Wikipedia:Glans_penis] synonym: "glans" BROAD [EV:0100108] xref: BTO:0003118 xref: EMAPA:18988 xref: EV:0100108 xref: FMA:18247 xref: GAID:0000012 xref: MA:0002726 xref: NCIT:C12324 xref: SCTID:263378009 xref: UMLS:C0227948 {source="ncithesaurus:Glans_Penis"} xref: VHOG:0001475 xref: Wikipedia:Glans_penis is_a: UBERON:0035651 ! glans relationship: immediate_transformation_of UBERON:0013239 {source="Bgee:AN"} ! future glans penis relationship: part_of UBERON:0000989 ! penis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png" xsd:anyURI [Term] id: UBERON:0001300 name: scrotum def: "The external sac of skin that encloses the testes. It is an extension of the abdomen, and in placentals is located between the penis and anus." [ISBN:0-683-40008-8, MP:0002669, Wikipedia:Scrotum] subset: pheno_slim subset: uberon_slim xref: BTO:0003098 xref: CALOHA:TS-2341 xref: EMAPA:19296 xref: FMA:18252 xref: GAID:393 xref: galen:Scrotum xref: MA:0000409 xref: MESH:D012611 xref: NCIT:C12785 xref: SCTID:265794003 xref: UMLS:C0036471 {source="ncithesaurus:Scrotum"} xref: Wikipedia:Scrotum is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: develops_from UBERON:0011756 {source="Wikipedia"} ! male genital swelling relationship: part_of UBERON:0004053 ! external male genitalia property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png" xsd:anyURI property_value: has_relational_adjective "scrotal" xsd:string property_value: taxon_notes "In elephants the testes remain in the abdomen" xsd:string {source="PMC1570914", taxon="NCBITaxon:9780"} property_value: taxon_notes "In hedgehogs the testes remain in the inguinal canal" xsd:string {source="PMC1570914", taxon="NCBITaxon:9363"} property_value: taxon_notes "In humans and some other mammals, the base of the scrotum becomes covered with pubic hair at puberty" xsd:string {taxon="NCBITaxon:9606"} property_value: taxon_notes "In marsupials, the scrotum is not homologous to the eutherian scrotum, and development is under the control of X-linked genes, not androgens" xsd:string {source="PMID:10984412", taxon="NCBITaxon:9263"} property_value: taxon_notes "In marsupials, the scrotum is positioned in the caudal area of the abdomen, in the same position as the pouch in females. It has been suggested that the pouch and marsupial scrotum are sexual homologs, but it is more likely they arise from different primordia in the same morphogenetic field" xsd:string {source="ISBN:113945742X", taxon="NCBITaxon:9263"} property_value: taxon_notes "The scrotum of marsupials is not homologous with the scrotum of mammals[ISBN:113945742X]" xsd:string [Term] id: UBERON:0001301 name: epididymis def: "The elongated structure connected to the posterior surface of the testis that transports, stores, and matures spermatozoa between testis and vas deferens." [MGI:pvb, MP:0002631] subset: efo_slim subset: pheno_slim subset: uberon_slim xref: BTO:0000408 xref: CALOHA:TS-0285 xref: EFO:0000982 xref: EMAPA:19290 xref: EV:0100103 xref: FMA:18255 xref: GAID:397 xref: galen:Epididymis xref: MA:0000397 xref: MAT:0000130 xref: MESH:D004822 xref: MIAA:0000130 xref: NCIT:C12328 xref: SCTID:181432000 xref: UMLS:C0014533 {source="ncithesaurus:Epididymis"} xref: VHOG:0001265 xref: Wikipedia:Epididymis is_a: UBERON:0000025 ! tube is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct relationship: part_of UBERON:0006947 {source="FMA"} ! male genital duct property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg" xsd:anyURI property_value: editor_note "Kardong has epididymis in elasmobranch" xsd:string property_value: has_relational_adjective "epididymal" xsd:string property_value: structure_notes "Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells." xsd:string property_value: taxon_notes "A similar, but probably non-homologous, structure is found in cartilaginous fishes" xsd:string {source="WP"} [Term] id: UBERON:0001302 name: right fallopian tube def: "A fallopian tube that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] synonym: "right oviduct" BROAD [] synonym: "right uterine tube" EXACT [] xref: EMAPA:37369 {source="MA:th"} xref: FMA:18483 xref: MA:0001717 xref: NCIT:C33475 xref: SCTID:280106006 xref: UMLS:C0227900 {source="ncithesaurus:Right_Fallopian_Tube"} is_a: UBERON:0003889 ! fallopian tube property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.2/assets/3d-vh-f-fallopian-tube-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "non-functional in monotremes[ISBN:978-0226870137]" xsd:string [Term] id: UBERON:0001303 name: left fallopian tube def: "A fallopian tube that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] synonym: "left oviduct" BROAD [] synonym: "left uterine tube" EXACT [] xref: EMAPA:37368 {source="MA:th"} xref: FMA:18484 xref: MA:0001716 xref: NCIT:C32959 xref: SCTID:280107002 xref: UMLS:C0227902 {source="ncithesaurus:Left_Fallopian_Tube"} is_a: UBERON:0003889 ! fallopian tube property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.2/assets/3d-vh-f-fallopian-tube-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001304 name: germinal epithelium of ovary def: "Layer of simple cuboidal cells covering surface of ovary[WP]." [PMID:16923182, Wikipedia:Germinal_epithelium_(female), Wikipedia:Talk\:Germinal_epithelium_(female)] comment: Controversial - see article. Requires expert input. Also check BTO placement synonym: "epithelium superficiale (ovarium)" EXACT [] synonym: "female coelomic epithelium" RELATED [EMAPA:17384] synonym: "germinal epithelium (female)" EXACT [Wikipedia:Germinal_epithelium_(female)] synonym: "ovarian surface epithelium" EXACT [BTO:0004483] synonym: "ovary germinal epithelium" EXACT [] synonym: "ovary surface epithelium" RELATED [EMAPA:17963] synonym: "surface epithelium of ovary" EXACT [] xref: BTO:0004483 xref: EHDAA:8126 xref: EMAPA:17963 xref: FMA:18629 xref: MA:0001711 xref: NCIT:C61518 xref: RETIRED_EHDAA2:0001361 xref: SCTID:258308007 xref: UMLS:C0227875 {source="ncithesaurus:Ovarian_Surface_Epithelium"} xref: VHOG:0000630 xref: Wikipedia:Germinal_epithelium_(female) is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0004911 ! epithelium of female gonad relationship: part_of UBERON:0001307 ! capsule of ovary [Term] id: UBERON:0001305 name: ovarian follicle def: "A spherical aggregation of cells in the ovary that contains a single oocyte[WP,modified]." [http://www.repropedia.org/ovarian-follicle, Wikipedia:Ovarian_follicle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "egg follicle" RELATED [ZFA:0001110] synonym: "follicle of ovary" EXACT [] synonym: "follicle of ovary viewed macroscopically" EXACT [FMA:18640] synonym: "folliculi ovarici primarii" RELATED OMO:0003011 [Wikipedia:Ovarian_follicle] synonym: "folliculi ovarici vesiculosi" RELATED OMO:0003011 [Wikipedia:Ovarian_follicle] synonym: "ovary follicle" EXACT [MA:0001707] xref: BTO:0000475 xref: CALOHA:TS-0726 xref: EMAPA:35627 xref: FMA:18640 xref: GAID:371 xref: MA:0001707 xref: MAT:0000449 xref: MESH:D006080 xref: NCIT:C33244 xref: SCTID:361111009 xref: TAO:0001110 xref: UMLS:C0018120 {source="ncithesaurus:Ovarian_Follicle"} xref: VHOG:0001536 xref: Wikipedia:Ovarian_follicle xref: ZFA:0001110 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:8450001 ! egg follicle relationship: develops_from UBERON:0005296 {source="Wikipedia"} ! ovary sex cord relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Human_ovarian_follicle.jpg" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG" xsd:anyURI property_value: editor_note "TODO - align subtypes based on staging, which is taxon-specific" xsd:string property_value: external_definition "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg. Selman et al, 1993.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001110", ontology="TAO", source="ZFIN:curator"} property_value: function_notes "The somatic cell component of the follicle produces hormones important for oocyte development and proper endocrine function" xsd:string property_value: homology_notes "Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001536", ontology="VHOG", source="DOI:10.1146/annurev.cellbio.042308.13350 DeFalco T, Capel B, Gonad morphogenesis in vertebrates: divergent means to a convergent end. Annual review of cell and developmental biology (2009)", source="http://bgee.unil.ch/"} property_value: taxon_notes "These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)" xsd:string [Term] id: UBERON:0001306 name: cumulus oophorus def: "A cluster of cells that project into the cavity of the mature ovarian follicle. It is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,modified]." [Wikipedia:Cumulus_oophorus] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cumulus ovaricus" EXACT OMO:0003011 [FMA:18659] synonym: "discus proligerus" EXACT [] synonym: "ovarian cumulus" EXACT [GO:0001550] xref: EMAPA:35267 xref: FMA:18659 xref: MA:0002414 xref: SCTID:258586009 xref: Wikipedia:Cumulus_oophorus is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034922 ! cell cluster relationship: part_of UBERON:0005170 ! granulosa cell layer relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1164.png" xsd:anyURI [Term] id: UBERON:0001307 name: capsule of ovary def: "A capsule that surrounds a female gonad." [OBOL:automatic] subset: pheno_slim synonym: "ovarian capsule" EXACT [] synonym: "ovary capsule" EXACT [] xref: EMAPA:35626 xref: FMA:18662 xref: MA:0001706 xref: NCIT:C49265 xref: SCTID:258491008 xref: UMLS:C0227877 {source="ncithesaurus:Ovarian_Capsule"} is_a: UBERON:0003893 ! capsule is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0001308 name: external iliac artery def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [Wikipedia:External_iliac_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria iliaca externa" RELATED OMO:0003011 [Wikipedia:External_iliac_artery] xref: BTO:0004666 xref: EHDAA2:0000463 xref: EHDAA:4337 xref: EMAPA:17614 xref: FMA:18805 xref: galen:ExternalIliacArtery xref: MA:0001973 xref: NCIT:C32558 xref: SCTID:181352000 xref: UMLS:C0226398 {source="ncithesaurus:External_Iliac_Artery"} xref: Wikipedia:External_iliac_artery is_a: UBERON:0005609 {source="MA"} ! iliac artery relationship: part_of UBERON:0001191 ! common iliac artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray539.png" xsd:anyURI [Term] id: UBERON:0001309 name: internal iliac artery def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [Wikipedia:Internal_iliac_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria iliaca interna" RELATED OMO:0003011 [Wikipedia:Internal_iliac_artery] synonym: "hypogastric artery" RELATED [BTO:0004667] xref: BTO:0004667 xref: EMAPA:17860 xref: FMA:18808 xref: galen:InternalIliacArtery xref: MA:0001974 xref: NCIT:C32845 xref: SCTID:181346001 xref: UMLS:C0226364 {source="ncithesaurus:Internal_Iliac_Artery"} xref: Wikipedia:Internal_iliac_artery is_a: UBERON:0005609 {source="MA"} ! iliac artery relationship: part_of UBERON:0001191 ! common iliac artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d3/Iliac_artery_bifurcation.PNG" xsd:anyURI [Term] id: UBERON:0001310 name: umbilical artery def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/328, Wikipedia:Umbilical_artery] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "a. umbilicalis" RELATED OMO:0003011 [Wikipedia:Umbilical_artery] xref: BTO:0000841 xref: CALOHA:TS-1077 xref: EHDAA:1026 xref: EHDAA:410 xref: EMAPA:16331 xref: EMAPA:16372 xref: FMA:18820 xref: GAID:516 xref: MA:0002072 xref: MESH:D014469 xref: NCIT:C33827 xref: RETIRED_EHDAA2:0002106 xref: SCTID:261404000 xref: UMLS:C0041632 {source="ncithesaurus:Umbilical_Artery"} xref: Wikipedia:Umbilical_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0010260 ! umbilical blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI property_value: editor_note "todo - compare with EHDAA2. Check embryonic vs extraembryonic, developmental relationships" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/328" xsd:anyURI [Term] id: UBERON:0001311 name: inferior vesical artery def: "An artery that supplies blood to the lower urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: uberon_slim synonym: "arteria vesicali inferior" EXACT OMO:0003011 [Wikipedia:Inferior_vesical_artery] synonym: "arteria vesicalis inferior" EXACT OMO:0003011 [Wikipedia:Inferior_vesical_artery] synonym: "arteria vesicalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_vesical_artery] xref: EMAPA:37089 {source="MA:th"} xref: FMA:18823 xref: MA:0002079 xref: NCIT:C52685 xref: SCTID:43210002 xref: UMLS:C0226377 {source="ncithesaurus:Inferior_Vesical_Artery"} xref: Wikipedia:Inferior_vesical_artery is_a: UBERON:0009027 ! vesical artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png" xsd:anyURI [Term] id: UBERON:0001312 name: superior vesical artery def: "An artery that supplies blood to the upper urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: uberon_slim synonym: "arteria vesicali superior" EXACT OMO:0003011 [Wikipedia:Superior_vesical_artery] synonym: "arteria vesicalis superior" EXACT OMO:0003011 [Wikipedia:Superior_vesical_artery] synonym: "arteriae vesicales superiores" RELATED OMO:0003011 [Wikipedia:Superior_vesical_artery] xref: EMAPA:37123 {source="MA:th"} xref: FMA:18839 xref: MA:0002080 xref: NCIT:C52686 xref: SCTID:113268007 xref: UMLS:C0226376 {source="ncithesaurus:Superior_Vesical_Artery"} xref: Wikipedia:Superior_vesical_artery is_a: UBERON:0003468 ! ureteric segment of renal artery is_a: UBERON:0009027 ! vesical artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/0/02/Internal_iliac_branches.PNG" xsd:anyURI property_value: development_notes "The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery (fetal hypogastric artery)[WP]" xsd:string [Term] id: UBERON:0001313 name: iliolumbar artery def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [Wikipedia:Iliolumbar_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria iliolumbalis" RELATED OMO:0003011 [Wikipedia:Iliolumbar_artery] synonym: "ilio-lumbar artery" EXACT [] xref: EMAPA:37085 {source="MA:th"} xref: FMA:18845 xref: MA:0001976 xref: NCIT:C52859 xref: SCTID:113267002 xref: UMLS:C0226367 {source="ncithesaurus:Iliolumbar_Artery"} xref: Wikipedia:Iliolumbar_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI [Term] id: UBERON:0001314 name: obturator artery def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [Wikipedia:Obturator_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria obturatoria" RELATED OMO:0003011 [Wikipedia:Obturator_artery] xref: EMAPA:37671 {source="MA:th"} xref: FMA:18865 xref: MA:0002008 xref: NCIT:C33190 xref: SCTID:244302006 xref: UMLS:C0226369 {source="ncithesaurus:Obturator_Artery"} xref: Wikipedia:Obturator_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png" xsd:anyURI [Term] id: UBERON:0001315 name: superior gluteal artery def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [Wikipedia:Superior_gluteal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria glutea superior" RELATED OMO:0003011 [Wikipedia:Superior_gluteal_artery] synonym: "arteria glutealis superior" EXACT [] xref: EMAPA:37120 {source="MA:th"} xref: FMA:18868 xref: MA:0002054 xref: NCIT:C32688 xref: SCTID:181354004 xref: UMLS:C0226371 {source="ncithesaurus:Gluteal_Artery"} xref: Wikipedia:Superior_gluteal_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png" xsd:anyURI [Term] id: UBERON:0001316 name: external iliac vein def: "A large vein that connects the femoral vein to the common iliac vein. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,modified]." [Wikipedia:External_iliac_vein] subset: human_reference_atlas subset: uberon_slim synonym: "vena iliaca externa" RELATED OMO:0003011 [Wikipedia:External_iliac_vein] xref: EHDAA2:0000464 xref: EMAPA:37144 {source="MA:th"} xref: FMA:18883 xref: galen:ExternalIliacVein xref: MA:0002144 xref: NCIT:C32560 xref: SCTID:181400000 xref: UMLS:C0226761 {source="ncithesaurus:External_Iliac_Vein"} xref: Wikipedia:External_iliac_vein is_a: UBERON:0005610 {source="MA"} ! iliac vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif" xsd:anyURI [Term] id: UBERON:0001317 name: internal iliac vein def: "A vein that begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [Wikipedia:Internal_iliac_vein] subset: human_reference_atlas subset: uberon_slim synonym: "hypogastric vein" RELATED [MA:0002139, Wikipedia:Internal_iliac_vein] synonym: "v. hypogastrica" RELATED OMO:0003011 [Wikipedia:Internal_iliac_vein] synonym: "v. iliaca interna" RELATED OMO:0003011 [Wikipedia:Internal_iliac_vein] xref: EHDAA2:0000874 xref: EMAPA:37148 {source="MA:th"} xref: FMA:18884 xref: galen:InternalIliacVein xref: MA:0002139 xref: MA:0002145 xref: NCIT:C32847 xref: SCTID:181399007 xref: UMLS:C0226764 {source="ncithesaurus:Internal_Iliac_Vein"} xref: VHOG:0000749 xref: Wikipedia:Internal_iliac_vein is_a: UBERON:0005610 {source="MA"} ! iliac vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001318 name: inferior vesical vein subset: human_reference_atlas xref: EMAPA:37158 {source="MA:th"} xref: FMA:18890 xref: MA:0002264 is_a: UBERON:0002460 {is_inferred="true", source="MA"} ! vesical vein relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "inferred from artery" xsd:string [Term] id: UBERON:0001319 name: vaginal vein def: "One the veins that drains the vaginal venous plexus, into the hypogastric veins. [WP,modified]." [Wikipedia:Vaginal_venous_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "vagina vein" EXACT [OBOL:automatic] synonym: "vein of vagina" EXACT [OBOL:automatic] xref: EMAPA:37796 {source="MA:th"} xref: FMA:18899 xref: MA:0002251 xref: SCTID:424336009 is_a: UBERON:0001638 ! vein is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000996 ! vagina relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png" xsd:anyURI [Term] id: UBERON:0001320 name: iliolumbar vein def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [Wikipedia:Iliolumbar_vein] subset: human_reference_atlas subset: uberon_slim synonym: "ilio-lumbar vein" EXACT [] synonym: "vena iliolumbalis" RELATED OMO:0003011 [Wikipedia:Iliolumbar_vein] xref: EMAPA:37152 {source="MA:th"} xref: FMA:18902 xref: MA:0002146 xref: NCIT:C53048 xref: SCTID:286793006 xref: UMLS:C0226760 {source="ncithesaurus:Iliolumbar_Vein"} xref: Wikipedia:Iliolumbar_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI [Term] id: UBERON:0001321 name: obturator vein def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [Wikipedia:Obturator_veins] subset: human_reference_atlas subset: uberon_slim xref: EMAPA:37677 {source="MA:th"} xref: FMA:18914 xref: MA:0002183 xref: NCIT:C53056 xref: SCTID:20146009 xref: UMLS:C0226776 {source="ncithesaurus:Obturator_Vein"} xref: Wikipedia:Obturator_veins is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI [Term] id: UBERON:0001322 name: sciatic nerve def: "A large nerve that supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. It begins in the lower back and runs through the buttock and down the lower limb." [Wikipedia:Sciatic_nerve] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ischiadic nerve" RELATED [Wikipedia:Sciatic_nerve] synonym: "ischiatic nerve" RELATED [Wikipedia:Sciatic_nerve] synonym: "nervus ischiadicus" RELATED OMO:0003011 [BTO:0001221, Wikipedia:Sciatic_nerve] synonym: "nervus sciaticus" RELATED [BTO:0001221] xref: BIRNLEX:1133 xref: BTO:0001221 xref: CALOHA:TS-0899 xref: EFO:0001417 xref: EHDAA2:0001779 xref: EHDAA:5659 xref: EMAPA:18577 xref: FMA:19034 xref: GAID:852 xref: MA:0001172 xref: MESH:D012584 xref: NCIT:C52810 xref: SCTID:181050003 xref: UMLS:C0036394 {source="BIRNLEX:1133", source="ncithesaurus:Sciatic_Nerve"} xref: VHOG:0000894 xref: Wikipedia:Sciatic_nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png" xsd:anyURI property_value: taxon_notes "mouse sciatic nerve origins predominantly from the third lumbar (L3) and L4 spinal nerves, unlike the L4 and L5 in rats - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/" xsd:string [Term] id: UBERON:0001323 name: tibial nerve def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [Wikipedia:Tibial_nerve] subset: uberon_slim synonym: "medial popliteal nerve" EXACT [] synonym: "n. tibialis" RELATED OMO:0003011 [Wikipedia:Tibial_nerve] xref: EMAPA:36512 xref: FMA:19035 xref: GAID:854 xref: MA:0001173 xref: MESH:D013979 xref: NCIT:C52809 xref: SCTID:181078002 xref: UMLS:C0040186 {source="ncithesaurus:Tibial_Nerve"} xref: Wikipedia:Tibial_nerve is_a: UBERON:0003431 ! leg nerve property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png" xsd:anyURI [Term] id: UBERON:0001324 name: common fibular nerve def: "A nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]." [MP:0011211] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "common peroneal nerve" EXACT [] synonym: "extrernal peroneal nerve" EXACT [MP:0011211] synonym: "lateral popliteal nerve" EXACT [MP:0011211] synonym: "n. fibularis communis" RELATED OMO:0003011 [Wikipedia:Common_fibular_nerve] synonym: "n. peroneus communis" RELATED OMO:0003011 [Wikipedia:Common_fibular_nerve] synonym: "nervus fibularis communis" RELATED OMO:0003011 [] synonym: "nervus peroneus communis" EXACT OMO:0003011 [FMA:19039, FMA:TA] xref: EFO:0003062 xref: FMA:19039 xref: GAID:853 xref: MA:0001169 xref: MESH:D010543 xref: NCIT:C52814 xref: SCTID:181077007 xref: UMLS:C0031173 {source="ncithesaurus:Peroneal_Nerve"} xref: Wikipedia:Common_fibular_nerve is_a: UBERON:0003431 ! leg nerve is_a: UBERON:0035652 ! fibular nerve property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray832.png" xsd:anyURI property_value: structure_notes "derives into deep and superficial branches" xsd:string [Term] id: UBERON:0001325 name: muscle of pelvis def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani,." [FMA:19086] subset: pheno_slim subset: uberon_slim synonym: "muscle organ of pelvis" EXACT [OBOL:automatic] synonym: "pelvic muscle" EXACT [FMA:19086] synonym: "pelvis muscle" EXACT [] synonym: "pelvis muscle organ" EXACT [OBOL:automatic] xref: EMAPA:37481 {source="MA:th"} xref: FMA:19086 xref: MA:0000534 is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle is_a: UBERON:0005179 ! pelvic region element [Term] id: UBERON:0001326 name: levator ani muscle def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [Wikipedia:Levator_ani] subset: uberon_slim synonym: "levator ani" EXACT [MA:0002332] synonym: "musculus levator ani" EXACT OMO:0003011 [Wikipedia:Levator_ani] xref: EMAPA:19165 xref: FMA:19087 xref: MA:0002332 xref: NCIT:C32984 xref: SCTID:181753008 xref: UMLS:C0224384 {source="ncithesaurus:Levator_Ani"} xref: Wikipedia:Levator_ani is_a: UBERON:0001325 ! muscle of pelvis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png" xsd:anyURI property_value: taxon_notes "the levator ani muscle acts to lower the tail, in animals that have one" xsd:string [Term] id: UBERON:0001327 name: coccygeus muscle def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [Wikipedia:Coccygeus_muscle] subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "coccygeus" EXACT [MA:0002277] synonym: "ischiococcygeus" EXACT [] synonym: "musculus coccygeus" RELATED OMO:0003011 [Wikipedia:Coccygeus_muscle] synonym: "musculus ischiococcygeus" EXACT OMO:0003011 [FMA:19088, FMA:TA] xref: EMAPA:37482 {source="MA:th"} xref: FMA:19088 xref: MA:0002277 xref: Wikipedia:Coccygeus_muscle is_a: UBERON:0001325 ! muscle of pelvis is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png" xsd:anyURI [Term] id: UBERON:0001328 name: lobe of prostate def: "A portion of a prostate that forms a lobe." [https://github.com/obophenotype/uberon/issues/665] synonym: "lobe of prostate gland" EXACT [] synonym: "prostate gland lobe" EXACT [] synonym: "prostatic lobe" EXACT [] xref: BTO:0000548 xref: EMAPA:35712 xref: FMA:19570 xref: MA:0001738 xref: NCIT:C52726 xref: SCTID:279692004 xref: UMLS:C0227970 {source="ncithesaurus:Prostate_Gland_Lobe"} is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0009912 ! anatomical lobe relationship: part_of UBERON:0002367 ! prostate gland property_value: taxon_notes "Anatomically, the human prostate gland is located between the base of the bladder and the rectum, and it completely surrounds the proximal urethra (Fig. 1A). It is a single alobular structure with central (CZ), peripheral (PZ) and transitional (TZ) zones. In contrast, the mouse prostate is not merged into one compact anatomical structure. It comprises four paired lobes situated circumferentially around the urethra, immediately caudal to the urinary bladder-namely, anterior (AP), dorsal (DP), lateral (LP), and ventral (VP) prostate (Fig. 1B). Often, the dorsal and the lateral lobes are thought of in combination and referred to as the dorsolateral (DLP) lobe as they share a ductal system. The mouse AP is considered analogous to the human CZ, which is rarely a site of neoplastic transformation in humans. The mouse DLP is considered most similar to the human PZ, which is the zone in which most carcinomas arise (Xue et al. 1997). These analogies, however, are limited as they are based solely on descriptive data and need to be re-evaluated using molecular techniques before the relationship between specific mouse prostate lobes and the human prostate zones is definitively asserted (Abate-Shen & Shen 2000). The mouse VP does not have a human homologue, and the human TZ does not have a murine homologue" xsd:string {source="PMID:15163300", source="https://github.com/obophenotype/uberon/issues/665"} [Term] id: UBERON:0001329 name: prostate gland anterior lobe subset: pheno_slim synonym: "anterior lobe of prostate" EXACT [FMA:19574] synonym: "anterior lobe of prostate gland" EXACT [] synonym: "anterior prostate" RELATED [] synonym: "anterior prostate gland" EXACT [EMAPA:29794] synonym: "commissura prostatae" EXACT OMO:0003011 [FMA:19574, FMA:TA] synonym: "commissure of prostate" EXACT [] synonym: "isthmus of prostate" EXACT [] synonym: "isthmus of prostate gland" EXACT [] synonym: "isthmus prostatae" EXACT OMO:0003011 [FMA:19574, FMA:TA] synonym: "prostate gland anterior lobe" EXACT [] synonym: "prostatic isthmus" EXACT [] xref: BTO:0003158 xref: FMA:19574 xref: MA:0002422 xref: SCTID:279693009 is_a: UBERON:0001328 ! lobe of prostate property_value: editor_note "consider splitting and having distinct classes for mouse coagulating gland and human anterior prostate. See https://github.com/obophenotype/uberon/issues/665" xsd:string property_value: editor_note "TODO - check - see comments from http://www.ncbi.nlm.nih.gov/pubmed/15163300" xsd:string [Term] id: UBERON:0001330 name: pampiniform plexus def: "The pampiniform plexus is a network of many small veins found in the male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [Wikipedia:Pampiniform_venous_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "pampiniform venous plexus" EXACT [] synonym: "plexus of veins of fascia of prostate" EXACT [] synonym: "plexus venosus pampiniformis" EXACT OMO:0003011 [FMA:19607, FMA:TA] synonym: "venous plexus of fascia of prostate" EXACT [] synonym: "venous plexus of fascia of prostate gland" EXACT [] xref: EMAPA:37385 {source="MA:th"} xref: FMA:19607 xref: MA:0001866 xref: SCTID:279661001 xref: Wikipedia:Pampiniform_venous_plexus is_a: UBERON:0001593 ! venous plexus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray1147.png" xsd:anyURI [Term] id: UBERON:0001331 name: skin of penis def: "A zone of skin that is part of a penis [Automatically generated definition]." [OBOL:automatic] synonym: "penile skin" EXACT [FMA:19638] synonym: "penis skin" EXACT [] synonym: "penis zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of penis" EXACT [OBOL:automatic] xref: EMAPA:35675 xref: FMA:19638 xref: MA:0002727 xref: SCTID:35900000 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0001332 name: prepuce of penis def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Foreskin] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "foreskin" RELATED [FMA:19639] synonym: "penile prepuce" EXACT [FMA:19639] synonym: "praeputium" RELATED OMO:0003011 [Wikipedia:Foreskin] synonym: "prepuce" BROAD [MA:0000407, Wikipedia:Foreskin] synonym: "prepuce of male" EXACT [EMAPA:18989] synonym: "prepucium" RELATED OMO:0003011 [Wikipedia:Foreskin] synonym: "preputium" BROAD [HP:0100587] synonym: "preputium penis" EXACT OMO:0003011 [FMA:19639, FMA:TA] xref: BTO:0001113 xref: CALOHA:TS-0383 xref: EFO:0001664 xref: EMAPA:18989 xref: FMA:19639 xref: MA:0000407 xref: NCIT:C33049 xref: SCTID:181426005 xref: UMLS:C0227952 {source="ncithesaurus:Male_Prepuce"} xref: Wikipedia:Foreskin is_a: UBERON:0011374 ! prepuce relationship: part_of UBERON:0000989 ! penis relationship: transformation_of UBERON:0035005 ! preputial swelling of male property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/e6/Foreskin_CloseupV2.jpg" xsd:anyURI [Term] id: UBERON:0001333 name: male urethra def: "A urethra that is part of a male reproductive system." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim xref: BTO:0004089 xref: EMAPA:18692 xref: FMA:19668 xref: MA:0002640 xref: NCIT:C33050 xref: SCTID:264085007 xref: UMLS:C0458452 {source="ncithesaurus:Male_Urethra"} xref: Wikipedia:Male_urethra is_a: UBERON:0000057 ! urethra relationship: part_of UBERON:0003101 ! male organism property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI [Term] id: UBERON:0001334 name: female urethra def: "A urethra that is part of a female reproductive system." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "urethra feminina" RELATED [BTO:0004088] synonym: "urethra muliebris" RELATED [BTO:0004088] xref: BTO:0004088 xref: EMAPA:28747 xref: FMA:19669 xref: MA:0002637 xref: NCIT:C32591 xref: SCTID:264469008 xref: UMLS:C0458485 {source="ncithesaurus:Female_Urethra"} xref: Wikipedia:Female_urethra is_a: UBERON:0000057 ! urethra relationship: part_of UBERON:0003100 ! female organism property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI [Term] id: UBERON:0001335 name: prostatic urethra def: "The widest and most dilatable part of the male urethra canal which runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; this portion of the urethral canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion; it is lined by transitional epithelium and contains in its posterior wall, or floor, the orifices of the prostatic utricle, ejaculatory ducts, and prostatic ducts, collectively known as the seminal colliculus (aka verumontanum)." [MGI:anna, MP:0011777] subset: pheno_slim subset: uberon_slim synonym: "male prostatic urethra" EXACT [MP:0011777] synonym: "pars prostatica urethrae" EXACT OMO:0003011 [MP:0011777, Wikipedia:Prostatic_urethra] synonym: "pars prostatica urethrae" RELATED [BTO:0003163] synonym: "prostatic part of male urethra" EXACT [MP:0011777] synonym: "prostatic part of urethra" EXACT [] xref: BTO:0003163 xref: EMAPA:30942 xref: FMA:19673 xref: MA:0002646 xref: NCIT:C13101 xref: SCTID:279434009 xref: UMLS:C0458450 {source="ncithesaurus:Prostatic_Portion_of_the_Male_Urethra"} xref: Wikipedia:Prostatic_urethra is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001333 {source="FMA", source="MA"} ! male urethra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png" xsd:anyURI [Term] id: UBERON:0001336 name: membranous urethra of male or female subset: uberon_slim synonym: "intermediate part of urethra" EXACT [] synonym: "intermediate urethra" EXACT [] synonym: "membranous part of urethra" EXACT [] synonym: "membranous urethra" EXACT INCONSISTENT [MA:0002647] synonym: "pars intermedia urethrae" EXACT OMO:0003011 [FMA:19674, FMA:TA] synonym: "pars membranacea (urethrae)" EXACT [] xref: EMAPA:37542 {source="MA:th"} xref: MA:0002647 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000057 ! urethra property_value: external_ontology_notes "MA class sex-neutral" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001337 name: spongiose part of urethra def: "The longest part of the male urethra contained in the corpus spongiosum and extending from the end of the membranous portion to the external urethral orifice; commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward; while narrow and of uniform size in the body of the penis, it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae; the spongy urethra is lined by pseudostratified columnar epithelium proximally, and by stratified squamous epithelium distally." [MGI:anna, MP:0011779] subset: pheno_slim subset: uberon_slim synonym: "cavernous portion of male urethra" EXACT [MP:0011779] synonym: "male spongiose urethra" EXACT [MP:0011779] synonym: "male spongy urethra" EXACT [] synonym: "pars cavernosa urethrae" EXACT [MP:0011779] synonym: "pars spongiosa" EXACT OMO:0003011 [FMA:19675, FMA:TA] synonym: "pars spongiosa (urethra masculina)" EXACT OMO:0003011 [FMA:19675, FMA:TA] synonym: "pars spongiosa urethrae masculinae" EXACT [MP:0011779] synonym: "penile urethra" EXACT [MP:0011779] synonym: "spongiose urethra" EXACT [MP:0011779] synonym: "spongy urethra (male)" EXACT [] xref: EMAPA:30944 xref: FMA:19675 xref: MA:0002644 xref: SCTID:263341006 xref: Wikipedia:Penile_urethra is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000989 {source="FMA"} ! penis relationship: part_of UBERON:0001333 {source="FMA"} ! male urethra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png" xsd:anyURI [Term] id: UBERON:0001338 name: urethral gland def: "Any of the numerous small mucous-secreting glands located in the wall of the male or female urethra that help protect the epithelium from the corrosive urine." [MP:anna] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "gland of urethra" EXACT [OBOL:automatic] synonym: "urethra gland" EXACT [] synonym: "urethra gland (male or female)" EXACT [] synonym: "urethral mucuous gland" EXACT [] xref: EMAPA:37784 {source="MA:th"} xref: FMA:19683 xref: MA:0001688 xref: SCTID:279477005 is_a: UBERON:0000414 {source="MP"} ! mucous gland relationship: part_of UBERON:0000057 ! urethra property_value: external_ontology_notes "NCIT:C12339 paraurethral gland belongs here" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0001339 name: ischiocavernosus muscle def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [Wikipedia:Ischiocavernosus_muscle] subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "erector penis" RELATED [Wikipedia:Ischiocavernosus_muscle] synonym: "ischiocavernosi" RELATED [Wikipedia:Ischiocavernosus_muscle] synonym: "ischiocavernosus" RELATED [Wikipedia:Ischiocavernosus_muscle] synonym: "ischiocavernous muscle" RELATED [Wikipedia:Ischiocavernosus_muscle] synonym: "ishiocavernosus" RELATED [Wikipedia:Ischiocavernosus_muscle] synonym: "ishiocavernosus muscle" RELATED [Wikipedia:Ischiocavernosus_muscle] synonym: "musculus ishiocavernosus" EXACT OMO:0003011 [Wikipedia:Ischiocavernosus_muscle] xref: EMAPA:37455 {source="MA:th"} xref: FMA:19730 xref: MA:0002330 xref: NCIT:C52946 xref: SCTID:244975004 xref: UMLS:C0224401 {source="ncithesaurus:Ischiocavernosus"} xref: Wikipedia:Ischiocavernosus_muscle is_a: UBERON:0002379 ! perineal muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Ischiocavernosus-female.png" xsd:anyURI [Term] id: UBERON:0001340 name: dorsal artery of penis def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [Wikipedia:Dorsal_artery_of_penis] subset: human_reference_atlas subset: uberon_slim synonym: "arteria dorsalis penis" EXACT [BTO:0005088] synonym: "dorsal artery of the penis" RELATED [BTO:0005088] synonym: "dorsal penile artery" EXACT [FMA:19795] synonym: "dorsal penis artery" EXACT [MA:0001946] xref: BTO:0005088 xref: EMAPA:37080 {source="MA:th"} xref: FMA:19795 xref: MA:0001946 xref: SCTID:244294001 xref: Wikipedia:Dorsal_artery_of_penis is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png" xsd:anyURI [Term] id: UBERON:0001341 name: lesser sac def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). [WP,unvetted]." [Wikipedia:Lesser_sac] subset: uberon_slim synonym: "bursa omentalis" EXACT OMO:0003011 [FMA:19800, FMA:TA] synonym: "omental bursa" EXACT [] xref: EHDAA2:0001296 xref: EHDAA2:0004554 xref: EHDAA:2335 xref: EMAPA:16889 xref: FMA:19800 xref: MA:0000445 xref: NCIT:C81014 xref: UMLS:C0230212 {source="ncithesaurus:Omental_Bursa"} xref: VHOG:0000458 xref: Wikipedia:Lesser_sac is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0035820 ! peritoneal sac property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c5/Peritoneum.svg" xsd:anyURI property_value: development_notes "The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach" xsd:string property_value: external_definition "The lesser sac of the peritoneum. Part of the peritoneal cavity behind the liver, lesser omentum and stomach. It lies across the transverse mesocolon and extends into the greater omentum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000458", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_ontology_notes "classified as a cavity in EHDAA2, so this truly corresponds to FMA 'Cavity of lesser sac' - we hedge for now; todo - treat same as greater sac" xsd:string {external_ontology="EHDAA2"} property_value: taxon_notes "In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac" xsd:string [Term] id: UBERON:0001342 name: mesovarium def: "The mesentery that suspends the ovary from the dorsal wall of the coelom[VHOG]." [VHOG:0001566, Wikipedia:Mesovarium] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "mesovarian ligament" RELATED [] xref: AAO:0010531 xref: EMAPA:17961 xref: FMA:19815 xref: MA:0003236 xref: NCIT:C92440 xref: SCTID:279914000 xref: TAO:0000333 xref: UMLS:C0230310 {source="ncithesaurus:Mesovarian_Ligament"} xref: VHOG:0001566 xref: Wikipedia:Mesovarium xref: ZFA:0000333 is_a: UBERON:0002095 ! mesentery is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! ovary relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray1111.png" xsd:anyURI property_value: external_definition "Anatomical structure consisting of a membrane which suspends the ovaries from the mesial side of the kidney.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010531", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The mesentery that suspends the ovary from the dorsal wall of the coelom. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.560, see_Kardong_KV][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001566", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001343 name: seminiferous tubule of testis def: "The tubules in the testes where spermatogenesis occurs." [https://github.com/obophenotype/uberon/issues/1381, ISBN:0-683-40008-8, MGI:csmith, MP:0002216] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "seminiferous cord" EXACT [EMAPA:18685] synonym: "seminiferous tubule" EXACT [] synonym: "testis - seminiferous tubule" EXACT [] synonym: "tubuli seminiferi" EXACT [] synonym: "tubuli seminiferi" RELATED OMO:0003011 [Wikipedia:Seminiferous_tubule] xref: AAO:0010399 xref: BTO:0001235 xref: CALOHA:TS-1239 xref: EFO:0001404 xref: EMAPA:18685 xref: EMAPA:31476 xref: EV:0100380 xref: FMA:19825 xref: GAID:400 xref: MA:0000412 xref: MAT:0000503 xref: MESH:D012671 xref: NCIT:C13047 xref: NCIT:C34293 xref: SCTID:279614002 xref: UMLS:C0036630 {source="ncithesaurus:Seminiferous_Tubule"} xref: UMLS:C1519236 {source="ncithesaurus:Seminiferous_Cord"} xref: VHOG:0001363 xref: Wikipedia:Seminiferous_tubule xref: XAO:0003088 is_a: UBERON:0000025 ! tube is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system relationship: develops_from UBERON:0005297 {source="Wikipedia"} ! testis sex cord relationship: part_of UBERON:0000473 ! testis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/49/Seminiferous_tubule_and_sperm_low_mag.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6a/Gray1145.png" xsd:anyURI property_value: external_definition "Any of the coiled tubules located in the testes in which spermatozoa are produced.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010399", ontology="AAO", source="AAO:BJB"} property_value: external_definition "One of two or three twisted curved tubules in each lobule of the testis in which spermatogenesis occurs. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001363", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/SEMINIFEROUS+TUBULE"} property_value: homology_notes "Frogs among amphibians and the amniotes have males with testes that are composed of seminiferous tubules, which differ from ampullae in being long, highly convoluted ductules.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001363", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.688 and Figure 21-28", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001344 name: epithelium of vagina def: "The epithelial layer of the vagina." [MP:0001140] subset: pheno_slim synonym: "epithelial tissue of vagina" EXACT [OBOL:automatic] synonym: "epithelium, vaginal" RELATED [BTO:0000422] synonym: "vagina epithelial tissue" EXACT [OBOL:automatic] synonym: "vagina epithelium" EXACT [] synonym: "vaginal epithelium" EXACT [] xref: BTO:0000422 xref: CALOHA:TS-1325 xref: EMAPA:30991 xref: FMA:19978 xref: MA:0001730 xref: NCIT:C49313 xref: UMLS:C0920840 {source="ncithesaurus:Vaginal_Epithelium"} is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0004804 ! oviduct epithelium relationship: part_of UBERON:0000996 ! vagina property_value: external_ontology_notes "FMA: nonkeratinizing stratified squamous epithelium; BTO: Vaginal epithelium is stratified squamous epithelium having a thickness of 15-200 microns; MA has single subclass (squamous)" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001345 name: obsolete fornix subset: uberon_slim xref: Wikipedia:Vaginal_fornix_of_brain is_obsolete: true consider: UBERON:0000051 consider: UBERON:0000052 [Term] id: UBERON:0001346 name: vaginal hymen def: "A membrane that surrounds or partially covers the vaginal opening." [Wikipedia:Hymen] subset: pheno_slim synonym: "hymen" BROAD [MESH:A05.360.319.779.479] synonym: "hymen of vagina" EXACT [FMA:20005] synonym: "hymen vaginae" EXACT [] synonym: "hymen vaginae" RELATED OMO:0003011 [Wikipedia:Hymen] synonym: "vaginal corona" RELATED [Wikipedia:Hymen] xref: EMAPA:37795 {source="MA:th"} xref: FMA:20005 xref: MA:0002465 xref: MESH:D006924 xref: NCIT:C32750 xref: SCTID:245473005 xref: UMLS:C0020412 {source="ncithesaurus:Hymen"} xref: Wikipedia:Hymen is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000996 {source="FMA"} ! vagina property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png" xsd:anyURI [Term] id: UBERON:0001347 name: white adipose tissue def: "Connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels[MP,modified]." [ISBN:0-683-40008-8, MP:0005670] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "adipocytus unigutturalis" EXACT [] synonym: "textus adiposus albus" EXACT [] synonym: "textus adiposus albus" RELATED OMO:0003011 [Wikipedia:White_adipose_tissue] synonym: "unilocular adipose tissue" EXACT [] synonym: "white fat" EXACT [] xref: BTO:0001456 xref: CALOHA:TS-1119 xref: EFO:0000813 xref: EMAPA:35926 xref: FMA:20117 xref: MA:0000058 xref: MAT:0000199 xref: MESH:D052436 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000199 xref: NCIT:C33889 xref: UMLS:C1704223 {source="ncithesaurus:White_Adipose_Tissue"} xref: Wikipedia:White_adipose_tissue is_a: UBERON:0001013 ! adipose tissue property_value: external_definition "Adipose tissue, cells of which contain a single large lipid droplet." xsd:string {source="FMA"} [Term] id: UBERON:0001348 name: brown adipose tissue def: "A thermogenic form of adipose tissue that is composed of brown adipocytes[MP,modified]." [MGI:smb, MP:0011698] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "adipocytus multigutturalis" EXACT [] synonym: "BAT" RELATED OMO:0003000 [Wikipedia:Brown_adipose_tissue] synonym: "brown fat" EXACT [] synonym: "multilocular adipose tissue" EXACT [] synonym: "textus adiposus fuscus" EXACT [] synonym: "textus adiposus fuscus" RELATED OMO:0003011 [Wikipedia:Brown_adipose_tissue] xref: BTO:0000156 xref: CALOHA:TS-0099 xref: EFO:0000812 xref: EMAPA:19209 xref: FMA:20118 xref: GAID:921 xref: MA:0000057 xref: MAT:0000198 xref: MESH:D002001 xref: MIAA:0000198 xref: NCIT:C32235 xref: SCTID:15965003 xref: UMLS:C0006298 {source="ncithesaurus:Brown_Adipose_Tissue"} xref: Wikipedia:Brown_adipose_tissue is_a: UBERON:0001013 ! adipose tissue property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Brownfat_PETCT.jpg" xsd:anyURI property_value: external_definition "Adipose tissue, cells of which contain multiple small lipid droplets.[FMA]" xsd:string {source="FMA"} property_value: function_notes "thermogenesis" xsd:string property_value: taxon_notes "especially abundant in newborns and in hibernating mammals" xsd:string [Term] id: UBERON:0001349 name: externally connecting tube lumen def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA]." [FMA:20192] subset: non_informative synonym: "vestibule" RELATED [FMA:20192] xref: FMA:20192 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0001350 name: coccyx def: "A collection of caudal vertebrae in the coccygeal region that are fused and part of the bony pelvis." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "coccygeal skeleton" EXACT [EHDAA2:0000259] synonym: "coccygeal vertebrae I-IV" EXACT [FMA:20229] synonym: "coccyx [coccygeal vertebrae I-IV]" EXACT [FMA:20229] synonym: "coccyx [vertebrae coccygeae I-IV]" EXACT OMO:0003011 [FMA:20229, FMA:TA] synonym: "fused caudal vertebrae" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "fused caudal vertebral column" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "os coccygis" EXACT OMO:0003011 [FMA:20229, FMA:TA] synonym: "os coccygis" RELATED OMO:0003011 [Wikipedia:Coccyx] synonym: "tailbone" RELATED SENSU [FMA:20229] xref: AAO:0000731 xref: EHDAA2:0000259 xref: FMA:20229 xref: GAID:239 xref: galen:Coccyx xref: MESH:D003050 xref: NCIT:C12696 xref: SCTID:182028002 xref: UMLS:C0009194 {source="ncithesaurus:Coccyx"} xref: Wikipedia:Coccyx is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0006076 ! caudal region of vertebral column is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: develops_from UBERON:0007144 ! embryonic post-anal tail relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Small, bony element consisting of several fused, rudimentary caudal vertebrae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000731", ontology="AAO", source="AAO:Pugener_2002", source="AAO:Pugener_and_Maglia_2008"} property_value: has_relational_adjective "coccygeal" xsd:string property_value: taxon_notes "In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx." xsd:string {source="WP,unvetted"} [Term] id: UBERON:0001351 name: lacrimal sac def: "The upper dilated end of the nasolacrimal duct that is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla; it connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity; like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue." [MGI:anna] subset: pheno_slim subset: uberon_slim synonym: "lachrymal sac" EXACT [] synonym: "lacrymal sac" EXACT [] synonym: "saccus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_sac] xref: FMA:20289 xref: MA:0001298 xref: NCIT:C32909 xref: SCTID:362534009 xref: UMLS:C0229289 {source="ncithesaurus:Lacrimal_Sac"} xref: Wikipedia:Lacrimal_sac is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002392 ! nasolacrimal duct property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png" xsd:anyURI [Term] id: UBERON:0001352 name: external acoustic meatus def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus] subset: pheno_slim subset: uberon_slim synonym: "auditory canal" EXACT [] synonym: "auditory meatus" RELATED [EHDAA2:0000460] synonym: "ear canal" EXACT [Wikipedia:Ear_canal] synonym: "external acoustic tube" EXACT [FMA:61734] synonym: "external auditory canal" EXACT [] synonym: "external auditory meatus" RELATED [] synonym: "external auditory tube" EXACT [FMA:61734] xref: EHDAA2:0000460 xref: EHDAA:8975 xref: EMAPA:17588 xref: EV:0100356 xref: FMA:61734 xref: GAID:864 xref: galen:ExternalAuditoryMeatus xref: MA:0000260 xref: MESH:D004424 xref: NCIT:C12498 xref: SCTID:181178004 xref: UMLS:C0013444 {source="ncithesaurus:External_Acoustic_Meatus"} xref: VHOG:0000977 xref: Wikipedia:External_acoustic_meatus is_a: UBERON:0004111 ! anatomical conduit relationship: develops_from UBERON:0005872 {source="PMID:11237469"} ! 1st arch pharyngeal cleft relationship: part_of UBERON:0001691 {source="FMA"} ! external ear property_value: development_notes "tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469]" xsd:string property_value: editor_note "consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct." xsd:string property_value: external_ontology_notes "subdivision of head in FMA." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001353 name: anal region def: "The anus and surrounding regions. Encompasses both internal and external regions, where present." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "posterior" RELATED [] synonym: "posterior end of organism" RELATED [] xref: EFO:0000847 xref: EHDAA2:0000122 xref: EHDAA:2931 xref: EMAPA:16831 xref: MA:0000329 xref: MAT:0000042 xref: MIAA:0000042 xref: NCIT:C32069 xref: SCTID:362680001 xref: UMLS:C0230120 {source="ncithesaurus:Anal_Region"} xref: VHOG:0000395 xref: WBbt:0006919 is_a: UBERON:0000475 ! organism subdivision property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png" xsd:anyURI property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000395", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/507" xsd:anyURI [Term] id: UBERON:0001354 name: inferior epigastric artery def: "The artery that arises from the external iliac artery and anastomoses with the superior epigastric artery." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Inferior_epigastric_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria epigastrica inferior" RELATED OMO:0003011 [Wikipedia:Inferior_epigastric_artery] xref: EMAPA:18751 xref: FMA:20686 xref: MA:0001978 xref: NCIT:C52861 xref: SCTID:244288009 xref: UMLS:C0226401 {source="ncithesaurus:Inferior_Epigastric_Artery"} xref: Wikipedia:Inferior_epigastric_artery is_a: UBERON:0006349 ! epigastric artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png" xsd:anyURI [Term] id: UBERON:0001355 name: deep femoral artery def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [Wikipedia:Deep_femoral_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria profunda femoris" EXACT [] synonym: "profunda femoris artery" EXACT [] xref: EMAPA:37216 {source="MA:th"} xref: FMA:20741 xref: MA:0002027 xref: NCIT:C32436 xref: SCTID:181348000 xref: UMLS:C0226455 {source="ncithesaurus:Deep_Femoral_Artery"} xref: Wikipedia:Deep_femoral_artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0035551 ! deep vasculature relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png" xsd:anyURI [Term] id: UBERON:0001356 name: medial circumflex femoral artery def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [Wikipedia:Medial_circumflex_femoral_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria circumflexa femoris medialis" RELATED OMO:0003011 [Wikipedia:Medial_circumflex_femoral_artery] synonym: "medial femoral circumflex artery" EXACT [] xref: EMAPA:37670 {source="MA:th"} xref: FMA:20799 xref: MA:0001996 xref: SCTID:244326008 xref: Wikipedia:Medial_circumflex_femoral_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png" xsd:anyURI [Term] id: UBERON:0001357 name: inferior rectal artery def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [Wikipedia:Inferior_rectal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria haemorrhoidalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_rectal_artery] synonym: "arteria rectalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_rectal_artery] synonym: "inferior haemorrhoidal artery" RELATED [Wikipedia:Inferior_rectal_artery] synonym: "inferior hemorrhoidal arteries" RELATED [Wikipedia:Inferior_rectal_artery] synonym: "inferior hemorrhoidal artery" RELATED [Wikipedia:Inferior_rectal_artery] synonym: "inferior hemorrhoidal branches" RELATED [Wikipedia:Inferior_rectal_artery] synonym: "inferior hemorrhoidal vessels" RELATED [Wikipedia:Inferior_rectal_artery] synonym: "inferior rectal arteries" RELATED [Wikipedia:Inferior_rectal_artery] xref: EMAPA:37087 {source="MA:th"} xref: FMA:20824 xref: MA:0001979 xref: NCIT:C52938 xref: SCTID:244304007 xref: UMLS:C0226393 {source="ncithesaurus:Inferior_Rectal_Artery"} xref: Wikipedia:Inferior_rectal_artery is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035039 ! rectal artery relationship: part_of UBERON:0000159 {source="FMA-abduced-lr"} ! anal canal relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png" xsd:anyURI [Term] id: UBERON:0001358 name: perineal artery def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [Wikipedia:Perineal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria perinei" RELATED OMO:0003011 [Wikipedia:Perineal_artery] synonym: "superficial perineal artery" NARROW [Wikipedia:Perineal_artery] xref: EMAPA:37107 {source="MA:th"} xref: FMA:20836 xref: MA:0002017 xref: NCIT:C52994 xref: SCTID:244303001 xref: UMLS:C0226394 {source="ncithesaurus:Perineal_Artery"} xref: Wikipedia:Perineal_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png" xsd:anyURI [Term] id: UBERON:0001359 name: cerebrospinal fluid def: "A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." [Wikipedia:Cerebrospinal_fluid] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebral spinal fluid" EXACT [ZFA:0001626] synonym: "CSF" EXACT [] synonym: "liquor cerebrospinalis" RELATED [Wikipedia:Cerebrospinal_fluid] synonym: "spinal fluid" RELATED [BTO:0000237] xref: BIRNLEX:1798 xref: BTO:0000237 xref: CALOHA:TS-0130 xref: EFO:0000329 xref: EHDAA2:0004441 xref: ENVO:02000029 xref: EV:0100311 xref: FMA:20935 xref: GAID:1181 xref: MA:0002503 xref: MAT:0000499 xref: MESH:D002555 xref: NCIT:C12692 xref: TAO:0002184 xref: UMLS:C0007806 {source="BIRNLEX:1798", source="ncithesaurus:Cerebrospinal_Fluid"} xref: VHOG:0001278 xref: Wikipedia:Cerebrospinal_fluid xref: ZFA:0001626 is_a: UBERON:0007779 {source="Wikipedia"} ! transudate relationship: develops_from UBERON:0002307 {notes="see notes", source="EHDAA2"} ! choroid plexus of lateral ventricle property_value: editor_note "many sources state the CP as sole producer of CSF, but this is disputed [DOI:10.1007/s11064-015-1581-6]" xsd:string property_value: external_definition "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002184", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "EHDAA2 models this as developing from CP, which is wrong" xsd:string {external_ontology="EHDAA2"} property_value: external_ontology_notes "the FMA def states that this is subarachnoid spaces only. ZFA def states subarachnoid spaces and brain ventricles, but not SC (and has part_of to brain). Circulation: It circulates from the lateral ventricles to the foramen of Monro (Interventricular foramen), third ventricle, aqueduct of Sylvius (Cerebral aqueduct), fourth ventricle, foramen of Magendie (Median aperture) and foramina of Luschka (Lateral apertures), subarachnoid space over brain and spinal cord. It should be noted that the CSF moves in a pulsatile manner throughout the CSF system with nearly zero net flow. CSF is reabsorbed into venous sinus blood via arachnoid granulations." xsd:string {external_ontology="FMA"} property_value: homology_notes "In vertebrates, at early stages of Central Nervous System (CNS) development, the architecture of the brain primordium reveals the presence of the cavity of brain vesicles, which is filled by Embryonic Cerebro-Spinal Fluid (E-CSF). (...) Rat and chick E-CSF proteomes are similar, although rat is more complex in certain groups of proteins, e.g., apolipoproteins, which may be involved in the control of neural diversity, and has soluble enzymes present, just like adult human CSF, but unlike chick E-CSF, revealing phylogenetic brain differences between these groups of vertebrates.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001278", ontology="VHOG", source="DOI:10.1021/pr050213t Parada C, Gato A, Bueno D, Mammalian embryonic cerebrospinal fluid proteome has greater apolipoprotein and enzyme pattern complexity than the avian proteome. Journal of Proteome Research (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001360 name: deep circumflex iliac vein def: "A vein that corresponds to the deep circumflex iliac artery and empties near or in a common trunk with the inferior epigastric vein into the external iliac vein; deep circumflex iliac vein." [http://medical-dictionary.thefreedictionary.com/circumflex+iliac+vein] subset: human_reference_atlas subset: uberon_slim synonym: "circumflex iliac vein" EXACT [] synonym: "deep iliac circumflex vein" EXACT [] synonym: "iliac circumflex vein" EXACT [] synonym: "vena circumflexa iliaca profunda" EXACT [] synonym: "vena circumflexa ilium profunda" RELATED OMO:0003011 [Wikipedia:Deep_circumflex_iliac_vein] xref: EMAPA:37511 {source="MA:th"} xref: FMA:21182 xref: MA:0002099 xref: SCTID:11653007 xref: Wikipedia:Deep_circumflex_iliac_vein is_a: UBERON:0035552 ! deep vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI [Term] id: UBERON:0001361 name: femoral vein def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [Wikipedia:Femoral_vein] subset: human_reference_atlas subset: uberon_slim synonym: "vena femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_vein] xref: AAO:0010237 xref: EMAPA:17876 xref: FMA:21185 xref: GAID:533 xref: galen:FemoralVein xref: MA:0002118 xref: MESH:D005268 xref: NCIT:C12716 xref: SCTID:362071002 xref: UMLS:C0015809 {source="ncithesaurus:Femoral_Vein"} xref: Wikipedia:Femoral_vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Either of the primary veins in the hindlimbs which collect blood from the hindlimb region.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010237", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001362 name: perineal vein subset: human_reference_atlas xref: EMAPA:37179 {source="MA:th"} xref: FMA:21246 xref: MA:0002193 xref: SCTID:312507009 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001363 name: great saphenous vein def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [Wikipedia:Great_saphenous_vein] subset: human_reference_atlas subset: uberon_slim synonym: "greater saphenous vein" EXACT [] synonym: "large saphenous vein" RELATED [BTO:0003271] synonym: "long saphenous vein" RELATED [] synonym: "vena saphena magna" RELATED OMO:0003011 [Wikipedia:Great_saphenous_vein] xref: BTO:0003271 xref: EMAPA:37147 {source="MA:th"} xref: FMA:21376 xref: galen:GreaterSaphenousVein xref: galen:GreatSaphenousVein xref: MA:0002216 xref: NCIT:C33004 xref: SCTID:181402008 xref: UMLS:C0392907 {source="ncithesaurus:Long_Saphenous_Vein"} xref: Wikipedia:Great_saphenous_vein is_a: UBERON:0007318 ! saphenous vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png" xsd:anyURI [Term] id: UBERON:0001364 name: obsolete circumpennate synonym: "radial" EXACT [] synonym: "radialis" EXACT OMO:0003011 [FMA:21431, FMA:TA] synonym: "radials" RELATED [] is_obsolete: true consider: FMA:21431 consider: ZFA:0000271 [Term] id: UBERON:0001365 name: sacro-iliac joint def: "The joint in the bony pelvis between the sacrum and the ilium of the pelvis, which are joined by strong ligaments." [Wikipedia:Sacroiliac_joint] subset: pheno_slim subset: uberon_slim synonym: "articulatio sacro-iliaca" EXACT [] synonym: "sacroiliac joint" EXACT [] xref: EMAPA:19300 xref: FMA:21440 xref: GAID:268 xref: MA:0001506 xref: MESH:D012446 xref: NCIT:C33507 xref: SCTID:182199004 xref: UMLS:C0036036 {source="ncithesaurus:Sacroiliac_Joint"} xref: Wikipedia:Sacroiliac_joint is_a: UBERON:0011107 {source="FMA"} ! synovial joint of pelvic girdle is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001270 ! bony pelvis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray319.png" xsd:anyURI property_value: taxon_notes "In humans, the sacrum supports the spine and is supported in turn by an ilium on each side" xsd:string [Term] id: UBERON:0001366 name: parietal peritoneum alt_id: UBERON:0004459 def: "The outer layer of peritoneum that is attached to the abdominal and pelvic walls." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Peritoneum#Types] subset: uberon_slim subset: vertebrate_core synonym: "parietal serous membrane of peritoneum" EXACT [UBERON:cjm] synonym: "peritoneal cavity lining" RELATED [] xref: AAO:0010816 xref: EMAPA:16591 xref: FMA:21451 xref: SCTID:362700006 xref: TAO:0005131 xref: VHOG:0001527 xref: Wikipedia:Parietal_peritoneum xref: ZFA:0005131 is_a: UBERON:0022351 ! parietal serous membrane relationship: part_of UBERON:0002358 ! peritoneum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png" xsd:anyURI property_value: external_definition "Peritoneum attached to the abdominal wall.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010816", ontology="AAO", source="AAO:JMG"} [Term] id: UBERON:0001367 name: external anal sphincter def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:Sphincter_ani_externus_muscle] comment: Some literature reports don't consider the external anal sphincter to be a true sphincter muscle. subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "external sphincter ani" EXACT [] synonym: "musculus sphincter ani externus" EXACT [] synonym: "sphincter ani externus" RELATED OMO:0003011 [] xref: EMAPA:18265 xref: FMA:21930 xref: MA:0001531 xref: NCIT:C32548 xref: SCTID:244969008 xref: UMLS:C0224395 {source="ncithesaurus:External_Anal_Sphincter"} xref: Wikipedia:Sphincter_ani_externus_muscle is_a: UBERON:0003898 ! skeletal muscle tissue of trunk is_a: UBERON:0004519 ! muscle of anal triangle is_a: UBERON:0004832 {source="MA"} ! anal region skeletal muscle is_a: UBERON:0004916 ! anal sphincter is_a: UBERON:0007522 ! striated muscle sphincter relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2344" xsd:string [Term] id: UBERON:0001368 name: obturator externus def: "An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]." [Wikipedia:Obturator_externus_muscle] subset: uberon_slim synonym: "external obturator" EXACT [] synonym: "external obturator" RELATED [Wikipedia:Obturator_externus_muscle] synonym: "external obturatus" RELATED [Wikipedia:Obturator_externus_muscle] synonym: "externus obturator" RELATED [Wikipedia:Obturator_externus_muscle] synonym: "M. obturator externus" EXACT [AAO:0010043] synonym: "musculus obturatorius externus" RELATED OMO:0003011 [Wikipedia:Obturator_externus_muscle] synonym: "obturator externus" RELATED [Wikipedia:Obturator_externus_muscle] synonym: "obturatorius externus" RELATED [Wikipedia:Obturator_externus_muscle] synonym: "obturatus externus" RELATED [Wikipedia:Obturator_externus_muscle] xref: AAO:0010043 xref: EMAPA:36236 xref: FMA:22299 xref: MA:0002347 xref: NCIT:C33191 xref: SCTID:245026009 xref: UMLS:C1518528 {source="ncithesaurus:Obturator_Externus_Muscle"} xref: Wikipedia:Obturator_externus_muscle is_a: UBERON:0011043 {source="FMA"} ! obturator muscle is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG" xsd:anyURI property_value: external_definition "Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010043", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "the definition generalized to accommodate the AAO class - 'Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.' [AAO:0010043]" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0001369 name: iliacus muscle def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [Wikipedia:Iliacus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "anterior muscle of pelvic girdle" EXACT [] synonym: "iliacus" EXACT [MA:0002318] synonym: "iliacus muscle" RELATED [Wikipedia:Iliacus_muscle] synonym: "musculus iliacus" RELATED OMO:0003011 [Wikipedia:Iliacus_muscle] xref: EMAPA:19164 xref: FMA:22310 xref: MA:0002318 xref: NCIT:C32762 xref: SCTID:244956009 xref: UMLS:C0224418 {source="ncithesaurus:Iliacus"} xref: Wikipedia:Iliacus_muscle is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI property_value: external_ontology_notes "AAO has iliacus major and minor, both of which attach to ilium and femur - consider grouping these somehow" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0001370 name: gluteus maximus def: "The largest and most superficial of the three gluteal muscles [WP,unvetted]." [Wikipedia:Gluteus_maximus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "glutaeus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle] synonym: "gluteus maximus muscle" EXACT [Wikipedia:Gluteus_maximus_muscle] synonym: "gluteus superficialis" RELATED [] synonym: "glutæus maximus" EXACT [] synonym: "m.gluteus maximus" EXACT [] synonym: "musculus gluteus maximus" RELATED OMO:0003011 [Wikipedia:Gluteus_maximus_muscle] xref: EMAPA:18527 xref: FMA:22314 xref: MA:0002309 xref: NCIT:C52560 xref: SCTID:181674001 xref: UMLS:C0224424 {source="ncithesaurus:Gluteus_Maximus"} xref: Wikipedia:Gluteus_maximus_muscle is_a: UBERON:0002000 ! gluteal muscle is_a: UBERON:0011645 ! iliofemoralis muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG" xsd:anyURI property_value: taxon_notes "In humans, it makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa." xsd:string [Term] id: UBERON:0001371 name: gluteus medius def: "One of three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [Wikipedia:Gluteus_medius_muscle] subset: uberon_slim synonym: "gluteus medius muscle" RELATED [Wikipedia:Gluteus_medius_muscle] synonym: "musculus gluteus medius" RELATED OMO:0003011 [Wikipedia:Gluteus_medius_muscle] xref: EMAPA:19163 xref: FMA:22315 xref: galen:GluteusMedius xref: MA:0002310 xref: NCIT:C52933 xref: SCTID:181675000 xref: UMLS:C0224425 {source="ncithesaurus:Gluteus_Medius"} xref: Wikipedia:Gluteus_medius_muscle is_a: UBERON:0002000 ! gluteal muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG" xsd:anyURI property_value: taxon_notes "A&P heads in rat, single head in humans[DOI:10.1002/ar.22919]" xsd:string [Term] id: UBERON:0001372 name: psoas minor muscle def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]." [Wikipedia:Psoas_minor_muscle] comment: Human variation notes: It is absent in 40% of individuals. subset: human_reference_atlas subset: uberon_slim synonym: "m. psoas minor" RELATED OMO:0003011 [Wikipedia:Psoas_minor_muscle] synonym: "psoas minor" EXACT [MA:0002359] xref: BTO:0001878 xref: EMAPA:18170 xref: FMA:22350 xref: MA:0002359 xref: NCIT:C33421 xref: SCTID:244954007 xref: UMLS:C0224420 {source="ncithesaurus:Psoas_Minor"} xref: Wikipedia:Psoas_minor_muscle is_a: UBERON:0008450 {source="MA"} ! psoas muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray430.png" xsd:anyURI [Term] id: UBERON:0001373 name: sartorius muscle def: "The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle." [Wikipedia:Sartorius_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "ambliens" RELATED SENSU [] synonym: "M. sartorius" RELATED [] synonym: "musculus sartorius" RELATED OMO:0003011 [Wikipedia:Sartorius_muscle] synonym: "sartorius" EXACT [MA:0002368] xref: BTO:0001215 xref: EHDAA2:0001776 xref: EHDAA:10583 xref: EMAPA:37693 {source="MA:th"} xref: FMA:22353 xref: galen:Sartorius xref: MA:0002368 xref: NCIT:C33515 xref: SCTID:181683006 xref: UMLS:C0224434 {source="ncithesaurus:Sartorius_Muscle"} xref: VHOG:0001192 xref: Wikipedia:Sartorius_muscle is_a: UBERON:0001630 ! muscle organ relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Sartorius.png" xsd:anyURI property_value: editor_note "We do NOT group this AAO class here at this stage until further evidence of shared attachments" xsd:string property_value: homology_notes "The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001192", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.391", source="http://bgee.unil.ch/"} property_value: taxon_notes "No iliotibialis in AAO - M. sartorius has def: 'Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis.' [AAO:0010027]" xsd:string property_value: taxon_notes "The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius. Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.391 [VHOG:0001192]" xsd:string [Term] id: UBERON:0001374 name: biceps femoris def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "biceps femoris muscle" EXACT [BTO:0003418] synonym: "musculus biceps femoris" RELATED OMO:0003011 [Wikipedia:Biceps_femoris_muscle] xref: BTO:0003418 xref: EFO:0001418 xref: EMAPA:35170 xref: FMA:22356 xref: galen:BicepsFemoris xref: MA:0002270 xref: NCIT:C53147 xref: SCTID:181672002 xref: UMLS:C0224449 {source="ncithesaurus:Biceps_Femoris"} xref: Wikipedia:Biceps_femoris_muscle is_a: UBERON:0002463 {source="cjm"} ! muscle of posterior compartment of hindlimb stylopod relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG" xsd:anyURI [Term] id: UBERON:0001375 name: semitendinosus def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [Wikipedia:Semitendinosus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "musculus semitendinosus" RELATED OMO:0003011 [BTO:0001236, Wikipedia:Semitendinosus_muscle] synonym: "semitendinosus muscle" EXACT [] xref: BTO:0001236 xref: EMAPA:35762 xref: FMA:22357 xref: galen:Semitendinosus xref: MA:0002375 xref: NCIT:C53176 xref: SCTID:181685004 xref: UMLS:C0224453 {source="ncithesaurus:Semitendinosus"} xref: Wikipedia:Semitendinosus_muscle is_a: UBERON:0002463 {source="cjm"} ! muscle of posterior compartment of hindlimb stylopod relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/3f/Semitendinosus_muscle.PNG" xsd:anyURI property_value: taxon_notes "A&P heads in rat, single head in humans[DOI:10.1002/ar.22919]" xsd:string [Term] id: UBERON:0001376 name: tensor fasciae latae muscle def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [Wikipedia:Tensor_fasciae_latae_muscle] subset: uberon_slim synonym: "musculus tensor fasciae latae" EXACT OMO:0003011 [FMA:22423, FMA:TA, Wikipedia:Tensor_fasciae_latae_muscle] synonym: "tensor fasciae lata" EXACT [MA:0002391] synonym: "tensor fasciae lata muscle" EXACT [] synonym: "tensor fasciae latae" EXACT [FMA:22423] synonym: "tensor of fascia lata" EXACT [] xref: EMAPA:35855 xref: FMA:22423 xref: MA:0002391 xref: NCIT:C53072 xref: SCTID:181671009 xref: UMLS:C1384497 {source="ncithesaurus:Tensor_Fasciae_Lata"} xref: Wikipedia:Tensor_fasciae_latae_muscle is_a: UBERON:0002000 ! gluteal muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/Anatomical_dissection5.JPG" xsd:anyURI [Term] id: UBERON:0001377 name: quadriceps femoris def: "One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius)." [ISBN:0073040584] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "musculus quadriceps femoris" RELATED OMO:0003011 [BTO:0001149, Wikipedia:Quadriceps_femoris_muscle] synonym: "quadricep muscle" RELATED [BTO:0001149] synonym: "quadriceps" EXACT [] synonym: "quadriceps femoris muscle" EXACT [] synonym: "quadriceps muscle" RELATED [BTO:0001149] synonym: "quadriceps muscle of the thigh" RELATED [BTO:0001149] synonym: "quadriceps muscle of thigh" RELATED [BTO:0001149] xref: BTO:0001149 xref: EFO:0001938 xref: EHDAA2:0001583 xref: EHDAA:8299 xref: EMAPA:19146 xref: FMA:22428 xref: galen:QuadricepsFemoris xref: MA:0002363 xref: MESH:D052097 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33441 xref: SCTID:181669009 xref: UMLS:C0224440 {source="ncithesaurus:Quadriceps_Muscle_of_the_Thigh"} xref: VHOG:0000828 xref: Wikipedia:Quadriceps_femoris_muscle is_a: UBERON:0003663 ! hindlimb muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg" xsd:anyURI property_value: external_definition "The quadriceps is a collective term for the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.391][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000828", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001378 name: rectus femoris def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [Wikipedia:Rectus_femoris_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "musculus rectos femoris" EXACT [] xref: BTO:0001564 xref: EMAPA:36266 xref: FMA:22430 xref: MA:0002365 xref: NCIT:C53175 xref: SCTID:181679006 xref: UMLS:C0584894 {source="ncithesaurus:Rectus_Femoris"} xref: Wikipedia:Rectus_femoris_muscle is_a: UBERON:0001377 ! quadriceps femoris relationship: part_of UBERON:0001377 {source="ISBN:0073040584"} ! quadriceps femoris relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png" xsd:anyURI [Term] id: UBERON:0001379 name: vastus lateralis def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [Wikipedia:Vastus_lateralis] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "lateralis" BROAD [] synonym: "vastus externus" RELATED [BTO:0001563] synonym: "vastus lateralis muscle" EXACT [] xref: BTO:0001563 xref: EFO:0001937 xref: EMAPA:36244 xref: FMA:22431 xref: galen:VastusLateralis xref: MA:0002402 xref: NCIT:C53073 xref: UMLS:C0224444 {source="ncithesaurus:Vastus_Lateralis"} xref: Wikipedia:Vastus_lateralis is_a: UBERON:0001377 ! quadriceps femoris relationship: part_of UBERON:0001377 {source="ISBN:0073040584"} ! quadriceps femoris relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg" xsd:anyURI [Term] id: UBERON:0001380 name: vastus medialis def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [Wikipedia:Vastus_medialis] subset: human_reference_atlas subset: uberon_slim synonym: "medialis" BROAD [] synonym: "vastus internus" RELATED [BTO:0004913] synonym: "vastus medialis muscle" EXACT [] xref: BTO:0004913 xref: EMAPA:36245 xref: FMA:22432 xref: galen:VastusMedialis xref: MA:0002403 xref: NCIT:C117736 xref: Wikipedia:Vastus_medialis is_a: UBERON:0001377 ! quadriceps femoris relationship: part_of UBERON:0001377 {source="ISBN:0073040584"} ! quadriceps femoris relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/0/05/Illu_lower_extremity_muscles.jpg" xsd:anyURI [Term] id: UBERON:0001381 name: semimembranosus muscle def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [Wikipedia:Semimembranosus] subset: human_reference_atlas subset: uberon_slim synonym: "musculus semimembranosus" EXACT OMO:0003011 [BTO:0003177] synonym: "semimembranosus" EXACT [MA:0002371] xref: BTO:0003177 xref: EMAPA:36242 xref: FMA:22438 xref: galen:Semimembranosus xref: MA:0002371 xref: NCIT:C52987 xref: UMLS:C0224452 {source="ncithesaurus:Semimembranosus"} xref: Wikipedia:Semimembranosus is_a: UBERON:0002463 {source="cjm"} ! muscle of posterior compartment of hindlimb stylopod relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/Semimembranosus_muscle.PNG" xsd:anyURI [Term] id: UBERON:0001382 name: pectineus muscle def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]." [Wikipedia:Pectineus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "M. pectineus" EXACT [AAO:0010036] synonym: "musculus pectineus" RELATED OMO:0003011 [Wikipedia:Pectineus_muscle] synonym: "pectineus" EXACT [] xref: AAO:0010036 xref: EMAPA:36238 xref: FMA:22440 xref: MA:0002353 xref: NCIT:C52978 xref: SCTID:245017006 xref: UMLS:C0224447 {source="ncithesaurus:Pectineus"} xref: Wikipedia:Pectineus_muscle is_a: UBERON:0004252 ! hindlimb stylopod muscle is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI property_value: external_definition "Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010036", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "Definition generalized to accommodate AAO class - 'Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft.' [AAO:0010036]" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0001383 name: muscle of leg alt_id: UBERON:0003270 def: "A muscle that is part of the region of the hindlimb between the pelvis and ankle." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Leg_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "leg muscle" EXACT [] synonym: "leg muscle organ" EXACT [OBOL:automatic] synonym: "leg skeletal muscle" EXACT [OBOL:automatic] synonym: "leg skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "muscle of hindlimb zeugopod or stylopod" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] synonym: "muscle of thigh or crus" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] synonym: "muscle of upper or lower hindlimb segment" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] synonym: "muscle of upper/lower leg" EXACT [] synonym: "muscle organ of leg" EXACT [OBOL:automatic] synonym: "skeletal muscle of leg" EXACT [OBOL:automatic] xref: BTO:0000722 xref: EHDAA:8291 xref: MA:0000672 xref: RETIRED_EHDAA2:0000974 xref: Wikipedia:Leg_muscle is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0004466 {source="prolog"} ! musculature of leg relationship: present_in_taxon NCBITaxon:9606 property_value: terminology_notes "see notes on UBERON:0000978 for possible confusion over the term 'leg'." xsd:string [Term] id: UBERON:0001384 name: primary motor cortex def: "The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html." [NLX:143555] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "excitable area" RELATED [BTO:0004348] synonym: "gyrus precentralis" RELATED OMO:0003011 [Wikipedia:Primary_motor_cortex] synonym: "motor area" RELATED [BTO:0004348] synonym: "motor cortex" EXACT [FMA:224854] synonym: "prefrontal gyrus" RELATED [MP:0000798, Wikipedia:Primary_motor_cortex] synonym: "primary motor area" RELATED [BAMS:MOp] synonym: "Rolando's area" RELATED [BTO:0004348] synonym: "somatic motor areas" RELATED [BAMS:MO] synonym: "somatomotor areas" RELATED [BAMS:MO] xref: BAMS:M1 xref: BAMS:MO xref: BAMS:MOp xref: BM:Tel-Cx-M1 xref: BTO:0004348 xref: DHBA:10162 xref: EFO:0002472 xref: EMAPA:35704 xref: FMA:224854 xref: MA:0000907 xref: MBA:985 xref: MESH:D009044 xref: NCIT:C97339 xref: neuronames:1910 xref: NLX:143555 xref: SCTID:11931008 xref: UMLS:C0026607 {source="ncithesaurus:Primary_Motor_Cortex"} xref: Wikipedia:Primary_motor_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001870 {source="MA", source="Wikipedia"} ! frontal cortex relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png" xsd:anyURI property_value: editor_note "TODO - in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 parietal lobe" xsd:string property_value: external_definition "the area of the frontal lobe that is involved with integration of voluntary movements and with speech.[MP]" xsd:string {date_retrieved="2012-08-31", external_class="MP:0000800", ontology="MP", source="MGI:csmith"} property_value: external_definition "The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html" xsd:string {source="NLX:143555"} [Term] id: UBERON:0001385 name: tibialis anterior def: "A muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]." [http://evolutionwiki.org/wiki/M._tibialis_cranialis, Wikipedia:Tibialis_anterior_muscle] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "anterior tibialis" RELATED [BTO:0001382] synonym: "ibialis anticus" RELATED [BTO:0001382] synonym: "musculus tibialis anterior" RELATED OMO:0003011 [Wikipedia:Tibialis_anterior_muscle] synonym: "tibialis anterior muscle" EXACT [BTO:0001382] synonym: "tibialis cranialis" EXACT [MA:0002395] synonym: "tibilais cranialis" EXACT [] xref: BTO:0001382 xref: EFO:0001385 xref: EMAPA:35866 xref: FMA:22532 xref: galen:TibialisAnterior xref: MA:0002395 xref: NCIT:C53079 xref: SCTID:181696007 xref: UMLS:C1710423 {source="ncithesaurus:Tibialis_Cranialis"} xref: Wikipedia:Tibialis_anterior_muscle is_a: UBERON:0008230 ! tibialis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png" xsd:anyURI [Term] id: UBERON:0001386 name: extensor digitorum longus def: "A penniform muscle of the lateral front part of the hindlimb responsible for extension of the digits and dorsiflexion of the ankle." [MP:0004246] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "extensor digitorum longus muscle" EXACT [BTO:0000436] synonym: "musculus extensor digitorum longus" RELATED OMO:0003011 [Wikipedia:Extensor_digitorum_longus_muscle] synonym: "toe extensor" EXACT [HP:0011916] synonym: "toe extensor muscle" EXACT [] xref: BTO:0000436 xref: EMAPA:35330 xref: FMA:22534 xref: MA:0002295 xref: NCIT:C52918 xref: UMLS:C0224464 {source="ncithesaurus:Extensor_Digitorum_Longus"} xref: Wikipedia:Extensor_digitorum_longus_muscle is_a: UBERON:0000311 {source="BTO"} ! extensor muscle is_a: UBERON:0003663 ! hindlimb muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png" xsd:anyURI [Term] id: UBERON:0001387 name: fibularis longus def: "A superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [Wikipedia:Peroneus_longus] subset: pheno_slim subset: uberon_slim synonym: "fibularis longus" RELATED [Wikipedia:Peroneus_longus] synonym: "fibularis longus muscle" RELATED [Wikipedia:Peroneus_longus] synonym: "musculus peroneus longus" EXACT OMO:0003011 [FMA:22539, FMA:TA] synonym: "peronaei longus" RELATED [Wikipedia:Peroneus_longus] synonym: "peronaeus longus" RELATED [Wikipedia:Peroneus_longus] synonym: "peroneous longus" RELATED [Wikipedia:Peroneus_longus] synonym: "peroneus longus" EXACT [] synonym: "peroneus longus muscle" EXACT [] synonym: "peroneus longus muscle" RELATED [Wikipedia:Peroneus_longus] xref: EMAPA:36253 xref: FMA:22539 xref: galen:PeroneusLongus xref: MA:0002356 xref: NCIT:C53171 xref: SCTID:361825008 xref: UMLS:C0224469 {source="ncithesaurus:Peroneus_Longus"} xref: Wikipedia:Peroneus_longus is_a: UBERON:0009132 ! peroneus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png" xsd:anyURI [Term] id: UBERON:0001388 name: gastrocnemius def: "The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584, MP:0013188] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "gastrocnemius muscle" EXACT [BTO:0000506] synonym: "m. gastrocnemius" EXACT [] synonym: "m.gastrocnemius" EXACT [] synonym: "musculus gastrocnemius" RELATED OMO:0003011 [Wikipedia:Gastrocnemius_muscle] xref: BTO:0000506 xref: EFO:0001413 xref: EHDAA2:0000701 xref: EHDAA:8293 xref: EMAPA:35375 xref: FMA:22541 xref: galen:Gastrocnemius xref: MA:0002306 xref: NCIT:C32666 xref: SCTID:181700004 xref: UMLS:C0242691 {source="ncithesaurus:Gastrocnemius_Muscle"} xref: VHOG:0001193 xref: Wikipedia:Gastrocnemius_muscle is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png" xsd:anyURI property_value: external_definition "The most superficial calf muscle in the posterior part of the leg. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001193", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/gastrocnemius"} property_value: function_notes "involved in standing, walking, running and jumping" xsd:string property_value: homology_notes "The most prominent ventral muscle of the shank is the gastrocnemius, the 'calf' muscle. In mammals, it has two heads, resulting from the fusion of two different phylogenetic predecessors.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001193", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.393", source="http://bgee.unil.ch/"} property_value: taxon_notes "In mammals this muscle has two heads[ISBN:0073040584]" xsd:string [Term] id: UBERON:0001389 name: soleus muscle def: "A deep muscle of the triceps surae group, in the superficial posterior compartment of the leg." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Soleus_muscle] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "soleus" EXACT [MA:0002424] xref: BTO:0001265 xref: EFO:0001946 xref: EMAPA:35786 xref: FMA:22542 xref: galen:Soleus xref: MA:0002424 xref: NCIT:C53075 xref: SCTID:181702007 xref: UMLS:C0242694 {source="ncithesaurus:Soleus"} xref: Wikipedia:Soleus_muscle is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: never_in_taxon NCBITaxon:9611 {source="Wikipedia:Soleus"} relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg" xsd:anyURI property_value: function_notes "responsible for plantar flexion of the foot" xsd:string {source="MP:0003081"} property_value: has_relational_adjective "soleal" xsd:string [Term] id: UBERON:0001390 name: sural artery def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [Wikipedia:Sural_artery] subset: human_reference_atlas subset: uberon_slim xref: EMAPA:37125 {source="MA:th"} xref: FMA:22570 xref: MA:0002058 xref: NCIT:C52734 xref: SCTID:302693002 xref: UMLS:C0226464 {source="ncithesaurus:External_Sural_Artery"} xref: Wikipedia:Sural_artery is_a: UBERON:0001637 ! artery property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray551.png" xsd:anyURI property_value: editor_note "TODO - check NCITA class" xsd:string [Term] id: UBERON:0001391 name: popliteus muscle def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [Wikipedia:Popliteus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "m.popliteus" EXACT [] synonym: "musculus popliteus" RELATED OMO:0003011 [Wikipedia:Popliteus_muscle] synonym: "poplitea" EXACT [] synonym: "popliteal" EXACT [] synonym: "popliteal muscle" EXACT [FMA:22590] synonym: "popliteus" EXACT [FMA:22590, MA:0002554] xref: EMAPA:36240 xref: FMA:22590 xref: MA:0002554 xref: NCIT:C33340 xref: SCTID:245032004 xref: UMLS:C0224457 {source="ncithesaurus:Popliteus_Muscle"} xref: Wikipedia:Popliteus_muscle is_a: UBERON:0001383 ! muscle of leg relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray439.png" xsd:anyURI [Term] id: UBERON:0001392 name: flexor hallucis longus def: "A deep muscle of the posterior compartment of the hindlimb that is innervated by the tibial nerve, arises from the fibula and insets in the distal phalanx of pedal digit 1." [Wikipedia:Flexor_hallucis_longus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "flexor hallucis longus muscle" EXACT [Wikipedia:Flexor_hallucis_longus_muscle] xref: EMAPA:37588 {source="MA:th"} xref: FMA:22593 xref: MA:0002301 xref: NCIT:C52925 xref: SCTID:361826009 xref: UMLS:C0224473 {source="ncithesaurus:Flexor_Hallucis_Longus"} xref: Wikipedia:Flexor_hallucis_longus_muscle is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0001383 ! muscle of leg relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png" xsd:anyURI [Term] id: UBERON:0001393 name: auditory cortex def: "The part of the brain that is the ultimate target of afferent auditory information." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] subset: pheno_slim subset: uberon_slim synonym: "A1 (primary auditory cortex)" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "anterior transverse temporal area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "auditory area" RELATED [BTO:0004343] synonym: "auditory areas" RELATED [BAMS:AUD] synonym: "auditory cortex" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "BA41" RELATED OMO:0003000 [] synonym: "BA42" RELATED OMO:0003000 [] synonym: "Brodmann area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "Brodmann area 41 & 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "Brodmann area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "posterior transverse temporal area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "primary auditory cortex" RELATED [Wikipedia:Auditory_cortex] synonym: "temporal auditory neocortex" RELATED [GEO:GSE13344] xref: BAMS:Area_1 xref: BAMS:Au1 xref: BAMS:AUD xref: BTO:0004343 xref: EMAPA:35156 xref: FMA:226221 xref: GAID:682 xref: MA:0000942 xref: MBA:247 xref: MESH:D001303 xref: NCIT:C52712 xref: neuronames:1556 xref: UMLS:C0004302 {source="ncithesaurus:Auditory_Cortex"} xref: Wikipedia:Auditory_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001871 {source="MA"} ! temporal lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Brodmann_41_42.png" xsd:anyURI [Term] id: UBERON:0001394 name: axillary artery def: "Artery that supplies the axilla." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: uberon_slim synonym: "arteria axillaris" EXACT OMO:0003011 [Wikipedia:Axillary_artery] synonym: "axillary part of subclavian artery" EXACT [FMA:22654] synonym: "axillary part of trunk of subclavian artery" EXACT [] xref: EMAPA:18749 xref: FMA:22654 xref: GAID:473 xref: galen:AxillaryArtery xref: MA:0002573 xref: MESH:D001366 xref: NCIT:C32169 xref: SCTID:181321001 xref: UMLS:C0004455 {source="ncithesaurus:Axillary_Artery"} xref: Wikipedia:Axillary_artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001467 ! shoulder relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/88/Axillary_limits.PNG" xsd:anyURI property_value: taxon_notes "In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery." xsd:string [Term] id: UBERON:0001395 name: thoraco-acromial artery def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [Wikipedia:Thoraco-acromial_artery] subset: human_reference_atlas subset: uberon_slim synonym: "acromiothoracic artery" EXACT [] synonym: "thoracoacromial artery" EXACT [] xref: EMAPA:37128 {source="MA:th"} xref: FMA:22671 xref: MA:0002064 xref: NCIT:C32046 xref: SCTID:244315002 xref: UMLS:C0226420 {source="ncithesaurus:Acromial_Thoracic_Artery"} xref: Wikipedia:Thoraco-acromial_artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001467 ! shoulder relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG" xsd:anyURI [Term] id: UBERON:0001396 name: lateral thoracic artery def: "A blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [Wikipedia:Lateral_thoracic_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria thoracalis lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_thoracic_artery] synonym: "external mammary artery" EXACT [] xref: EMAPA:37095 {source="MA:th"} xref: FMA:22674 xref: MA:0001989 xref: NCIT:C52951 xref: SCTID:206135006 xref: UMLS:C0226421 {source="ncithesaurus:Lateral_Thoracic_Artery"} xref: Wikipedia:Lateral_thoracic_artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001467 ! shoulder relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG" xsd:anyURI [Term] id: UBERON:0001397 name: subscapular artery def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [Wikipedia:Subscapular_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria subscapularis" RELATED OMO:0003011 [Wikipedia:Subscapular_artery] xref: EMAPA:37116 {source="MA:th"} xref: FMA:22677 xref: MA:0002050 xref: NCIT:C33650 xref: SCTID:244311006 xref: UMLS:C0226422 {source="ncithesaurus:Subscapular_Artery"} xref: Wikipedia:Subscapular_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG" xsd:anyURI [Term] id: UBERON:0001398 name: brachial artery def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [Wikipedia:Brachial_artery] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "arteria brachialis" RELATED OMO:0003011 [Wikipedia:Brachial_artery] synonym: "brachial part of trunk of subclavian artery" EXACT [] xref: AAO:0010504 xref: EFO:0004231 xref: FMA:22689 xref: GAID:475 xref: galen:BrachialArtery xref: MA:0001921 xref: MESH:D001916 xref: NCIT:C12681 xref: SCTID:181322008 xref: UMLS:C0006087 {source="ncithesaurus:Brachial_Artery"} xref: Wikipedia:Brachial_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray525.png" xsd:anyURI property_value: external_definition "Part of the subclavian artery which supplies blood to the forelimb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010504", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001399 name: deep brachial artery def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [Wikipedia:Deep_brachial_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria profunda brachii" EXACT OMO:0003011 [FMA:22695, FMA:TA] synonym: "profunda brachii artery" EXACT [] xref: EMAPA:37215 {source="MA:th"} xref: FMA:22695 xref: MA:0002026 xref: SCTID:41065002 xref: Wikipedia:Deep_brachial_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003507 ! arm blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray526.png" xsd:anyURI [Term] id: UBERON:0001400 name: iliocostalis thoracis muscle def: "The iliocostalis dorsi (musculus accessorius; iliocostalis thoracis) arises by flattened tendons from the upper borders of the angles of the lower six ribs medial to the tendons of insertion of the iliocostalis lumborum; these become muscular, and are inserted into the upper borders of the angles of the upper six ribs and into the back of the transverse process of the seventh cervical vertebra." [Wikipedia:Iliocostalis#Iliocostalis_thoracis] subset: human_reference_atlas synonym: "iliocostalis thoracis" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis thoracis muscle" RELATED [Wikipedia:Iliocostalis] synonym: "musculus accessorius" RELATED [Wikipedia:Iliocostalis] xref: EMAPA:37604 {source="MA:th"} xref: FMA:22703 xref: MA:0002320 xref: SCTID:244856005 xref: Wikipedia:Iliocostalis#Iliocostalis_thoracis is_a: UBERON:0002251 ! iliocostalis muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001401 name: longissimus thoracis muscle def: "The longissimus thoracis is the intermediate and largest of the continuations of the sacrospinalis.[WP]. intermediate erector spinae muscle of back; origin, with iliocostalis and from transverse processes of lower thoracic vertebrae; insertion, by lateral slips into most or all of the ribs between angles and tubercles and into tips of transverse processes of upper lumbar vertebrae, and by medial slips into accessory processes of upper lumbar and transverse processes of thoracic vertebrae; action, extends vertebral column; nerve supply, dorsal primary rami of thoracic and lumbar spinal nerves[Stedmans]." [http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29, Wikipedia:Longissimus#Longissimus_thoracis] subset: human_reference_atlas subset: uberon_slim synonym: "longissimus dorsi" EXACT [BTO:0001651] synonym: "longissimus dorsi muscle" EXACT [] synonym: "longissimus thoracis" EXACT [MA:0002339] synonym: "musculus longissimus dorsi" EXACT OMO:0003011 [http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29] synonym: "musculus longissimus thoracis" EXACT OMO:0003011 [BTO:0001651] xref: AAO:0010775 xref: BTO:0001651 xref: EMAPA:37653 {source="MA:th"} xref: FMA:22709 xref: MA:0002339 xref: NCIT:C53169 xref: SCTID:244859003 xref: UMLS:C0224307 {source="ncithesaurus:Longissimus_Thoracis"} xref: Wikipedia:Longissimus#Longissimus_thoracis is_a: UBERON:0000392 {source="FMA"} ! longissimus muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png" xsd:anyURI property_value: editor_note "TODO - add logical definition to determine if AAO class belongs here. Classified as erector spinae in AAO" xsd:string property_value: external_definition "Epaxial muscle which originates on the antero-lateral urostyle and inserts variably along the neural spines and transverse processes of the presacral vertebrae to the exoccipital bone.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010775", ontology="AAO", source="AAO:MEJ"} [Term] id: UBERON:0001402 name: longissimus cervicis muscle def: "A muscle with origin in transverse processes of upper thoracic vertebrae, and insertion in transverse processes of middle and upper cervical vertebrae that extends cervical vertebrae." [http://medical-dictionary.thefreedictionary.com/longissimus+cervicis+muscle, UBERON:cjm] comment: ; nerve supply, dorsal primary rami of lower cervical and upper thoracic spinal nerves subset: human_reference_atlas subset: uberon_slim synonym: "longissimus cervicis" EXACT [MA:0002337] synonym: "musculus longissimus cervicis" RELATED [BTO:0001650] xref: BTO:0001650 xref: EMAPA:37651 {source="MA:th"} xref: FMA:22711 xref: MA:0002337 xref: NCIT:C53167 xref: SCTID:244860008 xref: UMLS:C0224308 {source="ncithesaurus:Longissimus_Cervicis"} xref: Wikipedia:Longissimus#Longissimus_cervicis is_a: UBERON:0000392 ! longissimus muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png" xsd:anyURI [Term] id: UBERON:0001403 name: longissimus capitis def: "A longissimus muscle that lies medial to the longissimus cervicis, between it and the semispinalis capitis. It arises by tendons from the transverse processes of the upper four or five thoracic vertebrae, and the articular processes of the lower three or four cervical vertebrae, and is inserted into the posterior margin of the mastoid process, beneath the splenius capitis and sternocleidomastoid.[WP,unvetted]." [Wikipedia:Longissimus#Longissimus_capitis] subset: uberon_slim synonym: "musculus longissimus capitis" RELATED [BTO:0001649] synonym: "trachelomastoid muscle" RELATED [Wikipedia:Longissimus#Longissimus_capitis] xref: BTO:0001649 xref: EMAPA:37650 {source="MA:th"} xref: FMA:22714 xref: MA:0002336 xref: NCIT:C53166 xref: SCTID:244861007 xref: UMLS:C0224309 {source="ncithesaurus:Longissimus_Capitis"} xref: Wikipedia:Longissimus#Longissimus_capitis is_a: UBERON:0000392 ! longissimus muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png" xsd:anyURI [Term] id: UBERON:0001404 name: radial artery def: "Branch of the brachial artery beginning below the elbow and extending down the forearm around the wrist and into the palm." [https://www.vocabulary.com/dictionary/arteria%20radialis] subset: human_reference_atlas subset: uberon_slim synonym: "arteria radialis" RELATED OMO:0003011 [Wikipedia:Radial_artery] xref: EMAPA:37112 {source="MA:th"} xref: FMA:22730 xref: GAID:506 xref: galen:RadialArtery xref: MA:0002034 xref: MESH:D017534 xref: NCIT:C12838 xref: SCTID:181332001 xref: UMLS:C0162857 {source="ncithesaurus:Radial_Artery"} xref: Wikipedia:Radial_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg" xsd:anyURI [Term] id: UBERON:0001405 name: spinalis thoracis muscle def: "Origin: spinous processes of two upper lumbar and two lower thoracic; insertion: spines of upper thoracic vertebrae; innervation: branches of spinal nerves; action: extends vertebral column." [BTO:0002624] subset: human_reference_atlas subset: uberon_slim synonym: "musculus spinalis dorsi" RELATED [BTO:0002624] synonym: "musculus spinalis thoracis" RELATED [BTO:0002624] synonym: "spinal muscle of thorax" RELATED [BTO:0002624] synonym: "spinalis dorsi" RELATED [Wikipedia:Spinalis#Spinalis_dorsi] synonym: "spinalis thoracis" EXACT [MA:0002381] xref: BTO:0002624 xref: EMAPA:37700 {source="MA:th"} xref: FMA:22765 xref: MA:0002381 xref: NCIT:C53038 xref: SCTID:244863005 xref: UMLS:C0224311 {source="ncithesaurus:Spinalis_Thoracis"} is_a: UBERON:0011013 {source="FMA"} ! spinalis muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a4/Spinalis.png" xsd:anyURI [Term] id: UBERON:0001406 name: ulnar artery def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [Wikipedia:Ulnar_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria ulnaris" EXACT OMO:0003011 [Wikipedia:Ulnar_artery] xref: EMAPA:37675 {source="MA:th"} xref: FMA:22796 xref: GAID:515 xref: galen:UlnarArtery xref: MA:0002069 xref: MESH:D017535 xref: NCIT:C12839 xref: SCTID:181333006 xref: UMLS:C0162858 {source="ncithesaurus:Ulnar_Artery"} xref: Wikipedia:Ulnar_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg" xsd:anyURI [Term] id: UBERON:0001407 name: semispinalis thoracis def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [Wikipedia:Semispinalis_dorsi] subset: uberon_slim synonym: "musculus semispinalis dorsi" RELATED OMO:0003011 [Wikipedia:Semispinalis_dorsi] synonym: "musculus semispinalis thoracis" RELATED OMO:0003011 [Wikipedia:Semispinalis_dorsi] synonym: "semispinalis dorsi" EXACT [Wikipedia:Semispinalis_dorsi] synonym: "semispinalis dorsi muscle" EXACT [Wikipedia:Semispinalis_dorsi] xref: EMAPA:37696 {source="MA:th"} xref: FMA:22828 xref: MA:0002374 xref: NCIT:C53006 xref: SCTID:244868001 xref: UMLS:C0224316 {source="ncithesaurus:Semispinalis_Thoracis"} xref: Wikipedia:Semispinalis_dorsi is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Semispinalis.png" xsd:anyURI [Term] id: UBERON:0001408 name: semispinalis cervicis def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [Wikipedia:Semispinalis_cervicis] subset: uberon_slim synonym: "musculus semispinalis cervicis" RELATED OMO:0003011 [Wikipedia:Semispinalis_cervicis] xref: EMAPA:37695 {source="MA:th"} xref: FMA:22829 xref: MA:0002373 xref: NCIT:C52991 xref: SCTID:244869009 xref: UMLS:C0224317 {source="ncithesaurus:Semispinalis_Cervicis"} xref: Wikipedia:Semispinalis_cervicis is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png" xsd:anyURI [Term] id: UBERON:0001409 name: semispinalis capitis def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [Wikipedia:Semispinalis_capitis] subset: uberon_slim synonym: "biventer cervicis" NARROW [Wikipedia:Semispinalis_capitis] synonym: "complexus" RELATED [Wikipedia:Semispinalis_capitis] synonym: "complexus muscle" RELATED [Wikipedia:Semispinalis_capitis] synonym: "musculus semispinalis capitis" RELATED OMO:0003011 [Wikipedia:Semispinalis_capitis] synonym: "semispinales capitis" RELATED [Wikipedia:Semispinalis_capitis] synonym: "semispinalis capitis muscle" RELATED [Wikipedia:Semispinalis_capitis] xref: EMAPA:37694 {source="MA:th"} xref: FMA:22830 xref: MA:0002372 xref: NCIT:C52989 xref: SCTID:244870005 xref: UMLS:C0224318 {source="ncithesaurus:Semispinalis_Capitis"} xref: Wikipedia:Semispinalis_capitis is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png" xsd:anyURI [Term] id: UBERON:0001410 name: common palmar digital artery def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [Wikipedia:Common_palmar_digital_artery] subset: human_reference_atlas subset: uberon_slim synonym: "common palmar digital arteries" EXACT [] xref: EMAPA:37207 {source="MA:th"} xref: FMA:22852 xref: MA:0001957 xref: NCIT:C52744 xref: SCTID:38396009 xref: UMLS:C0226446 {source="ncithesaurus:Common_Palmar_Digital_Artery"} xref: Wikipedia:Common_palmar_digital_artery is_a: UBERON:0006141 ! palmar digital artery relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "the MA term, even though plural, represents the singular, as it is an isa child of artery" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001411 name: basilic vein def: "A superficial vein of the upper limb that drain parts of manus and forearm." [Wikipedia:Basilic_vein] subset: human_reference_atlas subset: uberon_slim synonym: "basilic vein of forearm" EXACT [] synonym: "vena basilica antebrachii" EXACT OMO:0003011 [FMA:22908, FMA:TA] xref: EMAPA:37439 {source="MA:th"} xref: FMA:22908 xref: galen:BasilicVein xref: MA:0002086 xref: NCIT:C32197 xref: SCTID:181393008 xref: UMLS:C0226801 {source="ncithesaurus:Basilic_Vein"} xref: Wikipedia:Basilic_vein is_a: UBERON:0003515 ! forelimb blood vessel is_a: UBERON:0035550 ! superficial vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png" xsd:anyURI property_value: taxon_notes "It originates on the medial (ulnar) side of the dorsal venous network of the manus, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture." xsd:string {source="WP,unvetted"} [Term] id: UBERON:0001412 name: common palmar digital vein comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. subset: human_reference_atlas synonym: "proximal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins] xref: EMAPA:37222 {source="MA:th"} xref: FMA:22923 xref: MA:0002121 is_a: UBERON:0004563 ! forelimb digital vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001413 name: brachial vein def: "A vein that accompanies the brachial artery between the shoulder and the elbow." [UBERON:cjm] subset: human_reference_atlas subset: uberon_slim xref: AAO:0010512 xref: EMAPA:37445 {source="MA:th"} xref: FMA:22934 xref: galen:BrachialVein xref: MA:0002087 xref: NCIT:C12883 xref: SCTID:181390006 xref: UMLS:C0226812 {source="ncithesaurus:Brachial_Vein"} xref: Wikipedia:Brachial_vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png" xsd:anyURI property_value: external_definition "Vein which collects blood from the forelimb and drains into the subclavian vein.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010512", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001414 name: median basilic vein def: "A vein between the biceps and pronator radii teres muscles that unites with the common ulnar vein to form the basilic vein within the forearm." [ncithesaurus:Median_Basilic_Vein] subset: human_reference_atlas subset: uberon_slim synonym: "medial antecubital vein" RELATED [Wikipedia:Median_cubital_vein] synonym: "median cubital" RELATED [Wikipedia:Median_cubital_vein] synonym: "median cubital vein" EXACT [MA:0002176, Wikipedia:Median_cubital_vein] synonym: "vena mediana cubiti" RELATED OMO:0003011 [Wikipedia:Median_cubital_vein] xref: EMAPA:37173 {source="MA:th"} xref: FMA:22963 xref: MA:0002176 xref: NCIT:C33070 xref: SCTID:181392003 xref: SCTID:368496000 xref: UMLS:C0226807 xref: Wikipedia:Median_cubital_vein is_a: UBERON:0001411 ! basilic vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png" xsd:anyURI property_value: editor_note "Merged median cubital and basilic veins on basis of wikipedia synonym - needs verificied" xsd:string [Term] id: UBERON:0001415 name: skin of pelvis def: "A zone of skin that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] synonym: "pelvic skin" EXACT [] synonym: "pelvis skin" EXACT [] synonym: "pelvis zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of pelvis" EXACT [OBOL:automatic] xref: EMAPA:37282 {source="MA:th"} xref: FMA:22984 xref: MA:0000546 xref: SCTID:181517009 is_a: UBERON:0003836 ! abdominal segment skin relationship: part_of UBERON:0002355 ! pelvic region of trunk [Term] id: UBERON:0001416 name: skin of abdomen def: "A zone of skin that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] subset: efo_slim subset: pheno_slim synonym: "abdomen skin" EXACT [] synonym: "abdomen zone of skin" EXACT [OBOL:automatic] synonym: "abdominal skin" EXACT [] synonym: "skin of abdomen proper" EXACT [FMA:22988] synonym: "zone of skin of abdomen" EXACT [OBOL:automatic] xref: EFO:0000214 xref: FMA:22988 xref: FMA:23000 xref: MA:0000523 xref: NCIT:C52758 xref: SCTID:361707007 xref: UMLS:C0222166 {source="ncithesaurus:Abdominal_Skin"} is_a: UBERON:0003836 ! abdominal segment skin relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0001417 name: skin of neck def: "A zone of skin that is part of a neck [Automatically generated definition]." [OBOL:automatic] synonym: "neck (volume) zone of skin" EXACT [OBOL:automatic] synonym: "neck skin" EXACT [] synonym: "neck zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of neck" EXACT [OBOL:automatic] synonym: "zone of skin of neck (volume)" EXACT [OBOL:automatic] xref: EMAPA:37277 {source="MA:th"} xref: FMA:23021 xref: FMA:23022 xref: MA:0000590 xref: NCIT:C52756 xref: SCTID:361705004 xref: UMLS:C0205030 {source="ncithesaurus:Neck_Skin"} is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0001418 name: skin of thorax def: "A zone of skin that is part of a thorax [Automatically generated definition]." [OBOL:automatic] synonym: "thoracic skin" EXACT [] synonym: "thorax skin" EXACT [] synonym: "thorax zone of skin" EXACT [OBOL:automatic] synonym: "upper body skin" RELATED [] synonym: "zone of skin of thorax" EXACT [OBOL:automatic] xref: EMAPA:37765 {source="MA:th"} xref: FMA:23028 xref: FMA:23029 xref: MA:0000564 xref: SCTID:281723000 is_a: UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0001419 name: skin of limb def: "A zone of skin that is part of a limb [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "limb skin" EXACT [] synonym: "limb zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of limb" EXACT [OBOL:automatic] xref: EMAPA:32726 xref: FMA:23100 xref: MA:0000694 xref: NCIT:C53276 xref: SCTID:314403009 xref: UMLS:C1282135 {source="ncithesaurus:Skin_of_the_Extremity"} is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0001420 name: subscapular vein def: "A vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97509] subset: human_reference_atlas synonym: "vena subscapularis" EXACT OMO:0003011 [] xref: EMAPA:37190 {source="MA:th"} xref: FMA:23113 xref: MA:0002224 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001421 name: pectoral girdle region def: "An organism subdivision that includes the pectoral girdle skeleton and associated soft tissue. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: There are only two instances in an organism, right and left pectoral girdle regions." [FMA:23217, https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cingulum membri superioris" EXACT OMO:0003011 [FMA:23217, FMA:TA] synonym: "cingulum membri superioris" NARROW [FMA:TA] synonym: "girdle - pectoral" EXACT [] synonym: "pectoral girdle" RELATED [] synonym: "pectoral region" RELATED [] synonym: "shoulder girdle" NARROW [FMA:23217] synonym: "upper limb girdle" NARROW [FMA:23217] xref: EMAPA:37856 {source="MA:th"} xref: FMA:23217 xref: galen:ShoulderGirdle xref: SCTID:229759004 xref: VSAO:0000305 is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure relationship: mutually_spatially_disjoint_with UBERON:0001271 ! pelvic girdle region relationship: part_of UBERON:0010708 ! pectoral complex property_value: curator_notes "this class describes the organism subdivision, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831)." xsd:string property_value: external_comment "Note that this class describes the central subdivision of the pectoral girdle complex, NOT the skeleton within.[VSAO]" xsd:string {date_retrieved="2012-09-06", external_class="VSAO:0000305", ontology="VSAO", source="Curator"} property_value: external_definition "An organism subdivision that includes the pectoral girdle skeleton. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). There is only one instance of the pectoral girdle region per organism.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000305", ontology="VSAO", source="https://orcid.org/0000-0002-6601-2165"} [Term] id: UBERON:0001422 name: facial lymphatic vessel def: "A lymphatic vessel that is part of a face [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "buccal lymphatic vessel" EXACT [] synonym: "face lymph vessel" EXACT [OBOL:automatic] synonym: "face lymphatic vessel" EXACT [OBOL:automatic] synonym: "FL" RELATED [] synonym: "lymph vessel of face" EXACT [OBOL:automatic] synonym: "lymphatic vessel of face" EXACT [OBOL:automatic] xref: FMA:233946 xref: TAO:0005108 xref: ZFA:0005108 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0011363 ! cranial lymph vasculature [Term] id: UBERON:0001423 name: radius bone def: "The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] comment: Due to the presence of the radius in Tetrpodomorph fish this element is not inherently linked to the presence of digits or flexor musculature. The corresponding bone in the posterior fin/limb is the tibia.[Phenoscape]. In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "radius" EXACT [MA:0001357] xref: AAO:0000788 xref: CALOHA:TS-2199 xref: EMAPA:19103 xref: FMA:23463 xref: GAID:185 xref: galen:Radius xref: MA:0001357 xref: MESH:D011884 xref: NCIT:C12777 xref: SCTID:181940002 xref: UMLS:C0034627 {source="ncithesaurus:Radius_Bone"} xref: VSAO:0005012 xref: Wikipedia:Radius_(bone) is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0015001 ! radius endochondral element relationship: develops_from UBERON:0006286 {evidence="definitional"} ! radius cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000788", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001424 name: ulna def: "The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] comment: The corresponding bone in the posterior fin/limb is the fibula. subset: human_reference_atlas subset: pheno_slim subset: uberon_slim xref: AAO:0000789 xref: EMAPA:19104 xref: FMA:23466 xref: GAID:188 xref: galen:Ulna xref: MA:0001358 xref: MESH:D014457 xref: NCIT:C12809 xref: SCTID:181948009 xref: UMLS:C0041600 {source="ncithesaurus:Ulna"} xref: VSAO:0005013 xref: Wikipedia:Ulna is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0015003 ! ulna endochondral element relationship: develops_from UBERON:0006306 {evidence="definitional"} ! ulna cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg" xsd:anyURI property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000789", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "ulnar" xsd:string [Term] id: UBERON:0001425 name: pectoral lymphatic vessel subset: vertebrate_core synonym: "PL" RELATED OMO:0003000 [] xref: FMA:234865 xref: TAO:0005107 xref: ZFA:0005107 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0001421 ! pectoral girdle region [Term] id: UBERON:0001426 name: jugular lymphatic vessel subset: vertebrate_core synonym: "JL" RELATED OMO:0003000 [] synonym: "JLV" BROAD OMO:0003000 [ZFA:0005109] xref: FMA:234908 xref: TAO:0005109 xref: ZFA:0005109 is_a: UBERON:0001473 ! lymphatic vessel relationship: develops_from UBERON:0011765 ! jugular lymph sac [Term] id: UBERON:0001427 name: radiale def: "Endochondral proximal carpal bone articulating with the radius." [https://github.com/obophenotype/uberon/issues/112, UBERON:mah] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "navicular bone of hand" EXACT [] synonym: "navicular bone of manus" EXACT [] synonym: "navicular of hand" RELATED [] synonym: "navicular of manus" EXACT [] synonym: "os carpi radiale" EXACT [] synonym: "os naviculare manus" EXACT [Wikipedia:Scaphoid_bone] synonym: "os scaphoideum" EXACT [Wikipedia:Scaphoid_bone] synonym: "radial carpal bone" EXACT [] synonym: "scaphoid" EXACT [MA:0002555, NCBITaxon:40674, Wikipedia:Scaphoid] synonym: "scaphoid bone" EXACT [] synonym: "scaphoideum" EXACT [Wikipedia:Scaphoid_bone] xref: AAO:0000790 xref: EMAPA:37660 {source="MA:th"} xref: FMA:23709 xref: GAID:180 xref: galen:Scaphoid xref: MA:0002555 xref: MESH:D021361 xref: NCIT:C12854 xref: SCTID:181958008 xref: UMLS:C0223724 {source="ncithesaurus:Scaphoid_Bone"} xref: Wikipedia:Scaphoid is_a: UBERON:0001480 ! proximal carpal bone relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: editor_note "TODO - check AAO placement; in rodents this is fused with the lunate to make the scapholunate" xsd:string property_value: external_definition "One of two element that constitute the basal row of carpals. It articulates proximally with the radius, mesially with the ulnare (or pars intermedia of the ulnare when the ulnare is fused to the intermedium) and distally with the centrale (also recognized by some authors as element Y). This element originates from one or two condensation centers. Occasionally it may fuse to carpal 5(4), the ulnare, or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000790", ontology="AAO", source="AAO:LAP"} property_value: external_definition "the bone of the hand located at the radial side of the carpus and which articulates with the radius, trapezium, trapezoideum, capitate, and lunate bones" xsd:string {source="MP:0010775,MGI:llw2"} property_value: terminology_notes "In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius[WP]" xsd:string [Term] id: UBERON:0001428 name: intermedium def: "Endochondral carpal bone articulating with the ulnare and the radiale." [https://github.com/obophenotype/uberon/issues/113, UBERON:mah] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "intermediate carpal bone" RELATED [] synonym: "intermedium" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "lunar" EXACT [VSAO:0005040] synonym: "lunate" EXACT SENSU [MA:0002556, NCBITaxon:40674] synonym: "lunate bone" EXACT [] synonym: "os carpi intermedium" EXACT [] synonym: "os lunatum" EXACT OMO:0003011 [VSAO:0005040] synonym: "os lunatum" RELATED OMO:0003011 [Wikipedia:Lunate_bone] synonym: "semilunar" RELATED [] synonym: "semilunar bone" EXACT [] synonym: "semilunate" RELATED [] xref: EMAPA:37659 {source="MA:th"} xref: FMA:23712 xref: GAID:181 xref: galen:Lunate xref: MA:0002556 xref: MESH:D012667 xref: NCIT:C12786 xref: SCTID:181959000 xref: UMLS:C0036624 {source="ncithesaurus:Lunate_Bone"} xref: VSAO:0005040 xref: Wikipedia:Lunate_bone is_a: UBERON:0001480 {source="FMA"} ! proximal carpal bone relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: taxon_notes "articulating with the ulnare and the radiale[VSAO]. human articulations: radius proximally capitate and hamate distally scaphoid laterally triangular medially" xsd:string [Term] id: UBERON:0001429 name: pisiform def: "A laterally positioned sesamoid bone found in close proximity with and occasionally fused to the ulnare." [https://github.com/obophenotype/uberon/issues/116, PHENOSCAPE:ad] subset: human_reference_atlas subset: uberon_slim synonym: "accessory carpal bone" RELATED [MA:0001339] synonym: "os pisiforme" RELATED OMO:0003011 [Wikipedia:Pisiform_bone] synonym: "pisiform bone" EXACT [FMA:23718] xref: EMAPA:36165 xref: FMA:23718 xref: galen:Pisiform xref: MA:0001339 xref: NCIT:C12855 xref: SCTID:181966004 xref: SCTID:9181003 xref: UMLS:C0223729 {source="ncithesaurus:Pisiform_Bone"} xref: Wikipedia:Pisiform_bone is_a: UBERON:0001480 {source="FMA", source="MA"} ! proximal carpal bone is_a: UBERON:0007997 ! sesamoid bone of manus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: editor_note "check: accessory carpal" xsd:string [Term] id: UBERON:0001430 name: distal carpal bone 1 subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "carpal 1" RELATED [AAO:0010634] synonym: "distal carpal 1" EXACT [VSAO:0005043] synonym: "greater multangular" RELATED [] synonym: "greater multangular bone" EXACT [] synonym: "greater multiangular" RELATED [MA:0001340] synonym: "hand distal carpal bone 1" RELATED [MA:0001340] synonym: "manus distal carpal bone 1" RELATED [] synonym: "os trapezium" EXACT [VSAO:0005043] synonym: "trapezial bone" EXACT [FMA:23721] synonym: "trapezium" EXACT [VSAO:0005043] synonym: "trapezium bone" EXACT [FMA:23721] xref: AAO:0010634 xref: EMAPA:36173 xref: FMA:23721 xref: galen:Trapezium xref: MA:0001340 xref: NCIT:C12857 xref: SCTID:361780007 xref: UMLS:C0223736 {source="ncithesaurus:Trapezial_Bone"} xref: VSAO:0005043 xref: Wikipedia:Trapezium_(bone) is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element relationship: develops_from UBERON:0015085 ! distal carpal bone 1 cartilage relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "located between radiale and first metacarpal[VSAO]. in humans - The capitate articulates with 1st metacarpal distally, scaphoid proximally, trapezoid medially, 2nd metacarpal medially" xsd:string {source="WP"} [Term] id: UBERON:0001431 name: distal carpal bone 2 subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "carpal 2" RELATED [AAO:0000848] synonym: "distal carpal 2" EXACT [VSAO:0005044] synonym: "hand distal carpal bone 2" RELATED [MA:0001341] synonym: "lesser multangular" RELATED [] synonym: "lesser multangular bone" EXACT [FMA:23724] synonym: "lesser multiangular" RELATED [MA:0001341] synonym: "manus distal carpal bone 2" RELATED [] synonym: "os trapezoideum" EXACT [VSAO:0005044] synonym: "trapezoid" EXACT [VSAO:0005044] synonym: "trapezoid bone" EXACT [FMA:23724] xref: AAO:0000848 xref: EMAPA:36174 xref: FMA:23724 xref: galen:Trapezoid xref: MA:0001341 xref: NCIT:C12859 xref: SCTID:361781006 xref: UMLS:C0223741 {source="ncithesaurus:Trapezoid_Bone"} xref: VSAO:0005044 xref: Wikipedia:Trapezoid_bone is_a: UBERON:0001481 ! distal carpal bone is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element relationship: develops_from UBERON:0015088 ! distal carpal bone 2 cartilage relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000848", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The trapezoid bone (lesser multangular bone) is a carpal bone in tetrapods, including humans. It is the smallest bone in the distal row. It may be known by its wedge-shaped form, the broad end of the wedge constituting the dorsal, the narrow end the palmar surface; and by its having four articular facets touching each other, and separated by sharp edges. It is homologous with the 'second distal carpal' of reptiles and amphibians. The etymology derives from the Greek trapezion which means 'irregular quadrilateral,' from tra- 'four' and peza 'foot' or 'edge. ' Literally, 'a little table' from trapeza meaning 'table' and -oeides 'shaped.[Wikipedia:Trapezoid_bone]" xsd:string {source="Wikipedia:Trapezoid_bone"} property_value: taxon_notes "located in the distal part of the carpus and articulating with the second metacarpal, the distal carpals 1 and 2 and the radiale.[VSAO] in humans - The capitate articulates with 2nd metacarpal distally, scaphoid proximally, trapezium medially, capitate medially[WP] Amphibians: Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2)" xsd:string {source="AAO"} [Term] id: UBERON:0001432 name: distal carpal bone 3 subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "capitate" EXACT [MA:0001342] synonym: "capitate bone" EXACT [FMA:23727] synonym: "carpal 3" RELATED [AAO:0000849] synonym: "distal carpal 3" EXACT [VSAO:0005045] synonym: "hand distal carpal bone 3" RELATED [MA:0001342] synonym: "magnum" RELATED [VSAO:0005045] synonym: "os capitatum" RELATED [Wikipedia:Capitate_bone] synonym: "os magnum" RELATED [] synonym: "os magnum (carpus)" EXACT [FMA:23727] xref: AAO:0000849 xref: EMAPA:36169 xref: FMA:23727 xref: galen:Capitate xref: MA:0001342 xref: NCIT:C12856 xref: SCTID:181964001 xref: UMLS:C0223733 {source="ncithesaurus:Capitate_Bone"} xref: VSAO:0005045 xref: Wikipedia:Capitate_bone is_a: UBERON:0001481 {source="FMA", source="palaeos"} ! distal carpal bone is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element relationship: develops_from UBERON:0015091 ! distal carpal bone 3 cartilage relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: external_definition "Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000849", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "medially located and articulates with metacarpals 2-4, distal carpal 5 and the intermedium[VSAO] In the human hand, the capitate bone is the largest of the carpal bones, and occupies the center of the wrist - The capitate articulates with seven bones: the scaphoid and lunate proximally, the second metacarpal, third metacarpal, and fourth metacarpal distally, the lesser multangular on the radial side, and the hamate on the ulnar side" xsd:string {source="WP"} [Term] id: UBERON:0001433 name: distal carpal bone 4 subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "carpal 4" RELATED [AAO:0000850] synonym: "distal carpal 4" EXACT [VSAO:0005046] synonym: "hamate" EXACT [MA:0001343] synonym: "hamate bone" EXACT [FMA:23730] synonym: "hand distal carpal bone 4" RELATED [MA:0001343] synonym: "os hamatum" RELATED OMO:0003011 [VSAO:0005046, Wikipedia:Hamate_bone] synonym: "unciform" RELATED [MA:0001343] synonym: "unciform bone" EXACT [FMA:23730] synonym: "uncinate" RELATED [MA:0001343] xref: AAO:0000850 xref: EMAPA:36172 xref: FMA:23730 xref: galen:Hamate xref: MA:0001343 xref: NCIT:C12860 xref: SCTID:181967008 xref: UMLS:C0560737 {source="ncithesaurus:Hamate_Bone"} xref: VSAO:0005046 xref: Wikipedia:Hamate_bone is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element relationship: develops_from UBERON:0015094 ! distal carpal bone 4 cartilage relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000850", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "articulates with the lunar, distal carpal 3, the ulnare as well as metacarpals 4 and 5.[VSAO]. In the human hand the lunate proximally the fourth and fifth metacarpals distally the triangular medially the capitate laterally[WP] Amphibians: Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements" xsd:string {source="AAO"} [Term] id: UBERON:0001434 name: skeletal system def: "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000027] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "set of all bones and joints" NARROW SENSU [] synonym: "skeleton system" EXACT [] synonym: "Skelettsystem" RELATED [BTO:0001486] xref: AAO:0000566 xref: BTO:0001486 xref: CALOHA:TS-1320 xref: EFO:0000806 xref: EHDAA2:0003168 xref: EMAPA:35773 xref: FMA:23881 xref: MA:0000018 xref: NCIT:C12788 xref: TAO:0000434 xref: UMLS:C0037253 {source="ncithesaurus:Skeletal_System"} xref: VHOG:0001254 xref: VSAO:0000027 xref: XAO:0003060 xref: ZFA:0000434 is_a: UBERON:0011216 ! organ system subdivision relationship: mutually_spatially_disjoint_with UBERON:0001016 ! nervous system relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000434", ontology="TAO", source="TAO:wd"} property_value: external_definition "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000027", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: external_definition "System that provides physical support to the organism.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000566", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates" xsd:string {external_ontology="GO"} property_value: has_relational_adjective "skeletal" xsd:string property_value: homology_notes "By taking a holistic approach, integration of the evidence from molecular and developmental features of model organisms, the phylogenetic distribution in the 'new animal phylogeny' and the earliest fossilized remains of mineralized animal skeletons suggests independent origins of the skeleton at the phylum level.[debated][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001254", ontology="VHOG", source="DOI:10.1159/000324245 Donoghue PCJ, Sansom IJ, Origin and early evolution of vertebrate skeletonization. Microscopy research and technique (2002)", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/The-skeletal-system" xsd:anyURI [Term] id: UBERON:0001435 name: carpal bone def: "A bone that is part of the carpal skeleton. Examples: scaphoid, lunate, capitate[cjm]." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "bone of carpus" EXACT [] synonym: "carpal" EXACT [PHENOSCAPE:ad] synonym: "carpal skeleton bone" EXACT [] synonym: "carpus bone" RELATED [EMAPA:25056] xref: EMAPA:25056 xref: FMA:23889 xref: GAID:179 xref: galen:CarpalBone xref: MA:0000296 xref: MESH:D002348 xref: NCIT:C12688 xref: SCTID:83936004 xref: UMLS:C0007285 {source="ncithesaurus:Carpal_Bone"} xref: Wikipedia:Carpus is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! manus bone is_a: UBERON:0015049 ! carpus endochondral element relationship: develops_from UBERON:0006213 ! carpus cartilage element property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg" xsd:anyURI property_value: taxon_notes "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist." xsd:string {source="Wikipedia:Carpus"} [Term] id: UBERON:0001436 name: phalanx of manus def: "A phalanx that is part of a forelimb autopod[Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Phalanges_of_the_hand] subset: pheno_slim synonym: "bone of finger" RELATED [FMA:23914] synonym: "digital bone of manus" NARROW [OBOL:automatic] synonym: "digitus manus phalanx" EXACT [OBOL:automatic] synonym: "finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit phalanx" EXACT [OBOL:automatic] synonym: "hand phalanx" EXACT [MA:0000306] synonym: "manual phalanx" EXACT [] synonym: "phalanges of fore digit" RELATED OMO:0003004 [AAO:0000947] synonym: "phalanx of digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of digitus manus" EXACT [OBOL:automatic] synonym: "phalanx of finger" EXACT [FMA:23914] synonym: "phalanx of fore digit" EXACT [] synonym: "phalanx of hand" EXACT [] synonym: "phalanx of hand digit" EXACT [OBOL:automatic] synonym: "phalanx of manual digit" EXACT [] xref: AAO:0000947 xref: EMAPA:32650 xref: FMA:23914 xref: http://mbe.oxfordjournals.org/content/26/3/613/F1.large.jpg xref: MA:0000306 xref: NCIT:C52771 xref: SCTID:181976001 xref: SCTID:361100001 xref: UMLS:C0223792 {source="ncithesaurus:Hand_Phalanx"} xref: Wikipedia:Phalanges_of_the_hand is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! manual digit bone is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage element property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the four digits of the manus. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the manus, in a medial to lateral sequence, is 2-2-3-3.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000947", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001437 name: epiphysis def: "The head of a long bone that articulates with a neighboring skeletal element and is separated from the shaft by the epiphyseal plate until bone growth stops. At that time, the plate disappears and the head and shaft are united[MESH,modified]." [http://orcid.org/0000-0002-6601-2165, MESH:A02.835.232.251] subset: pheno_slim subset: uberon_slim synonym: "bone epiphysis" EXACT [] synonym: "end of long bone" EXACT [] synonym: "epiphyses" EXACT OMO:0003004 [] synonym: "long bone epiphysis" EXACT [] xref: AAO:0000742 xref: BTO:0000413 xref: EMAPA:35508 xref: FMA:24012 xref: MA:0001362 xref: MESH:D004838 xref: NCIT:C32529 xref: NCIT:C52722 xref: SCTID:244701002 xref: UMLS:C1708734 {source="ncithesaurus:Long_Bone_Epiphysis"} xref: Wikipedia:Epiphysis is_a: UBERON:0005055 ! zone of long bone relationship: seeAlso UBERON:0006776 ! annular epiphysis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg" xsd:anyURI property_value: external_definition "Cartilaginous expansion at the distal end of an anterior rib or transverse process that serves for the attachment of muscles suspending the pectoral girdle to the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000742", ontology="AAO", source="AAO:Pugener_2002"} property_value: external_definition "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur." xsd:string {source="FMA:24012"} property_value: has_relational_adjective "epiphyseal" xsd:string property_value: has_relational_adjective "epiphysial" xsd:string [Term] id: UBERON:0001438 name: metaphysis def: "Zone of long bone that is between the epiphysis and diaphysis. Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]." [FMA:24014, Wikipedia:Metaphysis] subset: pheno_slim subset: uberon_slim synonym: "diaphyseal end of long bone" EXACT [] synonym: "long bone metaphysis" EXACT [] synonym: "metaphyses" EXACT OMO:0003004 [] xref: EMAPA:35509 xref: FMA:24014 xref: MA:0001363 xref: NCIT:C52723 xref: SCTID:304581004 xref: UMLS:C0222671 {source="ncithesaurus:Metaphysis"} xref: Wikipedia:Metaphysis is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004769 ! diaphysis property_value: editor_note "todo - decide - adjacent to or containing epiphyseal plate? AO Notes: FMA the metaphysis is part of the diaphysis, but not in MA." xsd:string property_value: external_definition "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]" xsd:string {source="FMA:24014"} [Term] id: UBERON:0001439 name: compact bone tissue def: "The outer layers of solid, hard bone that covers spongy bone; consists of parallel osteons containing mineral deposits and interstitial lamellae." [ISBN:0-683-40008-8, MGI:hdene, MP:0003797] comment: MP distinguishes compact/cortical bone. in other AOs they are syns subset: pheno_slim subset: uberon_slim synonym: "bony cortex" EXACT [HP:0002753] synonym: "compact bone" EXACT [MA:0001461] synonym: "compact bone tissue" EXACT [] synonym: "cortical bone" EXACT [] synonym: "cortical bone tissue" EXACT [] synonym: "cortical region of bone" EXACT [] synonym: "substantia compacta" EXACT OMO:0003011 [FMA:24018, FMA:TA] synonym: "substantia compacta (pars ossea)" EXACT [] synonym: "substantia corticalis" EXACT OMO:0003011 [FMA:24018, FMA:TA] xref: EMAPA:35250 xref: FMA:24018 xref: galen:CorticalBone xref: MA:0001461 xref: MESH:D000071538 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C52714 xref: SCTID:361728003 xref: UMLS:C0222661 {source="ncithesaurus:Cortical_Bone"} xref: Wikipedia:Compact_bone is_a: UBERON:0002481 ! bone tissue relationship: part_of UBERON:0002482 ! lamellar bone property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI [Term] id: UBERON:0001440 name: forelimb skeleton def: "The collection of all skeletal elements in a free forelimb region. Excludes the pectoral girdle." [https://orcid.org/0000-0002-6601-2165] synonym: "bones of upper limb" EXACT [] synonym: "fore limb skeleton" EXACT [] synonym: "forelimb skeleton" EXACT [VHOG:0001256] synonym: "free upper limb skeleton" EXACT [FMA:24142] synonym: "ossa membri superioris" EXACT OMO:0003011 [FMA:24139, FMA:TA] synonym: "pectoral limb skeleton" EXACT [] synonym: "set of bones of upper limb" EXACT [] synonym: "skeleton of forelimb" EXACT [] synonym: "skeleton of free upper limb" EXACT [FMA:24142] synonym: "skeleton of pectoral limb" EXACT [] synonym: "skeleton of upper limb" EXACT [FMA:24139] synonym: "upper limb skeleton" EXACT [EHDAA2:0002222] synonym: "wing skeleton" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: AAO:0000202 xref: EHDAA2:0002222 xref: EMAPA:32623 xref: FMA:24142 xref: VHOG:0001256 xref: VSAO:0000151 xref: XAO:0003061 is_a: UBERON:0004381 ! skeleton of limb is_a: UBERON:0007272 ! pectoral appendage skeleton relationship: has_no_connections_with UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0002102 {source="FMA"} ! forelimb relationship: part_of UBERON:0012475 ! skeleton of pectoral complex property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000202", ontology="AAO"} property_value: editor_note "TODO - find a home for: FMA:24139 ! skeleton of upper limb" xsd:string property_value: external_definition "Skeletal structure of the paired, anterior appendages.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000202", ontology="AAO", source="AAO:LAP"} property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001256", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001441 name: hindlimb skeleton def: "Subdivision of skeleton consisting of all skeletal elements in an hindlimb region." [https://orcid.org/0000-0002-6601-2165] comment: TOOD - find a home for: FMA:24140 subset: uberon_slim synonym: "bones of lower limb" EXACT [] synonym: "free lower limb skeleton" EXACT [FMA:24144] synonym: "hind limb skeleton" EXACT [XAO:0003062] synonym: "hind-limb skeleton" EXACT [VSAO:0000152] synonym: "hindlimb skeleton" EXACT [VHOG:0001255] synonym: "lower limb skeleton" EXACT [] synonym: "ossa membri inferioris" EXACT OMO:0003011 [FMA:24140, FMA:TA] synonym: "set of bones of lower limb" EXACT [] synonym: "skeleton of free lower limb" EXACT [FMA:24144] synonym: "skeleton of lower limb" EXACT [FMA:24140] xref: AAO:0000217 xref: EHDAA2:0002226 xref: EMAPA:32633 xref: FMA:24144 xref: VHOG:0001255 xref: VSAO:0000152 xref: XAO:0003062 is_a: UBERON:0004381 ! skeleton of limb is_a: UBERON:0007273 ! pelvic appendage skeleton relationship: part_of UBERON:0002103 {source="FMA"} ! hindlimb relationship: part_of UBERON:0012476 ! skeleton of pelvic complex property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000217", ontology="AAO"} property_value: external_definition "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000217", ontology="AAO", source="AAO:LAP"} property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001255", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001442 name: skeleton of manus def: "Subdivision of skeleton that is the collection of all skeletal elements in a manus, which is the distal section of the anterior forelimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the wrist, palm, and fingers)[Phenoscape]." [https://github.com/obophenotype/uberon/issues/74, https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:MAH] comment: here 'manus' includes both the wrist region, metatarsal region and acropodial region subset: pheno_slim synonym: "anterior autopodium" RELATED [VSAO:0005020, VSAO:NI] synonym: "anterior autopodium skeleton" EXACT [] synonym: "bones of hand" EXACT [FMA:24159] synonym: "fore autopod skeleton" EXACT [] synonym: "forelimb autopod skeleton" EXACT [] synonym: "hand region skeleton" EXACT [EHDAA2:0002227] synonym: "hand skeleton" EXACT [FMA:24159] synonym: "manual skeleton" EXACT [] synonym: "manus" RELATED [VSAO:0005020, VSAO:NI] synonym: "manus skeleton" EXACT [] synonym: "ossa manus" EXACT OMO:0003011 [FMA:24159, FMA:TA] synonym: "set of bones of hand" EXACT [FMA:24159] synonym: "skeleton of hand" EXACT [FMA:24159] xref: EHDAA2:0002227 xref: EMAPA:32643 xref: FMA:24159 xref: VSAO:0005020 is_a: UBERON:0006717 ! autopodial skeleton relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton relationship: part_of UBERON:0002398 ! manus property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001443 name: chest def: "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "anterolateral part of thorax" EXACT [] synonym: "front of thorax" EXACT [] synonym: "pectus" EXACT OMO:0003011 [FMA:24816, FMA:TA] synonym: "thoracic body wall" RELATED [MA:0000031] synonym: "thorax" RELATED OMO:0003011 [FMA:9576, Wikipedia:Chest] synonym: "ventral part of thoracic region" EXACT [] xref: BTO:0001368 xref: CALOHA:TS-1039 xref: EFO:0000965 xref: EMAPA:37232 {source="MA:th"} xref: EV:0100010 xref: FMA:9576 xref: GAID:91 xref: galen:Chest xref: galen:Thorax xref: MA:0000031 xref: MAT:0000295 xref: MESH:D013909 xref: MIAA:0000295 xref: NCIT:C12799 xref: NCIT:C25389 xref: UMLS:C0817096 {source="ncithesaurus:Thorax"} xref: UMLS:C1527391 {source="ncithesaurus:Chest"} xref: Wikipedia:Chest is_a: UBERON:0009569 {source="FMA-modified"} ! subdivision of trunk relationship: mutually_spatially_disjoint_with UBERON:0000916 ! abdomen relationship: part_of UBERON:0000915 {source="FMA", source="MA"} ! thoracic segment of trunk property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg" xsd:anyURI property_value: editor_note "FMA:24216 present in FMA1, but gone in subsequent versions" xsd:string property_value: has_relational_adjective "pectoral" xsd:string property_value: has_relational_adjective "thoracic" xsd:string [Term] id: UBERON:0001444 name: subdivision of head subset: non_informative synonym: "head region" RELATED [] synonym: "head subdivision" EXACT [] synonym: "region of head" RELATED [] xref: FMA:24218 xref: SCTID:123852005 xref: XAO:0000040 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0001445 name: skeleton of pes def: "Subdivision of skeleton that is the collection of all skeletal elements in a pes, which is the distal section of the posterior hindlimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the ankle, sole, and toes)[Phenoscape]." [https://github.com/obophenotype/uberon/issues/75, https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:MAH] comment: here 'pes' includes both the ankle region, metatarsals and acropodial region subset: pheno_slim synonym: "foot region skeleton" EXACT [EHDAA2:0002228] synonym: "foot skeleton" EXACT [FMA:24222] synonym: "pedal skeleton" EXACT [] synonym: "pes" RELATED INCONSISTENT [VSAO:0005021, VSAO:NI] synonym: "pes skeleton" EXACT [] synonym: "posterior autopodium" RELATED [VSAO:0005021, VSAO:NI] synonym: "posterior autopodium skeleton" EXACT [] synonym: "set of bones of foot" EXACT [FMA:24222] synonym: "skeleton of foot" EXACT [FMA:24222] xref: EHDAA2:0002228 xref: FMA:24222 xref: VSAO:0005021 is_a: UBERON:0006717 ! autopodial skeleton relationship: part_of UBERON:0001441 {source="EHDAA2"} ! hindlimb skeleton relationship: part_of UBERON:0002387 ! pes property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001446 name: fibula def: "The major postaxial endochondral bone in the posterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim xref: AAO:0000891 xref: BTO:0002346 xref: CALOHA:TS-2203 xref: EFO:0003052 xref: EMAPA:19141 xref: FMA:24479 xref: GAID:202 xref: galen:Fibula xref: MA:0001360 xref: MESH:D005360 xref: NCIT:C12718 xref: SCTID:302529003 xref: UMLS:C0016068 {source="ncithesaurus:Fibula"} xref: Wikipedia:Fibula is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone is_a: UBERON:0015013 ! fibula endochondral element relationship: develops_from UBERON:0010851 ! fibula cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Illu_lower_extremity.jpg" xsd:anyURI property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000891", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "fibular" xsd:string [Term] id: UBERON:0001447 name: tarsal bone def: "A bone that is part of the tarsal skeleton. Examples: calcaneus, talus, centralia." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "ankle bone" EXACT [FMA:24491] synonym: "bone of ankle" EXACT [FMA:24491] synonym: "bone of tarsal skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "bone of tarsus" EXACT [FMA:24491] synonym: "bony tarsus" RELATED [BTO:0002343] synonym: "hind mesopodium" RELATED [AAO:0000220] synonym: "ossa tarsalia" EXACT OMO:0003004 [FMA:71339, FMA:TA] synonym: "ossa tarsi" EXACT OMO:0003004 [FMA:71339, FMA:TA] synonym: "tarsal" RELATED [BTO:0002343] synonym: "tarsus osseus" RELATED [BTO:0002343] xref: BTO:0002343 xref: EMAPA:25072 xref: FMA:24491 xref: GAID:194 xref: galen:TarsalBone xref: MA:0000297 xref: MESH:D013639 xref: NCIT:C12796 xref: SCTID:108372004 xref: UMLS:C0039316 {source="ncithesaurus:Tarsal_Bone"} is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! pes bone is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010541 ! tarsus cartilage element property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg" xsd:anyURI property_value: taxon_notes "In primitive tetrapods, such as Trematops, the tarsus consists of three rows of bones. There are three proximal tarsals, the tibiale, intermedium, and fibulare, named for their points of articulation with the bones of the lower limb. These are followed by a second row of four bones, referred to as the centralia (singular: centrale), and then a row of five distal tarsals, each articulating with a single metatarsal. In the great majority of tetrapods, including all of those alive today, this simple pattern is modified by the loss and fusion of various of the bones.[3] In reptiles and mammals, there are normally just two proximal tarsals, the calcaneus (equivalent to the amphibian fibulare) and the talus (probably derived from a fusion of multiple bones). In mammals, including humans, the talus forms a hinge joint with the tibia, a feature especially well developed in the artiodactyls. The calcaneus is also modified, forming a heel for the attachment of the Achilles tendon. Neither of these adaptations is found in reptiles, which have a relatively simple structure to both bones.[3] The fifth distal tarsal disappears relatively early in evolution, with the remainder becoming the cuneiform and cuboid bones. Reptiles usually retain two centralia, while mammals typically have only one (the navicular).[3] In birds, the tarsus has disappeared, with the proximal tarsals having fused with the tibia, the centralia having disappeared, and the distal bones having fused with the metatarsals to form a single tarsometatarsus bone, effectively giving the leg a third segment" xsd:string {source="Wikipedia:Tarsus_(skeleton)"} [Term] id: UBERON:0001448 name: metatarsal bone def: "The metatarsus or metatarsal bones are a group of five long bones in the pes located between the tarsal bones of the hind- and mid-pes and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the manus. [WP,unvetted]." [Wikipedia:Metatarsal_bone] subset: pheno_slim subset: uberon_slim synonym: "metatarsal" EXACT [] synonym: "ossa metatarsalia" RELATED OMO:0003004 [BTO:0002347] synonym: "ossa metatarsi" RELATED [BTO:0002347] xref: BTO:0002347 xref: EMAPA:32940 xref: EMAPA:36159 xref: FMA:24492 xref: GAID:193 xref: galen:Metatarsal xref: MA:0000303 xref: MESH:D008682 xref: NCIT:C12752 xref: SCTID:302532000 xref: UMLS:C0025584 {source="ncithesaurus:Metatarsal_Bone"} xref: Wikipedia:Metatarsal_bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003821 {is_inferred="true"} ! metapodium bone is_a: UBERON:0012359 ! pedal digitopodium bone is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:0010545 ! metatarsus skeleton property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png" xsd:anyURI [Term] id: UBERON:0001449 name: phalanx of pes alt_id: UBERON:0004272 def: "A phalanx that is part of a hindlimb autopod[Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Phalanges_of_the_foot] subset: pheno_slim synonym: "bone of toe" RELATED [FMA:24493] synonym: "digital bone of pes" BROAD [OBOL:automatic] synonym: "digitus pedis phalanx" EXACT [OBOL:automatic] synonym: "foot digit phalanx" EXACT [OBOL:automatic] synonym: "foot phalanx" EXACT [MA:0000305] synonym: "pedal phalanx" EXACT [] synonym: "phalanges of hind digit" RELATED OMO:0003004 [AAO:0000930] synonym: "phalanx of digit of foot" EXACT [OBOL:automatic] synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic] synonym: "phalanx of foot digit" EXACT [OBOL:automatic] synonym: "phalanx of hind digit" EXACT [] synonym: "phalanx of pes" EXACT [] synonym: "phalanx of toe" EXACT [FMA:24493] synonym: "toe phalanx" EXACT [OBOL:automatic] xref: AAO:0000930 xref: EMAPA:32941 xref: FMA:24493 xref: MA:0000305 xref: NCIT:C52772 xref: ncithesaurus:Phalanx_of_the_Foot xref: SCTID:302533005 xref: UMLS:C0584876 {source="ncithesaurus:Foot_Phalanx"} xref: Wikipedia:Phalanges_of_the_foot is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! pedal digit bone is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage element property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the five digits of the pes. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the pes, in a medial to lateral sequence, is 2(1)-2-3-4(3)-3(2).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000930", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001450 name: calcaneus def: "The postaxial bone of the proximal tarsals series[Phenoscape]." [https://github.com/obophenotype/uberon/issues/72, PHENOSCAPE:mah] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "calcaneal bone" EXACT [BTO:0002355] synonym: "calcanei" RELATED OMO:0003004 [] synonym: "calcaneum" EXACT [MA:0001348] synonym: "calcaneus bone" EXACT [UBERON:cjm] synonym: "fibulare" RELATED [AAO:0000913, ISBN:0073040584, VSAO:0005016, Wikipedia:Calcaneus] synonym: "heel bone" RELATED [BTO:0002355] synonym: "os calcis" EXACT OMO:0003011 [FMA:24496] synonym: "os tarsi fibulare" RELATED [BTO:0002355] xref: BTO:0002355 xref: EMAPA:19134 xref: FMA:24496 xref: galen:Calcaneum xref: MA:0001348 xref: MESH:D002111 xref: NCIT:C32250 xref: SCTID:182099002 xref: UMLS:C0006655 {source="ncithesaurus:Calcaneum"} xref: VSAO:0005016 xref: Wikipedia:Calcaneus is_a: UBERON:0011679 ! proximal tarsal bone is_a: UBERON:0015014 ! calcaneum endochondral element relationship: develops_from UBERON:0010842 ! calcaneum cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG" xsd:anyURI property_value: has_relational_adjective "calcaneal" xsd:string property_value: taxon_notes "synonymous with the fibulare of basal tetrapods." xsd:string [Term] id: UBERON:0001451 name: navicular bone of pes def: "The oval-shaped tarsal bone found between the talus and the 3 cuneiform bones." [MGI:llw2, MP:0009727] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "central tarsal bone" RELATED [] synonym: "centrale" BROAD [] synonym: "centrale (hind)" EXACT [AAO:0000924] synonym: "navicular" EXACT [] synonym: "navicular bone of foot" EXACT [FMA:24499] synonym: "navicular of foot" EXACT [FMA:24499] synonym: "navicular of pes" EXACT [] synonym: "os naviculare" EXACT OMO:0003011 [FMA:24499, FMA:TA] synonym: "os naviculare" RELATED OMO:0003011 [Wikipedia:Navicular_bone] synonym: "os naviculare pedis" EXACT [BTO:0002356] synonym: "os tarsi centrale" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] xref: AAO:0000924 xref: BTO:0002356 xref: EMAPA:36180 xref: FMA:24499 xref: galen:Navicular xref: MA:0001349 xref: NCIT:C33162 xref: SCTID:182100005 xref: UMLS:C0223947 {source="ncithesaurus:Navicular_Bone"} xref: Wikipedia:Navicular_bone is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png" xsd:anyURI property_value: external_definition "Oval tarsal element that is located on the center of the mesopodium. It articulates with all other elements of the tarsus except tarsal 5.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000924", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "connections vary depending on species. AAO: Oval tarsal element that is located on the center of the mesopodium. It articulates with all other elements of the tarsus except tarsal 5. In humans: there is a cuboid instead of distal tarsal 4 and 5 - may articulate laterally with the cuboid" xsd:string {source="WP"} [Term] id: UBERON:0001452 name: distal tarsal bone 1 def: "Endochondral tarsal bone articulating with centralia and metatarsal 1." [VSAO:0005052, Wikipedia:Medial_cuneiform_bone] subset: human_reference_atlas subset: uberon_slim synonym: "1st cuneiform" RELATED [EMAPA:36176] synonym: "cuneiforme 1" EXACT [VSAO:0005052] synonym: "distal tarsal 1" RELATED [VSAO:0005052] synonym: "distal tarsal 1 bone" EXACT SYSTEMATIC [UBERON:cjm] synonym: "entocuneiforme" EXACT [VSAO:0005052] synonym: "first cuneiform" EXACT [Wikipedia:Medial_cuneiform_bone] synonym: "first cuneiform bone" EXACT [FMA:24518] synonym: "foot distal carpal bone 1" RELATED [] synonym: "medial cuneiform" EXACT [FMA:24518] synonym: "medial cuneiform bone" EXACT [FMA:24518] synonym: "os cuneiform primum" RELATED OMO:0003011 [Wikipedia:Medial_cuneiform_bone] synonym: "os cuneiforme mediale" EXACT OMO:0003011 [FMA:TA, NominaAnatomicaVeterinaria:2005] synonym: "os cuneiforme mediale" RELATED OMO:0003011 [Wikipedia:Medial_cuneiform_bone] synonym: "os cuneiforme primum" RELATED [BTO:0002360] synonym: "os tarsale I" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "ossa cuneiforme mediale" RELATED [BTO:0002360] synonym: "tarsal 1" EXACT [AAO:0000918] xref: AAO:0000918 xref: BTO:0002360 xref: EMAPA:36176 xref: FMA:24518 xref: galen:MedialCuneiform xref: http://palaeos.com/vertebrates/glossary/images/450x218xEctocuneiform.gif.pagespeed.ic.kaiuLYQELL.png xref: MA:0001352 xref: NCIT:C32840 xref: SCTID:182116007 xref: UMLS:C1512869 {source="ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005052 xref: Wikipedia:Medial_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element relationship: develops_from UBERON:0015103 ! distal tarsal bone 1 cartilage relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray290.png" xsd:anyURI property_value: external_definition "Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000918", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001453 name: distal tarsal bone 2 def: "Endochondral tarsal bone articulating with centralia and metatarsal 2." [VSAO:0005053, Wikipedia:Intermediate_cuneiform_bone] comment: The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted] subset: human_reference_atlas subset: uberon_slim synonym: "2nd cuneiform" RELATED [EMAPA:36177] synonym: "cuneiforme 2" EXACT [VSAO:0005053] synonym: "distal tarsal 2" RELATED [VSAO:0005053] synonym: "distal tarsal 2 bone" EXACT SYSTEMATIC [UBERON:cjm] synonym: "foot distal carpal bone 2" RELATED [] synonym: "intermediate cuneiform" EXACT [] synonym: "intermediate cuneiform bone" RELATED [FMA:24519] synonym: "mesocuneiforme" EXACT [VSAO:0005053] synonym: "middle cuneiform" EXACT [] synonym: "middle cuneiform bone of foot" EXACT [] synonym: "os cuneiforme intermedium" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os cuneiforme intermedium" RELATED OMO:0003011 [BTO:0002359, Wikipedia:Intermediate_cuneiform_bone] synonym: "os cuneiforme secundum" RELATED OMO:0003011 [BTO:0002359, Wikipedia:Intermediate_cuneiform_bone] synonym: "os tarsale II" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "second cuneiform bone" EXACT [] synonym: "second cuneiform bone of foot" EXACT [] synonym: "tarsal 2" EXACT [AAO:0000919] xref: AAO:0000919 xref: BTO:0002359 xref: EMAPA:36177 xref: FMA:24519 xref: galen:IntermediateCuneiform xref: MA:0001353 xref: NCIT:C33116 xref: SCTID:179512006 xref: UMLS:C1513292 {source="ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005053 xref: Wikipedia:Intermediate_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element relationship: develops_from UBERON:0015106 ! distal tarsal bone 2 cartilage relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png" xsd:anyURI property_value: external_definition "Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000919", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001454 name: distal tarsal bone 3 def: "Endochondral tarsal bone articulating with centralia and metatarsal 3." [VSAO:0005054, Wikipedia:Lateral_cuneiform_bone] comment: The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted] subset: human_reference_atlas subset: uberon_slim synonym: "3rd cuneiform" RELATED [EMAPA:36178] synonym: "cuneiforme 3" EXACT [VSAO:0005054] synonym: "distal tarsal 3" RELATED [VSAO:0005054] synonym: "distal tarsal 3 bone" EXACT SYSTEMATIC [UBERON:cjm] synonym: "ectocuneiforme" EXACT [VSAO:0005054] synonym: "external cuneiform" EXACT [Wikipedia:Lateral_cuneiform_bone] synonym: "external cuneiform bone of foot" EXACT [] synonym: "foor distal carpal bone 3" RELATED [] synonym: "lateral cuneiform" EXACT [] synonym: "lateral cuneiform bone" EXACT [FMA:24520] synonym: "os cuneiforme laterale" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os cuneiforme laterale" RELATED OMO:0003011 [Wikipedia:Lateral_cuneiform_bone] synonym: "os cuneiforme tertium" RELATED OMO:0003011 [Wikipedia:Lateral_cuneiform_bone] synonym: "os tarsale III" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "ossa cuneiforme laterale" RELATED [BTO:0002358] synonym: "tarsal 3" EXACT [AAO:0000920] synonym: "third cuneiform bone" EXACT [] xref: AAO:0000920 xref: BTO:0002358 xref: EMAPA:36178 xref: FMA:24520 xref: galen:LateralCuneiform xref: MA:0001354 xref: NCIT:C32554 xref: SCTID:182117003 xref: UMLS:C1517036 {source="ncithesaurus:External_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005054 xref: Wikipedia:Lateral_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element relationship: develops_from UBERON:0015109 ! distal tarsal bone 3 cartilage relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png" xsd:anyURI property_value: external_comment "In some types, the cuneiform is found as two or three bones, in which case the more anterior ('dorsal' in dorsal/plantar terminology) is the ectocuneiform, while the more posterior or plantar bones are the mesocuneiform and entocuneiform.[Palaeos]" xsd:string {date_retrieved="2012-09-17", source="http://palaeos.com/vertebrates/glossary/glossaryE.html"} property_value: external_definition "Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000920", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001455 name: cuboid bone def: "A tarsal bone that is formed from distal tarsals 4 and 5. [WP,modified]." [Wikipedia:Cuboid_bone] subset: human_reference_atlas subset: uberon_slim synonym: "cuboid" EXACT [] synonym: "cuboideum" RELATED [] synonym: "distal tarsal bones 4 and 5" RELATED [] synonym: "foot distal tarsal bone 4 and 5" RELATED [] synonym: "os cuboideum" RELATED OMO:0003011 [BTO:0002357, Wikipedia:Cuboid_bone] synonym: "os tarsale IV et V" RELATED OMO:0003011 [http://orcid.org/0000-0002-6601-2165] xref: BTO:0002357 xref: EMAPA:36175 xref: FMA:24527 xref: galen:Cuboid xref: MA:0001355 xref: NCIT:C32414 xref: SCTID:182101009 xref: UMLS:C0376381 {source="ncithesaurus:Cuboid_Bone"} xref: Wikipedia:Cuboid_bone is_a: UBERON:0010721 ! distal tarsal bone relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Gray274.png" xsd:anyURI property_value: terminology_notes "NominaAnatomicaVeterinaria uses os cuboideum as an official synonym for distal tarsal IV, but some sources also use this as the label for the human cuboid bone which is regarded to be formed from tarsals IV and V. We therefore decline to use exact syns in either case." xsd:string [Term] id: UBERON:0001456 name: face def: "A subdivision of the head that has as parts the layers deep to the surface of the anterior surface, including the mouth, eyes, and nose (when present). In vertebrates, this includes the facial skeleton and structures superficial to the facial skeleton (cheeks, mouth, eyeballs, skin of face, etc)." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "facia/facies" RELATED OMO:0003011 [Wikipedia:Face] synonym: "visage" RELATED [BTO:0003369] xref: BTO:0003369 xref: CALOHA:TS-2216 xref: EMAPA:32763 xref: FMA:24728 xref: GAID:64 xref: galen:Face xref: HAO:0000316 xref: MA:0002473 xref: MESH:D005145 xref: NCIT:C13071 xref: SCTID:302549007 xref: UMLS:C0015450 {source="ncithesaurus:Face"} xref: Wikipedia:Face is_a: UBERON:0001444 ! subdivision of head property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Mona_Lisa_headcrop.jpg" xsd:anyURI property_value: development_notes "The face develops from outward growth of tissue located rostral to the cranium & pharynx. The lower jaw and most of the upper jaw are formed by growth of the first pharyngeal (branchial) arch. The upper incisor region and the nose and forehead (frontal region) are formed from tissue located rostral to the neural tube (frontonasal prominence)" xsd:string {source="vanat.cvm.umn.edu/TFFlectPDFs/LectFaceDevelop.pdf"} property_value: external_definition "Subdivision of head which consists of the viscerocranium and all layers superficial to it. Examples: There is only one face." xsd:string {source="FMA:24728"} property_value: external_definition "The area that extends from the median ocellus to the oral foramen[HAO]." xsd:string {source="HAO:0000316", source="http://api.hymao.org/api/ref/67791", taxon="NCBITaxon:7399"} property_value: has_relational_adjective "facial" xsd:string [Term] id: UBERON:0001457 name: skin of eyelid def: "A zone of skin that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blepharon zone of skin" EXACT [OBOL:automatic] synonym: "eyelid skin" EXACT [] synonym: "eyelid zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of blepharon" EXACT [OBOL:automatic] synonym: "zone of skin of eyelid" EXACT [OBOL:automatic] xref: EMAPA:37536 {source="MA:th"} xref: FMA:24760 xref: MA:0001256 xref: NCIT:C52718 xref: SCTID:245947005 xref: UMLS:C0222088 {source="ncithesaurus:Eyelid_Skin"} is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001458 name: skin of lip def: "A zone of skin that is part of a lip [Automatically generated definition]." [OBOL:automatic] synonym: "lip skin" EXACT [] synonym: "lip zone of skin" EXACT [OBOL:automatic] synonym: "skin of lips" RELATED OMO:0003004 [] synonym: "zone of skin of lip" EXACT [OBOL:automatic] xref: EMAPA:37643 {source="MA:th"} xref: FMA:24764 xref: MA:0001579 xref: NCIT:C12291 xref: SCTID:244092005 xref: UMLS:C0222101 {source="ncithesaurus:Skin_of_the_Lip"} is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0001833 ! lip [Term] id: UBERON:0001459 name: skin of external ear def: "A zone of skin that is part of a external ear [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic] synonym: "auricular region zone of skin" EXACT [OBOL:automatic] synonym: "ear skin" EXACT [] synonym: "external ear skin" EXACT [] synonym: "external ear zone of skin" EXACT [OBOL:automatic] synonym: "outer ear zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic] synonym: "zone of skin of external ear" EXACT [OBOL:automatic] synonym: "zone of skin of outer ear" EXACT [OBOL:automatic] xref: EMAPA:35301 xref: FMA:24775 xref: MA:0001233 xref: NCIT:C49481 xref: SCTID:244073008 xref: UMLS:C0222110 {source="ncithesaurus:Ear_Skin"} is_a: UBERON:0001084 ! skin of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001460 name: arm def: "The part of the forelimb extending from the shoulder to the autopod[cjm]." [Wikipedia:Arm] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "brachium" RELATED OMO:0003011 [Wikipedia:Arm] synonym: "upper extremity" RELATED [MESH:A01.378.800] xref: BTO:0001435 xref: CALOHA:TS-2204 xref: EFO:0001410 xref: EHDAA2:0000140 xref: EHDAA:4164 xref: EHDAA:6210 xref: EHDAA:8275 xref: EMAPA:17413 xref: GAID:52 xref: MA:0000033 xref: MESH:D001132 xref: VHOG:0000339 xref: Wikipedia:Arm is_a: UBERON:0006058 ! multi-limb segment region is_a: UBERON:0008785 ! upper limb segment property_value: curator_notes "this class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Upperarm.jpg" xsd:anyURI property_value: editor_note "currently declared as overlapping hand, as AOs disagree over whether some wrist parts are in the arm or hand" xsd:string property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000339", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001461 name: elbow def: "The elbow is the region surrounding the elbow-joint-the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]." [Wikipedia:Elbow] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "articulatio cubiti" RELATED OMO:0003011 [Wikipedia:Elbow] synonym: "cubital region" EXACT [] synonym: "elbow limb segment" EXACT [] synonym: "elbow region" EXACT [] xref: CALOHA:TS-2222 xref: EFO:0003069 xref: EHDAA2:0000429 xref: EHDAA:4166 xref: EHDAA:6212 xref: EMAPA:17414 xref: FMA:24901 xref: GAID:54 xref: galen:Elbow xref: MA:0000036 xref: MESH:D004550 xref: SCTID:76248009 xref: VHOG:0000340 xref: Wikipedia:Elbow is_a: UBERON:0008785 ! upper limb segment relationship: part_of UBERON:0001460 {source="EHDAA2"} ! arm property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5c/Elbow_coude.JPG" xsd:anyURI property_value: has_relational_adjective "cubital" xsd:string property_value: terminology_notes "Naming conventions for pod terms under discussion within phenoscape group" xsd:string [Term] id: UBERON:0001463 name: manual digit 1 def: "1st (preaxial) digit of the manus[Wikipedia]." [PMCID:PMC2553264, Wikipedia:Thumb] subset: pheno_slim subset: uberon_slim synonym: "alula" NARROW SENSU [Wikipedia:Alula] synonym: "digit 1 of fore-paw" EXACT [EMAPA:17429] synonym: "digit 1 of manus" EXACT [] synonym: "digitus 1" BROAD [] synonym: "digitus I" BROAD OMO:0003011 [Wikipedia:Thumb] synonym: "digitus primus" BROAD OMO:0003011 [Wikipedia:Thumb] synonym: "digitus primus [I]" BROAD [] synonym: "finger 1" EXACT [EHDAA2:0000511] synonym: "first digit of hand" EXACT [] synonym: "first finger" RELATED [EMAPA:17429] synonym: "fore digit I" EXACT [AAO:0010639] synonym: "fore limb digit 1" EXACT [OBOL:accepted] synonym: "forelimb dewclaw" NARROW SENSU [Wikipedia:Dewclaw] synonym: "hand digit 1" EXACT [MA:0000454] synonym: "hand digit 1" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit 1" EXACT [] synonym: "manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "pollex" EXACT OMO:0003011 [Wikipedia:Thumb] synonym: "thumb" NARROW SENSU [] xref: AAO:0010639 xref: EHDAA2:0000511 xref: EMAPA:17429 xref: FMA:24938 xref: GAID:58 xref: MA:0000454 xref: MESH:D013933 xref: NCIT:C52834 xref: SCTID:302540006 xref: SCTID:69603001 xref: UMLS:C0040067 {source="ncithesaurus:Hand_Digit_1"} xref: Wikipedia:Thumb is_a: UBERON:0006048 ! digit 1 is_a: UBERON:0019231 ! manual digit 1 or 5 relationship: ambiguous_for_taxon NCBITaxon:8782 relationship: part_of UBERON:5001463 ! manual digit 1 plus metapodial segment property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Thumb-up.jpg" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2c/Thumbs_up.jpg" xsd:anyURI property_value: taxon_notes "Not present in Anurans (Phenotype RCN Oct 2012)" xsd:string property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", source="PMID:10220427", source="PhenoscapeRCN", seeAlso="UBERON:0012260"} [Term] id: UBERON:0001464 name: hip def: "The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]." [Wikipedia:Hip] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "coxa" RELATED OMO:0003011 [Wikipedia:Hip] synonym: "hip region" EXACT [FMA:24964] synonym: "regio coxae" EXACT [FMA:24964] xref: BTO:0001457 xref: CALOHA:TS-2226 xref: EFO:0001929 xref: EHDAA2:0000783 xref: EHDAA:5153 xref: EHDAA:6178 xref: EMAPA:17490 xref: FMA:24964 xref: GAID:47 xref: galen:Hip xref: MA:0000045 xref: MESH:D006615 xref: NCIT:C64193 xref: SCTID:302543008 xref: UMLS:C0019552 {source="ncithesaurus:Hip"} xref: VHOG:0000346 xref: Wikipedia:Hip is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0010709 ! pelvic complex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Hip.jpg" xsd:anyURI property_value: external_ontology_notes "See notes for shoulder. in BTO this is part of the abdomen - this creates an inconsistency if limb and abdomen are spatially disjoint" xsd:string {external_ontology="BTO"} property_value: has_relational_adjective "coxal" xsd:string property_value: homology_notes "The pelvic girdle is never joined by contributions of dermal bone. From its first appearance in placoderms, the pelvic girdle is exclusively endoskeletal. It arose from pterygiophores, perhaps several times, in support of the fin.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000346", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.333", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001465 name: knee def: "A segment of the hindlimb that corresponds to the joint connecting a hindlimb stylopod and zeugopod." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "knee region" EXACT [] xref: BTO:0003595 xref: CALOHA:TS-2220 xref: EHDAA2:0000895 xref: EHDAA:5159 xref: EHDAA:6184 xref: EMAPA:17493 xref: FMA:24974 xref: GAID:48 xref: galen:Knee xref: MA:0000046 xref: MESH:D007717 xref: SCTID:361291001 xref: VHOG:0000347 is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0000978 ! leg relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Male_Knee_by_David_Shankbone.jpg" xsd:anyURI [Term] id: UBERON:0001466 name: pedal digit alt_id: UBERON:0000027 def: "A digit that is part of a pes (foot)." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "digit of foot" EXACT [] synonym: "digit of terminal segment of lower limb" EXACT [OBOL:automatic] synonym: "digiti pedis" EXACT OMO:0003004 [FMA:70664, FMA:TA] synonym: "digiti pedis" RELATED OMO:0003011 [Wikipedia:Toe] synonym: "digitipedis" RELATED [BTO:0002348] synonym: "digitus pedis" EXACT [] synonym: "foot digit" EXACT [MA:0000048] synonym: "hind digit" EXACT [XAO:0003035] synonym: "hind_digit" EXACT [AAO:0000888] synonym: "hindlimb digit" EXACT [] synonym: "pedal digit (phalangeal portion) plus soft tissue" EXACT COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pes digit" EXACT [] synonym: "toe" EXACT [FMA:25046] xref: AAO:0000888 xref: BTO:0002348 xref: EMAPA:32649 xref: FMA:25046 xref: GAID:44 xref: galen:Toe xref: MA:0000048 xref: NCIT:C33788 xref: SCTID:116667001 xref: UMLS:C0040357 {source="ncithesaurus:Toe"} xref: Wikipedia:Toe xref: XAO:0003035 is_a: UBERON:0002544 ! digit relationship: part_of UBERON:0012142 {source="PHENOSCAPE:ni"} ! pedal digitopodium region relationship: part_of UBERON:5001466 ! pedal digit plus metapodial segment property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Toes.jpg" xsd:anyURI [Term] id: UBERON:0001467 name: shoulder def: "A subdivision of the pectoral complex consisting of the structures in the region of the shoulder joint (which connects the humerus, scapula and clavicle)." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "articulatio humeri" RELATED OMO:0003011 [Wikipedia:Shoulder] synonym: "shoulder region" EXACT [] xref: CALOHA:TS-2229 xref: EFO:0003068 xref: EHDAA2:0001834 xref: EHDAA:4180 xref: EHDAA:6228 xref: EMAPA:17421 xref: FMA:25202 xref: GAID:60 xref: galen:Shoulder xref: MA:0000038 xref: MESH:D012782 xref: NCIT:C25203 xref: SCTID:361103004 xref: UMLS:C0037004 {source="ncithesaurus:Shoulder"} xref: VHOG:0000342 xref: Wikipedia:Shoulder is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0010708 ! pectoral complex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/90/Shoulderjoint.PNG" xsd:anyURI property_value: external_ontology_notes "In FMA, the shoulder is part of the pectoral girdle region. in MA, shoulder structures like shoulder joints, bones, nerves etc are part of the shoulder and the forelimb. E.g. humerus is a shoulder bone" xsd:string {external_ontology="FMA"} property_value: homology_notes "(...) endochondral elements of the early tetrapod shoulder develop from two centers of ossification, giving rise to a scapula and a 'coracoid'.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000342", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.332", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001468 name: intervertebral joint def: "The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments." [http://www.medilexicon.com/medicaldictionary.php?t=87401] synonym: "inter-centrum joint" EXACT [] synonym: "inter-vertebral joint" EXACT [] synonym: "intervertebral symphysis" EXACT [FMA:25511] synonym: "joint of vertebral body" EXACT [FMA:25511] synonym: "vertebral joint" BROAD [] xref: EMAPA:37622 {source="MA:th"} xref: FMA:25511 xref: MA:0001514 xref: NCIT:C49577 xref: SCTID:244512000 xref: UMLS:C1182940 {source="ncithesaurus:Vertebral_Joint"} is_a: UBERON:0002216 {source="FMA"} ! symphysis relationship: part_of UBERON:0001130 {source="FMA"} ! vertebral column property_value: external_ontology_notes "FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001469 name: sternoclavicular joint def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [Wikipedia:Sternoclavicular_articulation] subset: uberon_slim synonym: "articulatio sternoclavicularis" RELATED OMO:0003011 [Wikipedia:Sternoclavicular_articulation] synonym: "sterno clavicular joint" EXACT [] synonym: "sternoclavicular" BROAD [Wikipedia:Sternoclavicular_articulation] synonym: "sternoclavicular articulation" EXACT [Wikipedia:Sternoclavicular_articulation] xref: EMAPA:19203 xref: FMA:25883 xref: GAID:270 xref: MA:0001507 xref: MESH:D013247 xref: NCIT:C33615 xref: SCTID:182165002 xref: UMLS:C0038291 {source="ncithesaurus:Sternoclavicular_Joint"} xref: Wikipedia:Sternoclavicular_articulation is_a: UBERON:0011108 {source="FMA"} ! synovial joint of pectoral girdle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png" xsd:anyURI [Term] id: UBERON:0001470 name: glenohumeral joint def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [Wikipedia:Glenohumeral_joint] subset: uberon_slim synonym: "articulatio humeri" EXACT OMO:0003011 [FMA:25912, FMA:TA] synonym: "humeral joint" EXACT [FMA:25912] synonym: "humeroscapular joint" RELATED [Wikipedia:Glenohumeral_joint] synonym: "joint of shoulder" BROAD [OBOL:automatic] synonym: "shoulder joint" BROAD [MA:0000459] xref: EMAPA:19105 xref: FMA:25912 xref: GAID:269 xref: galen:ShoulderJoint xref: MA:0000459 xref: MESH:D012785 xref: NCIT:C33548 xref: SCTID:182168000 xref: UMLS:C0037009 {source="ncithesaurus:Shoulder_Joint"} xref: VHOG:0001002 xref: Wikipedia:Glenohumeral_joint is_a: UBERON:0011108 ! synovial joint of pectoral girdle is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint is_a: UBERON:0016884 ! shoulder joint relationship: part_of UBERON:0004753 ! scapulocoracoid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray327.png" xsd:anyURI property_value: editor_note "note that in this ontology 'glenoid fossa' is a cavity (consistent with FMA) - consider adding a class for the surface of the scapula that is adjacent to this cavity, and making a more explicit connects relationship" xsd:string property_value: external_ontology_notes "in FMA, this is part of the bony pectoral girdle, alongside the skeleton of pectoral girdle" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001471 name: skin of prepuce of penis def: "The loose fold of skin that covers the penis." [MP:0003553, NCBI:matt] subset: pheno_slim synonym: "foreskin of penis" EXACT [] synonym: "penis foreskin" EXACT [] synonym: "preputial skin" EXACT [] xref: FMA:27648 xref: MA:0001744 xref: SCTID:39059001 xref: VHOG:0001342 is_a: UBERON:0001331 ! skin of penis relationship: part_of UBERON:0001332 ! prepuce of penis [Term] id: UBERON:0001472 name: vaginal venous plexus def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_venous_plexus] subset: uberon_slim synonym: "plexus venosus vaginalis" RELATED OMO:0003011 [Wikipedia:Vaginal_venous_plexus] synonym: "venous vaginal plexus" EXACT [] xref: EMAPA:37801 {source="MA:th"} xref: FMA:29713 xref: MA:0002257 xref: SCTID:294653003 xref: Wikipedia:Vaginal_venous_plexus is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ relationship: part_of UBERON:0000996 ! vagina property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png" xsd:anyURI [Term] id: UBERON:0001473 name: lymphatic vessel def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "lymph vessel" EXACT [] synonym: "vas lymphaticum" RELATED OMO:0003011 [Wikipedia:Lymphatic_vessel] xref: AAO:0011005 xref: BTO:0000752 xref: CALOHA:TS-2102 xref: EFO:0000873 xref: EMAPA:35532 xref: FMA:30315 xref: MA:0000138 xref: MAT:0000443 xref: MESH:D042601 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33038 xref: SCTID:279089004 xref: UMLS:C0229889 {source="ncithesaurus:Lymphatic_Vessel"} xref: VHOG:0001249 xref: Wikipedia:Lymphatic_vessel xref: XAO:0000375 is_a: UBERON:0000055 ! vessel relationship: dubious_for_taxon NCBITaxon:8342 {source="DOI:10.1152/japplphysiol.00201.2013"} relationship: part_of UBERON:0004536 ! lymph vasculature relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/44/Illu_lymph_capillary.jpg" xsd:anyURI property_value: external_definition "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005105", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "A vessel that contains or conveys lymph.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011005", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "Tetrapods have evolved distinct lymphatic systems, in which lymphatic capillaries help drain most of the tissues of the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001249", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.627", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001474 name: bone element def: "Skeletal element that is composed of bone tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/277, PSPUB:0000170, VSAO:0000057] subset: efo_slim subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bone" RELATED [AEO:0000082, BTO:0000140, MA:0001459, VHOG:0001190] synonym: "bone organ" EXACT [FMA:5018] synonym: "bones" RELATED OMO:0003004 [ZFA:0001514] xref: AAO:0000047 xref: AEO:0000082 xref: BTO:0000140 xref: CALOHA:TS-0088 xref: EFO:0000298 xref: EHDAA2:0003082 xref: EMAPA:32782 xref: ENVO:00002039 xref: EV:0100140 xref: FMA:30317 xref: FMA:5018 xref: GAID:92 xref: galen:Bone xref: MA:0001459 xref: MAT:0000299 xref: MIAA:0000299 xref: NCIT:C12366 xref: SCTID:90780006 xref: TAO:0001514 xref: UMLS:C0262950 {source="ncithesaurus:Bone"} xref: VHOG:0001190 xref: VSAO:0000057 xref: Wikipedia:Bone xref: XAO:0000169 xref: ZFA:0001514 is_a: UBERON:0004765 ! skeletal element relationship: mutually_spatially_disjoint_with UBERON:0001015 ! musculature relationship: mutually_spatially_disjoint_with UBERON:0001630 ! muscle organ relationship: mutually_spatially_disjoint_with UBERON:0002385 ! muscle tissue property_value: axiom_lost_from_external_ontology "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000047", ontology="AAO"} property_value: external_definition "Also called osseous tissue, (Latin: os). Is a type of hard endoskeletal connective tissue found in many vertebrate animals. Bone is the main tissue of body organs that support body structures, protect internal organs, (in conjunction with muscles) facilitate movement; and are involved with cell formation, calcium metabolism, and mineral storage.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000047", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001514", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Skeletal element that is composed of bone tissue.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000057", ontology="VSAO", source="PSPUB:0000170"} property_value: homology_notes "The 'new animal phylogeny' reveals that many of the groups known to biomineralize sit among close relatives that do not, and it favours an interpretation of convergent or parallel evolution for biomineralization in animals. (...) Whether this 'biomineralization toolkit'of genes reflects a parallel co-option of a common suite of genes or the inheritance of a skeletogenic gene regulatory network from a biomineralizing common ancestor remains an open debate.[debated][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001190", ontology="VHOG", source="DOI:10.1159/000324245 Murdock DJ, Donoghue PC, Evolutionary Origins of Animal Skeletal Biomineralization. Cells Tissues Organs (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001475 name: obsolete ligament comment: made obsolete as it incorrectly grouped classes is_obsolete: true consider: FMA:30319 consider: UBERON:0000211 consider: UBERON:0002360 [Term] id: UBERON:0001476 name: deltoid def: "A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA,generalized]." [FMA:32521, http://orcid.org/0000-0002-6601-2165] comment: We use a generic definition that includes the deltoideus as represented in AAO: 'Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus'. Kardong: Dorsal group subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "common shoulder muscle" RELATED [Wikipedia:Deltoid_muscle] synonym: "deltoid muscle" EXACT [Wikipedia:Deltoid_muscle] synonym: "deltoideus" RELATED [Wikipedia:Deltoid_muscle] synonym: "deltoideus muscle" RELATED [Wikipedia:Deltoid_muscle] synonym: "m. deltoideus" EXACT [AAO:0010716] synonym: "musculus deltoideus" EXACT [Wikipedia:Deltoid_muscle] synonym: "musculus deltoideus" RELATED OMO:0003011 [Wikipedia:Deltoid_muscle] xref: AAO:0010716 xref: EFO:0001412 xref: EHDAA2:0000339 xref: EMAPA:18177 xref: FMA:32521 xref: MA:0002286 xref: NCIT:C32446 xref: SCTID:181620007 xref: UMLS:C0224234 {source="ncithesaurus:Deltoid"} xref: VHOG:0000846 xref: Wikipedia:Deltoid_muscle is_a: UBERON:0001482 {source="FMA"} ! muscle of shoulder is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0006219 {source="EHDAA2"} ! deltoid pre-muscle mass relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png" xsd:anyURI property_value: external_definition "Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010716", ontology="AAO", source="AAO:MEJ"} [Term] id: UBERON:0001477 name: infraspinatus muscle def: "The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [Wikipedia:Infraspinatus_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "infrascapularis" RELATED [EMAPA:18526] synonym: "infraspinatus" EXACT [MA:0002323] synonym: "musculus infraspinatus" RELATED OMO:0003011 [Wikipedia:Infraspinatus_muscle] xref: EHDAA2:0000826 xref: EHDAA:8305 xref: EMAPA:18526 xref: FMA:32546 xref: MA:0002323 xref: NCIT:C32797 xref: SCTID:277439009 xref: UMLS:C0584882 {source="ncithesaurus:Infraspinatus"} xref: VHOG:0000921 xref: Wikipedia:Infraspinatus_muscle is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0010891 ! pectoral complex muscle is_a: UBERON:0034908 ! scapular muscle relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png" xsd:anyURI property_value: taxon_notes "The pectoral muscles - the pectoralis major and pectoralis minor - evolved from a primitive muscle sheet that connected the coracoid to the humerus. In late reptilians and early mammals, this muscle structure was displaced dorsally; while most of its components evolved into the pectoralis major, some fibers eventually attached to the scapula and evolved into the supraspinatus, the infraspinatus, and parts of the subscapularis." xsd:string {source="WP"} [Term] id: UBERON:0001478 name: teres major muscle def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [Wikipedia:Teres_major_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "musculus teres major" RELATED OMO:0003011 [Wikipedia:Teres_major_muscle] synonym: "teres major" EXACT [MA:0002392] xref: EHDAA2:0002004 xref: EHDAA:8321 xref: EMAPA:19110 xref: FMA:32549 xref: MA:0002392 xref: NCIT:C33750 xref: SCTID:277444002 xref: UMLS:C0224232 {source="ncithesaurus:Teres_Major_Muscle"} xref: VHOG:0000750 xref: Wikipedia:Teres_major_muscle is_a: UBERON:0010467 ! teres muscle relationship: develops_from UBERON:0010988 {source="EHDAA2"} ! teres major pre-muscle mass relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png" xsd:anyURI [Term] id: UBERON:0001479 name: sesamoid bone def: "A sesamoid element that is composed of bone tissue." [http://orcid.org/0000-0002-6601-2165] comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage.[VSAO] subset: uberon_slim synonym: "ossa sesamoidea" EXACT OMO:0003011 [Wikipedia:Sesamoid_bone] synonym: "sesamoid" BROAD [] xref: AEO:0000086 xref: EHDAA2:0003086 xref: EMAPA:36620 xref: FMA:32672 xref: GAID:210 xref: galen:SessamoidBone xref: MA:0001375 xref: MESH:D012716 xref: NCIT:C33541 xref: SCTID:362914002 xref: UMLS:C0036846 {source="ncithesaurus:Sesamoid_Bone"} xref: Wikipedia:Sesamoid_bone is_a: UBERON:0013630 {source="UBERON:cjm"} ! short bone is_a: UBERON:0013631 ! sesamoid element property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray350.png" xsd:anyURI [Term] id: UBERON:0001480 name: proximal carpal bone def: "A carpal bone that proximally_connected_to a forelimb zeugopod skeleton." [OBOL:automatic] xref: EMAPA:36164 xref: FMA:33302 xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0014395 ! proximal mesopodial bone is_a: UBERON:0015078 ! proximal carpal endochondral element relationship: develops_from UBERON:0015079 ! proximal carpal cartilage [Term] id: UBERON:0001481 name: distal carpal bone def: "A distal carpal endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] synonym: "distal carpal" EXACT [AAO:0000847] xref: AAO:0000847 xref: EMAPA:36168 xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0015068 ! distal carpal endochondral element is_a: UBERON:0018102 ! distal mesopodial bone relationship: develops_from UBERON:0015069 ! distal carpal cartilage element property_value: external_definition "Series of elements that articulate with the metacarpals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000847", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "Primitively, each of the distal bones appears to have articulated with a single metacarpal" xsd:string {source="WP"} [Term] id: UBERON:0001482 name: muscle of shoulder def: "Any muscle organ that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "muscle organ of shoulder" EXACT [OBOL:automatic] synonym: "shoulder muscle" EXACT [] synonym: "shoulder muscle organ" EXACT [OBOL:automatic] xref: EMAPA:36154 xref: FMA:33531 xref: MA:0000633 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0004476 {source="prolog"} ! musculature of shoulder relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001483 name: skin of shoulder def: "A zone of skin that is part of a shoulder region." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "shoulder skin" EXACT [] synonym: "shoulder zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of shoulder" EXACT [OBOL:automatic] xref: EMAPA:18059 xref: FMA:34830 xref: MA:0000635 xref: SCTID:244131002 is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0001467 ! shoulder property_value: external_ontology_notes "in MA this is a subclass of forelimb skin, but this violates part-disjointness in Uberon" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001484 name: articular capsule def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [Wikipedia:Articular_capsule] subset: organ_slim subset: uberon_slim synonym: "capsula articularis" EXACT OMO:0003011 [FMA:34836, FMA:TA] synonym: "capsulae articulares" RELATED OMO:0003011 [Wikipedia:Articular_capsule] synonym: "fibrous capsule of joint" EXACT [] synonym: "joint capsule" EXACT [] synonym: "joint fibrous capsule" EXACT [] xref: EMAPA:37621 {source="MA:th"} xref: FMA:34836 xref: GAID:263 xref: galen:JointCapsule xref: MA:0001519 xref: MESH:D017746 xref: NCIT:C32259 xref: NCIT:C84388 xref: SCTID:182238002 xref: UMLS:C0206207 {source="ncithesaurus:Joint_Capsule"} xref: Wikipedia:Articular_capsule is_a: UBERON:0000094 ! membrane organ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray299.png" xsd:anyURI property_value: external_ontology_notes "check ncita" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0001485 name: knee joint def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation[WP,unvetted]." [Wikipedia:Knee] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "articulatio genus" RELATED OMO:0003011 [Wikipedia:Knee] synonym: "joint of knee" EXACT [OBOL:automatic] xref: EFO:0001957 xref: EMAPA:19137 xref: FMA:35175 xref: GAID:114 xref: galen:KneeJoint xref: MA:0000471 xref: MESH:D007719 xref: NCIT:C32898 xref: SCTID:182204005 xref: UMLS:C0022745 {source="ncithesaurus:Knee_Joint"} xref: VHOG:0001003 xref: Wikipedia:Knee is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 ! synovial limb joint relationship: develops_from UBERON:0006256 {evidence="definitional"} ! knee joint primordium relationship: part_of UBERON:0001465 ! knee relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Knee.agr.jpg" xsd:anyURI [Term] id: UBERON:0001486 name: hip joint def: "A synovial joint that connects the femur to the acetbulum of the innominate bone." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "articulatio coxofemoralis" EXACT [FMA:35178] synonym: "coxal articulation" RELATED [Wikipedia:Hip] synonym: "femoro-iliac joint" EXACT [] xref: BTO:0001502 xref: EMAPA:19136 xref: FMA:35178 xref: GAID:262 xref: galen:HipJoint xref: MA:0000470 xref: MESH:D006621 xref: NCIT:C32742 xref: SCTID:182201002 xref: UMLS:C0019558 {source="ncithesaurus:Hip_Joint"} xref: VHOG:0001001 xref: Wikipedia:Hip#Articulation is_a: UBERON:0011107 {source="FMA"} ! synovial joint of pelvic girdle relationship: develops_from UBERON:0006244 {evidence="definitional"} ! hip joint primordium relationship: part_of UBERON:0001464 {source="FMA"} ! hip [Term] id: UBERON:0001487 name: pes joint def: "A skeletal joint that is part of a pes [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "articulationes pedis" EXACT OMO:0003011 [FMA:71349, FMA:TA] synonym: "foot joint" EXACT [] synonym: "hind limb autopod joint" EXACT [OBOL:automatic] synonym: "joint of pes" EXACT [] synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "joints of foot" EXACT OMO:0003004 [FMA:71349] synonym: "pedal joint" EXACT [] xref: EMAPA:32949 xref: FMA:35194 xref: GAID:256 xref: MA:0000464 xref: MESH:D033023 xref: SCTID:244555001 xref: Wikipedia:Joints_of_foot is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0003841 ! autopod joint is_a: UBERON:0011139 ! synovial limb joint relationship: fma_set_term FMA:71349 relationship: part_of UBERON:0002387 ! pes property_value: editor_note "TODO check FMA - use the set class for now" xsd:string [Term] id: UBERON:0001488 name: ankle joint def: "A joint that connects the hindlimb autopod and zeugopod skeletons." [https://orcid.org/0000-0002-6601-2165, MESH:A02.835.583.378.062, Wikipedia:Ankle] subset: efo_slim subset: uberon_slim synonym: "gambrel" NARROW [Wikipedia:Hock_(anatomy)] synonym: "hock" NARROW [Wikipedia:Hock_(anatomy)] synonym: "hock joint" NARROW [Wikipedia:Hock_(anatomy)] synonym: "mortise joint" RELATED [BTO:0004706] synonym: "talocrural articulation" RELATED [Wikipedia:Ankle] synonym: "talocrural joint" RELATED [Wikipedia:Ankle] synonym: "talotibial joint" NARROW [Wikipedia:Ankle] xref: BTO:0004706 xref: EMAPA:35126 xref: FMA:35195 xref: GAID:257 xref: galen:AnkleJoint xref: MA:0000463 xref: MESH:D000843 xref: NCIT:C32078 xref: SCTID:182212002 xref: UMLS:C0003087 {source="ncithesaurus:Ankle_Joint"} xref: Wikipedia:Ankle is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 ! synovial limb joint property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg" xsd:anyURI property_value: taxon_notes "todo - accurately represent different types of ankle joint" xsd:string [Term] id: UBERON:0001489 name: manus joint def: "A skeletal joint that is part of a manus (hand) [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "articulationes manus" EXACT OMO:0003011 [FMA:71345, FMA:TA] synonym: "hand joint" EXACT [] synonym: "joint of hand" EXACT [] synonym: "joint of manus" EXACT [] synonym: "joint of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "manual joint" EXACT [] xref: EMAPA:32641 xref: MA:0000452 xref: SCTID:244546004 xref: Wikipedia:Joints_of_hand is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0003841 ! autopod joint is_a: UBERON:0011139 ! synovial limb joint relationship: fma_set_term FMA:71345 relationship: part_of UBERON:0002398 ! manus property_value: editor_note "TODO check FMA - use the set class for now" xsd:string [Term] id: UBERON:0001490 name: elbow joint def: "A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Elbow] subset: pheno_slim subset: uberon_slim synonym: "articulatio cubiti" EXACT OMO:0003011 [] synonym: "cubital region joint" EXACT [OBOL:automatic] synonym: "joint of cubital region" EXACT [OBOL:automatic] synonym: "joint of elbow" EXACT [OBOL:automatic] xref: EMAPA:19102 xref: FMA:35289 xref: GAID:253 xref: galen:ElbowJoint xref: MA:0000451 xref: MESH:D004551 xref: NCIT:C32497 xref: SCTID:182169008 xref: UMLS:C0013770 {source="ncithesaurus:Elbow_Joint"} xref: VHOG:0000997 xref: Wikipedia:Elbow is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0011139 ! synovial limb joint relationship: develops_from UBERON:0006224 {evidence="definitional"} ! elbow joint primordium relationship: part_of UBERON:0001461 ! elbow property_value: taxon_notes "In human anatomy, the elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis" xsd:string {source="HP"} [Term] id: UBERON:0001491 name: wrist joint def: "A joint connecting the forelimb zeugopod skeleton with the carpal skeleton." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?group_id=76834&atid=1205376, Wikipedia:Wrist] subset: uberon_slim synonym: "carpal region joint" EXACT [OBOL:automatic] synonym: "joint of carpal region" EXACT [OBOL:automatic] synonym: "joint of wrist" EXACT [] synonym: "radiocarpal joint" NARROW INCONSISTENT [FMA:35291] xref: FMA:321842 xref: GAID:274 xref: galen:WristJoint xref: MA:0000460 xref: MESH:D014955 xref: NCIT:C33894 xref: SCTID:182178002 xref: UMLS:C1322271 {source="ncithesaurus:Wrist_Joint"} xref: Wikipedia:Wrist is_a: UBERON:0001489 ! manus joint relationship: part_of UBERON:0004452 ! carpal region property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4a/Human_wrist.png" xsd:anyURI property_value: external_ontology_notes "in FMA this includes radio-carpal and radio-ulnar *ligaments*" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001492 name: radial nerve def: "A nerve that supplies the upper limb, including the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin." [Wikipedia:Radial_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "nervus radialis" RELATED OMO:0003011 [Wikipedia:Radial_nerve] xref: EHDAA2:0001584 xref: EHDAA:5650 xref: EMAPA:17278 xref: FMA:37069 xref: GAID:845 xref: MA:0001171 xref: MESH:D011826 xref: NCIT:C52812 xref: SCTID:181011002 xref: UMLS:C0034518 {source="ncithesaurus:Radial_Nerve"} xref: VHOG:0000896 xref: Wikipedia:Radial_nerve is_a: UBERON:0003433 ! arm nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray818.png" xsd:anyURI [Term] id: UBERON:0001493 name: axillary nerve def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [Wikipedia:Axillary_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "auxillery nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "circumflex humeral nerve" EXACT [] synonym: "circumflex nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "nervus axillaris" RELATED OMO:0003011 [Wikipedia:Axillary_nerve] xref: EMAPA:18802 xref: FMA:37072 xref: MA:0001166 xref: NCIT:C52817 xref: SCTID:181009006 xref: UMLS:C0228885 {source="ncithesaurus:Axillary_Nerve"} xref: Wikipedia:Axillary_nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001814 {source="MA"} ! brachial nerve plexus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg" xsd:anyURI [Term] id: UBERON:0001494 name: ulnar nerve alt_id: UBERON:0005668 def: "A nerve which runs near the ulna bone." [Wikipedia:Ulnar_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "nervus ulnaris" RELATED OMO:0003011 [Wikipedia:Ulnar_nerve] xref: EHDAA2:0002099 xref: EHDAA:5652 xref: EMAPA:17279 xref: FMA:37319 xref: GAID:846 xref: MA:0001174 xref: MESH:D014459 xref: NCIT:C52807 xref: SCTID:181012009 xref: UMLS:C0041602 {source="ncithesaurus:Ulnar_Nerve"} xref: VHOG:0000922 xref: Wikipedia:Ulnar_nerve is_a: UBERON:0003433 ! arm nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg" xsd:anyURI [Term] id: UBERON:0001495 name: pectoral muscle def: "Muscles of the upper chest. The term may refer to one of two muscles, the pectoralis major and pectoralis minor. The former is a thick muscle in the anterior portion of the chest. Its action involves flexion, medial rotation, and adduction of the humerus. The latter is a thin muscle located beneath the pectoralis major. Its action involves lowering the scapula and raising the ribs." [ncithesaurus:Pectoralis_Muscle] comment: This currently groups the major and minor muscles (which have different attachment sites) as well as the AAO structure: Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus subset: grouping_class subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "breast muscle" RELATED [BTO:0000023] synonym: "M. pectoralis" EXACT [AAO:0010727] synonym: "muscle of pectoral part of chest" EXACT [FMA:37349] synonym: "muscle of pectoral region" EXACT [FMA:37349] synonym: "pectoralis" RELATED [] synonym: "pectoralis group muscle" RELATED [] synonym: "pectoralis muscle" RELATED [BTO:0000023] xref: AAO:0010727 xref: BTO:0000023 xref: CALOHA:TS-0751 xref: EMAPA:35670 xref: FMA:37349 xref: GAID:153 xref: MA:0002423 xref: MESH:D010369 xref: NCIT:C33286 xref: SCTID:181621006 xref: UMLS:C0030747 {source="ncithesaurus:Pectoralis_Muscle"} is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0008196 {source="FMA"} ! muscle of pectoral girdle relationship: develops_from UBERON:0010984 ! pectoral pre-muscle mass relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png" xsd:anyURI property_value: external_definition "Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010727", ontology="AAO", source="AAO:MEJ"} [Term] id: UBERON:0001496 name: ascending aorta def: "The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart's axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]." [GO:0035905, Wikipedia:Ascending_aorta] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "aorta ascendens" RELATED OMO:0003011 [Wikipedia:Ascending_aorta] synonym: "ascending thoracic aorta" EXACT [EMAPA:17014] synonym: "pars ascendens aortae" EXACT [] synonym: "pars ascendens aortae" RELATED OMO:0003011 [Wikipedia:Ascending_aorta] xref: EHDAA2:0000147 xref: EHDAA:9828 xref: EMAPA:17014 xref: FMA:3736 xref: MA:0002570 xref: NCIT:C32150 xref: SCTID:181299009 xref: UMLS:C0003956 {source="ncithesaurus:Ascending_Aorta"} xref: Wikipedia:Ascending_aorta is_a: UBERON:0001515 ! thoracic aorta relationship: develops_from UBERON:0005338 {source="EHDAA2"} ! outflow tract aortic component relationship: part_of UBERON:0001515 ! thoracic aorta relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001497 name: muscle of pelvic girdle alt_id: UBERON:0003271 def: "Any muscle organ that is part of a pelvic girdle [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic] synonym: "muscle organ of pelvic girdle" EXACT [OBOL:automatic] synonym: "muscle organ of pelvic girdle bone" EXACT [OBOL:automatic] synonym: "pelvic girdle muscle" EXACT [] synonym: "pelvic girdle muscle organ" EXACT [OBOL:automatic] synonym: "pelvic girdle skeletal muscle" EXACT [EMAPA:18185] xref: EHDAA:8326 xref: EMAPA:18185 xref: FMA:37367 xref: MA:0000537 xref: RETIRED_EHDAA2:0001430 is_a: UBERON:0001325 ! muscle of pelvis is_a: UBERON:0010890 ! pelvic complex muscle relationship: part_of UBERON:0004470 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! musculature of pelvic girdle property_value: external_ontology_notes "Note that in MA, this is a subclass of pelvis muscle; in FMA this is a hindlimb muscle, but recall in FMA hindlimb includes the girdle." xsd:string {external_ontology="MA"} [Term] id: UBERON:0001498 name: muscle of pes def: "Any muscle organ that is part of a pes [Automatically generated definition]." [OBOL:automatic] synonym: "foot muscle" EXACT [] synonym: "foot muscle organ" EXACT [OBOL:automatic] synonym: "muscle of foot" EXACT [FMA:37369] synonym: "muscle organ of foot" EXACT [OBOL:automatic] xref: BTO:0000477 xref: EMAPA:36160 xref: FMA:37369 xref: MA:0000652 xref: SCTID:67240005 is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0004488 {source="prolog"} ! musculature of pes [Term] id: UBERON:0001499 name: muscle of arm alt_id: UBERON:0003272 def: "A muscle organ that is part of an arm [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas subset: pheno_slim synonym: "arm muscle" EXACT [MA:0000594] synonym: "arm muscle system" RELATED [EHDAA2:0000141] synonym: "arm skeletal muscle" EXACT [OBOL:automatic] synonym: "arm skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "muscle of upper arm or lower arm" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "upper arm / lower arm muscle" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA:8277 xref: EMAPA:36053 xref: MA:0000594 xref: RETIRED_EHDAA2:0000142 is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0004474 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! musculature of arm relationship: present_in_taxon NCBITaxon:9606 property_value: terminology_notes "See notes on UBERON:0001460 for possible terminological confusion over term 'arm'. MA uses this consistent with uberon (forelimb muscle is subdivided into shoulder, arm and hand)" xsd:string [Term] id: UBERON:0001500 name: muscle of manus def: "Any muscle organ that is part of a manus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "hand muscle" EXACT [MA:0000628] synonym: "manus muscle" EXACT [] synonym: "manus muscle organ" EXACT [OBOL:automatic] synonym: "muscle of hand" EXACT [FMA:37372] synonym: "muscle organ of manus" EXACT [OBOL:automatic] xref: EMAPA:32644 xref: FMA:37372 xref: MA:0000628 xref: SCTID:110540008 is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0004489 {source="prolog"} ! musculature of manus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001501 name: lumbrical muscle of manus def: "The lumbricals are intrinsic muscles of the manus that flex the metacarpophalangeal joints and extend the interphalangeal joints." [Wikipedia:Lumbricals_of_the_hand] synonym: "hand lumbrical" EXACT [] synonym: "hand lumbrical muscle" EXACT [MA:0002316] synonym: "lumbrical muscle of hand" RELATED [FMA:37385] synonym: "lumbrical of hand" EXACT [FMA:37385] synonym: "musculi lumbricales manus" EXACT OMO:0003011 [Wikipedia:Lumbricals_of_the_hand] xref: EMAPA:36217 xref: FMA:37385 xref: MA:0002316 xref: SCTID:181654008 xref: Wikipedia:Lumbricals_of_the_hand is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus [Term] id: UBERON:0001502 name: interosseous muscle of manus def: "Any of the interosseous muscles of the manus (hand). This includes the dorsal and plantar interossei." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "hand interosseous muscle" EXACT [MA:0002313] synonym: "interosseous muscle of hand" EXACT [FMA:37417] synonym: "manus interosseous muscle" EXACT [] xref: EMAPA:36216 xref: FMA:37417 xref: MA:0002313 xref: NCIT:C53173 xref: SCTID:265804003 xref: UMLS:C0224295 {source="ncithesaurus:Hand_Interosseous_Muscle"} is_a: UBERON:0006508 ! interosseous muscle of autopod is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus property_value: external_definition "The interosseous muscles are flexor muscles of the manus that help support and flex the metacarpophalangeal joints. In some species the muscles are known as the suspensory ligaments. The muscles are found under the deep digital flexor tendon and originate from the base of each metacarpal bone. From its origin each muscle runs a short way down until it divides into two tendons that continue down and insert onto the base of its corresponding proximal phalanx. Each tendon has a sesamoid imbedded within it, that lie over the metacarpophalangeal joint. A small tendon, sometimes known as an extensor branch, continues to proceed from the base of each proximal phalanx and connects to the common extensor tendon. It has a small role to play in the extension of each phalanx. The main innervation of this muscle is via a branch of the ulnaris nerve[MURDOCH:1022]." xsd:string {source="MURDOCH:1022"} [Term] id: UBERON:0001503 name: dorsal interosseous of manus def: "The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]." [Wikipedia:Dorsal_interossei_muscles_(hand)] comment: Action: abducts medial digits synonym: "dorsal hand interosseus muscle" EXACT [MA:0002314] synonym: "dorsal interosseous muscle of hand" RELATED [FMA:37418] synonym: "dorsal interosseous of hand" EXACT [FMA:37418] synonym: "dorsal manus interosseous muscle" EXACT [] synonym: "musculi interossei dorsales manus" EXACT [] xref: EMAPA:37519 {source="MA:th"} xref: FMA:37418 xref: MA:0002314 xref: NCIT:C52703 xref: SCTID:245002007 xref: UMLS:C1744530 {source="ncithesaurus:Dorsal_Hand_Interosseous_Muscle"} xref: Wikipedia:Dorsal_interossei_muscles_(hand) is_a: UBERON:0001502 ! interosseous muscle of manus [Term] id: UBERON:0001504 name: lumbrical muscle of pes def: "The lumbricals are four small skeletal muscles, accessory to the tendons of the flexor digitorum longus and numbered from the medial side of the pes; they arise from these tendons, as far back as their angles of division, each springing from two tendons, except the first." [Wikipedia:Lumbricals_of_the_foot] synonym: "foot lumbrical" EXACT [FMA:37453] synonym: "foot lumbrical muscle" EXACT [MA:0002305] synonym: "lumbrical muscle of foot" RELATED [FMA:37453] synonym: "lumbrical of foot" EXACT [FMA:37453] synonym: "pes lumbrical" EXACT [] synonym: "pes lumbrical muscle" EXACT [] xref: EMAPA:36263 xref: FMA:37453 xref: MA:0002305 xref: SCTID:181715003 xref: Wikipedia:Lumbricals_of_the_foot is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes [Term] id: UBERON:0001505 name: coracobrachialis muscle def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [Wikipedia:Coracobrachialis_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "coracobrachial" EXACT [MA:0002282] synonym: "coracobrachialis" EXACT [] synonym: "coracobrachialis muscle" RELATED [Wikipedia:Coracobrachialis_muscle] synonym: "musculus coracobrachialis" RELATED OMO:0003011 [Wikipedia:Coracobrachialis_muscle] synonym: "Pirogoff's aponeurosis" EXACT [FMA:37664] xref: EMAPA:36182 xref: FMA:37664 xref: MA:0002282 xref: NCIT:C53151 xref: SCTID:244980008 xref: UMLS:C0224246 {source="ncithesaurus:Coracobrachialis"} xref: Wikipedia:Coracobrachialis_muscle is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Coracobrachialis.png" xsd:anyURI [Term] id: UBERON:0001506 name: brachialis muscle def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [Wikipedia:Brachialis_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "brachialis" RELATED [Wikipedia:Brachialis_muscle] synonym: "brachialis anticus muscle" RELATED [Wikipedia:Brachialis_muscle] synonym: "Casserio's muscle" EXACT [] synonym: "musculus brachialis" RELATED OMO:0003011 [Wikipedia:Brachialis_muscle] xref: EHDAA2:0000181 xref: EHDAA:8281 xref: EMAPA:19109 xref: FMA:37667 xref: MA:0002271 xref: NCIT:C53149 xref: SCTID:244982000 xref: UMLS:C0224240 {source="ncithesaurus:Brachialis"} xref: VHOG:0001026 xref: Wikipedia:Brachialis_muscle is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0001499 ! muscle of arm relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/87/Brachialis.png" xsd:anyURI property_value: external_definition "A muscle of the stylopodium, covering the distal half of the humerus and the anterior part of the elbow joint. It functions to flex the zeugopodium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001026", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/brachialis"} [Term] id: UBERON:0001507 name: biceps brachii def: "A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [Wikipedia:Biceps_brachii_muscle] subset: pheno_slim subset: uberon_slim synonym: "biceps" BROAD [EHDAA2:0000167] synonym: "biceps brachii %26 brachialis muscles" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps brachii muscle" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps cubiti" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps muscle" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "musculus biceps brachii" RELATED OMO:0003011 [Wikipedia:Biceps_brachii_muscle] xref: BTO:0003419 xref: EHDAA2:0000167 xref: EHDAA:8279 xref: EMAPA:19108 xref: FMA:37670 xref: MA:0002269 xref: NCIT:C32200 xref: SCTID:265802004 xref: UMLS:C0559499 {source="ncithesaurus:Biceps"} xref: VHOG:0000861 xref: Wikipedia:Biceps_brachii_muscle is_a: UBERON:0004255 ! forelimb stylopod muscle property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5d/Biceps_brachii_muscle06.png" xsd:anyURI [Term] id: UBERON:0001508 name: arch of aorta def: "The convex portion of the aorta between the ascending and descending parts of the aorta; branches from it include the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery; the brachiocephalic trunk further splits to form the right subclavian artery and the right common carotid artery." [ISBN:0-683-40008-8, MP:0004113] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "aortic arch" RELATED [FMA:3768] synonym: "arcus aortae" EXACT OMO:0003011 [FMA:3768, FMA:TA] synonym: "thoracic aorta" RELATED [GAID:471] xref: BTO:0000157 xref: EFO:0002526 xref: EHDAA2:0000132 xref: EMAPA:17613 xref: FMA:3768 xref: GAID:471 xref: MA:0000475 xref: SCTID:181300001 xref: VHOG:0001196 xref: Wikipedia:Arch_of_aorta is_a: UBERON:0001515 ! thoracic aorta relationship: develops_from UBERON:0003121 {notes="left arch 4 in human", source="embryology.ch"} ! pharyngeal arch artery 4 relationship: part_of UBERON:0001515 ! thoracic aorta relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "Do not confuse with aortic arch" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "The curving portion between the ascending aorta and the descending aorta, giving rise to the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/arch+of+aorta"} property_value: homology_notes "The double systemic arch arches (left and right) present in amphibians and reptiles become reduced to a single systemic arch - the right in birds, the left in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.460 and p.461 Figure 12.20", source="http://bgee.unil.ch/"} property_value: taxon_notes "birds have right aortic arch, mammals left." xsd:string [Term] id: UBERON:0001509 name: triceps brachii def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [Wikipedia:Triceps_brachii_muscle] comment: Dorsal group derivative that acts on the forearm[Kardong] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "musculus triceps brachii" RELATED OMO:0003011 [Wikipedia:Triceps_brachii_muscle] synonym: "triceps" EXACT [EHDAA2:0002080] synonym: "triceps brachii muscle" EXACT [Wikipedia:Triceps_brachii_muscle] synonym: "triceps muscle" RELATED [Wikipedia:Triceps_brachii_muscle] xref: EHDAA2:0002080 xref: EHDAA:8287 xref: EMAPA:19111 xref: FMA:37688 xref: MA:0002399 xref: NCIT:C33812 xref: NCIT:C90604 xref: SCTID:181623009 xref: UMLS:C0559502 {source="ncithesaurus:Triceps_Brachii"} xref: VHOG:0000851 xref: Wikipedia:Triceps_brachii_muscle is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0004255 ! forelimb stylopod muscle is_a: UBERON:0034908 ! scapular muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png" xsd:anyURI [Term] id: UBERON:0001510 name: skin of knee def: "A zone of skin that is part of a knee [Automatically generated definition]." [OBOL:automatic] synonym: "knee skin" EXACT [] synonym: "knee zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of knee" EXACT [OBOL:automatic] xref: EMAPA:18151 xref: FMA:37800 xref: MA:0000668 xref: NCIT:C64859 xref: SCTID:181552001 xref: UMLS:C0222275 {source="ncithesaurus:Knee_Skin"} is_a: UBERON:0001511 ! skin of leg relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001511 name: skin of leg def: "A zone of skin that is part of a leg [Automatically generated definition]." [OBOL:automatic] synonym: "leg skin" EXACT [] synonym: "leg zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of leg" EXACT [OBOL:automatic] xref: EMAPA:37352 {source="MA:th"} xref: FMA:37828 xref: MA:0000674 xref: NCIT:C52749 xref: UMLS:C0222279 {source="ncithesaurus:Leg_Skin"} is_a: UBERON:0003532 ! hindlimb skin relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001512 name: skin of ankle def: "A zone of skin that is part of an ankle [Automatically generated definition]." [OBOL:automatic] synonym: "ankle skin" EXACT [] synonym: "ankle zone of skin" EXACT [OBOL:automatic] synonym: "tarsal region skin" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "zone of skin of ankle" EXACT [OBOL:automatic] xref: EMAPA:37353 {source="MA:th"} xref: FMA:37831 xref: MA:0000641 xref: NCIT:C52751 xref: SCTID:181560000 xref: UMLS:C0222286 {source="ncithesaurus:Ankle_Skin"} is_a: UBERON:0001513 ! skin of pes relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0001513 name: skin of pes def: "A zone of skin that is part of a pes [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "foot skin" EXACT [] synonym: "skin of foot" EXACT [FMA:37834] synonym: "skin of hind-paw" NARROW SENSU [EMAPA:18504] xref: EMAPA:18504 xref: FMA:37834 xref: MA:0000654 xref: NCIT:C52750 xref: SCTID:181529000 xref: UMLS:C0222289 {source="ncithesaurus:Foot_Skin"} is_a: UBERON:0003532 {source="MA"} ! hindlimb skin is_a: UBERON:0015790 ! autopod skin relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0001514 name: descending aorta def: "The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [GO:0035906, Wikipedia:Descending_aorta] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "aorta descendens" RELATED OMO:0003011 [Wikipedia:Descending_aorta] synonym: "pars descendens aortae" EXACT [FMA:3784] synonym: "pars descendens aortae" RELATED OMO:0003011 [Wikipedia:Descending_aorta] xref: EMAPA:18606 xref: FMA:3784 xref: MA:0002571 xref: NCIT:C32455 xref: SCTID:261399002 xref: UMLS:C0011666 {source="ncithesaurus:Descending_Aorta"} xref: Wikipedia:Descending_aorta is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005800 {source="FMA"} ! section of aorta relationship: develops_from UBERON:0005805 {source="Wikipedia"} ! dorsal aorta relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: development_notes "results from fusion of left and right dorsal aortae" xsd:string [Term] id: UBERON:0001515 name: thoracic aorta def: "The part of the aorta that extends from the origin at the heart to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [http://www.medterms.com, MP:0010468] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "aorta thoracalis" RELATED OMO:0003011 [Wikipedia:Thoracic_aorta] synonym: "aorta thoracica" EXACT OMO:0003011 [FMA:3786, FMA:TA] synonym: "pars thoracica aortae" RELATED OMO:0003011 [Wikipedia:Thoracic_aorta] synonym: "thoracic part of aorta" EXACT [] xref: BTO:0000157 xref: EFO:0002525 xref: EMAPA:18603 xref: FMA:3786 xref: GAID:471 xref: galen:ThoracicAorta xref: MA:0002569 xref: MESH:D001013 xref: NCIT:C33766 xref: SCTID:302510009 xref: UMLS:C1522460 {source="ncithesaurus:Thoracic_Aorta"} xref: Wikipedia:Thoracic_aorta is_a: UBERON:0005800 {source="FMA"} ! section of aorta relationship: part_of UBERON:0000915 ! thoracic segment of trunk property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png" xsd:anyURI [Term] id: UBERON:0001516 name: abdominal aorta def: "Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [BTO:0002976, Wikipedia:Abdominal_aorta] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "abdominal part of aorta" EXACT [FMA:3789] synonym: "abdominal part of aorta" RELATED [BTO:0002976] synonym: "aorta abdominalis" RELATED OMO:0003011 [BTO:0002976, Wikipedia:Abdominal_aorta] synonym: "descending abdominal aorta" EXACT [FMA:3789] synonym: "pars abdominalis aortae" EXACT [FMA:3789] synonym: "pars abdominalis aortae" RELATED OMO:0003011 [BTO:0002976, Wikipedia:Abdominal_aorta] xref: BTO:0002976 xref: EFO:0002524 xref: EMAPA:17856 xref: FMA:3789 xref: GAID:470 xref: galen:AbdominalAorta xref: MA:0000474 xref: MESH:D001012 xref: NCIT:C32038 xref: SCTID:244231007 xref: UMLS:C0003484 {source="ncithesaurus:Abdominal_Aorta"} xref: Wikipedia:Abdominal_aorta is_a: UBERON:0005800 ! section of aorta relationship: part_of UBERON:0001514 {source="FMA"} ! descending aorta relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png" xsd:anyURI property_value: editor_note "Many of the branches of the abdominal aorta in mammals may be branches of the dorsal aorta in other vertebrates" xsd:string [Term] id: UBERON:0001517 name: skin of elbow alt_id: UBERON:0003399 def: "A zone of skin that is part of a elbow [Automatically generated definition]." [OBOL:automatic] synonym: "cubital region zone of skin" EXACT [OBOL:automatic] synonym: "elbow skin" EXACT [] synonym: "elbow zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of cubital region" EXACT [OBOL:automatic] synonym: "zone of skin of elbow" EXACT [OBOL:automatic] xref: EMAPA:18051 xref: FMA:38250 xref: MA:0000610 xref: NCIT:C52755 xref: SCTID:181534001 xref: UMLS:C0222213 {source="ncithesaurus:Elbow_Skin"} is_a: UBERON:0002427 ! arm skin relationship: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0001518 name: skin of wrist def: "A zone of skin that is part of a wrist [Automatically generated definition]." [OBOL:automatic] synonym: "carpal region zone of skin" EXACT [OBOL:automatic] synonym: "wrist skin" EXACT [] synonym: "wrist zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of carpal region" EXACT [OBOL:automatic] synonym: "zone of skin of wrist" EXACT [OBOL:automatic] xref: EMAPA:37351 {source="MA:th"} xref: FMA:38280 xref: MA:0000638 xref: NCIT:C52752 xref: SCTID:181540008 xref: UMLS:C0222223 {source="ncithesaurus:Wrist_Skin"} is_a: UBERON:0001519 ! skin of manus relationship: part_of UBERON:0004452 ! carpal region [Term] id: UBERON:0001519 name: skin of manus def: "A zone of skin that is part of a manus [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "hand skin" EXACT [MA:0000630] synonym: "manus skin" EXACT [] synonym: "skin of fore-paw" NARROW SENSU [EMAPA:18486] synonym: "skin of hand" EXACT [FMA:38295] xref: EMAPA:18486 xref: FMA:38295 xref: MA:0000630 xref: NCIT:C52753 xref: SCTID:181527003 xref: UMLS:C0222224 {source="ncithesaurus:Hand_Skin"} is_a: UBERON:0003531 ! forelimb skin is_a: UBERON:0015790 ! autopod skin relationship: part_of UBERON:0002398 ! manus [Term] id: UBERON:0001520 name: pronator teres def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [Wikipedia:Pronator_teres_muscle] subset: uberon_slim synonym: "musculus pronator teres" RELATED OMO:0003011 [Wikipedia:Pronator_teres_muscle] synonym: "pronator teres muscle" RELATED [Wikipedia:Pronator_teres_muscle] xref: EMAPA:36207 xref: FMA:38450 xref: MA:0002357 xref: NCIT:C53174 xref: SCTID:302514000 xref: UMLS:C0224249 {source="ncithesaurus:Pronator_Teres"} xref: Wikipedia:Pronator_teres_muscle is_a: UBERON:0003662 ! forelimb muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/87/Pronator-teres.png" xsd:anyURI [Term] id: UBERON:0001521 name: flexor carpi radialis muscle def: "A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]." [Wikipedia:Flexor_carpi_radialis_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "flexor carpi radialis" EXACT [MA:0002297] xref: AAO:0010733 xref: EMAPA:36197 xref: FMA:38459 xref: MA:0002297 xref: NCIT:C53155 xref: SCTID:361816002 xref: UMLS:C0224252 {source="ncithesaurus:Flexor_Carpi_Radialis"} xref: Wikipedia:Flexor_carpi_radialis_muscle is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004254 ! forelimb zeugopod muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/59/Flexor-carpi-radialis.png" xsd:anyURI property_value: external_definition "Muscle which originates on the inner border of the humerus and inserts on the carpus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010733", ontology="AAO", source="AAO:MEJ"} property_value: external_ontology_notes "we group the AAO class here, despite the different insertion site - requires vetting: Muscle which originates on the inner border of the humerus and inserts on the carpus. [AAO:0010733]" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0001522 name: flexor carpi ulnaris muscle def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]." [Wikipedia:Flexor_carpi_ulnaris_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "flexor carpi ulnaris" EXACT [Wikipedia:Flexor_carpi_ulnaris_muscle] synonym: "musculus flexor carpi ulnaris" RELATED OMO:0003011 [Wikipedia:Flexor_carpi_ulnaris_muscle] xref: EMAPA:36198 xref: FMA:38465 xref: MA:0002298 xref: NCIT:C53156 xref: SCTID:244985003 xref: UMLS:C0224254 {source="ncithesaurus:Flexor_Carpi_Ulnaris"} xref: Wikipedia:Flexor_carpi_ulnaris_muscle is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004254 ! forelimb zeugopod muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c1/FCU.png" xsd:anyURI property_value: external_ontology_notes "AAO has a class with the same name, the exact insertion point is unclear; consider grouping :Muscle which originates from the medial condyle of the humerus and inserts on the carpus. [AAO:0010734]" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0001523 name: flexor digitorum profundus def: "A muscle in the forearm that flexes the manual digits[WP,modified]." [Wikipedia:Flexor_digitorum_profundus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "flexor digitorum profundus muscle" EXACT [Wikipedia:Flexor_digitorum_profundus_muscle] synonym: "musculus flexor digitorum profundus" RELATED OMO:0003011 [Wikipedia:Flexor_digitorum_profundus_muscle] xref: BTO:0001246 xref: EMAPA:19319 xref: FMA:38478 xref: MA:0002300 xref: NCIT:C52923 xref: UMLS:C0224261 {source="ncithesaurus:Flexor_Digitorum_Profundus"} xref: Wikipedia:Flexor_digitorum_profundus_muscle is_a: UBERON:0000366 {source="BTO"} ! flexor muscle is_a: UBERON:0004255 ! forelimb stylopod muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/24/Flexor-digitorum-profundis.png" xsd:anyURI property_value: external_ontology_notes "in EMAPA, this is part of the leg, which is presumably a mistake" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0001524 name: extensor carpi radialis longus muscle def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_longus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "extensor carpi radialis longus" EXACT [MA:0002291] synonym: "musculus extensor carpi radialis longus" RELATED OMO:0003011 [Wikipedia:Extensor_carpi_radialis_longus_muscle] xref: EMAPA:36189 xref: FMA:38494 xref: MA:0002291 xref: NCIT:C52913 xref: SCTID:244990000 xref: UMLS:C0224266 {source="ncithesaurus:Extensor_Carpi_Radialis_Longus"} xref: Wikipedia:Extensor_carpi_radialis_longus_muscle is_a: UBERON:0011867 ! extensor carpi radialis muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/ECR-longus.png" xsd:anyURI [Term] id: UBERON:0001525 name: extensor carpi radialis brevis muscle def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_brevis_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "extensor carpi radialis brevis" EXACT [MA:0002290] synonym: "musculus extensor carpi radialis brevis" EXACT OMO:0003011 [Wikipedia:Extensor_carpi_radialis_brevis_muscle] xref: EMAPA:36188 xref: FMA:38497 xref: MA:0002290 xref: NCIT:C52911 xref: SCTID:244991001 xref: UMLS:C0224267 {source="ncithesaurus:Extensor_Carpi_Radialis_Brevis"} xref: Wikipedia:Extensor_carpi_radialis_brevis_muscle is_a: UBERON:0011867 ! extensor carpi radialis muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001526 name: extensor carpi ulnaris muscle def: "Extensor carpi ulnaris is a muscle located in the forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP]." [Wikipedia:Extensor_carpi_ulnaris_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "ECU muscle" EXACT [] synonym: "extensor carpi ulnaris" EXACT [] synonym: "musculus extensor carpi ulnaris" EXACT [] xref: AAO:0010281 xref: EMAPA:36190 xref: FMA:38506 xref: MA:0002292 xref: NCIT:C52914 xref: SCTID:244992008 xref: UMLS:C0224272 {source="ncithesaurus:Extensor_Carpi_Ulnaris"} xref: Wikipedia:Extensor_carpi_ulnaris_muscle is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of manus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/25/Extensor_carpi_ulnaris_muscle.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray418.png" xsd:anyURI property_value: editor_note "Note that we make the insertion relationship a taxon GCI until digit numbering issues are resolved" xsd:string property_value: external_definition "Muscle of the forearm: It shares a common origin with two other muscles of the forearm. It arises from the lateral epicondyle of the humerus by two tendons: the first one is in common with the m. extensor digitorum communis longus, and the second one is broad and in common with the m. epicondylocubitalis. It is pinnately attached to the dorsal surface of the distal carpal 5-4-3.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010281", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0001527 name: abductor pollicis longus def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [Wikipedia:Abductor_pollicis_longus_muscle] subset: uberon_slim synonym: "abductor pollicis longus muscle" RELATED [Wikipedia:Abductor_pollicis_longus_muscle] synonym: "musculus abductor pollicis longus" RELATED OMO:0003011 [Wikipedia:Abductor_pollicis_longus_muscle] xref: EMAPA:36210 xref: FMA:38515 xref: MA:0002266 xref: NCIT:C52888 xref: SCTID:256671001 xref: UMLS:C0224278 {source="ncithesaurus:Abductor_Pollicis_Longus"} xref: Wikipedia:Abductor_pollicis_longus_muscle is_a: UBERON:0011534 ! abductor pollicis muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray1231.png" xsd:anyURI [Term] id: UBERON:0001528 name: radio-ulnar joint def: "A joint that connects the radius and the ulna. Examples: proximal and distal radio-ulnar joints." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "articulation of the radus and ulna" EXACT [] synonym: "radioulnar articulation" RELATED [] synonym: "radioulnar joint" EXACT [FMA:38863] xref: EMAPA:19206 xref: FMA:38863 xref: MA:0003145 xref: SCTID:264167003 is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint relationship: part_of UBERON:0002386 ! forelimb zeugopod property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/50/Forearm_labeled.png" xsd:anyURI [Term] id: UBERON:0001529 name: brachiocephalic artery def: "The short first aortic arch branch and divides into the right subclavian artery and the right common carotid artery." [MGI:csmith, MP:0010663] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brachiocephalic trunk" EXACT [MA:0001922] synonym: "innominate" BROAD [Wikipedia:Brachiocephalic_artery] synonym: "innominate artery" EXACT [Wikipedia:Brachiocephalic_artery] synonym: "truncus brachiocephalicus" EXACT OMO:0003011 [FMA:3932, FMA:TA] synonym: "truncus brachiocephalicus" RELATED OMO:0003011 [Wikipedia:Brachiocephalic_artery] xref: EFO:0002550 xref: EHDAA2:0000835 xref: EMAPA:17615 xref: FMA:3932 xref: GAID:476 xref: galen:BrachioCephalicArtery xref: MA:0001922 xref: MESH:D016122 xref: NCIT:C32814 xref: SCTID:244244002 xref: UMLS:C0006094 {source="ncithesaurus:Innominate_Artery"} xref: Wikipedia:Brachiocephalic_artery is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0007204 ! brachiocephalic vasculature relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001530 name: common carotid artery plus branches def: "A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]." [Wikipedia:Common_carotid_artery] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "a. carotis communis" RELATED OMO:0003011 [Wikipedia:Common_carotid_artery] synonym: "carotid artery" BROAD [FMA:3939] synonym: "carotid artery system" EXACT [EHDAA2:0000217] synonym: "common carotid artery" EXACT INCONSISTENT [FMA:3939] synonym: "trunk of common carotid tree" EXACT [FMA:3939] xref: CALOHA:TS-0116 xref: EHDAA2:0000217 xref: EHDAA:7331 xref: EMAPA:17855 xref: FMA:3939 xref: GAID:479 xref: MA:0001926 xref: MESH:D017536 xref: NCIT:C32352 xref: SCTID:362041005 xref: UMLS:C0162859 {source="ncithesaurus:Common_Carotid_Artery"} xref: VHOG:0000272 xref: Wikipedia:Common_carotid_artery is_a: UBERON:0004573 {source="FMA"} ! systemic artery relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! pharyngeal arch artery relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "This class represents the adult and developing structures'" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: development_notes "in birds and reptiles, develops from arch III and parts of ventral and dorsal aortae" xsd:string property_value: editor_note "we follow the FMA and treat the artery as a tree-structure - here we include the internal and external as parts. For the part that excludes the branches, see 'trunk of common carotid artery'" xsd:string [Term] id: UBERON:0001531 name: right common carotid artery plus branches def: "The rightmost of the two common carotid arteries, originating from in the neck from the brachiocephalic trunk." [UBERON:cjm] subset: human_reference_atlas subset: uberon_slim synonym: "right common carotid artery" EXACT [MA:0001928] synonym: "right common carotid artery" RELATED [FMA:3941] synonym: "trunk of right common carotid tree" EXACT [FMA:3941] xref: EMAPA:35749 xref: FMA:3941 xref: MA:0001928 xref: NCIT:C33473 xref: SCTID:362042003 xref: UMLS:C0226086 {source="ncithesaurus:Right_Common_Carotid_Artery"} xref: Wikipedia:Right_common_carotid_artery is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: external_ontology_notes "placement of the MA class here is not strictly correct, as the MA class does not include the branches" xsd:string [Term] id: UBERON:0001532 name: internal carotid artery def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to the brain and eyes[MP]." [MGI:anna] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria carotis interna" RELATED OMO:0003011 [Wikipedia:Internal_carotid_artery] synonym: "cranial carotid artery" EXACT [ZFA:0005081] synonym: "ICA" RELATED OMO:0003000 [] synonym: "internal carotid" EXACT [AAO:0010219] xref: AAO:0010219 xref: AAO:0011054 xref: BTO:0004697 xref: EFO:0001952 xref: EHDAA2:0000873 xref: EHDAA:408 xref: EHDAA:6389 xref: EMAPA:16328 xref: FMA:3947 xref: GAID:481 xref: MA:0001930 xref: MESH:D002343 xref: NCIT:C32836 xref: SCTID:362045001 xref: TAO:0005081 xref: UMLS:C0007276 {source="ncithesaurus:Internal_Carotid_Artery"} xref: VHOG:0000267 xref: Wikipedia:Internal_carotid_artery xref: XAO:0000366 xref: ZFA:0005081 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005396 {source="MA"} ! carotid artery segment relationship: develops_from UBERON:2001053 {source="cjm"} ! future internal carotid artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png" xsd:anyURI property_value: external_definition "Each of two arteries starting at the bifurcation of the common carotid arteries through which blood circulates to many structures and organs in the head. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000267", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Internal+carotid+artery"} property_value: external_definition "One of the major arteries of the head, it is the as the cranial continuation of the aortic arches and the dorsal aorta. It curves ventrally before resuming a dorsal course as it enters the head proper, and it lies ventral to the internal jugular vein. The internal carotid artery gives off palatine, ophthalmic, and cerebral branches by stage NF stage 41.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011054", ontology="AAO", source="PMID:12606281"} [Term] id: UBERON:0001533 name: subclavian artery def: "One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta." [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: unverified_taxonomic_grouping subset: vertebrate_core synonym: "arteria subclavia" EXACT OMO:0003011 [XAO:0000365] synonym: "arteria subclavia" RELATED OMO:0003011 [Wikipedia:Subclavian_artery] synonym: "arterial tree of upper limb" EXACT [] synonym: "PA" RELATED OMO:0003000 [] synonym: "pectoral artery" EXACT [] synonym: "subclavian arterial tree" EXACT [] xref: AAO:0010232 xref: EHDAA2:0001933 xref: EHDAA:4357 xref: EMAPA:17617 xref: FMA:3951 xref: GAID:511 xref: MA:0002045 xref: MESH:D013348 xref: NCIT:C33643 xref: SCTID:265790007 xref: TAO:0005086 xref: UMLS:C0038530 {source="ncithesaurus:Subclavian_Artery"} xref: Wikipedia:Subclavian_artery xref: XAO:0000365 xref: ZFA:0005086 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004573 ! systemic artery relationship: develops_from UBERON:0002457 {source="EHDAA2"} ! intersomitic artery relationship: develops_from UBERON:0005622 {source="EHDAA2"} ! right dorsal aorta relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: editor_note "Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO)" xsd:string property_value: external_definition "Artery which supplies blood via branches to the various muscles of the shoulder region and to the forelimb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010232", ontology="AAO", source="AAO:BJB"} property_value: external_definition "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib[WP]" xsd:string {source="Wikipedia:Subclavian_artery"} property_value: external_definition "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005086", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001534 name: right subclavian artery def: "The subclavian artery that supplies the right pectoral appendage." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "arteria subclavia dextra" EXACT OMO:0003011 [FMA:3953, FMA:TA] xref: EHDAA2:0004514 xref: EMAPA:37384 {source="MA:th"} xref: FMA:3953 xref: MA:0002047 xref: NCIT:C33490 xref: SCTID:244246000 xref: UMLS:C0226261 {source="ncithesaurus:Right_Subclavian_Artery"} xref: Wikipedia:Subclavian_artery is_a: UBERON:0001533 ! subclavian artery is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: development_notes "proximal part arises from right 4th aortic arch in humans" xsd:string property_value: taxon_notes "in humans, arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery" xsd:string [Term] id: UBERON:0001535 name: vertebral artery def: "The first branch of the left and right subclavian arteries that merge to form the single midline basilar artery; branches of the vertebral arteries supply the musculature of the neck." [ISBN:0-683-40008-8, MP:0011513] comment: The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria vertebralis" RELATED OMO:0003011 [Wikipedia:Vertebral_artery] synonym: "vertebral arteries" RELATED OMO:0003004 [ZFA:0005033] xref: EHDAA2:0002192 xref: EHDAA:5328 xref: EMAPA:17314 xref: FMA:3956 xref: GAID:518 xref: MA:0002077 xref: MESH:D014711 xref: NCIT:C12819 xref: SCTID:181323003 xref: TAO:0005033 xref: UMLS:C0042559 {source="ncithesaurus:Vertebral_Artery"} xref: VHOG:0000263 xref: Wikipedia:Vertebral_artery xref: ZFA:0005033 is_a: UBERON:0002458 ! spinal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/ff/Vertebral_artery.png" xsd:anyURI [Term] id: UBERON:0001536 name: left common carotid artery plus branches def: "The leftmost of the two common carotid arteries, originating from the aortic arch in the thorax." [UBERON:cjm] subset: human_reference_atlas subset: uberon_slim synonym: "left common carotid artery" EXACT [MA:0001927] synonym: "left common carotid artery" RELATED [FMA:4058] synonym: "trunk of left common carotid tree" EXACT [FMA:4058] xref: EMAPA:35491 xref: FMA:4058 xref: MA:0001927 xref: NCIT:C32956 xref: SCTID:362043008 xref: UMLS:C0226087 {source="ncithesaurus:Left_Common_Carotid_Artery"} xref: Wikipedia:Left_common_carotid_artery is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_ontology_notes "placement of the MA class here is not strictly correct, as the MA class does not include the branches" xsd:string [Term] id: UBERON:0001537 name: anterior tibial artery def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [Wikipedia:Anterior_tibial_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria tibialis anterior" RELATED OMO:0003011 [Wikipedia:Anterior_tibial_artery] xref: EMAPA:37071 {source="MA:th"} xref: FMA:43894 xref: MA:0002574 xref: NCIT:C12825 xref: SCTID:181357006 xref: UMLS:C0085816 {source="ncithesaurus:Anterior_Tibial_Artery"} xref: Wikipedia:Anterior_tibial_artery is_a: UBERON:0007610 ! tibial artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png" xsd:anyURI [Term] id: UBERON:0001538 name: posterior tibial artery def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria tibialis posterior" RELATED OMO:0003011 [Wikipedia:Posterior_tibial_artery] xref: EMAPA:37110 {source="MA:th"} xref: FMA:43895 xref: MA:0002575 xref: NCIT:C12826 xref: SCTID:181358001 xref: UMLS:C0086835 {source="ncithesaurus:Posterior_Tibial_Artery"} xref: Wikipedia:Posterior_tibial_artery is_a: UBERON:0007610 ! tibial artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png" xsd:anyURI [Term] id: UBERON:0001539 name: dorsalis pedis artery def: "A blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [Wikipedia:Dorsalis_pedis_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria dorsalis pedis" EXACT OMO:0003011 [FMA:43915, FMA:TA] synonym: "arteria dorsalis pedis" RELATED OMO:0003011 [Wikipedia:Dorsalis_pedis_artery] synonym: "dorsal artery of foot" EXACT [Wikipedia:Dorsalis_pedis_artery] xref: EMAPA:37077 {source="MA:th"} xref: FMA:43915 xref: galen:DorsalisPedisArtery xref: MA:0001942 xref: NCIT:C32478 xref: SCTID:181362007 xref: UMLS:C0226492 {source="ncithesaurus:Dorsalis_Pedis_Artery"} xref: Wikipedia:Dorsalis_pedis_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! hindlimb blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png" xsd:anyURI [Term] id: UBERON:0001540 name: peroneal artery def: "An artery that supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [Wikipedia:Peroneal_artery] subset: human_reference_atlas synonym: "arteria fibularis" EXACT OMO:0003011 [FMA:43921, FMA:TA] synonym: "fibular artery" EXACT [] xref: EMAPA:37674 {source="MA:th"} xref: FMA:43921 xref: MA:0002018 xref: NCIT:C33314 xref: SCTID:181359009 xref: UMLS:C0226476 {source="ncithesaurus:Peroneal_Artery"} xref: Wikipedia:Peroneal_artery is_a: UBERON:0035292 ! branch of posterior tibial artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/72/Fibular_artery.png" xsd:anyURI [Term] id: UBERON:0001541 name: medial plantar artery def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [Wikipedia:Medial_plantar_artery] subset: human_reference_atlas subset: uberon_slim synonym: "a. plantaris medialis" RELATED OMO:0003011 [Wikipedia:Medial_plantar_artery] xref: EMAPA:37101 {source="MA:th"} xref: FMA:43925 xref: MA:0001997 xref: NCIT:C32860 xref: NCIT:C52968 xref: SCTID:181360004 xref: UMLS:C0226479 {source="ncithesaurus:Medial_Plantar_Artery"} xref: UMLS:C1512881 xref: Wikipedia:Medial_plantar_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! hindlimb blood vessel relationship: part_of UBERON:0001538 {source="FMA"} ! posterior tibial artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png" xsd:anyURI [Term] id: UBERON:0001542 name: inguinal lymph node def: "The lymph nodes located in the groin area." [MGI:cwg, MP:0002353] subset: pheno_slim subset: uberon_slim xref: EMAPA:35431 xref: FMA:44226 xref: MA:0000737 xref: NCIT:C32801 xref: SCTID:181762005 xref: UMLS:C0729596 {source="ncithesaurus:Inguinal_Lymph_Node"} xref: Wikipedia:Inguinal_lymph_node is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node is_a: UBERON:0005173 ! abdominal segment element relationship: part_of UBERON:0008337 ! inguinal part of abdomen [Term] id: UBERON:0001543 name: popliteal lymph node def: "The lymph nodes which drain the legs; contained in the popliteal fossa." [MGI:cwg, MP:0002352, Wikipedia:Popliteal_lymph_node] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "popliteal glands" RELATED [Wikipedia:Popliteal_lymph_nodes] synonym: "popliteal lymph glands" RELATED [Wikipedia:Popliteal_lymph_nodes] synonym: "popliteal lymph node" RELATED [Wikipedia:Popliteal_lymph_nodes] xref: FMA:44227 xref: MA:0000738 xref: NCIT:C53146 xref: SCTID:279156002 xref: UMLS:C0588057 {source="ncithesaurus:Popliteal_Lymph_Node"} xref: Wikipedia:Popliteal_lymph_node is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node is_a: UBERON:0016398 ! lymph node of lower limb relationship: part_of UBERON:0001485 ! knee joint relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png" xsd:anyURI property_value: external_definition "In the popliteal fossa between biceps femoris m. and semitendinosus m.." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0001544 name: popliteal vein def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [Wikipedia:Popliteal_vein] subset: human_reference_atlas subset: uberon_slim synonym: "vena poplitea" RELATED OMO:0003011 [Wikipedia:Popliteal_vein] xref: EMAPA:37181 {source="MA:th"} xref: FMA:44327 xref: GAID:537 xref: galen:PoplitealVein xref: MA:0002197 xref: MESH:D011152 xref: NCIT:C33339 xref: SCTID:281065001 xref: UMLS:C0032652 {source="ncithesaurus:Popliteal_Vein"} xref: Wikipedia:Popliteal_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png" xsd:anyURI [Term] id: UBERON:0001545 name: anterior tibial vein def: "A vein of the lower limb that carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Anterior_tibial_vein] subset: human_reference_atlas subset: uberon_slim synonym: "venae tibiales anteriores" RELATED OMO:0003011 [Wikipedia:Anterior_tibial_vein] xref: EMAPA:37135 {source="MA:th"} xref: FMA:44331 xref: galen:AnteriorTibialVein xref: MA:0002244 xref: NCIT:C32115 xref: SCTID:281066000 xref: UMLS:C0226833 {source="ncithesaurus:Anterior_Tibial_Vein"} xref: Wikipedia:Anterior_tibial_vein is_a: UBERON:0010370 {source="MA"} ! tibial vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png" xsd:anyURI [Term] id: UBERON:0001546 name: posterior tibial vein def: "A vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_vein] subset: human_reference_atlas subset: uberon_slim synonym: "venae tibiales posteriores" RELATED OMO:0003011 [Wikipedia:Posterior_tibial_vein] xref: EMAPA:37183 {source="MA:th"} xref: FMA:44332 xref: galen:PosteriorTibialVein xref: MA:0002245 xref: NCIT:C33386 xref: SCTID:281067009 xref: UMLS:C0226832 {source="ncithesaurus:Posterior_Tibial_Vein"} xref: Wikipedia:Posterior_tibial_vein is_a: UBERON:0010370 {source="MA"} ! tibial vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png" xsd:anyURI [Term] id: UBERON:0001547 name: small saphenous vein def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [Wikipedia:Small_saphenous_vein] subset: human_reference_atlas subset: uberon_slim synonym: "lesser saphenous vein" EXACT [] synonym: "short saphenous vein" EXACT [] synonym: "vena saphena parva" EXACT OMO:0003011 [Wikipedia:Small_saphenous_vein] xref: BTO:0003272 xref: EMAPA:37187 {source="MA:th"} xref: FMA:44333 xref: galen:LesserSaphenousVein xref: MA:0002217 xref: NCIT:C33546 xref: SCTID:181404009 xref: UMLS:C0226827 {source="ncithesaurus:Short_Saphenous_Vein"} xref: Wikipedia:Small_saphenous_vein is_a: UBERON:0007318 ! saphenous vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png" xsd:anyURI [Term] id: UBERON:0001548 name: lateral marginal vein def: "A continuation of the Dorsal venous arch of the foot and is the origin of the short saphenous vein." [Wikipedia:Lateral_marginal_vein] subset: human_reference_atlas synonym: "lateral marginal vein of foot" EXACT [] synonym: "vena marginalis lateralis" EXACT [] synonym: "vena marginalis lateralis pedis" EXACT OMO:0003011 [FMA:44359, FMA:TA] xref: EMAPA:37161 {source="MA:th"} xref: FMA:44359 xref: MA:0002160 xref: Wikipedia:Lateral_marginal_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001549 name: dorsal metatarsal vein def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [Wikipedia:Dorsal_metatarsal_veins] subset: human_reference_atlas synonym: "metatarsal vein" EXACT [] synonym: "venae metatarsales dorsales" RELATED OMO:0003011 [Wikipedia:Dorsal_metatarsal_veins] xref: EMAPA:37143 {source="MA:th"} xref: FMA:44377 xref: MA:0002105 xref: NCIT:C52689 xref: UMLS:C0835053 {source="ncithesaurus:Dorsal_Metatarsal_Vein"} xref: Wikipedia:Dorsal_metatarsal_veins is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001550 name: medial marginal vein def: "A continuation of the Dorsal venous arch of the foot and is the origin of the long saphenous vein." [Wikipedia:Medial_marginal_vein] subset: human_reference_atlas synonym: "medial marginal vein of foot" EXACT [] synonym: "vena marginalis medialis" EXACT [] synonym: "vena marginalis medialis pedis" EXACT OMO:0003011 [FMA:44420, FMA:TA] xref: EMAPA:37170 {source="MA:th"} xref: FMA:44420 xref: MA:0002171 xref: Wikipedia:Medial_marginal_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001551 name: vein of hindlimb zeugopod synonym: "sural vein" EXACT [FMA:44561] xref: EMAPA:37231 {source="MA:th"} xref: FMA:44561 xref: MA:0002231 is_a: UBERON:0001638 ! vein is_a: UBERON:0004261 ! lower leg blood vessel property_value: terminology_notes "The term 'sural veins' is not sufficient to appropriately designate the complex venous system of the calf. This should be designated as soleal veins (venae solealis), the veins of the soleus muscle and gastrocnemius veins (venae gastrocnemii)" xsd:string {source="http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php"} [Term] id: UBERON:0001552 name: kidney arcuate artery def: "One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Arcuate_artery_of_the_foot] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "arcuate artery" BROAD [MA:0002583] synonym: "renal arcuate artery" EXACT [] xref: EMAPA:28215 xref: FMA:70497 xref: MA:0002583 xref: Wikipedia:Arcuate_arteries_of_the_kidney is_a: UBERON:0001637 ! artery is_a: UBERON:0003644 ! kidney arterial blood vessel relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg" xsd:anyURI [Term] id: UBERON:0001553 name: medial tarsal artery def: "The medial tarsal arteries are two or three small branches which ramify on the medial border of the foot and join the medial malleolar net-work." [Wikipedia:Medial_tarsal_arteries] subset: human_reference_atlas xref: EMAPA:37102 {source="MA:th"} xref: FMA:44598 xref: MA:0001998 xref: NCIT:C52969 xref: SCTID:67925000 xref: UMLS:C0226495 {source="ncithesaurus:Medial_Tarsal_Artery"} xref: Wikipedia:Medial_tarsal_arteries is_a: UBERON:0001637 ! artery is_a: UBERON:0003521 ! pes blood vessel relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001554 name: skin of hip def: "A zone of skin that is part of a hip region." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "hip region zone of skin" EXACT [OBOL:automatic] synonym: "hip skin" EXACT [] synonym: "hip zone of skin" EXACT [OBOL:automatic] synonym: "regio coxae zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of hip" EXACT [OBOL:automatic] synonym: "zone of skin of hip region" EXACT [OBOL:automatic] synonym: "zone of skin of regio coxae" EXACT [OBOL:automatic] xref: EMAPA:18148 xref: FMA:45282 xref: MA:0000658 xref: SCTID:181518004 is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0001464 ! hip property_value: external_ontology_notes "in MA this isa hindlimb skin" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001555 name: digestive tract def: "A tube extending from the mouth to the anus." [https://github.com/geneontology/go-ontology/issues/7549, Wikipedia:Talk\:Human_gastrointestinal_tract] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "alimentary canal" NARROW [] synonym: "alimentary tract" NARROW [] synonym: "digestive canal" RELATED [BTO:0000058] synonym: "digestive tube" EXACT [] synonym: "enteric tract" EXACT [ZFA:0000112] synonym: "gut" BROAD [] synonym: "gut tube" RELATED [] xref: AAO:0010023 xref: BILA:0000083 xref: BTO:0000511 xref: BTO:0000545 xref: EHDAA2:0000726 xref: EHDAA:518 xref: EMAPA:16247 xref: FBbt:00003125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45615 xref: galen:AlimentaryTract xref: MA:0000917 xref: MESH:D041981 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34082 xref: TAO:0000112 xref: TGMA:0001819 xref: UMLS:C0017189 {source="ncithesaurus:Gastrointestinal_Tract"} xref: VHOG:0000309 xref: WBbt:0005743 xref: ZFA:0000112 is_a: UBERON:0000025 ! tube relationship: immediate_transformation_of UBERON:0007026 {source="NCBIBook:NBK10107"} ! presumptive gut relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} relationship: never_in_taxon NCBITaxon:41324 {source="DOI:10.1371/journal.pone.0016309"} relationship: part_of UBERON:0001007 ! digestive system relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The alimentary or digestive tract, and associated organs.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000112", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "FMA also has a term 'gastrointestinal tract', but this includes the liver." xsd:string {external_ontology="FMA"} property_value: external_ontology_notes "we place the MA and EMAPA class here, although the intent is probably a smaller region. See https://github.com/obophenotype/uberon/issues/509" xsd:string {external_ontology="MA"} property_value: homology_notes "The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000309", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.203, ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} property_value: terminology_notes "we following Kardong in naming the entire tube from mouth to anus the alimentary canal. Kardong calls the portion of this tract that excludes buccal cavity and pharynx the 'alimentary canal', consider adding an extra class for this" xsd:string [Term] id: UBERON:0001556 name: lower urinary tract def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim xref: FMA:45659 xref: galen:LowerUrinaryTract xref: MA:0002636 xref: SCTID:181420004 is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001008 ! renal system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001557 name: upper respiratory tract def: "The segment of the respiratory tract that starts proximally with the nose and ends distally with the cricoid cartilage, before continuing to the trachea." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim xref: EHDAA2:0002136 xref: EMAPA:17669 xref: FMA:45661 xref: MA:0000442 xref: SCTID:361381009 xref: VHOG:0000406 xref: Wikipedia:Upper_respiratory_tract is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: mutually_spatially_disjoint_with UBERON:0001558 ! lower respiratory tract relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI property_value: external_ontology_notes "Some specify that the glottis (vocal cords) is the defining line between the upper and lower respiratory tracts;[2] yet even others make the line at the cricoid cartilage. The FMA includes nose, nasopharynx, oropharynx and larynx[WP]" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001558 name: lower respiratory tract def: "The segment of the respiratory tract that starts proximally with the trachea and includes all distal structures including the lungs[WP,modified]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lower_respiratory_tract] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "lower respiratory system" EXACT [] xref: EHDAA2:0001036 xref: EMAPA:16738 xref: FMA:45662 xref: MA:0000435 xref: SCTID:281488008 xref: VHOG:0000382 xref: Wikipedia:Lower_respiratory_tract is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI [Term] id: UBERON:0001559 name: obsolete head of organ comment: incorrect grouping synonym: "head organ" EXACT [MA:0000581] synonym: "organ head" EXACT [] is_obsolete: true consider: FMA:45729 consider: MA:0000581 [Term] id: UBERON:0001560 name: neck of organ subset: non_informative synonym: "organ neck" EXACT [] xref: FMA:45733 is_a: UBERON:0034944 {source="FMA"} ! zone of organ [Term] id: UBERON:0001561 name: subcostal artery def: "An artery that runs along the bottom of the lowest rib. They constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_artery] subset: human_reference_atlas subset: uberon_slim xref: EMAPA:19097 xref: FMA:4613 xref: MA:0002048 xref: NCIT:C53000 xref: SCTID:244243008 xref: UMLS:C0226293 {source="ncithesaurus:Subcostal_Artery"} xref: Wikipedia:Subcostal_artery is_a: UBERON:0004573 ! systemic artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001562 name: digastric muscle group def: "A group of muscles (or in some classifications, muscle bellies) that are located under the jaw and attach to the base of the cranium and typically attaches to the hyoid apparatus via a common tendon." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "digastric" EXACT [MA:0002288] synonym: "digastric" RELATED [FMA:46291] synonym: "digastric muscle" RELATED [Wikipedia:Digastric_muscle] synonym: "digastricus" RELATED [Wikipedia:Digastric_muscle] synonym: "musculus digastricus" EXACT OMO:0003011 [Wikipedia:Digastric_muscle] synonym: "musculus digastricus" RELATED [Wikipedia:Digastric_muscle] xref: EMAPA:25134 xref: FMA:46291 xref: MA:0002288 xref: NCIT:C32462 xref: SCTID:244825002 xref: UMLS:C0224155 {source="ncithesaurus:Digastric_Muscle"} xref: Wikipedia:Digastric_muscle is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle property_value: curator_notes "this class refers to the mereological sum of digastric muscles in an organism (typically two)." xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png" xsd:anyURI property_value: external_definition "The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. Wikipedia:Digastric_muscle]." xsd:string {source="Wikipedia:Digastric_muscle"} property_value: taxon_notes "In most mammals there is a common tendon between the ant. and post. muscles, which also makes a connection to the hyoid apparatus, and then the other attachment is to the base of the cranium" xsd:string {source="FEED:rd"} [Term] id: UBERON:0001563 name: longus capitis muscle def: "A muscle that arises by four tendinous slips from the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae and inserts into the inferior surface of the basilar part of the occipital bone.[WP,modified]." [Wikipedia:Longus_capitis_muscle] subset: uberon_slim synonym: "longus capitis" EXACT [MA:0002340] synonym: "longus capitus muscle" RELATED [Wikipedia:Longus_capitis_muscle] synonym: "m. rectus capitis posterior" EXACT [AAO:0010666] synonym: "musculus longus capitis" RELATED OMO:0003011 [Wikipedia:Longus_capitis_muscle] synonym: "rectus capitis anticus major" RELATED [Wikipedia:Longus_capitis_muscle] xref: AAO:0010666 xref: EMAPA:25131 xref: FMA:46308 xref: MA:0002340 xref: NCIT:C52956 xref: SCTID:244837000 xref: UMLS:C0224107 {source="ncithesaurus:Longus_Capitis"} xref: Wikipedia:Longus_capitis_muscle is_a: UBERON:0008549 {source="FMA-abduced"} ! prevertebral muscle property_value: action_notes "flexion of neck at atlanto-occipital joint" xsd:string property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7d/Longus_capitis.png" xsd:anyURI [Term] id: UBERON:0001564 name: mylohyoid muscle def: "The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking right and left mylohyoid and the mandible." [MFMO:0000084] comment: Taxon motes: mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3 subset: human_reference_atlas subset: uberon_slim synonym: "musculus mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle] synonym: "musculus mylohyoideus" RELATED OMO:0003011 [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoid" EXACT [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoideus muscle" EXACT [Wikipedia:Mylohyoid_muscle] xref: EMAPA:25136 xref: FMA:46320 xref: MA:0002344 xref: MFMO:0000084 xref: NCIT:C52962 xref: SCTID:244827005 xref: UMLS:C0224159 {source="ncithesaurus:Mylohyoid"} xref: Wikipedia:Mylohyoid_muscle is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG" xsd:anyURI property_value: external_definition "The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking R and L mylohyoid and the mandible.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001565 name: geniohyoid muscle def: "The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by the first cervical nerve (C1)." [MFMO:0000068] subset: human_reference_atlas subset: uberon_slim synonym: "genio-hyoideus" EXACT [] synonym: "genio-hyoideus muscle" EXACT [] synonym: "geniohyoid" EXACT [Wikipedia:Geniohyoid_muscle] synonym: "geniohyoideus" EXACT [Wikipedia:Geniohyoid_muscle] synonym: "geniohyoideus muscle" EXACT [Wikipedia:Geniohyoid_muscle] synonym: "m. geniohyoideus" EXACT [] synonym: "musculus geniohyoideus" RELATED OMO:0003011 [Wikipedia:Geniohyoid_muscle] xref: EMAPA:36626 xref: FMA:46325 xref: MA:0002308 xref: NCIT:C52930 xref: SCTID:244828000 xref: UMLS:C0224160 {source="ncithesaurus:Geniohyoid"} xref: Wikipedia:Geniohyoid_muscle is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle is_a: UBERON:0011151 ! jaw depressor muscle relationship: present_in_taxon NCBITaxon:9606 property_value: action_notes "draws hyoid cranially" xsd:string property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG" xsd:anyURI property_value: external_definition "The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by C1.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001566 name: cricothyroid muscle def: "Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage." [MFMO:0000324] subset: human_reference_atlas subset: uberon_slim synonym: "cricothyroid" EXACT [] synonym: "cricothyroideus" EXACT [] synonym: "M. cricothyroideus" EXACT OMO:0003011 [Wikipedia:Cricothyroid_muscle] synonym: "musculus cricothyroideus" EXACT OMO:0003011 [FMA:46417, FMA:TA] xref: EMAPA:19270 xref: FMA:46417 xref: MA:0002284 xref: MFMO:0000324 xref: NCIT:C32404 xref: SCTID:244809007 xref: UMLS:C0224178 {source="ncithesaurus:Cricothyroid_Muscle"} xref: Wikipedia:Cricothyroid_muscle is_a: UBERON:0006328 ! laryngeal intrinsic muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png" xsd:anyURI [Term] id: UBERON:0001567 name: cheek def: "A fleshy subdivision of one side of the face bounded by an eye, ear and the nose." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cheek] subset: pheno_slim subset: uberon_slim synonym: "buccae" RELATED OMO:0003011 [Wikipedia:Cheek] synonym: "jowl" RELATED [Wikipedia:Cheek] xref: BTO:0001754 xref: EMAPA:37451 {source="MA:th"} xref: FMA:46476 xref: GAID:65 xref: galen:Cheek xref: MA:0002475 xref: MESH:D002610 xref: NCIT:C13070 xref: SCTID:182325008 xref: TAO:0002113 xref: UMLS:C0007966 {source="ncithesaurus:Cheek"} xref: Wikipedia:Cheek is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0004089 ! midface relationship: part_of UBERON:8480069 ! temporofacial region property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a9/Chica_cachetona.jpg" xsd:anyURI property_value: external_definition "Surface structure that includes the scales, skin, and muscles that are located ventral and posterior to the eye.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002113", ontology="TAO", source="TAO:wd"} property_value: has_relational_adjective "buccal" xsd:string property_value: taxon_notes "In many animals the inside of the cheek is lined with mucous membrane covered with stratified squamous epithelium and supplied with secretions from buccal glands." xsd:string [Term] id: UBERON:0001568 name: muscle of larynx def: "The muscles associated with the larynx." [MP:0002263] subset: human_reference_atlas subset: pheno_slim synonym: "laryngeal muscle" EXACT [] synonym: "larynx muscle" EXACT [] synonym: "larynx muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of larynx" EXACT [OBOL:automatic] synonym: "musculi laryngeales" EXACT [] xref: BTO:0001626 xref: EMAPA:35473 xref: FMA:46562 xref: GAID:144 xref: MA:0001768 xref: MESH:D007821 xref: NCIT:C32934 xref: SCTID:181744001 xref: UMLS:C0023054 {source="ncithesaurus:Laryngeal_Muscle"} xref: Wikipedia:Muscles_of_larynx is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0004478 {source="prolog"} ! musculature of larynx relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001569 name: constrictor muscle of pharynx def: "Pharyngeal constrictor refers to one of the muscles that serves to constrict the pharynx. They include: Superior pharyngeal constrictor muscle Middle pharyngeal constrictor muscle Inferior pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_constrictor] subset: uberon_slim synonym: "pharyngeal constrictor muscle" EXACT [] xref: EMAPA:18964 xref: FMA:46620 xref: MA:0002278 xref: SCTID:244799007 xref: Wikipedia:Pharyngeal_constrictor is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ac/Musculusconstrictorpharyngissuperior.png" xsd:anyURI property_value: editor_note "TODO - evaluate taxonomic specificity - functional definition?" xsd:string [Term] id: UBERON:0001570 name: inferior pharyngeal constrictor def: "The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor_muscle] subset: uberon_slim synonym: "constrictor inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "constrictor muscle of pharynx inferior" EXACT [MA:0002279] synonym: "constrictor pharyngis inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "constrictores pharyngis caudales" EXACT [] synonym: "inferior constrictor" EXACT [FMA:46623] synonym: "inferior constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "inferior constrictor muscle" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "inferior constrictor of pharynx" EXACT [FMA:46623] synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623] synonym: "inferior pharyngeal constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "musculus constrictor pharyngis inferior" EXACT OMO:0003011 [FMA:46623, FMA:TA] synonym: "musculus constrictor pharyngis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_pharyngeal_constrictor_muscle] xref: EMAPA:18965 xref: FMA:46623 xref: MA:0002279 xref: SCTID:244803008 xref: Wikipedia:Inferior_pharyngeal_constrictor_muscle is_a: UBERON:0001566 ! cricothyroid muscle is_a: UBERON:0001569 ! constrictor muscle of pharynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png" xsd:anyURI property_value: external_definition "This is a pharyngeal arch 4/6 muscle that is integral to the pharyngeal tube, participates in oral/pharyngeal behaviors, is innervated by the pharyngeal plexus of the vagus n. and attaches to the laryngeal cartilages and the midline raphe.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001571 name: genioglossus muscle def: "Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue." [VHOG:0000847, Wikipedia:Genioglossus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "genioglossus" EXACT [] synonym: "m. genioglossus" EXACT [] synonym: "musculus genioglossus" EXACT [] xref: AAO:0010660 xref: EHDAA2:0000704 xref: EHDAA:9150 xref: EMAPA:18276 xref: FMA:46690 xref: MA:0002307 xref: NCIT:C52928 xref: SCTID:244784007 xref: UMLS:C0224194 {source="ncithesaurus:Genioglossus"} xref: VHOG:0000847 xref: Wikipedia:Genioglossus_muscle is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010660", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Genioglossus.png" xsd:anyURI property_value: external_definition "Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000847", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/genioglossus"} property_value: external_definition "Makes up bulk of tongue in frogs and salamanders; makes up entire tongue in caecilians.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010660", ontology="AAO", source="AAO:BMZ"} property_value: external_definition "see Intrinsic Tongue.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: homology_notes "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000847", ontology="VHOG", source="DOI:10.1002/dvdy.20587, DOI:10.1186/1471-213X-8-24 Table 7", source="http://bgee.unil.ch/"} property_value: taxon_notes "Makes up bulk of tongue in frogs and salamanders; makes up entire tongue in caecilians." xsd:string {source="AAO:0010660"} [Term] id: UBERON:0001572 name: hyoglossus muscle def: "A muscle that attaches to the hyopid bone and to the tongue and is innervated by cranial nerve XII." [FEED:rd] subset: human_reference_atlas subset: uberon_slim synonym: "hyoglossus" EXACT [Wikipedia:Hyoglossus] synonym: "m. hyoglossus" EXACT [] xref: AAO:0010663 xref: EMAPA:18277 xref: FMA:46691 xref: MA:0002317 xref: MFMO:0000064 xref: NCIT:C53161 xref: SCTID:244785008 xref: UMLS:C0224196 {source="ncithesaurus:Hyoglossus_Muscle"} xref: Wikipedia:Hyoglossus_muscle is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010663", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Hyoglossus.png" xsd:anyURI property_value: external_definition "Makes up part of the tongue in frogs and salamanders.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010663", ontology="AAO", source="AAO:BMZ"} property_value: external_definition "The hyoglossus is a muscle that attaches to the hyoid and tongue and is innervated by Cranial Nerve XII.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001573 name: styloglossus def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus] subset: uberon_slim synonym: "musculus styloglossus" RELATED OMO:0003011 [Wikipedia:Styloglossus] synonym: "syloglossus muscle" EXACT [] xref: EMAPA:18279 xref: FMA:46692 xref: MA:0002387 xref: NCIT:C53071 xref: UMLS:C0224195 {source="ncithesaurus:Styloglossus"} xref: Wikipedia:Styloglossus is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png" xsd:anyURI property_value: external_definition "Styloglossus is a muscle that attaches to the tongue and stylohyal and is innervated by Cranial Nerve XII.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001574 name: palatoglossus muscle def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]." [Wikipedia:Palatoglossus_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "musculus palatoglossus" RELATED OMO:0003011 [Wikipedia:Palatoglossus_muscle] synonym: "palatoglossal" EXACT [] synonym: "palatoglossal muscle" EXACT [] synonym: "palatoglossus" EXACT [] xref: EMAPA:18278 xref: FMA:46697 xref: MA:0002351 xref: NCIT:C53170 xref: SCTID:244783001 xref: UMLS:C1704249 {source="ncithesaurus:Palatoglossus_Muscle"} xref: Wikipedia:Palatoglossus_muscle is_a: UBERON:0000378 ! tongue muscle is_a: UBERON:0003682 ! palatal muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png" xsd:anyURI property_value: external_definition "Palatoglossus is a muscle that attaches to the soft palate and the tongue and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001575 name: extrinsic muscle of tongue def: "A muscle organ that attaches the tongue to some other structure." [https://github.com/obophenotype/uberon/issues/331, Wikipedia:Muscles_of_tongue] subset: human_reference_atlas synonym: "extrinsic lingual muscle" EXACT [] synonym: "extrinsic tongue muscle" EXACT [] xref: EHDAA2:0002063 xref: EHDAA:9148 xref: EMAPA:18275 xref: FMA:46699 xref: MA:0002296 xref: SCTID:244782006 xref: VHOG:0000825 is_a: UBERON:0000378 {is_inferred="true"} ! tongue muscle relationship: immediate_transformation_of UBERON:0011332 ! extrinsic tongue pre-muscle mass relationship: present_in_taxon NCBITaxon:9606 property_value: function_notes "main functions are altering the tongue's position allowing for protrusion, retraction, and side-to-side movement" xsd:string {source="WP"} property_value: homology_notes "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000825", ontology="VHOG", source="DOI:10.1002/dvdy.20587 Kusakabe R, Kuratani S, Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"} property_value: structure_notes "All intrinsic and extrinsic muscles of the tongue are supplied by the hypoglossal nerve (CN XII), except for one of the extrinsic muscles, palatoglossus, which is innervated by the Vagus nerve CN X of the pharyngeal plexus." xsd:string {source="WP"} [Term] id: UBERON:0001576 name: intrinsic muscle of tongue def: "The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII." [http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop] subset: human_reference_atlas synonym: "intrinsic lingual muscle" EXACT [] synonym: "intrinsic tongue muscle" EXACT [] xref: EHDAA2:0002064 xref: EHDAA:9152 xref: EMAPA:18280 xref: FMA:46701 xref: MA:0002327 xref: SCTID:244788005 xref: VHOG:0000748 is_a: UBERON:0000378 {is_inferred="true"} ! tongue muscle is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord relationship: part_of UBERON:0001723 ! tongue relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: function_notes "The main function of the intrinsic muscles is to provide shape. They are not involved with changing the position of the tongue and are not attached to bone" xsd:string {source="WP"} property_value: homology_notes "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000748", ontology="VHOG", source="DOI:10.1002/dvdy.20587 Kusakabe R, Kuratani S, Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001577 name: facial muscle def: "A muscle innervated by a facial nerve." [FEED:rd] subset: pheno_slim subset: uberon_slim synonym: "cranial-facial muscle" RELATED [EMAPA:25133] synonym: "cranio-facial muscle" RELATED [EMAPA:25133] synonym: "craniofacial muscle" RELATED [EMAPA:25133] synonym: "face muscle" EXACT [FMA:46751] synonym: "face muscle organ" EXACT [OBOL:automatic] synonym: "facial muscle" EXACT [FMA:46751, XAO:0001013] synonym: "facial muscle proper" EXACT [] synonym: "facial nerve innervated muscle" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "facial nerve muscle" EXACT [] synonym: "mimetic muscles" RELATED [Wikipedia:Facial_muscles] synonym: "muscle of face" EXACT [FMA:46751] synonym: "muscle of facil expression" RELATED [Wikipedia:Facial_muscles] synonym: "muscle organ of face" EXACT [OBOL:automatic] synonym: "muscles of facial expression" RELATED [Wikipedia:Facial_muscles] synonym: "musculi faciei" RELATED OMO:0003011 [Wikipedia:Facial_muscles] xref: FMA:46751 xref: GAID:143 xref: MA:0003160 xref: MESH:D005152 xref: MFMO:0000005 xref: NCIT:C13073 xref: SCTID:25903009 xref: UMLS:C0015460 {source="ncithesaurus:Facial_Muscle"} xref: Wikipedia:Facial_muscles xref: XAO:0001013 is_a: UBERON:0015789 ! cranial or facial muscle relationship: develops_from UBERON:0003066 {source="FEED", source="Wikipedia"} ! pharyngeal arch 2 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png" xsd:anyURI [Term] id: UBERON:0001578 name: orbicularis oculi muscle def: "A circumorbital muscle in the face that closes the eyelid[HP]." [Wikipedia:Orbicularis_oculi_muscle] comment: It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [Wikipedia:Orbicularis_oculi_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "musculus orbicularis oculi" RELATED OMO:0003011 [Wikipedia:Orbicularis_oculi_muscle] synonym: "orbicularis oculi" EXACT [Wikipedia:Orbicularis_oculi_muscle] synonym: "tensor tarsi" RELATED [Wikipedia:Orbicularis_oculi_muscle] xref: EMAPA:35619 xref: FMA:46779 xref: MA:0001254 xref: NCIT:C52886 xref: SCTID:244726006 xref: UMLS:C0224122 {source="ncithesaurus:Orbicularis_Oculi"} xref: Wikipedia:Orbicularis_oculi_muscle is_a: UBERON:0003660 {source="MA"} ! eyelid muscle is_a: UBERON:0004277 ! eye muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png" xsd:anyURI [Term] id: UBERON:0001579 name: olfactory nerve def: "Nerve that carries information from the olfactory epithelium to the olfactory bulb[Butler and Hodos]." [ISBN:0471209627, Wikipedia:Olfactory_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "1n" BROAD OMO:0003000 [BIRNLEX:1319, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-I" RELATED [] synonym: "cranial nerve I" RELATED [] synonym: "fila olfactoria" RELATED [BTO:0003648] synonym: "first cranial nerve" EXACT [] synonym: "nerve I" RELATED [NeuroNames:32] synonym: "nerve of smell" RELATED [BTO:0003648] synonym: "nervus olfactorius" RELATED OMO:0003011 [BTO:0003648, Wikipedia:Olfactory_nerve] synonym: "nervus olfactorius [i]" EXACT OMO:0003011 [FMA:46787, FMA:TA] synonym: "olfactoria fila" RELATED [NeuroNames:32] synonym: "olfactory fila" RELATED [BTO:0003648] synonym: "olfactory I" EXACT [EHDAA2:0001293] synonym: "olfactory i nerve" EXACT [] synonym: "olfactory nerve [I]" EXACT [] xref: AAO:0010088 xref: BAMS:1n xref: BAMS:ln xref: BIRNLEX:1319 xref: BTO:0003648 xref: EHDAA2:0001293 xref: EHDAA:6672 xref: EMAPA:17797 xref: FMA:46787 xref: GAID:830 xref: HBA:9300 xref: MA:0001096 xref: MBA:840 xref: MESH:D009832 xref: NCIT:C12759 xref: neuronames:32 {source="BIRNLEX:1319"} xref: SCTID:180937006 xref: TAO:0000249 xref: UMLS:C0028938 {source="ncithesaurus:Olfactory_Nerve", source="BIRNLEX:1319"} xref: UMLS:C1268984 {source="BIRNLEX:1319"} xref: VHOG:0000703 xref: Wikipedia:Olfactory_nerve xref: XAO:0000426 xref: ZFA:0000249 is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003050 {source="ISBN:0471888893"} ! olfactory placode relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png" xsd:anyURI property_value: external_definition "Nerve that carries information from the olfactory epithelium through the olfactory bulb to the olfactory cortex of the telencephalon.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010088", ontology="AAO", source="AAO:DSM"} property_value: external_definition "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb[FMA:46787]." xsd:string {source="FMA:46787"} property_value: external_definition "The 1st cranial nerve. The olfactory nerve conveys the sense of smell. It is formed by the axons of OLFACTORY RECEPTOR NEURONS which project from the olfactory epithelium (in the nasal epithelium) to the OLFACTORY BULB[MESH:A08.800.800.120.640]." xsd:string {source="MESH:A08.800.800.120.640"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000703", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: taxon_notes "connects to main OB (in taxa where main/accessory distinction is important)" xsd:string [Term] id: UBERON:0001580 name: levator labii superioris def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [Wikipedia:Levator_labii_superioris] subset: uberon_slim synonym: "musculus levator labii superioris" RELATED OMO:0003011 [Wikipedia:Levator_labii_superioris] xref: EMAPA:37503 {source="MA:th"} xref: FMA:46805 xref: MA:0002333 xref: MFMO:0000136 xref: NCIT:C53164 xref: UMLS:C1704248 {source="ncithesaurus:Levator_Labii_Superioris"} xref: Wikipedia:Levator_labii_superioris is_a: UBERON:0001577 {source="FEED"} ! facial muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png" xsd:anyURI [Term] id: UBERON:0001581 name: depressor labii inferioris def: "A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip, orbicularis oris muscle, and mandible, and superficial and lateral to the mentalis muscle. See Diogo et al., 2009; Burrows et al., 2011)." [MFMO:0000123] subset: uberon_slim xref: EMAPA:37516 {source="MA:th"} xref: FMA:46816 xref: MA:0002287 xref: MFMO:0000123 xref: NCIT:C53152 xref: UMLS:C0224119 {source="ncithesaurus:Depressor_Labii_Inferioris"} xref: Wikipedia:Depressor_labii_inferioris_muscle is_a: UBERON:0001577 {is_inferred="true"} ! facial muscle is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0015212 ! lateral structure property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png" xsd:anyURI [Term] id: UBERON:0001582 name: buccinator muscle def: "The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior." [FEED:cw, FEED:rd, http://www.feedexp.org/, MFMO:0000002] subset: human_reference_atlas subset: uberon_slim synonym: "buccinator" EXACT [] synonym: "buccinatorius" RELATED [MFMO:0000002] synonym: "musculus buccinator" EXACT [] synonym: "musculus buccinator" RELATED OMO:0003011 [Wikipedia:Buccinator_muscle] synonym: "trumpeters muscle" NARROW [MFMO:0000002, NCBITaxon:9606] xref: EMAPA:37453 {source="MA:th"} xref: FMA:46834 xref: MA:0002272 xref: MFMO:0000002 xref: NCIT:C53150 xref: SCTID:244747005 xref: UMLS:C0224121 {source="ncithesaurus:Buccinator"} xref: Wikipedia:Buccinator_muscle is_a: UBERON:0001577 ! facial muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg" xsd:anyURI property_value: editor_note "logical definition provided by FEED" xsd:string [Term] id: UBERON:0001583 name: extrinsic auricular muscle def: "Auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]." [http://www.daviddarling.info/encyclopedia/A/auricle.html, Wikipedia:Auriculares_muscles] xref: EMAPA:37527 {source="MA:th"} xref: FMA:46854 xref: MA:0001230 xref: SCTID:244758001 xref: Wikipedia:Auriculares_muscles is_a: UBERON:0001595 ! auricular muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/00/Gray906.png" xsd:anyURI property_value: external_ontology_notes "Wikipedia topic refers to the extrinsic auricular muscles" xsd:string [Term] id: UBERON:0001584 name: left subclavian artery def: "The subclavian artery that supplies the left pectoral appendage." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "arteria subclavia (sinistra)" EXACT OMO:0003011 [FMA:4694, FMA:TA] xref: EMAPA:37100 {source="MA:th"} xref: FMA:4694 xref: MA:0002046 xref: NCIT:C32972 xref: SCTID:244245001 xref: UMLS:C0226262 {source="ncithesaurus:Left_Subclavian_Artery"} xref: Wikipedia:Subclavian_artery is_a: UBERON:0001533 ! subclavian artery is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: development_notes "arises from left intersegmental 6th artery in the region of the 6th -7th cervical segment in humans" xsd:string property_value: taxon_notes "in humans, branches off the arch of aorta" xsd:string [Term] id: UBERON:0001585 name: anterior vena cava def: "A vein that carries deoxygenated blood from the upper half of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Superior_vena_cava] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cranial vena cava" RELATED [VHOG:0001195] synonym: "precava" RELATED [] synonym: "superior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "superior vena cava" EXACT [FMA:4720] synonym: "vena cava superior" RELATED OMO:0003011 [BTO:0002683, Wikipedia:Superior_vena_cava] synonym: "vena maxima" RELATED OMO:0003011 [Wikipedia:Superior_vena_cava] xref: BTO:0002683 xref: EHDAA2:0001962 xref: EHDAA:8726 xref: EMAPA:18417 xref: FMA:4720 xref: GAID:549 xref: galen:SuperiorVenaCava xref: MA:0000481 xref: MESH:D014683 xref: NCIT:C12816 xref: SCTID:181368006 xref: UMLS:C0042459 {source="ncithesaurus:Superior_Vena_Cava"} xref: VHOG:0001195 xref: Wikipedia:Superior_vena_cava is_a: UBERON:0004087 ! vena cava relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b4/Venenwinkel.png" xsd:anyURI property_value: homology_notes "Phylogenetic modifications within this basic pattern of arteries and veins are largely correlated with functional changes. In the transition from water to land, gills gave way to lungs, accompanied by the establishment of a pulmonary circulation. In some fishes and certainly in tetrapods, the cardinal veins become less involved in blood return. Instead, the composite, prominent postcava (posterior vena cava) arose to drain the posterior part of the body and the precava (anterior vena cava) developed to drain the anterior part of the body.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001195", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.454-455", source="http://bgee.unil.ch/"} property_value: taxon_notes "The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green)." xsd:string [Term] id: UBERON:0001586 name: internal jugular vein def: "One of two jugular veins that collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [Wikipedia:Internal_jugular_vein] subset: human_reference_atlas subset: uberon_slim synonym: "internal jugular" EXACT [EHDAA2:0000877] synonym: "internal jugular venous tree" EXACT [] synonym: "vena jugularis interna" RELATED OMO:0003011 [Wikipedia:Internal_jugular_vein] xref: AAO:0010236 xref: EHDAA2:0000877 xref: EHDAA:5407 xref: EMAPA:17620 xref: FMA:4724 xref: galen:InternalJugularVein xref: MA:0002157 xref: NCIT:C32849 xref: RETIRED_EHDAA2:0000878 xref: SCTID:181372005 xref: UMLS:C0226550 {source="ncithesaurus:Internal_Jugular_Vein"} xref: Wikipedia:Internal_jugular_vein xref: XAO:0000382 is_a: UBERON:0004711 ! jugular vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray562.png" xsd:anyURI property_value: external_definition "Vein which receives many veins draining the palate, brain, and the orbital, nasal, and auditory regions.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010236", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001587 name: subclavian vein def: "The subclavian vein is a paired large vein, one on either side of the body. Their diameter is approximately that of the smallest finger." [Wikipedia:Subclavian_vein] subset: human_reference_atlas subset: uberon_slim synonym: "subclavian venous tree" EXACT [] synonym: "vena subclavia" EXACT OMO:0003011 [Wikipedia:Subclavian_vein] xref: AAO:0010510 xref: EHDAA2:0001934 xref: EHDAA:4455 xref: EMAPA:17621 xref: FMA:4725 xref: GAID:546 xref: galen:SubclavianVein xref: MA:0002221 xref: MESH:D013350 xref: NCIT:C12794 xref: SCTID:181388005 xref: UMLS:C0038532 {source="ncithesaurus:Subclavian_Vein"} xref: Wikipedia:Subclavian_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png" xsd:anyURI property_value: external_definition "Vein which collects blood from the forelimb via the brachial veins and from the muscles and skin of the trunk via the anterior epigastric and lateral veins.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010510", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001588 name: vertebral vein def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [Wikipedia:Vertebral_vein] subset: human_reference_atlas subset: uberon_slim synonym: "vena vertebralis" RELATED OMO:0003011 [Wikipedia:Vertebral_vein] xref: AAO:0010509 xref: EMAPA:36271 xref: FMA:4727 xref: MA:0002262 xref: NCIT:C53145 xref: SCTID:303961000 xref: UMLS:C0226560 {source="ncithesaurus:Vertebral_Vein"} xref: Wikipedia:Vertebral_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray563.png" xsd:anyURI property_value: external_definition "Vein which collects blood from the muscles of the neck and drains into the internal jugular.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010509", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001589 name: internal thoracic vein def: "A vessel that drains the chest wall and breats and arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein." [Wikipedia:Internal_thoracic_vein] subset: human_reference_atlas subset: uberon_slim synonym: "internal mammary vein" RELATED INCONSISTENT [Wikipedia:Internal_thoracic_vein] synonym: "vena thoracica interna" RELATED OMO:0003011 [Wikipedia:Internal_thoracic_vein] xref: EMAPA:18641 xref: FMA:4729 xref: MA:0002237 xref: NCIT:C52698 xref: SCTID:281056008 xref: UMLS:C0226633 {source="ncithesaurus:Internal_Thoracic_Vein"} xref: Wikipedia:Internal_thoracic_vein is_a: UBERON:0005194 {source="MA"} ! thoracic vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png" xsd:anyURI [Term] id: UBERON:0001590 name: pericardiacophrenic vein def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins] subset: human_reference_atlas synonym: "venae pericardiacophrenicae" RELATED OMO:0003011 [Wikipedia:Pericardiacophrenic_veins] xref: EMAPA:37178 {source="MA:th"} xref: FMA:4742 xref: MA:0002187 xref: NCIT:C53061 xref: SCTID:361626007 xref: UMLS:C0501112 {source="ncithesaurus:Pericardiacophrenic_Vein"} xref: Wikipedia:Pericardiacophrenic_veins is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png" xsd:anyURI [Term] id: UBERON:0001591 name: thymic vein def: "A vein that drains blood from the thymus." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "thymic tributary of brachiocephalic vein" EXACT [] synonym: "vena thymica" EXACT OMO:0003011 [Wikipedia:Thymic_veins] synonym: "venae thymicae" RELATED OMO:0003011 [Wikipedia:Thymic_veins] xref: EMAPA:36325 xref: FMA:4747 xref: MA:0002246 xref: NCIT:C53143 xref: SCTID:303432009 xref: UMLS:C0226698 {source="ncithesaurus:Thymic_Vein"} xref: Wikipedia:Thymic_veins is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001592 name: bronchial vein def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [Wikipedia:Bronchial_veins] subset: human_reference_atlas subset: uberon_slim synonym: "bronchial venous tree" EXACT [] xref: EMAPA:36284 xref: FMA:4749 xref: MA:0002088 xref: NCIT:C53031 xref: SCTID:198293000 xref: UMLS:C0226650 {source="ncithesaurus:Bronchial_Vein"} xref: Wikipedia:Bronchial_veins is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001593 name: venous plexus def: "A congregation of multiple veins." [Wikipedia:Venous_plexus] subset: uberon_slim synonym: "plexus venosus" RELATED OMO:0003011 [Wikipedia:Venous_plexus] synonym: "rete venosum" RELATED OMO:0003011 [Wikipedia:Venous_plexus] synonym: "venous network" EXACT [] xref: EMAPA:36327 xref: FMA:4767 xref: MA:0000069 xref: SCTID:322151008 xref: Wikipedia:Venous_plexus is_a: UBERON:0004537 ! blood vasculature is_a: UBERON:0005629 ! vascular plexus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI [Term] id: UBERON:0001594 name: azygos vein def: "An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]." [MP:0011569, Wikipedia:Azygos_vein] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "azygos venous tree" EXACT [] synonym: "vena azygos" RELATED OMO:0003011 [Wikipedia:Azygos_vein] xref: EMAPA:18250 xref: FMA:4838 xref: GAID:528 xref: galen:AzygosVein xref: MA:0002085 xref: MESH:D001401 xref: NCIT:C53029 xref: UMLS:C0004526 {source="ncithesaurus:Azygos_Vein"} xref: Wikipedia:Azygos_vein is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0008268 {source="ISBN:0443065837"} ! right supracardinal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png" xsd:anyURI property_value: editor_note "check development relationships in different species" xsd:string [Term] id: UBERON:0001595 name: auricular muscle def: "A muscle that is part of the pinna and is attached to the auricular cartilage." [http://orcid.org/0000-0002-6601-2165] synonym: "attolens aurem muscle" RELATED [Wikipedia:Auricular_muscles] synonym: "attrahens aurem muscle" RELATED [Wikipedia:Auricular_muscles] synonym: "auriclular" BROAD [] synonym: "auriculares" RELATED [Wikipedia:Auricular_muscles] synonym: "auriculares anterior" RELATED [Wikipedia:Auricular_muscles] synonym: "auriculares muscles" RELATED [Wikipedia:Auricular_muscles] synonym: "auricularis" RELATED [Wikipedia:Auricular_muscles] synonym: "auricularis muscle" RELATED [Wikipedia:Auricular_muscles] synonym: "auricularis muscles" RELATED [Wikipedia:Auricular_muscles] synonym: "muscle of auricle" EXACT [] synonym: "musculi auriculares" EXACT OMO:0003011 [Wikipedia:Auricular_muscles] synonym: "temporoparietalis" RELATED [Wikipedia:Auricular_muscles] xref: EMAPA:35159 xref: FMA:48966 xref: MA:0001229 xref: SCTID:244757006 xref: Wikipedia:Auricular_muscles is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001757 {source="MA"} ! pinna property_value: action_notes "In some mammals these muscles can adjust the direction of the pinna. In humans these muscles possess very little action. The auricularis anterior draws the auricula forward and upward; the Auricularis superior slightly raises it; and the Auricularis posterior draws it backward." xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png" xsd:anyURI [Term] id: UBERON:0001596 name: intrinsic auricular muscle def: "Auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis." [http://www.daviddarling.info/encyclopedia/A/auricle.html] xref: EMAPA:37528 {source="MA:th"} xref: FMA:48967 xref: MA:0001231 xref: SCTID:244762007 is_a: UBERON:0001595 {source="FMA"} ! auricular muscle [Term] id: UBERON:0001597 name: masseter muscle def: "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches of the trigeminal nerve (CN V), and attaches to mandible and zygomatic arch." [DOI:10.1093/icb/icr067, MFMO:0000075] subset: efo_slim subset: feed_aligned subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "masseter" EXACT [BTO:0001755, FMA:48996, MA:0002343] synonym: "musculus masseter" RELATED OMO:0003011 [Wikipedia:Masseter_muscle] xref: BTO:0001755 xref: EFO:0001424 xref: EHDAA2:0001067 xref: EHDAA:10561 xref: EMAPA:25135 xref: FMA:48996 xref: MA:0002343 xref: MESH:D008406 xref: MFMO:0000075 xref: NCIT:C13074 xref: SCTID:181738000 xref: UMLS:C0024876 {source="ncithesaurus:Masseter_Muscle"} xref: VHOG:0000823 xref: Wikipedia:Masseter_muscle is_a: UBERON:0003681 {source="FMA"} ! masticatory muscle relationship: part_of UBERON:0001567 {source="FMA"} ! cheek relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg" xsd:anyURI property_value: homology_notes "The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000823", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.333-334 and same reference Table 10-4", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/540" xsd:anyURI property_value: taxon_notes "The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati)" xsd:string {source="VHOG"} property_value: taxon_notes "The masseter is a jaw muscle of therapsids derived from the m. adductor mandibulae externus, which originates in the adductor chamber (in the temporal fenestra) and inserts on the coronoid process and internal surface of the lower jaw.[Palaeos]" xsd:string [Term] id: UBERON:0001598 name: temporalis muscle def: "Pharyngeal arch 1 muscle that is innervated by the deep temporal branches of the trigeminal nerve and attaches to the wall of the braincase (including the cranial vault) and mandible." [MFMO:0000085] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "jaw adductor muscle" BROAD [] synonym: "musculus temporalis" EXACT OMO:0003011 [FMA:49006, FMA:TA] synonym: "musculus temporalis" RELATED OMO:0003011 [Wikipedia:Temporal_muscle] synonym: "temporal muscle" EXACT [] synonym: "temporalis" EXACT [MA:0002390] xref: EHDAA2:0002001 xref: EHDAA:10565 xref: EMAPA:25138 xref: FMA:49006 xref: GAID:148 xref: MA:0002390 xref: MESH:D013703 xref: NCIT:C33743 xref: SCTID:181739008 xref: UMLS:C0039487 {source="ncithesaurus:Temporal_Muscle"} xref: VHOG:0000929 xref: Wikipedia:Temporal_muscle is_a: UBERON:0003681 ! masticatory muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png" xsd:anyURI property_value: external_definition "Pharyngeal arch 1 muscle that is innervated by the deep temporal nerves and attaches to the wall of the braincase and mandible.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_definition "the superior-most masticatory muscle whose action is closing the jaws; its posterior portion retracts the mandible" xsd:string {source="MP:0004239"} property_value: homology_notes "The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000929", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.333-334 and Table 10-4", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001599 name: stapedius muscle def: "The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "musculus stapedius" RELATED OMO:0003011 [Wikipedia:Stapedius_muscle] synonym: "stapedius" EXACT [EHDAA2:0001909] xref: EHDAA:9029 xref: EMAPA:18586 xref: FMA:49027 xref: GAID:164 xref: MA:0001220 xref: MESH:D013198 xref: NCIT:C33611 xref: SCTID:244780003 xref: UMLS:C0038151 {source="ncithesaurus:Stapedius_Muscle"} xref: Wikipedia:Stapedius_muscle is_a: UBERON:0001577 ! facial muscle is_a: UBERON:0004113 ! muscle of auditory ossicle relationship: develops_from UBERON:0010929 ! stapedius pre-muscle condensation relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png" xsd:anyURI property_value: homology_notes "The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000813", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.398", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001600 name: tensor tympani alt_id: UBERON:0005238 def: "The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "eustachian muscle" EXACT [] synonym: "M. tensor tympani" RELATED [Wikipedia:Tensor_tympani_muscle] synonym: "musculus tensor tympani" RELATED OMO:0003011 [Wikipedia:Tensor_tympani_muscle] synonym: "tensor tympani muscle" EXACT [Wikipedia:Tensor_tympani_muscle] synonym: "tympanic muscle" RELATED [Wikipedia:Tensor_tympani_muscle] xref: EHDAA:10167 xref: EHDAA:10191 xref: EMAPA:18587 xref: FMA:49028 xref: GAID:166 xref: MA:0001221 xref: MESH:D013719 xref: NCIT:C33748 xref: SCTID:244779001 xref: UMLS:C0039529 {source="ncithesaurus:Tensor_Tympani"} xref: VHOG:0000698 xref: Wikipedia:Tensor_tympani_muscle is_a: UBERON:0004113 ! muscle of auditory ossicle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: develops_from UBERON:0010935 ! tensor tympani pre-muscle condensation relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png" xsd:anyURI property_value: homology_notes "The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000698", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.333-334 and same reference Table 10-4", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001601 name: extra-ocular muscle alt_id: UBERON:0006229 def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "extra-ocular skeletal muscle" EXACT [] synonym: "extraocular muscle" EXACT [FMA:49033] synonym: "extraocular musculature" EXACT [ZFA:0000511] synonym: "extraocular skeletal muscle" EXACT [MA:0001271] synonym: "extrinsic eye muscle" EXACT [OBOL:automatic] synonym: "extrinsic muscle of eyeball" EXACT [FMA:49033] synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482] synonym: "musculi externi bulbi oculi" RELATED OMO:0003011 [Wikipedia:Extraocular_muscles] xref: AAO:0010028 xref: BTO:0001579 xref: CALOHA:TS-0305 xref: EFO:0001921 xref: EHDAA2:0000482 xref: EHDAA:5729 xref: EMAPA:18234 xref: FMA:49033 xref: MA:0001271 xref: MESH:D009801 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:181150000 xref: TAO:0000511 xref: VHOG:0000549 xref: Wikipedia:Extraocular_muscles xref: ZFA:0000511 is_a: UBERON:0004277 ! eye muscle is_a: UBERON:0010959 ! craniocervical muscle relationship: develops_from UBERON:0006230 {source="EHDAA2"} ! extrinsic ocular pre-muscle mass relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye relationship: part_of UBERON:0035639 {source="HPO:pr"} ! ocular adnexa relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg" xsd:anyURI property_value: development_notes "Myofibers in extraocular muscles are derived from mesoderm, whereas muscle connective tissue cells arise from neural crest.[PMID:16638982]" xsd:string property_value: editor_note "todo - resolve discrepancies in which muscles are considered extra-ocular" xsd:string property_value: external_definition "Any of the six small muscles that control movement of the eyeball within the socket. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000549", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/extraocular+muscle"} property_value: external_definition "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010028", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate." xsd:string {external_ontology="BTO"} property_value: has_relational_adjective "extraocular" xsd:string property_value: homology_notes "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these (extrinsic ocular) muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000549", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"} property_value: taxon_notes "Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi." xsd:string [Term] id: UBERON:0001602 name: medial rectus extraocular muscle alt_id: UBERON:0004836 def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus_muscle] comment: Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "m. rectus medialis" EXACT [] synonym: "medial recti" RELATED OMO:0003004 [ZFA:0000301] synonym: "medial rectus" EXACT [FMA:49037] synonym: "medial rectus extraocular muscle" EXACT [MA:0001281] synonym: "medial rectus muscle" EXACT [] synonym: "musculus rectus medialis" EXACT [AAO:0010113] synonym: "musculus rectus medialis bulbi" RELATED OMO:0003011 [Wikipedia:Medial_rectus_muscle] xref: AAO:0010113 xref: FMA:49037 xref: MA:0001281 xref: NCIT:C33068 xref: SCTID:181151001 xref: TAO:0000301 xref: UMLS:C0582820 {source="ncithesaurus:Medial_Rectus_Muscle"} xref: VHOG:0001127 xref: Wikipedia:Medial_rectus_muscle xref: ZFA:0000301 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle relationship: part_of UBERON:0002376 ! cranial muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png" xsd:anyURI property_value: homology_notes "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001127", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001603 name: lateral rectus extra-ocular muscle alt_id: UBERON:0004837 def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "lateral extraocular muscle" RELATED [] synonym: "lateral recti" RELATED OMO:0003004 [ZFA:0000383] synonym: "lateral rectus" EXACT [FMA:49038] synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280] synonym: "lateral rectus muscle" EXACT [] synonym: "M. rectus lateralis" EXACT [] synonym: "musculus rectus lateralis" EXACT [AAO:0010107] synonym: "musculus rectus lateralis bulbi" RELATED OMO:0003011 [Wikipedia:Lateral_rectus_muscle] synonym: "posterior rectus" EXACT [ZFA:0000383, ZFIN:ZDB-PUB-970121-6] xref: AAO:0010107 xref: FMA:49038 xref: MA:0001280 xref: NCIT:C32945 xref: SCTID:181152008 xref: TAO:0000383 xref: UMLS:C0582821 {source="ncithesaurus:Lateral_Rectus_Muscle"} xref: VHOG:0001129 xref: Wikipedia:Lateral_rectus_muscle xref: ZFA:0000383 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png" xsd:anyURI property_value: external_definition "Cranial nerve VI innervated; lateral in the rectus group.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010107", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001129", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001604 name: levator palpebrae superioris def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris] subset: pheno_slim subset: uberon_slim xref: EMAPA:36652 xref: FMA:49041 xref: MA:0001272 xref: NCIT:C52802 xref: SCTID:244774006 xref: UMLS:C0224134 {source="ncithesaurus:Levator_Palpebrae_Superioris"} xref: Wikipedia:Levator_palpebrae_superioris is_a: UBERON:0001601 {source="FMA"} ! extra-ocular muscle relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png" xsd:anyURI [Term] id: UBERON:0001605 name: ciliary muscle def: "The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Bowman`s muscles" RELATED [BTO:0000654] synonym: "ciliaris" RELATED [Wikipedia:Ciliary_muscle] synonym: "musculus ciliaris" RELATED OMO:0003011 [Wikipedia:Ciliary_muscle] synonym: "musculus ciliarus" EXACT [BTO:0000654] xref: BTO:0000654 xref: EMAPA:35240 xref: FMA:49151 xref: MA:0001269 xref: NCIT:C32315 xref: SCTID:280862009 xref: UMLS:C0559230 {source="ncithesaurus:Ciliary_Muscle"} xref: Wikipedia:Ciliary_muscle is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png" xsd:anyURI [Term] id: UBERON:0001606 name: muscle of iris subset: uberon_slim synonym: "iris muscle" EXACT [] synonym: "iris muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of iris" EXACT [OBOL:automatic] xref: FMA:49154 xref: MA:0001287 xref: SCTID:280888007 xref: Wikipedia:Iris_muscle is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle relationship: part_of UBERON:0001769 ! iris property_value: editor_note "revisit this, see issue #331" xsd:string property_value: taxon_notes "in aves, stromal mesenchymal cells may migrate to the iris and become skeletal" xsd:string property_value: taxon_notes "The muscle cells of the iris are smooth muscle in mammals and amphibians, but are striated muscle in birds and reptiles. Many fish have neither, and, as a result, their irides are unable to dilate and contract, so that the pupil always remains of a fixed size[Romer, via WP]" xsd:string [Term] id: UBERON:0001607 name: sphincter pupillae def: "A sphincter muscle that is part of the iris." [Wikipedia:Iris_sphincter_muscle] subset: uberon_slim synonym: "circular fibers" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "constrictor pupillae" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "iris constrictor" RELATED [] synonym: "iris constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "iris sphincter" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "iris sphincter muscle" EXACT [BTO:0000656] synonym: "M. sphincter pupillae" EXACT [] synonym: "m. sphincter pupillae" RELATED OMO:0003011 [Wikipedia:Iris_sphincter_muscle] synonym: "musculus sphincter pupillae" EXACT [BTO:0000656] synonym: "pupillary constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "pupillary sphincter" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "pupillary sphincter muscle" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "sphincter muscle of pupil" EXACT [BTO:0000656] synonym: "sphincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "sphincter pupillae muscle" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "spincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle] xref: BTO:0000656 xref: EMAPA:35788 xref: FMA:49157 xref: MA:0001289 xref: NCIT:C33586 xref: SCTID:280889004 xref: UMLS:C0229189 {source="ncithesaurus:Sphincter_Pupillae_Muscle"} xref: Wikipedia:Iris_sphincter_muscle is_a: UBERON:0001606 ! muscle of iris is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle is_a: UBERON:0007521 ! smooth muscle sphincter relationship: develops_from UBERON:0002346 {source="ISBN:0781772214"} ! neurectoderm property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png" xsd:anyURI property_value: function_notes "constricts iris" xsd:string property_value: taxon_notes "In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]" xsd:string property_value: taxon_notes "WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure" xsd:string [Term] id: UBERON:0001608 name: dilatator pupillae def: "A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]." [Wikipedia:Iris_dilator_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "dilator muscle of pupil" EXACT [] synonym: "dilator of pupil" EXACT [] synonym: "dilator pupillae" EXACT [] synonym: "dilator pupillae muscle" EXACT [Wikipedia:Iris_dilator_muscle] synonym: "dilator pupillae muscle" RELATED [BTO:0001371] synonym: "iris dilator" RELATED [Wikipedia:Iris_dilator_muscle] synonym: "iris dilator muscle" EXACT [BTO:0001371] synonym: "musculus dilatator pupillae" EXACT OMO:0003011 [FMA:49158, FMA:TA] synonym: "musculus dilatator pupillae" RELATED OMO:0003011 [Wikipedia:Iris_dilator_muscle] synonym: "musculus dilator pupillae" RELATED [BTO:0001371] synonym: "pupil dilator" RELATED [Wikipedia:Iris_dilator_muscle] synonym: "pupil dilator muscle" RELATED [Wikipedia:Iris_dilator_muscle] synonym: "pupillary dilator" RELATED [Wikipedia:Iris_dilator_muscle] synonym: "pupillary dilator muscle" EXACT [Wikipedia:Iris_dilator_muscle] synonym: "pupillary muscle" RELATED [Wikipedia:Iris_dilator_muscle] synonym: "radial muscle" RELATED [Wikipedia:Iris_dilator_muscle] synonym: "radial muscle of iris" EXACT [Wikipedia:Iris_dilator_muscle] synonym: "radiating fibers" RELATED [Wikipedia:Iris_dilator_muscle] xref: BTO:0001371 xref: EMAPA:35286 xref: FMA:49158 xref: MA:0001288 xref: NCIT:C32463 xref: SCTID:280890008 xref: UMLS:C0229190 {source="ncithesaurus:Dilator_Pupillae_Muscle"} xref: Wikipedia:Iris_dilator_muscle is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle relationship: develops_from UBERON:0002346 {source="ISBN:0781772214"} ! neurectoderm relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png" xsd:anyURI property_value: function_notes "It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina" xsd:string [Term] id: UBERON:0001609 name: isthmus of thyroid gland def: "A narrow median bridge that joins together the lower thirds of the two lateral (right and left) lobes of the thyroid gland and usually covers the second and the third tracheal rings; the thyroid isthmus is variable in presence and size, can change shape and size, and can encompass a cranially extending pyramid lobe (lobus pyramidalis or processus pyramidalis), remnant of the thyroglossal duct." [MP:0013163] subset: uberon_slim synonym: "isthmus" BROAD [VHOG:0000739] synonym: "isthmus glandulae thyroideae" EXACT OMO:0003011 [] synonym: "isthmus glandulae thyroideae" RELATED OMO:0003011 [Wikipedia:Thyroid_isthmus] synonym: "thyroid gland isthmus" EXACT [] synonym: "thyroid isthmus" EXACT [] xref: EHDAA2:0002031 xref: EHDAA:5777 xref: EMAPA:18195 xref: FMA:49178 xref: MA:0000727 xref: NCIT:C32887 xref: neuronames:2643 xref: SCTID:245539003 xref: UMLS:C0229583 {source="ncithesaurus:Thyroid_Gland_Isthmus"} xref: VHOG:0000739 xref: Wikipedia:Thyroid_isthmus is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002046 ! thyroid gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png" xsd:anyURI property_value: homology_notes "In mammals and in some reptiles, the thyroid is composed of two lobes connected by an isthmus; in birds and amphibians, the thyroid consists of two isolated lobes. (...) Despite these morphological differences, the ontogeny of the thyroid follows the same pattern in all vertebrates (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000739", ontology="VHOG", source="DOI:10.1210/er.2003-0028 De Felice M, Di Lauro R, Thyroid development and its disorders: genetics and molecular mechanisms. Endocrine Reviews (2004)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001610 name: lingual artery def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria lingualis" RELATED OMO:0003011 [Wikipedia:Lingual_artery] synonym: "lingual branch of external carotid artery" EXACT [] xref: AAO:0010492 xref: EMAPA:36324 xref: FMA:49526 xref: MA:0001992 xref: NCIT:C52961 xref: SCTID:181327002 xref: UMLS:C0226104 {source="ncithesaurus:Lingual_Artery"} xref: Wikipedia:Lingual_artery is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035398 ! branch of external carotid artery relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO"} property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG" xsd:anyURI property_value: external_definition "Part of the external carotid which supplies blood to the tongue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001611 name: sublingual artery def: "A branch of the lingual artery that supplies the sublingual gland." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: uberon_slim synonym: "arteria sublingualis" RELATED OMO:0003011 [Wikipedia:Sublingual_artery] synonym: "sublingual branch of lingual artery" EXACT [] xref: AAO:0010491 xref: EMAPA:37115 {source="MA:th"} xref: FMA:49543 xref: MA:0002049 xref: NCIT:C53002 xref: SCTID:368706006 xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"} xref: Wikipedia:Sublingual_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png" xsd:anyURI property_value: editor_note "Check grouping with amphibian structure of the same name" xsd:string property_value: external_definition "Part of the external carotid which supplies blood to the tip of the snout where branches go to the tongue and the m. geniohyoideus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001612 name: facial artery def: "A branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [Wikipedia:Facial_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria maxillaris externa" RELATED OMO:0003011 [Wikipedia:Facial_artery] synonym: "external maxillary artery" RELATED [] xref: EMAPA:19213 xref: FMA:49549 xref: MA:0001950 xref: NCIT:C32578 xref: SCTID:181328007 xref: UMLS:C0226109 {source="ncithesaurus:Facial_Artery"} xref: Wikipedia:Facial_artery is_a: UBERON:0035398 ! branch of external carotid artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png" xsd:anyURI [Term] id: UBERON:0001613 name: occipital artery def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [Wikipedia:Occipital_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria occipitalis" RELATED OMO:0003011 [Wikipedia:Occipital_artery] xref: EMAPA:37672 {source="MA:th"} xref: FMA:49586 xref: MA:0002009 xref: NCIT:C33194 xref: SCTID:244219005 xref: UMLS:C0226117 {source="ncithesaurus:Occipital_Artery"} xref: Wikipedia:Occipital_artery is_a: UBERON:0035398 ! branch of external carotid artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png" xsd:anyURI [Term] id: UBERON:0001614 name: superficial temporal artery def: "A major artery of the head that arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Superficial_temporal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria temporalis superficialis" RELATED OMO:0003011 [Wikipedia:Superficial_temporal_artery] xref: BTO:0003747 xref: EMAPA:37118 {source="MA:th"} xref: FMA:49650 xref: MA:0002062 xref: SCTID:181325005 xref: Wikipedia:Superficial_temporal_artery is_a: UBERON:0001632 ! temporal artery is_a: UBERON:0035398 ! branch of external carotid artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray1200.png" xsd:anyURI [Term] id: UBERON:0001615 name: transverse facial artery def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [Wikipedia:Transverse_facial_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria transversa faciei" RELATED OMO:0003011 [Wikipedia:Transverse_facial_artery] xref: EMAPA:37130 {source="MA:th"} xref: FMA:49657 xref: MA:0002068 xref: NCIT:C53025 xref: SCTID:146551008 xref: UMLS:C0226132 {source="ncithesaurus:Transverse_Facial_Artery"} xref: Wikipedia:Transverse_facial_artery is_a: UBERON:0013648 ! masseteric artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png" xsd:anyURI [Term] id: UBERON:0001616 name: maxillary artery def: "An artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [Wikipedia:Maxillary_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria maxillaris" RELATED OMO:0003011 [Wikipedia:Maxillary_artery] synonym: "internal maxillary artery" RELATED [] xref: EHDAA2:0001069 xref: EHDAA:7357 xref: EMAPA:17311 xref: FMA:49675 xref: GAID:498 xref: MA:0001919 xref: MESH:D008438 xref: NCIT:C34205 xref: SCTID:181326006 xref: UMLS:C0024949 {source="ncithesaurus:Maxillary_Artery"} xref: Wikipedia:Maxillary_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/39/Gray510.png" xsd:anyURI property_value: development_notes "...1st pair undergoes partial regression, the remnants of which becomes part of the maxillary arteries" xsd:string {source="http://download.videohelp.com/vitualis/med/Vascular_Devt.html"} [Term] id: UBERON:0001617 name: mental artery def: "The mental branch of inferior alveolar artery escapes with the nerve at the mental foramen, supplies the chin, and anastomoses with the submental and inferior labial arteries. [WP,unvetted]." [Wikipedia:Mental_artery] subset: human_reference_atlas subset: uberon_slim synonym: "mental branch of inferior alveolar artery" EXACT [] synonym: "ramus mentalis (arteria alveolaris inferior)" EXACT OMO:0003011 [FMA:49701, FMA:TA] xref: EMAPA:37105 {source="MA:th"} xref: FMA:49701 xref: MA:0002002 xref: NCIT:C52973 xref: SCTID:147561008 xref: UMLS:C0226144 {source="ncithesaurus:Mental_Artery"} xref: Wikipedia:Mental_part_of_inferior_alveolar_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001618 name: buccal artery def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [Wikipedia:Buccal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria buccalis" RELATED OMO:0003011 [Wikipedia:Buccal_artery] synonym: "arteria buccinatoria" RELATED OMO:0003011 [Wikipedia:Buccal_artery] xref: EMAPA:37073 {source="MA:th"} xref: FMA:49754 xref: MA:0001924 xref: NCIT:C52847 xref: SCTID:148066005 xref: UMLS:C0226151 {source="ncithesaurus:Buccal_Artery"} xref: Wikipedia:Buccal_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png" xsd:anyURI [Term] id: UBERON:0001619 name: ophthalmic artery def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic foramen/canal. [WP,modified]." [Wikipedia:Ophthalmic_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria ophthalmica" RELATED OMO:0003011 [Wikipedia:Ophthalmic_artery] synonym: "opthalmic artery" RELATED [Wikipedia:Ophthalmic_artery] xref: AAO:0010497 xref: EHDAA2:0001300 xref: EHDAA:7363 xref: EMAPA:17007 xref: FMA:49868 xref: GAID:503 xref: MA:0002011 xref: MESH:D009880 xref: NCIT:C33216 xref: SCTID:181310005 xref: UMLS:C0029078 {source="ncithesaurus:Opthalmic_Artery"} xref: Wikipedia:Ophthalmic_artery xref: XAO:0000368 is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of internal carotid (AAO:0010219)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "Part of internal carotid which carries blood via branches to the eye, the eye muscles, and eyelids.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001620 name: central retinal artery def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria centralis retinae" RELATED OMO:0003011 [Wikipedia:Central_retinal_artery] synonym: "central artery of retina" EXACT [] synonym: "central artery of the retina" RELATED [Wikipedia:Central_retinal_artery] synonym: "retinal artery" EXACT [] synonym: "Zinn's artery" EXACT [] xref: EMAPA:37113 {source="MA:th"} xref: FMA:49879 xref: GAID:508 xref: MA:0002038 xref: MESH:D012161 xref: NCIT:C52997 xref: SCTID:277771001 xref: UMLS:C0035301 {source="ncithesaurus:Retinal_Artery"} xref: Wikipedia:Central_retinal_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003501 ! retina blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png" xsd:anyURI [Term] id: UBERON:0001621 name: coronary artery def: "An artery that supplies the myocardium." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Coronary_circulation#Coronary_anatomy] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "coronary arterial tree" EXACT [] synonym: "coronary vessel" RELATED [ZFA:0005812] xref: BTO:0000290 xref: CALOHA:TS-0176 xref: EFO:0002551 xref: EMAPA:19160 xref: EV:0100383 xref: FMA:49893 xref: galen:CoronaryArtery xref: MA:0002453 xref: NCIT:C12843 xref: SCTID:181294004 xref: UMLS:C0205042 {source="ncithesaurus:Coronary_Artery"} xref: VHOG:0001557 xref: Wikipedia:Coronary_circulation#Coronary_anatomy xref: ZFA:0005812 is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0004573 ! systemic artery property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png" xsd:anyURI [Term] id: UBERON:0001622 name: lacrimal artery def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [Wikipedia:Lacrimal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "a. lacrimalis" RELATED OMO:0003011 [Wikipedia:Lacrimal_artery] xref: EMAPA:37094 {source="MA:th"} xref: FMA:49927 xref: MA:0001988 xref: NCIT:C52948 xref: SCTID:369324002 xref: UMLS:C0226171 {source="ncithesaurus:Lacrimal_Artery"} xref: Wikipedia:Lacrimal_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png" xsd:anyURI [Term] id: UBERON:0001623 name: dorsal nasal artery def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [Wikipedia:Dorsal_nasal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria dorsalis nasi" RELATED OMO:0003011 [Wikipedia:Dorsal_nasal_artery] synonym: "dorsal nasal branch of ophthalmic artery" EXACT [FMA:50000] synonym: "external nasal artery" EXACT [FMA:50000] xref: EMAPA:35292 xref: FMA:50000 xref: MA:0001945 xref: NCIT:C52983 xref: SCTID:369333000 xref: UMLS:C0226194 {source="ncithesaurus:Dorsal_Nasal_Artery"} xref: Wikipedia:Dorsal_nasal_artery is_a: UBERON:0015156 {source="FMA"} ! terminal branch of ophthalmic artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png" xsd:anyURI [Term] id: UBERON:0001624 name: anterior cerebral artery def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [Wikipedia:Anterior_cerebral_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria cerebri anterior" RELATED OMO:0003011 [Wikipedia:Anterior_cerebral_artery] xref: EHDAA2:0000128 xref: EHDAA:5296 xref: EMAPA:17854 xref: FMA:50028 xref: GAID:485 xref: MA:0001915 xref: MESH:D020771 xref: NCIT:C12829 xref: SCTID:181309000 xref: UMLS:C0149561 {source="ncithesaurus:Anterior_Cerebral_Artery"} xref: Wikipedia:Anterior_cerebral_artery is_a: UBERON:0004449 ! cerebral artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg" xsd:anyURI [Term] id: UBERON:0001625 name: right coronary artery def: "Coronary artery which runs along the right side of the heart and predominantly supplies the mycocardium of the right side of the heart[Wikipedia,modified]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Right_coronary_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria coronaria dextra" RELATED OMO:0003011 [Wikipedia:Right_coronary_artery] synonym: "right coronary arterial tree" RELATED [] xref: EHDAA2:0004505 xref: EMAPA:36532 xref: FMA:50039 xref: MA:0002455 xref: NCIT:C12875 xref: SCTID:362037006 xref: UMLS:C1261316 {source="ncithesaurus:Right_Coronary_Artery"} xref: Wikipedia:Right_coronary_artery is_a: UBERON:0001621 ! coronary artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001626 name: left coronary artery def: "Coronary artery which runs along the left side of the heart and predominantly supplies the mycocardium of the left side of the heart[Wikipedia,modified]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Left_coronary_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria coronaria sinistra" RELATED OMO:0003011 [Wikipedia:Left_coronary_artery] synonym: "left coronary arterial tree" RELATED [] xref: EHDAA2:0004504 xref: EMAPA:36531 xref: FMA:50040 xref: MA:0002454 xref: NCIT:C12872 xref: SCTID:362034004 xref: UMLS:C1261082 {source="ncithesaurus:Left_Coronary_Artery"} xref: Wikipedia:Left_coronary_artery is_a: UBERON:0001621 ! coronary artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001627 name: middle cerebral artery def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [Wikipedia:Middle_cerebral_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria cerebri media" RELATED OMO:0003011 [Wikipedia:Middle_cerebral_artery] synonym: "Sylvian artery" EXACT [] xref: BTO:0005206 xref: EHDAA2:0001179 xref: EHDAA:5298 xref: EMAPA:18239 xref: FMA:50079 xref: GAID:487 xref: MA:0001935 xref: MESH:D020768 xref: NCIT:C12830 xref: SCTID:181312002 xref: UMLS:C0149566 {source="ncithesaurus:Middle_Cerebral_Artery"} xref: Wikipedia:Middle_cerebral_artery is_a: UBERON:0004449 ! cerebral artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg" xsd:anyURI [Term] id: UBERON:0001628 name: posterior communicating artery def: "One of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery." [Wikipedia:Posterior_communicating_artery] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "arteria cerebri communicans posterior" RELATED OMO:0003011 [Wikipedia:Posterior_communicating_artery] synonym: "caudal communicating segment" EXACT [ZFA:0005001] synonym: "PCA" RELATED [] synonym: "PCS" RELATED [] synonym: "posterior communicating segment of the basilar artery" EXACT [ZFA:0005001] xref: EHDAA2:0004518 xref: EHDAA:3352 xref: EMAPA:18600 xref: FMA:50084 xref: MA:0002023 xref: NCIT:C33357 xref: RETIRED_EHDAA2:0001487 xref: SCTID:181314001 xref: TAO:0005001 xref: UMLS:C0149559 {source="ncithesaurus:Posterior_Communicating_Artery"} xref: Wikipedia:Posterior_communicating_artery xref: ZFA:0005001 is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0006347 ! communicating artery is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0003709 ! circle of Willis relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg" xsd:anyURI property_value: external_definition "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005001", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "todo - verify ZFA link: An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery" xsd:string [Term] id: UBERON:0001629 name: carotid body def: "A small epithelioid structure consisting of a small cluster of chemoreceptive and supporting cells located near the bifurcation of the common carotid artery that serves as a chemoreceptive organ that senses the pH, carbon dioxide, and oxygen concentrations in the blood and plays a crucial role in their homeostatic control." [MP:0003438] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "carotid glomus" EXACT [Wikipedia:Carotid_body] synonym: "glomus caroticum" EXACT OMO:0003011 [Wikipedia:Carotid_body] xref: BTO:0000204 xref: EMAPA:19211 xref: FMA:50095 xref: GAID:813 xref: MA:0002463 xref: MESH:D002344 xref: NCIT:C66852 xref: SCTID:362586000 xref: UMLS:C0007277 {source="ncithesaurus:Carotid_Body"} xref: Wikipedia:Carotid_body is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: part_of UBERON:0001530 ! common carotid artery plus branches property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray1186.png" xsd:anyURI [Term] id: UBERON:0001630 name: muscle organ def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]." [GO:0007517] subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "muscle" BROAD [ZFA:0005145] xref: EMAPA:37474 {source="MA:th"} xref: EV:0100146 xref: FMA:5022 xref: GAID:131 xref: galen:Muscle xref: MA:0000015 xref: SCTID:71616004 xref: TAO:0005145 xref: VHOG:0001245 xref: XAO:0000172 xref: ZFA:0005145 is_a: UBERON:0000062 ! organ is_a: UBERON:0005090 ! muscle structure relationship: part_of UBERON:0001015 ! musculature property_value: external_definition "Portion of tissue composed of contractile fibers.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005145", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "muscular" xsd:string property_value: homology_notes "It seems clear that the metazoan ancestor inherited from its unicellular descendants an actin cytoskeleton and motor-proteins of the myosin superfamily. Within metazoans, these two molecules were arranged into effective contractile units, the muscles. The basic trends for muscle evolution are already expressed in the diploblastic taxa.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001245", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.75", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001631 name: thoracic duct def: "A major lymphatic vessel that drains lymph from the lower body, left appendage, and left thorax into the junction of the left jugular and subclavian veins." [Wikipedia:Thoracic_duct] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ductus thoracicus" RELATED OMO:0003011 [Wikipedia:Thoracic_duct] synonym: "trunk of thoracic duct tree" EXACT [] xref: EHDAA2:0004501 xref: EMAPA:19310 xref: FMA:5031 xref: GAID:1290 xref: MA:0002801 xref: MESH:D013897 xref: NCIT:C33768 xref: SCTID:362600004 xref: TAO:0005110 xref: UMLS:C0039979 {source="ncithesaurus:Thoracic_Duct"} xref: Wikipedia:Thoracic_duct xref: ZFA:0005110 is_a: UBERON:0001473 ! lymphatic vessel relationship: develops_from UBERON:0002065 {source="TAO"} ! posterior cardinal vein relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png" xsd:anyURI property_value: editor_note "placement of the ZFA class here is dubious" xsd:string property_value: external_definition "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein." xsd:string {source="FMA:5031"} property_value: external_definition "The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein." xsd:string {source="ZFA:0005110"} [Term] id: UBERON:0001632 name: temporal artery subset: grouping_class subset: uberon_slim xref: EMAPA:37127 {source="MA:th"} xref: FMA:50438 xref: GAID:489 xref: MA:0002061 xref: MESH:D013699 xref: NCIT:C33741 xref: UMLS:C0039482 {source="ncithesaurus:Temporal_Artery"} xref: Wikipedia:Temporal_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray1200.png" xsd:anyURI property_value: editor_note "This class currently groups a variety of different structures" xsd:string [Term] id: UBERON:0001633 name: basilar artery def: "A major artery that supplues the hindbrain and runs along the ventral keel of the hindbrain." [https://orcid.org/0000-0003-3308-6245] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: unverified_taxonomic_grouping subset: vertebrate_core synonym: "BA" RELATED [] xref: EHDAA2:0000163 xref: EHDAA:5285 xref: EMAPA:17307 xref: FMA:50542 xref: GAID:474 xref: MA:0001920 xref: MESH:D001488 xref: NCIT:C12676 xref: SCTID:244215004 xref: TAO:0005002 xref: UMLS:C0004811 {source="ncithesaurus:Basilar_Artery"} xref: VHOG:0000237 xref: Wikipedia:Basilar_artery xref: ZFA:0005002 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0035307 ! branch of vertebral artery relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery relationship: part_of UBERON:0001533 ! subclavian artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg" xsd:anyURI property_value: external_definition "Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries." xsd:string {source="ZFA:0005002"} property_value: external_definition "The unpaired artery that is formed by the union of the two vertebral arteries, runs forward within the skull just under the pons, divides into the two posterior cerebral arteries, and supplies the pons, cerebellum, posterior part of the cerebrum, and the inner ear[MP]." xsd:string {source="MP:0013186"} property_value: homology_notes "The major artery supplying the hindbrain, the basilar artery, runs along the ventral keel of the hindbrain in all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000237", ontology="VHOG", source="DOI:10.1242/dev.058776 Fujita M, Cha YR, Pham VN, Sakurai A, Roman BL, Gutkind JS, Weinstein BM, Assembly and patterning of the vascular network of the vertebrate hindbrain. Development (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001634 name: mesencephalic artery def: "The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein." [PMID:12606281, XAO:0004173] subset: human_reference_atlas synonym: "MsA" EXACT OMO:0003000 [ZFA:0001068] xref: FMA:50570 xref: TAO:0001068 xref: XAO:0004173 xref: ZFA:0001068 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:2001062 {source="ZFA"} ! presumptive mesencephalic artery relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: develops_from primitive mesencephalic artery (TAO:0001062)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001068", ontology="TAO"} property_value: editor_note "review this term, check taxon scope" xsd:string property_value: external_definition "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001068", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Develops from the proximal portion of the primitive mesencephalic artery[ZFA:0001068, ZFIN:ZDB-PUB-010205-5]." xsd:string {source="ZFA:0001068, ZFIN:ZDB-PUB-010205-5"} [Term] id: UBERON:0001635 name: superior cerebellar artery def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria superior cerebelli" RELATED OMO:0003011 [Wikipedia:Superior_cerebellar_artery] xref: EHDAA2:0000681 xref: EMAPA:19309 xref: FMA:50573 xref: MA:0001934 xref: NCIT:C33669 xref: SCTID:244214000 xref: UMLS:C0149575 {source="ncithesaurus:Superior_Cerebellar_Artery"} xref: Wikipedia:Superior_cerebellar_artery is_a: UBERON:0003472 ! cerebellar artery is_a: UBERON:0035489 ! branch of basilar artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg" xsd:anyURI [Term] id: UBERON:0001636 name: posterior cerebral artery def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [Wikipedia:Posterior_cerebral_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria cerebri posterior" RELATED OMO:0003011 [Wikipedia:Posterior_cerebral_artery] xref: EHDAA2:0000659 xref: EMAPA:17861 xref: FMA:50583 xref: GAID:488 xref: MA:0002022 xref: MESH:D020769 xref: NCIT:C12831 xref: SCTID:181313007 xref: UMLS:C0149576 {source="ncithesaurus:Posterior_Cerebral_Artery"} xref: Wikipedia:Posterior_cerebral_artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035489 ! branch of basilar artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg" xsd:anyURI [Term] id: UBERON:0001637 name: artery def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arterial subtree" EXACT [] synonym: "arterial system" RELATED [] synonym: "arterial tree organ part" EXACT [] synonym: "arterial vessel" RELATED [] synonym: "arteries" EXACT OMO:0003004 [TAO:0000005] xref: AAO:0010211 xref: AEO:0000208 xref: BTO:0000573 xref: CALOHA:TS-0054 xref: EFO:0000814 xref: EHDAA2:0003253 xref: EMAPA:35147 xref: EV:0100026 xref: FMA:50720 xref: GAID:468 xref: galen:Artery xref: MA:0000064 xref: MAT:0000034 xref: MESH:D001158 xref: MIAA:0000034 xref: NCIT:C12372 xref: SCTID:362877004 xref: TAO:0000005 xref: UMLS:C0003842 {source="ncithesaurus:Artery"} xref: VHOG:0001251 xref: Wikipedia:Artery xref: XAO:0000114 xref: ZFA:0000005 is_a: UBERON:0003509 ! arterial blood vessel relationship: fma_set_term FMA:63812 property_value: editor_note "Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme." xsd:string property_value: external_definition "Part of the circulatory system composed of blood vessels which carry oxygenated blood away from the heart to the rest of the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010211", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "Some arthropods have primitive arterial systems but this term refers to arteries in a true closed circulatory system." xsd:string property_value: has_relational_adjective "arterial" xsd:string property_value: homology_notes "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001251", ontology="VHOG", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001638 name: vein def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "vascular element" RELATED [EMAPA:th] synonym: "vena" RELATED OMO:0003011 [Wikipedia:Vein] synonym: "venae" RELATED OMO:0003004 [VHOG:0001743] synonym: "venous subtree" BROAD [] synonym: "venous tree organ part" EXACT [] synonym: "venous vessel" BROAD [] xref: AAO:0010212 xref: AEO:0000209 xref: BTO:0000234 xref: CALOHA:TS-1108 xref: EFO:0000816 xref: EHDAA2:0003254 xref: EMAPA:35906 xref: EV:0100031 xref: FMA:50723 xref: GAID:492 xref: galen:Vein xref: MA:0000067 xref: MAT:0000037 xref: MESH:D014680 xref: MIAA:0000037 xref: NCIT:C12814 xref: SCTID:181367001 xref: TAO:0000082 xref: UMLS:C0042449 {source="ncithesaurus:Vein"} xref: VHOG:0001743 xref: Wikipedia:Vein xref: XAO:0000115 xref: ZFA:0000082 is_a: UBERON:0003920 ! venous blood vessel relationship: fma_set_term FMA:63814 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg" xsd:anyURI property_value: editor_note "TODO - check with MA - vein vs venous blood vessel" xsd:string property_value: external_definition "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010212", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "venous" xsd:string property_value: homology_notes "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001743", ontology="VHOG", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001639 name: hepatic portal vein def: "A portal vein that transports nutrients from the digestive tract to the liver[Kardong]." [http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376, ISBN:0073040584, Wikipedia:Hepatic_portal_vein] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hepatic portal tree" EXACT [] synonym: "HPV" RELATED [] synonym: "liver portal vein" EXACT [OBOL:automatic] synonym: "portal vein" RELATED INCONSISTENT [] synonym: "portal vein of liver" EXACT [OBOL:automatic] synonym: "primary hepatic portal vein" RELATED [ZFA:0005090] synonym: "primary hepatic portal veins" RELATED [] synonym: "vena portae hepatis" RELATED OMO:0003011 [Wikipedia:Hepatic_portal_vein] xref: AAO:0010214 xref: FMA:50735 xref: MA:0002132 xref: TAO:0005090 xref: VHOG:0000642 xref: Wikipedia:Hepatic_portal_vein xref: ZFA:0005090 is_a: UBERON:0002017 {source="MA"} ! portal vein relationship: part_of UBERON:0010194 ! hepatic portal system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: homology_notes "Adults of all vertebrates lose the vitelline veins and establish a single large hepatic portal vein (...) by the selective retention of parts of the left and right subintestinals and of several anastomoses that occur between them within and just posterior to the liver.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000642", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.265", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]" xsd:string [Term] id: UBERON:0001640 name: celiac artery def: "The first major branch of the abdominal aorta." [Wikipedia:Celiac_artery] comment: dorsal aorta in Kardong subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "arteria coeliaca" RELATED OMO:0003011 [Wikipedia:Celiac_artery] synonym: "arteria cÅliaca" RELATED OMO:0003011 [Wikipedia:Celiac_artery] synonym: "celiac tree" EXACT [] synonym: "celiac trunk" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac artery" EXACT [Wikipedia:Celiac_artery] synonym: "coeliac axis" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunck" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunk" RELATED [Wikipedia:Celiac_artery] synonym: "truncus coeliacus" RELATED OMO:0003011 [Wikipedia:Celiac_artery] synonym: "truncus cÅliacus" RELATED OMO:0003011 [Wikipedia:Celiac_artery] xref: EHDAA2:0004519 xref: EMAPA:35202 xref: FMA:50737 xref: GAID:483 xref: MA:0001931 xref: MESH:D002445 xref: NCIT:C52846 xref: SCTID:181340007 xref: UMLS:C0007569 {source="ncithesaurus:Coeliac_Artery"} xref: Wikipedia:Celiac_artery is_a: UBERON:0012254 ! abdominal aorta artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI [Term] id: UBERON:0001641 name: transverse sinus def: "One of the dural venous sinuses and drains the superior sagittal sinus the occipital sinus and the straight sinus, and empties into the sigmoid sinus which in turn reaches the jugular bulb." [http://radiopaedia.org/articles/transverse-sinus] subset: human_reference_atlas subset: uberon_slim synonym: "groove for right and left transverse sinuses" RELATED [Wikipedia:Transverse_sinuses] synonym: "lateral sinus" RELATED [FMA:50763] synonym: "sinus transversus" RELATED [Wikipedia:Transverse_sinuses] synonym: "sinus transversus durae matris" EXACT OMO:0003011 [Wikipedia:Transverse_sinuses] synonym: "transverse sinus" RELATED [Wikipedia:Transverse_sinuses] synonym: "transverse sinus vein" RELATED [Wikipedia:Transverse_sinuses] xref: EMAPA:18637 xref: FMA:50763 xref: MA:0001868 xref: ncithesaurus:Transverse_Sinus xref: SCTID:279262004 xref: Wikipedia:Transverse_sinuses is_a: UBERON:0017635 ! paired venous dural sinus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI property_value: editor_note "TODO - check subclasses" xsd:string [Term] id: UBERON:0001642 name: superior sagittal sinus def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [Wikipedia:Superior_sagittal_sinus] subset: human_reference_atlas subset: uberon_slim synonym: "sinus sagittalis superior" RELATED OMO:0003011 [Wikipedia:Superior_sagittal_sinus] xref: EMAPA:18636 xref: FMA:50767 xref: MA:0001867 xref: MESH:D054063 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12515 xref: SCTID:362075006 xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"} xref: Wikipedia:Superior_sagittal_sinus is_a: UBERON:0015704 ! sagittal sinus relationship: develops_from UBERON:0009968 {source="cjm"} ! primitive superior sagittal sinus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI [Term] id: UBERON:0001643 name: oculomotor nerve def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "3n" BROAD OMO:0003000 [BIRNLEX:1646, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-III" RELATED [] synonym: "cranial nerve III" RELATED [] synonym: "nerve III" RELATED [NeuroNames:488] synonym: "nervus oculomotorius" EXACT OMO:0003011 [Wikipedia:Oculomotor_nerve] synonym: "nervus oculomotorius [III]" EXACT OMO:0003011 [FMA:50864, FMA:TA] synonym: "occulomotor" RELATED [] synonym: "oculomotor III" EXACT [EHDAA2:0001284] synonym: "oculomotor III nerve" EXACT [] synonym: "oculomotor nerve [III]" EXACT [] synonym: "oculomotor nerve or its root" RELATED [BAMS:3n] synonym: "oculomotor nerve tree" EXACT [] synonym: "third cranial nerve" EXACT [] xref: AAO:0010468 xref: BAMS:3n xref: BAMS:IIIn xref: BIRNLEX:1646 xref: BM:MB-IIIN xref: EHDAA2:0001284 xref: EHDAA:3736 xref: EMAPA:17574 xref: FMA:50864 xref: GAID:829 xref: HBA:9316 xref: MA:0001095 xref: MBA:832 xref: MESH:D009802 xref: NCIT:C12758 xref: neuronames:488 {source="BIRNLEX:1646"} xref: SCTID:362456009 xref: TAO:0000405 xref: UMLS:C0028864 {source="BIRNLEX:1646", source="ncithesaurus:Oculomotor_Nerve"} xref: VHOG:0000692 xref: Wikipedia:Oculomotor_nerve xref: XAO:0003090 xref: ZFA:0000405 is_a: UBERON:0001785 ! cranial nerve relationship: develops_from UBERON:0010285 {source="Wikipedia"} ! midbrain basal plate relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png" xsd:anyURI property_value: external_definition "Somatic efferent fibers which innervate four eye muscles.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010468", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000692", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001644 name: trochlear nerve def: "A cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "4n" BROAD OMO:0003000 [BIRNLEX:1654, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-IV" RELATED [] synonym: "cranial nerve IV" EXACT [VHOG:0000705, ZFA:0000600] synonym: "fourth cranial nerve" EXACT [] synonym: "nerve IV" RELATED [NeuroNames:466] synonym: "nervus trochlearis" RELATED OMO:0003011 [Wikipedia:Trochlear_nerve] synonym: "nervus trochlearis [IV]" EXACT OMO:0003011 [FMA:50865, FMA:TA] synonym: "pathetic nerve" RELATED [VHOG:0000705] synonym: "superior oblique nerve" EXACT [] synonym: "trochlear" RELATED [VHOG:0000705] synonym: "trochlear IV nerve" EXACT [MA:0001105] synonym: "trochlear nerve [IV]" EXACT [] synonym: "trochlear nerve or its root" RELATED [BAMS:4n] synonym: "trochlear nerve tree" EXACT [] synonym: "trochlear nerve/root" RELATED [BAMS:4n] xref: AAO:0010469 xref: BAMS:4n xref: BAMS:IVn xref: BAMS:nIV xref: BIRNLEX:1654 xref: BM:IVN xref: EHDAA2:0002090 xref: EMAPA:18218 xref: FMA:50865 xref: GAID:838 xref: HBA:9319 xref: MA:0001105 xref: MBA:911 xref: MESH:D014321 xref: NCIT:C12808 xref: neuronames:466 {source="BIRNLEX:1654"} xref: SCTID:180939009 xref: TAO:0000600 xref: UMLS:C0041159 {source="BIRNLEX:1654", source="ncithesaurus:Trochlear_Nerve"} xref: VHOG:0000705 xref: Wikipedia:Trochlear_nerve xref: XAO:0003091 xref: ZFA:0000600 is_a: UBERON:0001785 ! cranial nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/33/Trochlear_nerve.png" xsd:anyURI property_value: development_notes "The human trochlear nerve is derived from the basal plate of the embryonic midbrain." xsd:string property_value: external_definition "Somatic efferent nerve which supplies a single eye muscle, the m. obliquus superior.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010469", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000705", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: taxon_notes "Homologous trochlear nerves are found in all jawed vertebrates" xsd:string [Term] id: UBERON:0001645 name: trigeminal nerve def: "Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "5n" BROAD OMO:0003000 [BIRNLEX:869, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-V" RELATED [] synonym: "cranial nerve V" RELATED [] synonym: "fifth cranial nerve" EXACT [] synonym: "nerve V" RELATED [NeuroNames:549] synonym: "nervus trigeminus" EXACT OMO:0003011 [Wikipedia:Trigeminal_nerve] synonym: "nervus trigeminus" RELATED [BTO:0001072] synonym: "nervus trigeminus [v]" EXACT OMO:0003011 [FMA:50866, FMA:TA] synonym: "trigeminal nerve [V]" EXACT [] synonym: "trigeminal nerve tree" EXACT [] synonym: "trigeminal V" EXACT [EHDAA2:0002084] synonym: "trigeminal v nerve" EXACT [] synonym: "trigeminus" RELATED [BTO:0001072] xref: AAO:0010470 xref: BAMS:5n xref: BAMS:nV xref: BAMS:Vn xref: BIRNLEX:869 xref: BM:VN xref: BTO:0001072 xref: EFO:0001402 xref: EHDAA2:0002084 xref: EHDAA:3738 xref: EMAPA:17576 xref: FMA:50866 xref: GAID:726 xref: MA:0001100 xref: MBA:901 xref: MESH:D014276 xref: MFMO:0000093 xref: NCIT:C12806 xref: neuronames:549 {source="BIRNLEX:869"} xref: SCTID:362459002 xref: TAO:0000697 xref: UMLS:C0040996 {source="ncithesaurus:Trigeminal_Nerve", source="BIRNLEX:869"} xref: VHOG:0000704 xref: Wikipedia:Trigeminal_nerve xref: XAO:0003092 xref: ZFA:0000697 is_a: UBERON:0001785 ! cranial nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png" xsd:anyURI property_value: external_definition "Nerve consists of motor and sensory components. Ganglion cells of the sensory component form the proximal part of the trigeminal (Gasserian) ganglion. From the ganglion 3 major rami innervate jaws, snout, and buccal roof.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010470", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000704", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: taxon_notes "the ophthalmic usually usually merges with the other two. In some vertebrates, the ophthalmic emerges from the brain separately[Kardong] The trigeminal nerve has 3 branches in mammals - similar branches are present in nonmammalian vertebrates, but in some a separate profundus nerve that corresponds to opthalmic branch in mammls" xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0001646 name: abducens nerve def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "6n" BROAD OMO:0003000 [BIRNLEX:876, NIFSTD:NeuroNames_abbrevSource] synonym: "abducens nerve [VI]" EXACT [] synonym: "abducens nerve tree" EXACT [] synonym: "abducens nerve/root" RELATED [BAMS:6n] synonym: "abducens VI nerve" EXACT [] synonym: "abducent nerve" RELATED [] synonym: "abducent nerve [VI]" EXACT [] synonym: "abducents VI nerve" RELATED [EMAPA:18216] synonym: "CN-VI" RELATED [] synonym: "cranial nerve VI" RELATED [] synonym: "lateral rectus nerve" EXACT [] synonym: "nerve VI" RELATED [NeuroNames:550] synonym: "nervus abducens" EXACT [] synonym: "nervus abducens" RELATED OMO:0003011 [Wikipedia:Abducens_nerve] synonym: "nervus abducens [VI]" EXACT OMO:0003011 [FMA:50867, FMA:TA] synonym: "sixth cranial nerve" EXACT [] xref: AAO:0010471 xref: BAMS:VIn xref: BIRNLEX:876 xref: BM:Pons-VIN xref: EHDAA2:0000103 xref: EMAPA:18216 xref: FMA:50867 xref: GAID:824 xref: HBA:9325 xref: MA:0001087 xref: MBA:710 xref: MESH:D000010 xref: NCIT:C12665 xref: neuronames:550 {source="BIRNLEX:876"} xref: SCTID:180941005 xref: TAO:0000310 xref: UMLS:C0000741 {source="ncithesaurus:Abducens_Nerve", source="BIRNLEX:876"} xref: VHOG:0000697 xref: Wikipedia:Abducens_nerve xref: XAO:0003093 xref: ZFA:0000310 is_a: UBERON:0001785 ! cranial nerve relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png" xsd:anyURI property_value: external_definition "Somatic motor nerve which bifurcates innervating m. rectus lateralis and m. retractor bulbi (eye muscles).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010471", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000697", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: taxon_notes "Homologous abducens nerves are found in all vertebrates except lampreys and hagfishes.[WP] It controls the movement of a single muscle, the lateral rectus muscle of the eye, in humans. In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection" xsd:string {source="WP"} [Term] id: UBERON:0001647 name: facial nerve def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "7n" BROAD OMO:0003000 [BIRNLEX:827, NIFSTD:NeuroNames_abbrevSource] synonym: "branchiomeric cranial nerve" EXACT [] synonym: "CN-VII" RELATED [] synonym: "cranial nerve VII" RELATED [] synonym: "face nerve" EXACT [OBOL:automatic] synonym: "facial nerve [VII]" EXACT [] synonym: "facial nerve or its root" RELATED [BAMS:7n] synonym: "facial nerve tree" EXACT [] synonym: "facial nerve/root" RELATED [BAMS:7n] synonym: "facial VII" EXACT [EHDAA2:0000489] synonym: "facial VII nerve" EXACT [] synonym: "nerve of face" EXACT [OBOL:automatic] synonym: "nerve VII" RELATED [NeuroNames:551] synonym: "nervus facialis" EXACT [ZFA:0000664] synonym: "nervus facialis" RELATED OMO:0003011 [Wikipedia:Facial_nerve] synonym: "nervus facialis [vii]" EXACT OMO:0003011 [FMA:50868, FMA:TA] synonym: "seventh cranial nerve" EXACT [] xref: AAO:0010472 xref: BAMS:7n xref: BAMS:nVII xref: BAMS:VIIn xref: BAMS:Viin xref: BIRNLEX:827 xref: BM:Pons-VIIN xref: EHDAA2:0000489 xref: EHDAA:3729 xref: EMAPA:17796 xref: FMA:50868 xref: GAID:719 xref: HBA:9328 xref: MA:0001091 xref: MBA:798 xref: MESH:D005154 xref: NCIT:C12714 xref: neuronames:551 {source="BIRNLEX:827"} xref: SCTID:362460007 xref: TAO:0000664 xref: UMLS:C0015462 {source="ncithesaurus:Facial_Nerve", source="BIRNLEX:827"} xref: VHOG:0000706 xref: Wikipedia:Facial_nerve xref: XAO:0003094 xref: ZFA:0000664 is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001033 {source="ZFA"} ! gustatory system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg" xsd:anyURI property_value: external_definition "Slender nerve composed of branchiomotor and visceral efferent fibers innervating the mouth and various muscles within the jaw. Sensory components innervate the bucccal roof and somatomotor components innervate the depressor musculature and muscle interhyoideus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010472", ontology="AAO", source="AAO:DSM"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000706", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001648 name: vestibulocochlear nerve def: "Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "8n" BROAD OMO:0003000 [BIRNLEX:890, NIFSTD:NeuroNames_abbrevSource] synonym: "acoustic nerve" EXACT [FMA:50869] synonym: "acoustic nerve (Crosby)" EXACT [] synonym: "acoustic VIII nerve" EXACT [] synonym: "CN-VIII" EXACT [] synonym: "cochlear-vestibular nerve" EXACT [] synonym: "cochleovestibular nerve" EXACT [] synonym: "cranial nerve VIII" EXACT [] synonym: "eighth cranial nerve" EXACT [] synonym: "nervus octavus" RELATED OMO:0003011 [NeuroNames:553] synonym: "nervus statoacusticus" RELATED OMO:0003011 [NeuroNames:553] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "nervus vestibulocochlearis [viii]" EXACT OMO:0003011 [FMA:50869, FMA:TA] synonym: "octaval nerve" RELATED [] synonym: "stato-acoustic nerve" EXACT [] synonym: "statoacoustic nerve" RELATED [] synonym: "vestibulocochlear nerve [VIII]" EXACT [] synonym: "vestibulocochlear nerve tree" EXACT [] synonym: "vestibulocochlear VIII nerve" EXACT [] synonym: "VIII nerve" EXACT [] synonym: "VIIIth cranial nerve" EXACT [] xref: AAO:0010473 xref: BAMS:8n xref: BAMS:nVIII xref: BAMS:VIIIn xref: BIRNLEX:890 xref: BTO:0003490 xref: EHDAA2:0002194 xref: EMAPA:17801 xref: FMA:50869 xref: GAID:839 xref: HBA:9331 xref: MA:0001109 xref: MBA:933 xref: MESH:D000159 xref: NCIT:C12996 xref: neuronames:553 {source="BIRNLEX:890"} xref: SCTID:180945001 xref: TAO:0000247 xref: UMLS:C0001162 {source="BIRNLEX:890", source="ncithesaurus:Vestibulocochlear_Nerve"} xref: UMLS:C1278835 {source="BIRNLEX:890"} xref: VHOG:0000695 xref: Wikipedia:Vestibulocochlear_nerve xref: XAO:0003095 xref: ZFA:0000247 is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003069 {source="ISBN:0471888893"} ! otic placode relationship: part_of UBERON:0002105 ! vestibulo-auditory system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png" xsd:anyURI property_value: external_definition "Nerve primarily composed of special somatic afferent fibers innervating the inner ear, and is involved in balance, position, and hearing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010473", ontology="AAO", source="AAO:DSM"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000695", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001649 name: glossopharyngeal nerve def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "9n" BROAD OMO:0003000 [BIRNLEX:899, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-IX" RELATED OMO:0003000 [] synonym: "cranial nerve IX" RELATED [] synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709] synonym: "glossopharyngeal IX nerve" EXACT [] synonym: "glossopharyngeal nerve [IX]" EXACT [] synonym: "glossopharyngeal nerve tree" EXACT [] synonym: "nerve IX" RELATED [NeuroNames:701] synonym: "nervus glossopharyngeus" EXACT [ZFA:0000668] synonym: "nervus glossopharyngeus" RELATED OMO:0003011 [Wikipedia:Glossopharyngeal_nerve] synonym: "nervus glossopharyngeus [ix]" EXACT OMO:0003011 [FMA:50870, FMA:TA] synonym: "ninth cranial nerve" EXACT [] xref: AAO:0010474 xref: BAMS:9n xref: BAMS:IXn xref: BIRNLEX:899 xref: BTO:0004979 xref: EHDAA2:0000709 xref: EHDAA:3733 xref: EMAPA:17268 xref: FMA:50870 xref: GAID:827 xref: MA:0001093 xref: MBA:808 xref: MESH:D005930 xref: NCIT:C12723 xref: neuronames:701 {source="BIRNLEX:899"} xref: SCTID:362465002 xref: TAO:0000668 xref: UMLS:C0017679 {source="BIRNLEX:899", source="ncithesaurus:Glossopharyngeal_Nerve"} xref: UMLS:C1305752 {source="BIRNLEX:899"} xref: VHOG:0000701 xref: Wikipedia:Glossopharyngeal_nerve xref: XAO:0003096 xref: ZFA:0000668 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001033 ! gustatory system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: external_definition "Small nerve consisting of branchiomotor and visceral efferent and afferent fibers which innervate the m. subarculais rectus I, dorsal buccal mucosa, and the tongue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010474", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000701", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001650 name: hypoglossal nerve def: "Cranial nerve that innervates the muscles of the tongue." [http://orcid.org/0000-0002-6601-2165, ISBN:080184780X, VHOG:0000693] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "12n" BROAD OMO:0003000 [BIRNLEX:820, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-XII" RELATED [VHOG:0000693] synonym: "cranial nerve XII" EXACT [BIRNLEX:820] synonym: "hypoglossal nerve [XII]" EXACT [] synonym: "hypoglossal nerve tree" EXACT [] synonym: "hypoglossal nerve/ root" RELATED [BAMS:12n] synonym: "hypoglossal XII" EXACT [EHDAA2:0000798] synonym: "hypoglossal XII nerve" EXACT [] synonym: "nerve XII" RELATED [NeuroNames:704] synonym: "nervi hypoglossalis" RELATED OMO:0003011 [NeuroNames:704] synonym: "nervus hypoglossus" RELATED OMO:0003011 [Wikipedia:Hypoglossal_nerve] synonym: "nervus hypoglossus [xii]" EXACT OMO:0003011 [FMA:50871, FMA:TA] synonym: "twelfth cranial nerve" EXACT [] xref: AAO:0010477 xref: BAMS:12n xref: BAMS:nXII xref: BAMS:XIIn xref: BIRNLEX:820 xref: BTO:0003386 xref: EHDAA2:0000798 xref: EHDAA:2859 xref: EMAPA:17269 xref: FMA:50871 xref: GAID:828 xref: MA:0001094 xref: MBA:813 xref: MESH:D007002 xref: NCIT:C12732 xref: neuronames:704 {source="BIRNLEX:820"} xref: SCTID:362471008 xref: UMLS:C0020614 {source="BIRNLEX:820", source="ncithesaurus:Hypoglossal_Nerve"} xref: VHOG:0000693 xref: Wikipedia:Hypoglossal_nerve xref: XAO:0004215 is_a: UBERON:0001785 ! cranial nerve relationship: dubious_for_taxon NCBITaxon:8292 relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray794.png" xsd:anyURI property_value: external_definition "Cranial nerve that innervates muscles in the tongue. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-14, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000693", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "In amphibians, represents the hypoglossal nerve in amniotes. Innverates mm. geniohyoideus, genioglossus, hyoglossus, rectus cervicis" xsd:string {source="ISBN:080184780X"} property_value: external_definition "Nerve which innervates the muscles associated with the tongue including mm geniohyoideus, genioglossus, hyoglossus and rectus cervicis.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010477", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "we use a broad definition of this cranial nerve that encompasses the amphibian predecessor of true amniote hypoglossal nerves" xsd:string property_value: homology_notes "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000693", ontology="VHOG", source="Wikipedia:Cranial_nerves", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001651 name: right pulmonary artery def: "The pulmonary artery that supplies the right lung." [UBERON:cjm] subset: human_reference_atlas subset: uberon_slim synonym: "arteria pulmonalis dextra" RELATED OMO:0003011 [Wikipedia:Right_pulmonary_artery] synonym: "right main pulmonary artery" EXACT [] synonym: "right pulmonary arterial tree" EXACT [] xref: EMAPA:37378 {source="MA:th"} xref: FMA:50872 xref: galen:RightPulmonaryArtery xref: MA:0002500 xref: NCIT:C33489 xref: SCTID:244235003 xref: UMLS:C0923924 {source="ncithesaurus:Right_Pulmonary_Artery"} xref: Wikipedia:Right_pulmonary_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: editor_note "TODO - add class 'pulmonary artery tree organ'" xsd:string [Term] id: UBERON:0001652 name: left pulmonary artery def: "The pulmonary artery that supplies the left lung." [UBERON:cjm] subset: human_reference_atlas subset: uberon_slim synonym: "arteria pulmonalis sinistra" RELATED OMO:0003011 [Wikipedia:Left_pulmonary_artery] synonym: "left main pulmonary artery" EXACT [] synonym: "left pulmonary arterial tree" EXACT [] xref: EMAPA:37097 {source="MA:th"} xref: FMA:50873 xref: galen:LeftPulmonaryArtery xref: MA:0002032 xref: NCIT:C32971 xref: SCTID:244234004 xref: UMLS:C0923925 {source="ncithesaurus:Left_Pulmonary_Artery"} xref: Wikipedia:Left_pulmonary_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: editor_note "TODO - add class 'pulmonary artery tree organ'" xsd:string [Term] id: UBERON:0001653 name: facial vein def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [Wikipedia:Facial_vein] subset: human_reference_atlas subset: uberon_slim synonym: "anterior facial vein" RELATED INCONSISTENT [Wikipedia:Facial_vein] synonym: "face vein" EXACT [OBOL:automatic] synonym: "vein of face" EXACT [OBOL:automatic] synonym: "vena facialis anterior" RELATED OMO:0003011 [Wikipedia:Facial_vein] xref: AAO:0010513 xref: EMAPA:19220 xref: FMA:50874 xref: MA:0002115 xref: NCIT:C32579 xref: SCTID:181374006 xref: UMLS:C0226532 {source="ncithesaurus:Facial_Vein"} xref: Wikipedia:Facial_vein is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI property_value: external_definition "Vein which collects blood from muscles of the head and drains into the external jugular vein.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010513", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "MA and NCITA also has 'anterior facial vein'" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001654 name: supraorbital vein def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [Wikipedia:Supra-orbital_vein] subset: human_reference_atlas subset: uberon_slim synonym: "supra-orbital vein" EXACT [FMA:50904] xref: EMAPA:37195 {source="MA:th"} xref: FMA:50904 xref: MA:0002228 xref: NCIT:C33707 xref: SCTID:152006005 xref: UMLS:C0226535 {source="ncithesaurus:Supra-orbital_Vein"} xref: Wikipedia:Supraorbital_vein is_a: UBERON:0014768 ! superior palpebral vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI [Term] id: UBERON:0001655 name: submental vein def: "A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein." [ncithesaurus:Submental_Vein] subset: human_reference_atlas xref: EMAPA:37188 {source="MA:th"} xref: FMA:50925 xref: MA:0002223 xref: NCIT:C53128 xref: SCTID:152309009 xref: UMLS:C0226541 {source="ncithesaurus:Submental_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0008199 ! chin relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001656 name: retromandibular vein def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [Wikipedia:Retromandibular_vein] subset: human_reference_atlas subset: uberon_slim synonym: "posterior facial vein" EXACT [] synonym: "vena facialis posterior" RELATED OMO:0003011 [Wikipedia:Retromandibular_vein] synonym: "vena retromandibularis" RELATED OMO:0003011 [Wikipedia:Retromandibular_vein] xref: EMAPA:37182 {source="MA:th"} xref: FMA:50928 xref: MA:0002117 xref: NCIT:C33746 xref: SCTID:151299003 xref: UMLS:C0226520 {source="ncithesaurus:Temporo-maxillary_Vein"} xref: Wikipedia:Retromandibular_vein is_a: UBERON:0001653 ! facial vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI [Term] id: UBERON:0001657 name: superficial temporal vein def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein] subset: human_reference_atlas subset: uberon_slim synonym: "venae temporales superficiales" RELATED OMO:0003011 [Wikipedia:Superficial_temporal_vein] xref: BTO:0003748 xref: EMAPA:19315 xref: FMA:50932 xref: MA:0002242 xref: NCIT:C52700 xref: SCTID:150087005 xref: UMLS:C0226521 {source="ncithesaurus:Superficial_Temporal_Vein"} xref: Wikipedia:Superficial_temporal_vein is_a: UBERON:0001671 ! temporal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI [Term] id: UBERON:0001658 name: middle temporal vein def: "A temporal vein that arises near the lateral angle of the eye; joins the superficial temporal veins to form the retromandibular vein." [http://medical-dictionary.thefreedictionary.com/middle+temporal+vein] subset: human_reference_atlas xref: EMAPA:37176 {source="MA:th"} xref: FMA:50935 xref: MA:0002241 xref: SCTID:151400007 is_a: UBERON:0001671 ! temporal vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001659 name: transverse facial vein def: "A tributary of the superficial temporal or retromandibular veins, anastomosing with the facial vein." [http://medical-dictionary.thefreedictionary.com/transverse+facial+vein] subset: human_reference_atlas subset: uberon_slim xref: EMAPA:37200 {source="MA:th"} xref: FMA:50938 xref: MA:0002247 xref: SCTID:151501009 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI [Term] id: UBERON:0001660 name: maxillary vein def: "A vein that consists of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [Wikipedia:Maxillary_vein] subset: human_reference_atlas subset: uberon_slim xref: EMAPA:37169 {source="MA:th"} xref: FMA:50941 xref: MA:0002169 xref: NCIT:C32855 xref: SCTID:29972009 xref: UMLS:C0226524 {source="ncithesaurus:Internal_Maxillary_Vein"} xref: Wikipedia:Maxillary_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI property_value: taxon_notes "in horses, a branch of the external jugular gives off the occipital and caudal auricular vein" xsd:string [Term] id: UBERON:0001661 name: deep temporal vein def: "The blood vessels at the vertex and on either side of the head that drain deoxygenated blood into the pterygoid venous plexus." [ncithesaurus:Deep_Temporal_Vein] subset: human_reference_atlas xref: EMAPA:37512 {source="MA:th"} xref: FMA:50954 xref: MA:0002240 xref: NCIT:C52699 xref: SCTID:798000 xref: UMLS:C0226526 {source="ncithesaurus:Deep_Temporal_Vein"} is_a: UBERON:0001671 ! temporal vein is_a: UBERON:0035552 ! deep vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001662 name: anterior auricular vein def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [Wikipedia:Anterior_auricular_veins] synonym: "venae auriculares anteriores" RELATED OMO:0003011 [Wikipedia:Anterior_auricular_veins] xref: EMAPA:37132 {source="MA:th"} xref: FMA:50956 xref: MA:0002083 xref: MA:0002214 xref: NCIT:C53027 xref: SCTID:151602009 xref: UMLS:C0226527 {source="ncithesaurus:Anterior_Auricular_Vein"} xref: Wikipedia:Anterior_auricular_veins is_a: UBERON:0006197 ! auricular vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI [Term] id: UBERON:0001663 name: cerebral vein def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [Wikipedia:Cerebral_veins] subset: pheno_slim synonym: "venae cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_veins] synonym: "venae encephali" RELATED OMO:0003011 [Wikipedia:Cerebral_veins] xref: EMAPA:37140 {source="MA:th"} xref: FMA:50981 xref: GAID:530 xref: MA:0002096 xref: MESH:D002550 xref: NCIT:C53037 xref: SCTID:244392000 xref: UMLS:C0007797 {source="ncithesaurus:Cerebral_Vein"} xref: Wikipedia:Cerebral_veins xref: XAO:0004160 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel relationship: fma_set_term FMA:70861 relationship: part_of UBERON:0001893 ! telencephalon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png" xsd:anyURI [Term] id: UBERON:0001664 name: inferior cerebral vein def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebral_veins] subset: human_reference_atlas subset: uberon_slim synonym: "small cerebral vein" RELATED [] xref: EMAPA:37154 {source="MA:th"} xref: FMA:50986 xref: MA:0002097 xref: SCTID:244395003 xref: Wikipedia:Inferior_cerebral_veins is_a: UBERON:0001663 ! cerebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001665 name: triceps surae def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5-S2. [WP,unvetted]." [Wikipedia:Triceps_surae_muscle] subset: human_reference_atlas subset: uberon_slim synonym: "calf muscle" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "gastrosoleus" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "gastrosoleus complex" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "musculus triceps surae" RELATED OMO:0003011 [Wikipedia:Triceps_surae_muscle] synonym: "sural triceps" RELATED [] xref: EMAPA:36267 xref: FMA:51062 xref: MA:0002400 xref: NCIT:C53181 xref: UMLS:C0224458 {source="ncithesaurus:Triceps_Surae"} xref: Wikipedia:Triceps_surae_muscle is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg" xsd:anyURI property_value: external_ontology_notes "A set of muscles in FMA, a single organ in MA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001666 name: flexor digitorum longus def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [Wikipedia:Flexor_digitorum_longus] subset: uberon_slim xref: BTO:0000466 xref: EMAPA:36248 xref: FMA:51071 xref: MA:0002299 xref: NCIT:C52921 xref: SCTID:181703002 xref: UMLS:C1261048 {source="ncithesaurus:Flexor_Digitorum_Longus"} xref: Wikipedia:Flexor_digitorum_longus is_a: UBERON:0001383 ! muscle of leg property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png" xsd:anyURI [Term] id: UBERON:0001667 name: tibialis posterior def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [Wikipedia:Tibialis_posterior_muscle] subset: uberon_slim synonym: "ibialis posticus" RELATED [BTO:0000867] synonym: "musculus tibialis posterior" RELATED OMO:0003011 [Wikipedia:Tibialis_posterior_muscle] synonym: "posterior tibialis" RELATED [BTO:0000867] synonym: "tibialis caudalis" EXACT [] synonym: "tibialis posterior muscle" RELATED [BTO:0000867] xref: BTO:0000867 xref: EMAPA:36255 xref: FMA:51099 xref: MA:0002394 xref: NCIT:C53078 xref: SCTID:361824007 xref: UMLS:C1711425 {source="ncithesaurus:Tibialis_Caudalis"} xref: Wikipedia:Tibialis_posterior_muscle is_a: UBERON:0008230 ! tibialis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png" xsd:anyURI [Term] id: UBERON:0001668 name: cerebellar vein def: "A vein that drains the cerebellum." [http://orcid.org/0000-0002-6601-2165] synonym: "cerebellum vein" EXACT [OBOL:automatic] synonym: "epencephalon-1 vein" EXACT [OBOL:automatic] synonym: "vein of cerebellum" EXACT [OBOL:automatic] synonym: "vein of epencephalon-1" EXACT [OBOL:automatic] xref: EMAPA:37139 {source="MA:th"} xref: FMA:51227 xref: MA:0002093 xref: NCIT:C53032 xref: SCTID:40693009 xref: UMLS:C0226601 {source="ncithesaurus:Cerebellar_Vein"} xref: Wikipedia:Cerebellar_veins is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001669 name: superior cerebellar vein def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Superior_cerebellar_vein] subset: human_reference_atlas subset: uberon_slim synonym: "vein of superior cerebellar hemisphere" EXACT [] xref: EMAPA:37191 {source="MA:th"} xref: FMA:51232 xref: MA:0002095 xref: SCTID:64307009 xref: Wikipedia:Superior_cerebellar_vein is_a: UBERON:0001668 ! cerebellar vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png" xsd:anyURI [Term] id: UBERON:0001670 name: inferior cerebellar vein def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_vein] subset: human_reference_atlas subset: uberon_slim synonym: "inferior vein of cerebellar hemisphere" EXACT [] xref: EMAPA:37153 {source="MA:th"} xref: FMA:51233 xref: MA:0002094 xref: SCTID:69104006 xref: Wikipedia:Inferior_cerebellar_vein is_a: UBERON:0001668 ! cerebellar vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png" xsd:anyURI [Term] id: UBERON:0001671 name: temporal vein def: "Any of the veins draining the temporal region." [http://www.thefreedictionary.com/temporal+vein] subset: uberon_slim xref: EMAPA:37196 {source="MA:th"} xref: FMA:51302 xref: MA:0002239 xref: NCIT:C53140 xref: UMLS:C0924206 {source="ncithesaurus:Temporal_Vein"} xref: Wikipedia:Temporal_vein is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI property_value: external_definition "A vein in front of the ear that drains the head and face and joins with the internal maxillary vein to form the temporo-maxillary vein." xsd:string {source="ncithesaurus:Temporal_Vein"} [Term] id: UBERON:0001672 name: anterior cerebral vein subset: human_reference_atlas subset: vertebrate_core synonym: "ACeV" RELATED [] synonym: "rostral cerebral vein" RELATED [] xref: EMAPA:36467 xref: FMA:51306 xref: SCTID:55155007 xref: TAO:0001067 xref: XAO:0004158 xref: ZFA:0001067 is_a: UBERON:0001663 ! cerebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001673 name: central retinal vein def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [Wikipedia:Central_retinal_vein] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "retinal vein" EXACT [MA:0002213] synonym: "vena centralis retinae" RELATED OMO:0003011 [Wikipedia:Central_retinal_vein] xref: EFO:0004271 xref: EMAPA:37185 {source="MA:th"} xref: FMA:51799 xref: GAID:524 xref: MA:0002213 xref: MESH:D012169 xref: NCIT:C53063 xref: SCTID:280913005 xref: UMLS:C0035327 {source="ncithesaurus:Retinal_Vein"} xref: Wikipedia:Central_retinal_vein is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0000019 ! camera-type eye relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001674 name: masseteric vein def: "A plexiform vein accompanying the masseteric artery that empty into the pterygoid venous plexus." [http://www.drugs.com/dict/masseteric-veins.html] synonym: "masseteric veins" RELATED OMO:0003004 [] xref: EMAPA:37168 {source="MA:th"} xref: FMA:52519 xref: MA:0002167 xref: NCIT:C53051 xref: UMLS:C0925179 {source="ncithesaurus:Masseteric_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001675 name: trigeminal ganglion def: "The cranial ganglion that is associated with and extends fibers into the trigeminal nerve." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/books/NBK53171, https://github.com/obophenotype/uberon/issues/693] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "5th ganglion" EXACT [ZFA:0000295] synonym: "fifth ganglion" EXACT [ZFA:0000295] synonym: "fused trigeminal ganglion" NARROW SENSU [NCBITaxon:32524] synonym: "ganglion of trigeminal complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ganglion of trigeminal nerve" RELATED [BTO:0001231] synonym: "ganglion semilunare" RELATED OMO:0003011 [Wikipedia:Trigeminal_ganglion] synonym: "ganglion trigeminale" RELATED OMO:0003011 [BTO:0001231, Wikipedia:Trigeminal_ganglion] synonym: "Gasser's ganglion" RELATED [BTO:0001231] synonym: "Gasserian ganglia" RELATED OMO:0003004 [Wikipedia:Trigeminal_ganglion] synonym: "Gasserian ganglion" EXACT [Wikipedia:Trigeminal_ganglion] synonym: "gV" RELATED [] synonym: "semilunar ganglion" EXACT [ISBN:0471888893] synonym: "trigeminal ganglia" RELATED OMO:0003004 [] synonym: "trigeminal V ganglion" EXACT [MA:0001080] synonym: "trigeminus ganglion" RELATED [] xref: AAO:0011107 xref: BAMS:5Gn xref: BAMS:GV xref: BTO:0001231 xref: EFO:0000903 xref: EHDAA2:0002085 xref: EHDAA:2113 xref: EMAPA:16797 xref: FMA:52618 xref: GAID:725 xref: MA:0001080 xref: MAT:0000511 xref: MESH:D012668 xref: NCIT:C62642 xref: neuronames:1402 xref: SCTID:244449009 xref: TAO:0000295 xref: UMLS:C0040995 {source="ncithesaurus:Trigeminal_Ganglion"} xref: VHOG:0000694 xref: Wikipedia:Trigeminal_ganglion xref: XAO:0000427 xref: XAO:0000428 xref: ZFA:0000295 is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion is_a: UBERON:0004121 ! ectoderm-derived structure relationship: immediate_transformation_of UBERON:0006304 {source="Bgee:AN"} ! future trigeminal ganglion property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png" xsd:anyURI property_value: editor_note "consider renaming this 'trigeminal ganglion complex'. The complex may be fused (amniotes) partially fused (xenopus) or separate (sharks)" xsd:string property_value: external_definition "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000295", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "In Xenopus, the profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." xsd:string {source="PMID:21452441", source="XAO:0004093"} [Term] id: UBERON:0001676 name: occipital bone def: "The bone at the lower, posterior part of the skull." [ISBN:0-683-40008-8, MP:0005269] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "occipital complex" RELATED [http://palaeos.com/vertebrates/bones/braincase/occiput.html] synonym: "occipital squama" RELATED [] synonym: "os occipitale" RELATED OMO:0003011 [Wikipedia:Occipital_bone] xref: EMAPA:25112 xref: FMA:52735 xref: GAID:227 xref: MA:0001468 xref: MESH:D009777 xref: NCIT:C12757 xref: SCTID:181796003 xref: UMLS:C0028784 {source="ncithesaurus:Occipital_Bone"} xref: Wikipedia:Occipital_bone is_a: UBERON:0010428 {source="FMA"} ! flat bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0003089 {source="PMID:11523816"} ! sclerotome relationship: part_of UBERON:0005902 {source="FMA"} ! occipital region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png" xsd:anyURI property_value: taxon_notes "formed from the sclerotome of the occipital somites. It is not present in living or fossil agnathans or cartilaginous fishes, but appears to have arisen in parallel in many bony fishes. Incorporation of the occipital ver- tebrae into the skull was associated with the annexation of the upper part of the spinal cord into the brain, together with the first 2 spinal nerves as cranial nerves XI and XII" xsd:string {source="PMID:11523816"} property_value: taxon_notes "fusion of basi-, exo- and supra-occipitals (and maybe tabular)" xsd:string {source="Kardong"} [Term] id: UBERON:0001677 name: sphenoid bone def: "An unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [Wikipedia:Sphenoid_bone] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "butterfly bone" RELATED [Wikipedia:Sphenoid_bone] synonym: "os sphenoidale" EXACT OMO:0003011 [FMA:52736, FMA:TA] synonym: "os sphenoidale" RELATED OMO:0003011 [Wikipedia:Sphenoid_bone] synonym: "os sphenoidum" RELATED [Wikipedia:Sphenoid_bone] synonym: "sphenoid" EXACT [] synonym: "sphenoid complex" RELATED [] synonym: "sphenoidal bone" EXACT [] xref: CALOHA:TS-2343 xref: EMAPA:18340 xref: FMA:52736 xref: GAID:230 xref: MA:0001472 xref: MESH:D013100 xref: NCIT:C12790 xref: SCTID:272676008 xref: UMLS:C0037884 {source="ncithesaurus:Sphenoid_Bone"} xref: Wikipedia:Sphenoid_bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone is_a: UBERON:0015060 ! sphenoid endochondral element relationship: develops_from UBERON:0009193 {source="cjm"} ! sphenoid cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg" xsd:anyURI property_value: external_ontology_notes "part of viscerocranium (facial skeleton) in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001678 name: temporal bone def: "The large, irregular bone located at the base and side of the skull; consists of three parts at birth: squamous, tympanic, and petrous." [ISBN:0-683-40008-8, MP:0005272] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "os temporale" RELATED OMO:0003011 [Wikipedia:Temporal_bone] xref: EHDAA:6035 xref: EMAPA:17682 xref: FMA:52737 xref: GAID:232 xref: MA:0001476 xref: MESH:D013701 xref: NCIT:C12797 xref: SCTID:181795004 xref: UMLS:C0039484 {source="ncithesaurus:Temporal_Bone"} xref: VHOG:0000800 xref: Wikipedia:Temporal_bone is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg" xsd:anyURI property_value: external_ontology_notes "Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA" xsd:string {external_ontology="FMA"} property_value: structure_notes "The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part[WP]." xsd:string {source="[WP]"} property_value: taxon_notes "fusion of squamosal + angular (tympanic annulus) [derm.] + petrosal (prootic + opisthotic)" xsd:string {source="chond."} property_value: taxon_notes "In many mammals, as in humans, the petrosal, ectotympanic and squamosal bones synostose to form the temporal bone + styloid process" xsd:string [Term] id: UBERON:0001679 name: ethmoid bone def: "A bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]." [Wikipedia:Ethmoid_bone] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ethmoid" EXACT [FMA:52740] synonym: "ethmoidal bone" EXACT [MP:0000101] synonym: "os ethmoidale" EXACT OMO:0003011 [FMA:52740, FMA:TA, Wikipedia:Ethmoid] xref: BTO:0004140 xref: EMAPA:19018 xref: FMA:52740 xref: GAID:212 xref: MA:0001483 xref: MESH:D005004 xref: NCIT:C12711 xref: SCTID:272674006 xref: UMLS:C0015027 {source="ncithesaurus:Ethmoid_Bone"} xref: VHOG:0001317 xref: Wikipedia:Ethmoid_bone is_a: UBERON:0002513 {source="ISBN:0073040584"} ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0006227 {evidence="definitional"} ! ethmoid bone primordium relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0011241 ! ethmoid region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg" xsd:anyURI property_value: external_definition "A light spongy bone located between the eye sockets, forming part of the walls and septum of the superior nasal cavity, and containing perforations for the passage of olfactory nerve fibers. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001317", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/ethmoid+bone"} property_value: external_ontology_notes "Note the WP states the Neurocranium contains the ethmoid bone, both MA and FMA place the ethmoid as part of the viscerocranium. FMA also has it in neurocranium (via basicranium). Ideally we would have non-overlapping divisions of the skull, but for now we follow FMA" xsd:string {external_ontology="MA"} property_value: has_relational_adjective "ethmoidal" xsd:string property_value: homology_notes "The ethmoid region of the chondrocranium and the nasal capsules, which were largely unossified in early tetrapods and ancestral amniotes, are represented in mammals by the ethmoid and turbinates bones, respectively.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001317", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.259", source="http://bgee.unil.ch/"} property_value: taxon_notes "todo - homology e.g. mesethmoid of teleost" xsd:string [Term] id: UBERON:0001680 name: lacrimal bone def: "The irregularly thin plate that forms part of the medial wall of the orbit behind the frontal process of the maxilla." [ISBN:0-683-40008-8, MP:0005271] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ectethmoid" RELATED [UBERON:3010146] synonym: "infraorbital 1" RELATED SENSU [VHOG:0001149, ZFA:0000223] synonym: "lachrymal bone" EXACT [] synonym: "lachrymal bone - infraorbital 1" RELATED [VHOG:0001149] synonym: "lacrimal" BROAD [] synonym: "lacrimal - infraorbital 1" RELATED [VHOG:0001149] synonym: "lacrymal bone" EXACT [] synonym: "lacrymal bone - infraorbital 1" RELATED [VHOG:0001149] synonym: "os lacrimale" RELATED OMO:0003011 [Wikipedia:Lacrimal_bone] xref: FMA:52741 xref: MA:0001486 xref: NCIT:C32906 xref: SCTID:272675007 xref: UMLS:C0222733 {source="ncithesaurus:Lacrimal_Bone"} xref: VHOG:0001149 xref: Wikipedia:Lacrimal_bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010321 ! skeletal element of eye region is_a: UBERON:0015212 ! lateral structure relationship: dubious_for_taxon NCBITaxon:8292 {source="Wikipedia"} relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:7500102 ! preorbital bone region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png" xsd:anyURI property_value: homology_notes "The infraorbital bone 1 of actinopterygians is homologous with the lacrimal bone (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001149", ontology="VHOG", source="ISBN:978-3899370805 Arratia G, Schultze HP, Wilson MVH, Mesozoic Fishes 4 - Homology and Phylogeny (2008) p.23-48", source="http://bgee.unil.ch/"} property_value: taxon_notes "In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[ISBN 0-03-910284-X]" xsd:string [Term] id: UBERON:0001681 name: nasal bone def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [https://github.com/obophenotype/uberon/issues/265, Wikipedia:Nasal_bone, ZFIN:curator] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nasal bones" RELATED OMO:0003004 [ZFA:0000365] synonym: "nasals" RELATED OMO:0003004 [TAO:0000365] synonym: "os nasale" RELATED OMO:0003011 [Wikipedia:Nasal_bone] xref: AAO:0000312 xref: EMAPA:19202 xref: FMA:52745 xref: GAID:222 xref: MA:0001494 xref: MESH:D009295 xref: NCIT:C33157 xref: SCTID:181801008 xref: TAO:0000365 xref: UMLS:C0027422 {source="ncithesaurus:Nasal_Bone"} xref: VHOG:0001370 xref: Wikipedia:Nasal_bone xref: ZFA:0000365 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010428 {source="FMA"} ! flat bone is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0003113 {notes="facial series", source="ISBN:0073040584"} ! dermatocranium relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: overlaps mesethmoid-nasal joint (TAO:0001677)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000365", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000312", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg" xsd:anyURI property_value: external_comment "Synonym adnasal used in Weitzman 1960, and synonym discussed in Vari 1995.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000365", ontology="TAO", source="Curator"} property_value: external_definition "Paired bone of intramembranous origin that roofs the olfactory capsule.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000312", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000365", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X)" xsd:string [Term] id: UBERON:0001682 name: palatine bone def: "A paired dermal bone situated in the mid-palate that helps form the hard palate [Palaeos]." [http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html, Wikipedia:Palatine_bone] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "dermopalatine" NARROW [http://palaeos.com/vertebrates/glossary/glossaryD.html] synonym: "os palatinum" RELATED OMO:0003011 [] synonym: "palate bone" RELATED [] synonym: "palatine" EXACT [] synonym: "palatum" RELATED [Wikipedia:Palatine_bone] xref: EMAPA:36619 xref: FMA:52746 xref: http://palaeos.com/vertebrates/bones/dermal/images/289x311xPalatine1.gif.pagespeed.ic.tglmNBrF4D.png xref: MA:0001495 xref: NCIT:C52745 xref: SCTID:244654005 xref: TAO:0000015 xref: UMLS:C0222734 {source="ncithesaurus:Palatine_Bone"} xref: Wikipedia:Palatine_bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011597 ! bone of upper jaw is_a: UBERON:0012071 ! palate bone is_a: UBERON:0015212 ! lateral structure relationship: never_in_taxon NCBITaxon:32519 {source="TAO"} relationship: part_of UBERON:0011085 ! palatoquadrate arch relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/44/Gray996.png" xsd:anyURI property_value: external_comment "Dermopalatine: same as palatine. The prefix is used by fish people because the palatine is a dermal replacement bone for a section of the autopalatine section of the palatoquadrate. In that context, palatine is potentially ambiguous.[Palaeos]" xsd:string {date_retrieved="2012-09-17", source="http://palaeos.com/vertebrates/glossary/glossaryD.html"} property_value: external_comment "In ostariophysans, the dermopalatine is absent.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000015", ontology="TAO", source="Curator"} property_value: external_definition "Dermal bone that forms the antero-lateral region of the palate and is located ventral to the autopalatine. The dermopalatine is bilaterally paired and usually bears teeth.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000015", ontology="TAO", source="TAO:GA_TG"} property_value: taxon_notes "Fusion of dermopalatine+autopalatine." xsd:string [Term] id: UBERON:0001683 name: jugal bone def: "The quadrilateral bone that forms the prominence of the cheek." [ISBN:0-683-40008-8, MP:0005270] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cheek bone" EXACT [] synonym: "jugal" RELATED [Wikipedia:Zygomatic_bone] synonym: "jugal bone" RELATED [GAID:225, Wikipedia:Zygomatic_bone] synonym: "jugale" RELATED SENSU [] synonym: "malar bone" EXACT [FMA:52747] synonym: "orbital bone" EXACT [] synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA] synonym: "os zygomaticum" RELATED OMO:0003011 [Wikipedia:Zygomatic_bone] synonym: "os zygomaticus" RELATED [Wikipedia:Zygomatic_bone] synonym: "zygoma" RELATED [GAID:225, Wikipedia:Zygomatic_bone] synonym: "zygomatic" RELATED [] synonym: "zygomatic bone" EXACT HUMAN_PREFERRED [https://github.com/obophenotype/uberon/issues/121, MA:0001497] xref: EMAPA:25111 xref: FMA:52747 xref: GAID:225 xref: MA:0001497 xref: MESH:D015050 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MFMO:0000146 xref: SCTID:272683001 xref: VHOG:0001638 xref: Wikipedia:Jugal_bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010321 ! skeletal element of eye region is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:7500102 ! preorbital bone region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png" xsd:anyURI property_value: external_definition "The jugal is a skull bone found in most reptiles, amphibians, and birds. In mammals, the jugal is often called the malar or Zygomatic. It is connected to the quadratojugal and maxilla, as well as other bones, which may vary by species. This bone is considered key in the determination of general traits of the skull, in the case of creatures, as with dinosaurs in paleontology, whose entire skull has not been found[Wikipedia:Jugal_bone]." xsd:string {source="Wikipedia:Jugal_bone"} property_value: external_definition "The zygomatic bone is a paired dermal bone which articulates with the maxilla. In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders[WP,modified][Wikipedia:Zygomatic_bone]." xsd:string {source="Wikipedia:Zygomatic_bone"} property_value: homology_notes "(...) and the infraorbital bone 3 of advanced actinopterygians (is homologous) with the jugal bone of sarcopterygians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001638", ontology="VHOG", source="ISBN:978-3899370805 Arratia G, Schultze HP, Wilson MVH, Mesozoic Fishes 4 - Homology and Phylogeny (2008) p.23-48", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders [Wikipedia:Zygomatic_bone, Wikipedia:Jugal_bone]" xsd:string property_value: taxon_notes "vHOG says is homologous to infraorbital 3." xsd:string [Term] id: UBERON:0001684 name: mandible def: "A dentary bone that is the only bone in one of the lateral halves of the lower jaw skeleton." [Wikipedia:Human_mandible, Wikipedia:Mandible] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "inferior maxillary bone" EXACT [] synonym: "lower jaw" BROAD SENSU [] synonym: "lower jaw bone" BROAD SENSU [] synonym: "lower mandibula" NARROW SENSU [Wikipedia:Mandible] synonym: "mammaliam mandible" EXACT [] synonym: "mandibula" RELATED OMO:0003011 [BTO:0001748, Wikipedia:Human_mandible] synonym: "mandibular series" RELATED [ZFA:0001273] synonym: "mandibulla" EXACT [] xref: BTO:0001748 xref: CALOHA:TS-2225 xref: EFO:0001965 xref: EHDAA2:0001059 xref: EHDAA:8007 xref: EMAPA:18290 xref: FMA:52748 xref: GAID:68 xref: galen:Mandible xref: MA:0001487 xref: MESH:D008334 xref: NCIT:C12290 xref: SCTID:181812008 xref: UMLS:C0024687 {source="ncithesaurus:Mandible"} xref: Wikipedia:Human_mandible is_a: UBERON:0002514 {source="EHDAA2"} ! intramembranous bone is_a: UBERON:0004742 ! dentary relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png" xsd:anyURI property_value: editor_note "consider merging with dentary - for now we make it a mammal-specific subclass." xsd:string property_value: external_ontology_notes "Note in ZFA 'mandible' is a syn for the ventral mandibular arch, which is a portion of the 1st pharyngeal arch; however the term 'mandibular symphysis' refers to the dentary" xsd:string {external_ontology="ZFA"} property_value: has_relational_adjective "mandibular" xsd:string property_value: terminology_notes "'mandible' also refers to either the upper OR lower part of the beak in birds" xsd:string [Term] id: UBERON:0001685 name: hyoid bone def: "A horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. [WP,modified]." [Wikipedia:Hyoid_bone] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "hyoid" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoid bone" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoideum" RELATED [Wikipedia:Hyoid_bone] synonym: "lingual bone" RELATED [Wikipedia:Hyoid_bone] synonym: "os hyoideum" RELATED OMO:0003011 [Wikipedia:Hyoid_bone] xref: AAO:0000684 xref: EMAPA:18650 xref: FMA:52749 xref: GAID:197 xref: MA:0001484 xref: MESH:D006928 xref: NCIT:C32752 xref: SCTID:263352000 xref: UMLS:C0020417 {source="ncithesaurus:Hyoid_Bone"} xref: VHOG:0001325 xref: Wikipedia:Hyoid_bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0010272 ! hyoid apparatus relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of hyoid plate (AAO:0000664)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000684", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png" xsd:anyURI property_value: external_definition "Paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes are the ossified posteromedial processes and invest the laryngeal apparatus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000684", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "The hyoid bone is derived from the lower half of the second gill arch in fish, which separates the first gill slit from the spiracle. In many animals, it also incorporates elements of other gill arches, and has a correspondingly greater number of cornua. Amphibians and reptiles may have many cornua, while mammals (including humans) have two pairs, and birds only one. In birds, and some reptiles, the body of the hyoid is greatly extended forward, creating a solid bony support for the tongue. The howler monkey Alouatta has a pneumatized hyoid bone, one of the few cases of postcranial pneumatization of bones outside Saurischia." xsd:string {source="WP", seeAlso="https://github.com/obophenotype/uberon/issues/548"} [Term] id: UBERON:0001686 name: auditory ossicle bone def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/91, Wikipedia:Auditory_ossicle] subset: pheno_slim subset: uberon_slim synonym: "auditory bone" EXACT [] synonym: "auditory ossicle" RELATED [MA:0000254] synonym: "ear bone" RELATED [MA:0000254] synonym: "ear ossicle" RELATED [] synonym: "ear ossicles" RELATED OMO:0003004 [] synonym: "middle ear bone" RELATED [] synonym: "middle ear ossicle" EXACT [MP:0005105] synonym: "ossicle" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle] synonym: "ossicle of ear" RELATED [] synonym: "ossicle of inner ear" RELATED [] synonym: "ossicular chain" RELATED OMO:0003004 [] xref: AAO:0011015 xref: EHDAA2:0001183 xref: EHDAA:5697 xref: EMAPA:17824 xref: EV:0100360 xref: FMA:52750 xref: MA:0000254 xref: NCIT:C32164 xref: SCTID:181184001 xref: UMLS:C0013450 {source="ncithesaurus:Auditory_Ossicle"} xref: VHOG:0000461 xref: Wikipedia:Auditory_ossicle xref: XAO:0000214 is_a: UBERON:0003457 ! head bone is_a: UBERON:0035130 ! auditory ossicle endochondral element property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg" xsd:anyURI property_value: development_notes "Studies have shown that ear bones in mammal embryos are attached to the dentary, which is part of the jaw. These are ossified portions of cartilage -- called Meckel's cartilage -- that are attached to the jaw. As the embryo develops, the cartilage hardens to form bone. Later in development, the bone structure breaks loose from the jaw and migrates to the inner ear area. The structure is known as the middle ear, and is made up of the incus, stapes, malleus, and tympanic membrane. These correspond to the quadrate, prearticular, articular, and angular structures in the reptile jaw. For this reason, researchers believe the similarity of the results shows that mammals and reptiles have a common ancestry." xsd:string {source="WP"} property_value: editor_note "This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5." xsd:string property_value: external_definition "The small bones of the middle ear: incus, malleus, and stapes. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/auditory+ossicles"} property_value: homology_notes "Additional structural analysis within a phylogenetic context has led to the remarkable discovery that in synapsids, thought to be ancestral to mammals, both the quadrate and articular have become reduced and less firmly articulated with their surrounding bones, reducing their jaw-joint-bearing role. This trend culminated with the incorporation of the quadrate, the columella (which remains articulated with the quadrate), and the articular into the expanded middle ear in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.695", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001687 name: stapes bone def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [DOI:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] synonym: "columellare" RELATED [AAO:0000580] synonym: "interstapediale" RELATED [AAO:0000580] synonym: "mediostapediale" RELATED [AAO:0000580] synonym: "mesostapediale" RELATED [AAO:0000580] synonym: "os columellare" RELATED [AAO:0000580] synonym: "os intermedium" RELATED [AAO:0000580] synonym: "stapellos" RELATED OMO:0003011 [Wikipedia:Stapes] synonym: "stapes" RELATED [AAO:0000580] synonym: "stelidium" RELATED [AAO:0000580] synonym: "stilus columellare" RELATED [AAO:0000580] synonym: "stirrup" EXACT [] xref: EMAPA:18585 xref: FMA:52751 xref: GAID:868 xref: MA:0001217 xref: MESH:D013199 xref: NCIT:C33612 xref: SCTID:264199009 xref: UMLS:C0038152 {source="ncithesaurus:Stapes"} xref: Wikipedia:Stapes is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015016 ! stapes endochondral element relationship: develops_from UBERON:0004368 {contradicted_by="DOI:10.1111/j.1469-7580.2006.00524.x", source="classical definition"} ! Reichert's cartilage relationship: develops_from UBERON:0010055 {source="definitional"} ! stapes cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png" xsd:anyURI property_value: development_notes "As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes." xsd:string {source="DOI:10.1111/j.1469-7580.2005.00441.x"} property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)", source="http://bgee.unil.ch/"} property_value: taxon_notes "'This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.' Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357?[VHOG]." xsd:string [Term] id: UBERON:0001688 name: incus bone def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "incus" EXACT [MA:0001215] synonym: "incus bone" EXACT [] synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 xref: FMA:52752 xref: GAID:866 xref: MA:0001215 xref: MESH:D007188 xref: NCIT:C32770 xref: SCTID:272649008 xref: UMLS:C0021181 {source="ncithesaurus:Incus"} xref: Wikipedia:Incus is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0015017 ! incus endochondral element relationship: develops_from UBERON:0007374 {source="EMAPA-implied"} ! incus cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png" xsd:anyURI property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000689", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001689 name: malleus bone def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] synonym: "malleus" BROAD [MA:0001216] synonym: "malleus" EXACT OMO:0003011 [Wikipedia:Malleus] xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 xref: MA:0001216 xref: MESH:D008307 xref: NCIT:C33051 xref: SCTID:264090005 xref: UMLS:C0024631 {source="ncithesaurus:Malleus"} xref: Wikipedia:Malleus is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015018 ! malleus endochondral element relationship: develops_from UBERON:0010054 {source="cjm"} ! malleus cartilage element relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png" xsd:anyURI property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000690", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001690 name: ear def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "auditory apparatus" RELATED [] synonym: "auris" RELATED [BTO:0000368] xref: AAO:0011014 xref: BIRNLEX:1062 xref: BTO:0000368 xref: CALOHA:TS-1165 xref: EFO:0000826 xref: EHDAA2:0000423 xref: EHDAA:502 xref: EMAPA:16193 xref: EV:0100353 xref: FMA:52780 xref: GAID:62 xref: galen:Ear xref: MA:0000236 xref: MAT:0000138 xref: MESH:D004423 xref: MIAA:0000138 xref: NCIT:C12394 xref: SCTID:1910005 xref: UMLS:C0013443 {source="ncithesaurus:Ear", source="BIRNLEX:1062"} xref: UMLS:C0521421 {source="BIRNLEX:1062"} xref: VHOG:0000330 xref: Wikipedia:Ear xref: XAO:0000189 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg" xsd:anyURI property_value: external_definition "The organ of hearing and of equilibrium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000330", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/ear"} property_value: has_relational_adjective "auricular" xsd:string property_value: homology_notes "Both vertebrate and invertebrate auditory organs are thought to have evolved from primitive mechanosensors, but the nature of the ancestral structure and the evolutionary trajectories followed in distinct animal lineages remain unknown. In particular, we do not know how many types of mechanosensor existed in the protostome-deuterostome ancestor from which insects and vertebrates evolved or whether the PDA had an auditory organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000330", ontology="VHOG", source="DOI:10.1002/dvdy.20207 Boekhoff-Falk G, Hearing in Drosophila: Development of Johnston's organ and emerging parallels to vertebrate ear development. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001691 name: external ear def: "Part of the ear external to the tympanum (eardrum). It typically consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "auricular region" BROAD [] synonym: "auricular region of head" EXACT [] synonym: "auris externa" RELATED [BTO:0002100] synonym: "outer ear" EXACT [MA:0000258] xref: AAO:0011037 xref: BIRNLEX:1705 xref: BTO:0002100 xref: EFO:0004221 xref: EHDAA2:0000462 xref: EHDAA:3786 xref: EMAPA:16991 xref: EV:0100354 xref: FMA:52781 xref: GAID:104 xref: MA:0000258 xref: MAT:0000147 xref: MESH:D004431 xref: MIAA:0000147 xref: NCIT:C12292 xref: SCTID:420893000 xref: UMLS:C0013453 {source="ncithesaurus:External_Ear", source="BIRNLEX:1705"} xref: UMLS:C1269548 {source="BIRNLEX:1705"} xref: VHOG:0000311 xref: Wikipedia:External_ear xref: XAO:0000190 is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure relationship: never_in_taxon NCBITaxon:9709 {source="Wikipedia"} relationship: part_of UBERON:0001690 ! ear property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Gray907.png" xsd:anyURI property_value: external_definition "The external part of the organ, which consists of an outer portion (external auditory meatus) which leads to the tympanum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000311", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_ontology_notes "in XAO this includes and is only the tympanum" xsd:string {external_ontology="XAO"} property_value: homology_notes "Some species, like Amolops tormotus (Feng et al. 2006), have a cavity in front of the tympanic membrane which is considered to be an ear canal and thus an outer ear. (...) The ancestral lineage of amphibians separated from the mammalian lineage, approximately 350 million years ago, in the paleozoic era. Many of the important developments in the auditory systems emerged after the ancestral paths separated (Manley and Clack 2003). This implies that shared features, like the tympanic middle ear, developed independently in different vertebrate lineages.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000311", ontology="VHOG", source="DOI:10.1007/s00359-008-0327-1 Schoffelen RLM, Segenhout JM, Van Dijk P, Mechanics of the exceptional anuran ear. Journal of Comparative Physiology A (2008)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001692 name: basioccipital bone def: "One of the bones of the occiput, the part of the skull which articulates with the spine. The basioccipital is located (if present) ventral to the foramen magnum. It often rests on or articulates with the basisphenoid, as well as meeting the exoccipitals. The basioccipital usually forms most (sometimes all) of the occipital condyle(s) and the ventral margin of the foramen magnum." [http://palaeos.com/vertebrates/glossary/glossaryB.html, Wikipedia:Basilar_part_of_occipital_bone] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "basi-occipital" EXACT [] synonym: "basilar part of occipital bone" EXACT [] synonym: "basioccipital" EXACT [] synonym: "basioccipital bone" EXACT [] synonym: "pars basilaris ossis occipitalis" RELATED OMO:0003011 [Wikipedia:Basilar_part_of_occipital_bone] xref: AAO:0000039 xref: EMAPA:18705 xref: FMA:52858 xref: MA:0001462 xref: MFMO:0000045 xref: SCTID:138976007 xref: TAO:0000472 xref: VHOG:0001152 xref: Wikipedia:Basilar_part_of_occipital_bone xref: ZFA:0000472 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0015048 ! basioccipital endochondral element relationship: develops_from UBERON:0006209 ! basioccipital cartilage element property_value: axiom_lost_from_external_ontology "relationship loss: overlaps basioccipital-exoccipital joint (TAO:0002038)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000472", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps parasphenoid-basioccipital joint (TAO:0001832)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000472", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000472", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c4/Parsbasilaris%28young%29.PNG" xsd:anyURI property_value: editor_note "TODO - check FMA" xsd:string property_value: external_comment "In some teleosts the anterior vertebral centra fuse to the basioccipital forming a monopartite occipital condyle.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000472", ontology="TAO", source="Curator"} property_value: external_definition "An unpaired medial bone contributing to the ventral margin of the foramen magnum that extends into the floor of the brain cavity. It can contribute to the centromedial portion of the occipital condyle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000039", ontology="AAO", source="AAO:EJS"} property_value: external_definition "Chondral bone that articulates with the exoccipitals dorsally, the prootics anteriorly, the parasphenoid ventrally, and the first free vertebra posteriorly. The basioccipital forms the floor of the foramen magnum. The basioccipital is an unpaired medial bone.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000472", ontology="TAO", source="TAO:GA_TG"} [Term] id: UBERON:0001693 name: exoccipital bone def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [Wikipedia:Lateral_parts_of_occipital_bone, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "exoccipital" EXACT [FMA:52859] synonym: "exoccipitals" EXACT OMO:0003004 [TAO:0000661] synonym: "lateral part of occipital bone" EXACT [FMA:52859] synonym: "pars lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_parts_of_occipital_bone] synonym: "pars lateralis ossis occipitalis" EXACT OMO:0003011 [FMA:52859, FMA:TA] xref: AAO:0000147 xref: EMAPA:18708 xref: FMA:52859 xref: MA:0001464 xref: SCTID:139279001 xref: TAO:0000661 xref: VHOG:0001151 xref: Wikipedia:Lateral_parts_of_occipital_bone xref: ZFA:0000661 is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0015051 ! exoccipital endochondral element relationship: develops_from UBERON:0009635 {source="ZFA"} ! parachordal cartilage relationship: develops_from UBERON:0010752 ! exoccipital cartilage element property_value: axiom_lost_from_external_ontology "relationship loss: develops_from occipital arch cartilage (TAO:0001504)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000661", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps basioccipital-exoccipital joint (TAO:0002038)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000661", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps prootic-exoccipital joint (TAO:0002034)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000661", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000661", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png" xsd:anyURI property_value: editor_note "TODO - check FMA - currently we place this as both of a zone of bone organ and an (endochondral) bone. Removed endochondral bone classification for now, violates disjointness axiom" xsd:string property_value: external_comment "In some teleosts the exoccipital dorsally contacts the supraoccipital directly or through connective tissue.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000661", ontology="TAO", source="Curator"} property_value: external_definition "Endochondral bone that articulates with the epiotic dorsally, the pterotic and intercalar laterally and the basioccipital medio-ventrally. The exoccipitals form the lateral borders of the foramen magnum and houses the foramina for the passage of the vagus and glossopharyngeal nerves, X and IX respectively. The exoccipital is a paired bone.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000661", ontology="TAO", source="TAO:GA_TG"} property_value: external_definition "Endochondral bone that forms the posterior end of the neurocranium and the margin of the foramen magnum. In addition, this bone forms either part of or all or the occipital condyle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000147", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001694 name: petrous part of temporal bone def: "The petrous portion of the temporal bone or pyramid is pyramidal and is wedged in at the base of the skull between the sphenoid and occipital bones. Directed medially, forward, and a little upward, it presents for examination a base, an apex, three surfaces, and three angles, and contains, in its interior, the essential parts of the organ of hearing. The petrous portion is among the most basal elements of the skull and forms part of the endocranium.[WP,unvetted]." [Wikipedia:Petrous_part_of_the_temporal_bone] subset: uberon_slim synonym: "pars petrosa (os temporale)" EXACT [FMA:52871] synonym: "pars petrosa ossis temporalis" EXACT [] synonym: "petromastoid part of temporal bone" EXACT [FMA:52871] synonym: "petrosal" BROAD [VHOG:0001553] synonym: "petrosal bone" RELATED [FMA:52871] synonym: "petrous bone" RELATED [FMA:52871] synonym: "temporal bone petrous part" EXACT [] xref: EHDAA2:0001452 xref: EMAPA:17683 xref: FMA:52871 xref: GAID:234 xref: MA:0001477 xref: MESH:D010579 xref: NCIT:C32316 xref: SCTID:361733004 xref: UMLS:C1261761 {source="ncithesaurus:Ciliary_Process"} xref: VHOG:0001553 xref: Wikipedia:Petrous_part_of_the_temporal_bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001678 ! temporal bone relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png" xsd:anyURI property_value: external_definition "The petrosal bone arises from the two otic bones on the lateral wall of the chondrocranium and encases the inner ear of mammals. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.258, see_Liem_KF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001553", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: taxon_notes "derivative of prootic and opisthotic" xsd:string [Term] id: UBERON:0001695 name: squamous part of temporal bone def: "A bone which is fused with the temporal bone in many mammals and forms part of the cheek region articulating with quadrate and pterygoid in other vertebrates." [https://github.com/obophenotype/uberon/issues/122, MP:0004423, Wikipedia:Squama_temporalis, Wikipedia:Squamosal_bone] subset: pheno_slim synonym: "os squamosum" EXACT OMO:0003011 [] synonym: "pars squamosa (os temporale)" EXACT [] synonym: "pars squamosa ossis temporalis" EXACT OMO:0003011 [FMA:52883, FMA:TA] synonym: "squama" RELATED [] synonym: "squama temporalis" EXACT [Wikipedia:Squama_temporalis] synonym: "squamosal" EXACT [AAO:0000574] synonym: "squamosal bone" EXACT [https://github.com/obophenotype/uberon/issues/122, MA:0001473] synonym: "squamosum" EXACT [] synonym: "squamous bone" EXACT [https://github.com/obophenotype/uberon/issues/122] synonym: "temporal bone squamous part" EXACT [MP:0004423, VHOG:0001561] xref: AAO:0000574 xref: EMAPA:18021 xref: FMA:52883 xref: MA:0001473 xref: SCTID:138672006 xref: VHOG:0001561 xref: Wikipedia:Squamosal_bone is_a: UBERON:0002514 {source="EHDAA2-inferred"} ! intramembranous bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0010751 ! squamous part of temporal bone primordium relationship: part_of UBERON:0001678 {notes="see comments"} ! temporal bone relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0004339 {source="EHDAA2", source="PMID:11523816"} ! vault of skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png" xsd:anyURI property_value: editor_note "consider separate class for squamosal OR making squamosal the primary label" xsd:string property_value: external_definition "Paired, intramembranous bones that lie at the posterolateral margins of the skull. Lateral and dorsal to the quadrate.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000574", ontology="AAO", source="AAO:EJS"} property_value: external_definition "The squamosal bone is part of the dermatocranium in early tetrapods and becomes part of the mammalian occipital and temporal bones. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.246, see_Liem_KF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001561", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: taxon_notes "The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles" xsd:string [Term] id: UBERON:0001697 name: orbit of skull def: "Subdivision of skeleton that is an anterolateral part of the cranium and structurally supports the eye. Includes bones formed and located in sclerotic layer of eyeball." [http://orcid.org/0000-0002-6601-2165, TAO:0001410, Wikipedia:Orbit_(anatomy)] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bony orbit" EXACT [] synonym: "eye socket" EXACT [] synonym: "orbit" RELATED [ZFA:0001410] synonym: "orbit of skull" EXACT [FMA:53074] xref: BTO:0004687 xref: FMA:53074 xref: GAID:223 xref: galen:Orbit xref: MA:0002482 xref: MESH:D009915 xref: NCIT:C12347 xref: TAO:0001410 xref: UMLS:C0029180 {source="ncithesaurus:Orbit"} xref: Wikipedia:Orbit_(anatomy) xref: XAO:0003171 xref: ZFA:0001410 is_a: UBERON:0010912 ! subdivision of skeleton is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0004088 ! orbital region relationship: part_of UBERON:0011156 ! facial skeleton property_value: external_definition "Anatomical cluster that is a anterolateral part of the cranium and structurally supports the eye.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001410", ontology="TAO", source="TAO:MAH"} property_value: external_ontology_notes "in FMA, this overlaps with bones such as the maxilla and sphenoid; in ZFA, individual bones are part of the orbit" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001698 name: foramen ovale of skull def: "One of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [Wikipedia:Foramen_ovale_(skull)] synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155] synonym: "foramen ovale (skull)" EXACT [FMA:53155] synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii] synonym: "foramen ovale cranii" EXACT [] synonym: "foramen ovale of chondrocranium" EXACT [EMAPA:18711] synonym: "foramen ovale of cranium" EXACT [] synonym: "foramen ovale of sphenoid" RELATED [FMA:53155] xref: AAO:0000169 xref: EHDAA2:0000551 xref: EHDAA:10627 xref: EMAPA:18711 xref: FMA:53155 xref: galen:ForamenOvaleBasisCranii xref: SCTID:369441001 xref: VHOG:0001189 xref: Wikipedia:Foramen_ovale_(skull) is_a: UBERON:0013685 ! foramen of skull property_value: external_definition "An aperture in the great wing of the sphenoid for vessels and nerves. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001189", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/foramen+ovale"} [Term] id: UBERON:0001699 name: sensory root of facial nerve def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [Wikipedia:Intermediate_nerve] subset: uberon_slim subset: vertebrate_core synonym: "intermediate nerve" RELATED [FMA:53410] synonym: "nerve of Wrisberg" RELATED [] synonym: "nervus intermedius" RELATED OMO:0003011 [FMA:53410, FMA:TA] synonym: "pars intermedii of Wrisberg" RELATED [] synonym: "sensory component of the VIIth (facial) nerve" EXACT [] synonym: "sensory roots of facial nerves" RELATED OMO:0003004 [ZFA:0000679] synonym: "Wrisberg's nerve" RELATED [FMA:53410] xref: BAMS:imn xref: BAMS:iVIIn xref: DHBA:12864 xref: FMA:53410 xref: MBA:1131 xref: neuronames:552 xref: SCTID:279927001 xref: TAO:0000679 xref: Wikipedia:Intermediate_nerve xref: ZFA:0000679 is_a: UBERON:0004674 ! facial nerve root relationship: develops_from UBERON:0003099 {source="Wikipedia"} ! cranial neural crest relationship: part_of UBERON:0001896 ! medulla oblongata property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png" xsd:anyURI [Term] id: UBERON:0001700 name: geniculate ganglion def: "The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve)." [ISBN:0-683-40008-8, MP:0001082] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "facial ganglion" RELATED [ZFA:0001291] synonym: "facial VII ganglion" EXACT [MA:0001076] synonym: "ganglion genicularum" EXACT [FMA:53414] synonym: "ganglion geniculi" RELATED [Wikipedia:Geniculate_ganglion] synonym: "ganglion geniculi nervi facialis" RELATED OMO:0003011 [Wikipedia:Geniculate_ganglion] synonym: "genicular ganglion" EXACT [FMA:53414, Wikipedia:Geniculate_ganglion] synonym: "geniculate" BROAD [Wikipedia:Geniculate_ganglion] synonym: "geniculate ganglion" RELATED [MA:0001076] synonym: "gVII" EXACT [ZFA:0001291] synonym: "internal genu" RELATED [Wikipedia:Geniculate_ganglion] xref: BAMS:GgVII xref: EFO:0003669 xref: EHDAA2:0000491 xref: EHDAA2:0004623 xref: EHDAA:5567 xref: EHDAA:6644 xref: EMAPA:17569 xref: FMA:53414 xref: GAID:718 xref: MA:0001076 xref: MESH:D005830 xref: NCIT:C12721 xref: neuronames:1535 xref: SCTID:279076005 xref: TAO:0001291 xref: UMLS:C0017406 {source="ncithesaurus:Geniculate_Ganglion"} xref: VHOG:0000707 xref: Wikipedia:Geniculate_ganglion xref: ZFA:0001291 is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion is_a: UBERON:0009127 ! epibranchial ganglion is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0009124 {source="EHDAA2:0004623", source="ZFA"} ! geniculate placode relationship: develops_from UBERON:0010258 {source="EHDAA2:0004623"} ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0012175 {source="EHDAA2:0000491"} ! acoustico-facial VII-VIII ganglion complex relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png" xsd:anyURI property_value: editor_note "resolve facial VII vs geniculate (see EHDAA2)" xsd:string property_value: homology_notes "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000707", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001701 name: glossopharyngeal ganglion def: "The group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001096] subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "ganglion of glossopharyngeal nerve" EXACT [] synonym: "ganglion of glosspharyngeal nerve" EXACT [FMA:53471] synonym: "gIX" RELATED [] synonym: "glossopharyngeal IX ganglion" EXACT [MA:0001077] synonym: "petrosal ganglion" NARROW [ZFA:0001301] xref: EHDAA2:0000710 xref: EHDAA:2838 xref: EMAPA:16795 xref: FMA:53471 xref: MA:0001077 xref: SCTID:244451008 xref: TAO:0001301 xref: VHOG:0000702 xref: ZFA:0001301 is_a: UBERON:0009127 {source="ZFA"} ! epibranchial ganglion relationship: present_in_taxon NCBITaxon:9606 property_value: homology_notes "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000702", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001702 name: eyelash def: "Any of the hairs that grow at the edge of the upper or lower eyelid." [MGI:anna] subset: pheno_slim subset: uberon_slim synonym: "blepharis" RELATED [] synonym: "cilia" RELATED OMO:0003011 [Wikipedia:Eyelash] synonym: "cilium" RELATED OMO:0003011 [Wikipedia:Eyelash] synonym: "eyelid cilia" RELATED OMO:0003004 [] synonym: "eyelid cilium" EXACT [] synonym: "hair of eyelid" RELATED [] xref: FMA:53669 xref: GAID:73 xref: MA:0002702 xref: MESH:D005140 xref: NCIT:C32576 xref: SCTID:244201001 xref: UMLS:C0015422 {source="ncithesaurus:Eyelash"} xref: Wikipedia:Eyelash is_a: UBERON:0001037 ! strand of hair relationship: fma_set_term FMA:70742 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/N2_Human_eye.jpg" xsd:anyURI property_value: function_notes "eyelashes protect the eye from debris and are sensitive to touch, thus providing a warning that an object is near the eye (which is then closed reflexively)" xsd:string [Term] id: UBERON:0001703 name: neurocranium def: "Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof." [PMID:11523816, TAO:MAH, Wikipedia:Neuroranium, ZFA:0001580] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "brain box" EXACT [] synonym: "brain case" RELATED [ZFA:0001580] synonym: "brain pan" RELATED [http://www.thefreedictionary.com/braincase] synonym: "braincase" RELATED [ZFA:0001580] xref: FMA:53672 xref: MA:0000317 xref: SCTID:361731002 xref: TAO:0001580 xref: Wikipedia:Neuroranium xref: XAO:0003170 xref: ZFA:0001580 is_a: UBERON:0011158 {source="FMA"} ! primary subdivision of skull relationship: develops_from UBERON:0004761 ! cartilaginous neurocranium relationship: part_of UBERON:0003128 ! cranium relationship: present_in_taxon NCBITaxon:9606 property_value: development_notes "The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]." xsd:string {source="WP"} property_value: external_definition "Anatomical cluster that consists of the cartilages and bones that surround the brain.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001580", ontology="TAO", source="TAO:MAH"} property_value: external_ontology_notes "It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ..." xsd:string {external_ontology="MA"} property_value: has_relational_adjective "neurocranial" xsd:string property_value: structure_notes "It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton" xsd:string [Term] id: UBERON:0001704 name: obsolete viscerocranium xref: Wikipedia:Facial_skeleton property_value: curator_notes "this class was made obsolete as it conflated the facial skeleton with the splanchnocranium. The facial skeleton includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it) (See also notes for ethmoid bone). The splanchoncranium is the endoskeleton derived from pharyngeal arches." xsd:string is_obsolete: true consider: UBERON:0008895 consider: UBERON:0011156 [Term] id: UBERON:0001705 name: nail def: "A horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]." [https://github.com/obophenotype/uberon/issues/120, Wikipedia:Nail_(anatomy)] comment: The nails of humans and the claws are moth are highly similar. Both species have a proximal nail fold, cuticle, nail matrix, nail bed, nail plate, and hyponychium. Distinguishing features are the shape of the nail and the presence of an extended hyponychium in the mouse [PMC3579226] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "claw" NARROW SENSU [Wikipedia:Claw] synonym: "nail/claw" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "talon" RELATED [] xref: BTO:0001719 xref: CALOHA:TS-2034 xref: EFO:0000956 xref: EMAPA:35580 xref: EV:0100159 xref: FMA:54326 xref: GAID:1320 xref: galen:Nail xref: MA:0002703 xref: MAT:0000158 xref: MESH:D009262 xref: MIAA:0000158 xref: NCIT:C33156 xref: SCTID:72651009 xref: UMLS:C0027342 {source="ncithesaurus:Nail"} xref: VHOG:0001361 xref: Wikipedia:Nail_(anatomy) is_a: UBERON:0009564 ! distal limb integumentary appendage property_value: curator_notes "Use this class for both the nails of primates and the homologous claws of mammals such as mouse." xsd:string property_value: taxon_notes "A primate's nail consists of the unguis alone; the subunguis has disappeared" xsd:string [Term] id: UBERON:0001706 name: nasal septum def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum] subset: pheno_slim subset: uberon_slim synonym: "septal cartilage" RELATED [Wikipedia:Nasal_septum] synonym: "septum mobile nasi" RELATED [Wikipedia:Nasal_septum] synonym: "septum nasi" RELATED OMO:0003011 [Wikipedia:Nasal_septum] synonym: "septum of the nose" RELATED [Wikipedia:Nasal_septum] xref: AAO:0000559 xref: AAO:0010135 xref: EHDAA2:0001234 xref: EHDAA2:0004104 xref: EHDAA:6809 xref: EMAPA:17608 xref: FMA:54375 xref: GAID:115 xref: MA:0000285 xref: MESH:D009300 xref: NCIT:C33160 xref: SCTID:181197004 xref: UMLS:C0027432 {source="ncithesaurus:Nasal_Septum"} xref: VHOG:0000017 xref: Wikipedia:Nasal_septum is_a: UBERON:0003037 ! septum relationship: develops_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png" xsd:anyURI property_value: editor_note "We follow AAO in making this part of the nasal skeleton" xsd:string property_value: external_definition "A median dividing wall, sagittally directed, which divides the nasal cavity into the right and the left nasal fossae. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000017", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Medial vertical wall between nasal capsules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010135", ontology="AAO", source="AAO:EJS"} property_value: external_definition "Medial, vertical plate that separates the nasal capsules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000559", ontology="AAO", source="AAO:LAP"} property_value: homology_notes "Whatever the common ancestor of the lamprey and gnathostomes may have looked like, it most likely possessed a neural-crest-derived premandibular ectomesenchyme closely associated with the NHP. Invention of the jaw subsequently required a space for the nasal septum and maxillary process to develop, which might have been provided by subdivision of the NHP into the nasal placode and the hypophysis (diplorhiny, the state of bilaterally separated nasal openings, would also have been a prerequisite for this).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000017", ontology="VHOG", source="DOI:10.1098/rstb.2001.0976 Kuratani S, Nobusada Y, Horigome N, Shigetani Y, Embryology of the lamprey and evolution of the vertebrate jaw: insights from molecular and developmental perspectives. Philosophical transactions of the Royal Society of London (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001707 name: nasal cavity def: "An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cavitas nasalis" RELATED [BTO:0002096] synonym: "cavitas nasi" RELATED OMO:0003011 [BTO:0002096, Wikipedia:Nasal_cavity] synonym: "cavity of nose" EXACT [] synonym: "cavity of olfactory apparatus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cavum nasi" RELATED OMO:0003011 [Wikipedia:Nasal_cavity] synonym: "nasal canal" EXACT [ZFA:0000130] synonym: "nasal conduit space" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity] synonym: "nasal pit" RELATED [] synonym: "olfactory cavity" RELATED [] synonym: "olfactory chamber" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory chamber cavity" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130] xref: AAO:0000314 xref: BTO:0002096 xref: EHDAA2:0001226 xref: EHDAA:6801 xref: EMAPA:17604 xref: FMA:54378 xref: GAID:350 xref: MA:0000284 xref: MESH:D009296 xref: NCIT:C12424 xref: SCTID:263481003 xref: TAO:0000130 xref: UMLS:C0027423 {source="ncithesaurus:Nasal_Cavity"} xref: VHOG:0000271 xref: Wikipedia:Nasal_cavity xref: ZFA:0000130 is_a: UBERON:0002553 ! anatomical cavity relationship: develops_from UBERON:0005870 ! olfactory pit relationship: part_of UBERON:0015788 {source="cjm"} ! olfactory apparatus chamber property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg" xsd:anyURI property_value: editor_note "define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong." xsd:string property_value: external_definition "a large air filled space above and behind the nose in the middle of the face[WP][Wikipedia:Nasal_cavity]." xsd:string {source="Wikipedia:Nasal_cavity"} property_value: external_definition "Saclike space internal to the nasal capsule lined by respiratory and sensory epithelium and glandular tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000314", ontology="AAO", source="AAO:LAP"} property_value: homology_notes "Despite significant modification to the nasal cavity within Archosauria and its extreme hypertrophy and supraorbital development in Lambeosaurinae, the neural olfactory system and the olfactory region of the nasal cavity proper retain their plesiomorphic positions and associations, suggesting that this system is highly conserved in vertebrate evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000271", ontology="VHOG", source="DOI:10.1666/0094-8373(2006)032[0109:NCHACC]2.0.CO;2 Evans DC, Nasal cavity homologies and cranial crest function in lambeosaurine dinosaurs. Paleobiology (2006)", source="http://bgee.unil.ch/"} property_value: taxon_notes "in humans, the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures" xsd:string {source="HP"} [Term] id: UBERON:0001708 name: jaw skeleton def: "Subdivision of skeleton which includes upper and lower jaw skeletons." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Jaw] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior splanchnocranium" RELATED [] synonym: "jaw" EXACT [MA:0001905] synonym: "jaw cartilage" EXACT [ZFA:0001227] synonym: "jaws" RELATED [] synonym: "mandibular arch" RELATED [TAO:0001227] synonym: "mandibular arch skeleton" EXACT [ZFA:0001227] synonym: "oral jaw skeleton" RELATED [] synonym: "pharyngeal arch 1 skeleton" RELATED [] synonym: "visceral arch 1" RELATED [] xref: AAO:0000988 xref: BTO:0001749 xref: EMAPA:35455 xref: FMA:54396 xref: GAID:214 xref: galen:Jaw xref: MA:0001905 xref: MESH:D007568 xref: NCIT:C48821 xref: SCTID:181811001 xref: TAO:0001227 xref: UMLS:C0022359 {source="ncithesaurus:Jaw"} xref: Wikipedia:Jaw xref: ZFA:0001227 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0011156 {source="cjm"} ! facial skeleton relationship: part_of UBERON:0011595 ! jaw region property_value: development_notes "There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983)." xsd:string property_value: editor_note "TODO - move ZFA:0001227 (it is the entire jaw skeleton)." xsd:string property_value: external_definition "Skeletal and cartilage elements of the first pharyngeal arch.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001227", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA (and has teeth as parts). It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. TODO - follow EHDAA2 model. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001709 name: upper jaw region def: "Subdivision of head that consists of the upper jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Upper_jaw] comment: See notes for jaw w.r.t skeletal element vs subdivision of head. subset: uberon_slim subset: vertebrate_core synonym: "alveolodental arch of bimaxilla" RELATED [FMA:59399] synonym: "dorsal mandibular arch" RELATED [] synonym: "dorsal pharyngeal arch 1" RELATED INCONSISTENT [] synonym: "maxillary part of mouth" EXACT [FMA:59399] synonym: "maxillary part of mouth proper" RELATED [FMA:59399] synonym: "palatoquadrate arch" RELATED INCONSISTENT [] synonym: "upper pharyngeal jaws" RELATED [] xref: AAO:0000620 xref: EHDAA2:0002118 xref: EHDAA2:0004607 xref: EHDAA:8025 xref: EMAPA:17924 xref: FMA:59399 xref: ncithesaurus:Upper_Jaw xref: SCTID:362636001 xref: VHOG:0000454 xref: Wikipedia:Upper_jaw is_a: UBERON:0000475 ! organism subdivision relationship: mutually_spatially_disjoint_with UBERON:0001710 ! lower jaw region relationship: part_of UBERON:0004089 ! midface relationship: part_of UBERON:0011595 ! jaw region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png" xsd:anyURI property_value: external_definition "Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000620", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "Note isa/partof difference MA/FMA" xsd:string {external_ontology="MA"} property_value: homology_notes "Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000454", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001710 name: lower jaw region def: "Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [Wikipedia:Lower_jaw] comment: See notes for jaw w.r.t skeletal element vs subdivision of head subset: efo_slim subset: uberon_slim subset: vertebrate_core synonym: "lower part of mouth" RELATED [] synonym: "mandibular part of mouth" EXACT [FMA:59398] synonym: "mandibular series" RELATED [] xref: AAO:0000272 xref: EFO:0003660 xref: EHDAA2:0001018 xref: EHDAA:7995 xref: EMAPA:17906 xref: FMA:59398 xref: MESH:D008334 xref: ncithesaurus:Lower_Jaw xref: SCTID:362637005 xref: VHOG:0000453 xref: Wikipedia:Lower_jaw is_a: UBERON:0000475 ! organism subdivision relationship: develops_from UBERON:0005867 {source="Wikipedia:Mandibular_prominence"} ! mandibular prominence relationship: mutually_spatially_disjoint_with UBERON:0001709 ! upper jaw region relationship: part_of UBERON:0011595 ! jaw region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png" xsd:anyURI property_value: external_definition "Inferior mandibular arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000272", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "Note isa/partof difference MA/FMA" xsd:string {external_ontology="MA"} property_value: homology_notes "Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000453", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001711 name: eyelid def: "A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "blephara" RELATED OMO:0003004 [] synonym: "blepharon" EXACT [] synonym: "eye lid" EXACT [] synonym: "palpebra" EXACT [] synonym: "palpebrae" RELATED OMO:0003004 [] xref: BTO:0002241 xref: EHDAA2:0000487 xref: EHDAA:9037 xref: EMAPA:17829 xref: EV:0100338 xref: FMA:54437 xref: GAID:72 xref: MA:0000268 xref: MESH:D005143 xref: NCIT:C12713 xref: SCTID:265782007 xref: UMLS:C0015426 {source="ncithesaurus:Eyelid"} xref: VHOG:0000016 xref: Wikipedia:Eyelid is_a: UBERON:0000064 ! organ part relationship: fma_set_term FMA:75178 relationship: part_of UBERON:0000019 {source="multiple"} ! camera-type eye property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg" xsd:anyURI property_value: external_ontology_notes "Consider adding 'eye surface', like MA" xsd:string {external_ontology="MA"} property_value: external_ontology_notes "FMA divides this into skin, fascia, conjunctiva" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "blepharic" xsd:string property_value: has_relational_adjective "palpebral" xsd:string property_value: taxon_notes "In humans the upper and lower eyelid consists of the following layers, starting anteriorly: (1) skin, (2) a layer of subcutaneous connective tissue, (3) a layer of striated muscle fibres of the orbicularis muscle, (4) a layer of submuscular connective tissue, (5) a fibrous layer, including the tarsal plates, (6) a layer of smooth muscle, (7) the palpebral conjunctiva." xsd:string [Term] id: UBERON:0001712 name: upper eyelid subset: pheno_slim subset: uberon_slim synonym: "palpebra superior" EXACT OMO:0003011 [FMA:54439, FMA:TA] synonym: "superior eyelid" EXACT [] xref: EHDAA2:0002115 xref: EHDAA:9047 xref: EMAPA:17834 xref: FMA:54439 xref: MA:0001267 xref: NCIT:C49581 xref: SCTID:244499008 xref: UMLS:C0585636 {source="ncithesaurus:Upper_Eyelid"} xref: VHOG:0000389 is_a: UBERON:0001711 ! eyelid property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg" xsd:anyURI property_value: homology_notes "A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000389", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.431", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001713 name: lower eyelid subset: pheno_slim subset: uberon_slim synonym: "inferior eyelid" EXACT [] synonym: "palpebra inferior" EXACT OMO:0003011 [FMA:54442, FMA:TA] xref: AAO:0010349 xref: EHDAA2:0001015 xref: EHDAA:9041 xref: EMAPA:17831 xref: FMA:54442 xref: MA:0001263 xref: NCIT:C49580 xref: SCTID:362528002 xref: UMLS:C0229258 {source="ncithesaurus:Lower_Eyelid"} xref: VHOG:0000388 xref: XAO:0000007 is_a: UBERON:0001711 ! eyelid property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg" xsd:anyURI property_value: homology_notes "A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000388", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.431", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001714 name: cranial ganglion alt_id: UBERON:0003213 alt_id: UBERON:0026601 def: "The groups of nerve cell bodies associated with the twelve cranial nerves." [ISBN:0-683-40008-8, MGI:csmith, MP:0001081, PMID:9362461] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cranial ganglia" RELATED [] synonym: "cranial ganglion" EXACT [] synonym: "cranial ganglion part of peripheral nervous system" EXACT [BIRNLEX:2597] synonym: "cranial ganglion/nerve" EXACT [] synonym: "cranial nerve ganglion" EXACT [] synonym: "cranial neural ganglion" EXACT [] synonym: "cranial neural tree organ ganglion" EXACT [OBOL:automatic] synonym: "ganglion of cranial nerve" EXACT [FMA:54502] synonym: "ganglion of cranial neural tree organ" EXACT [OBOL:automatic] synonym: "head ganglion" RELATED [] synonym: "presumptive cranial ganglia" RELATED [ZFA:0000013] xref: BIRNLEX:2597 xref: BTO:0000106 xref: EFO:0000902 xref: EMAPA:16659 xref: FMA:54502 xref: MA:0000213 xref: MA:0000214 xref: MAT:0000200 xref: MIAA:0000200 xref: SCTID:244448001 xref: TAO:0000013 xref: VHOG:0000076 xref: Wikipedia:Cranial_nerve_ganglion xref: XAO:0000027 xref: ZFA:0000013 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0000033 ! head relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Ganglion which is located in the head.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000013", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001715 name: oculomotor nuclear complex def: "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534)." [BIRNLEX:1240] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "motor nucleus III" RELATED [] synonym: "nIII" RELATED [] synonym: "nucleus nervi oculomotorii" EXACT OMO:0003011 [FMA:54510, FMA:TA] synonym: "nucleus oculomotorius" RELATED OMO:0003011 [NeuroNames:492] synonym: "nucleus of oculomotor nerve" EXACT [FMA:54510] synonym: "nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of third cranial nerve" EXACT [FMA:54510] synonym: "oculomotor III nuclear complex" EXACT [] synonym: "oculomotor III nucleus" EXACT [MA:0001073] synonym: "oculomotor motornucleus" RELATED [XAO:0004389] synonym: "oculomotor nucleus" EXACT [FMA:54510] synonym: "OM" EXACT OMO:0003000 [XAO:0004389] synonym: "third cranial nerve nucleus" EXACT [FMA:54510] xref: BAMS:3 xref: BAMS:III xref: BIRNLEX:1240 xref: BM:MB-III xref: DHBA:12198 xref: EFO:0002468 xref: EHDAA2:0004211 xref: EMAPA:35605 xref: EV:0100250 xref: FMA:54510 xref: HBA:9030 xref: MA:0001073 xref: MBA:35 xref: MESH:D065838 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12897 xref: neuronames:492 {source="BIRNLEX:1240"} xref: SCTID:362457000 xref: TAO:0000553 xref: UMLS:C0228686 {source="ncithesaurus:Oculomotor_Nucleus", source="BIRNLEX:1240"} xref: VHOG:0001389 xref: Wikipedia:Nucleus_of_oculomotor_nerve xref: XAO:0004389 xref: ZFA:0000553 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: fma_set_term FMA:84019 relationship: mutually_spatially_disjoint_with UBERON:0001944 {source="ABA"} ! pretectal region relationship: mutually_spatially_disjoint_with UBERON:0001947 {source="ABA"} ! red nucleus relationship: mutually_spatially_disjoint_with UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: mutually_spatially_disjoint_with UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: mutually_spatially_disjoint_with UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: mutually_spatially_disjoint_with UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: mutually_spatially_disjoint_with UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: mutually_spatially_disjoint_with UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: mutually_spatially_disjoint_with UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: mutually_spatially_disjoint_with UBERON:0003040 {source="ABA"} ! central gray substance of midbrain relationship: part_of UBERON:0001943 {source="ZFA"} ! midbrain tegmentum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: external_definition "The nucleus of the oculomotor nerve (cranial nerve III)[XAO:0004389]." xsd:string {source="XAO:0004389"} [Term] id: UBERON:0001716 name: secondary palate def: "The part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences." [http://www.indiana.edu/~anat550/hnanim/face/face.html, Wikipedia:Secondary_palate] subset: pheno_slim subset: uberon_slim synonym: "definitive palate" EXACT [EMAPA:18948] synonym: "oral roof" EXACT [] synonym: "palate" BROAD SENSU [EMAPA:18948, GO:0060021, MA:0002476] synonym: "palatum" BROAD [] synonym: "palatum" RELATED OMO:0003011 [Wikipedia:Palate] synonym: "palatum definitivum" EXACT OMO:0003011 [Wikipedia:Secondary_palate] synonym: "palatum secundarium" EXACT OMO:0003011 [Wikipedia:Secondary_palate] synonym: "roof of mouth" RELATED [] xref: BTO:0001779 xref: EMAPA:18948 xref: FMA:54549 xref: GAID:152 xref: galen:Palate xref: MA:0002476 xref: MESH:D010159 xref: NCIT:C12229 xref: NCIT:C34292 xref: SCTID:181227004 xref: UMLS:C0700374 {source="ncithesaurus:Palate"} xref: UMLS:C1519217 {source="ncithesaurus:Secondary_Palate"} xref: Wikipedia:Secondary_palate is_a: UBERON:0007375 ! roof of mouth relationship: develops_from UBERON:0005619 {notes="fusion", source="http://www.indiana.edu/~anat550/hnanim/face/face.html"} ! secondary palatal shelf relationship: part_of UBERON:0001709 {source="EMAPA"} ! upper jaw region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Pig_snout_sagittal_cut.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg" xsd:anyURI property_value: function_notes "separates respiratory and oral passages" xsd:string property_value: has_relational_adjective "palatal" xsd:string property_value: taxon_notes "present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber." xsd:string [Term] id: UBERON:0001717 name: spinal nucleus of trigeminal nerve def: "Nucleus extending from the upper spinal cord through the pontine tegmentum that receives sensory inputs from the trigeminal nerve. It is continuous caudally with the dorsal gray matter of the spinal cord." [NLX:12995] subset: human_reference_atlas subset: uberon_slim synonym: "nucleus spinalis nervi trigemini" RELATED OMO:0003011 [Wikipedia:Spinal_trigeminal_nucleus] synonym: "spinal nucleus of cranial nerve v" EXACT [] synonym: "spinal nucleus of the trigeminal" RELATED [BAMS:SPV] synonym: "spinal trigeminal nucleus" EXACT [GO:0021741] synonym: "trigeminal nerve spinal tract nucleus" EXACT [] synonym: "trigeminal spinal nucleus" EXACT [] synonym: "trigeminal spinal sensory nucleus" RELATED [EMAPA:35885] synonym: "trigeminal v spinal sensory nucleus" EXACT [] xref: BAMS:Sp5 xref: BAMS:SPV xref: BM:VSp xref: DHBA:12572 xref: EMAPA:35885 xref: FMA:54565 xref: GAID:605 xref: HBA:9676 xref: MA:0001053 xref: MESH:D014279 xref: NCIT:C33188 xref: neuronames:1732 xref: NLX:12995 xref: SCTID:369033006 xref: UMLS:C0041000 {source="ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve"} xref: VHOG:0001357 xref: Wikipedia:Spinal_trigeminal_nucleus is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI [Term] id: UBERON:0001718 name: mesencephalic nucleus of trigeminal nerve def: "Elongated nucleus located in the midbrain tegmentum that receives proprioceptive input from both teh extraocular and the masticatory muscles. Contrary to the general rule, the cell bodies that give rise to these sensory fibers are located within the mesencephalic nucleus rather than in a peripheral ganglion. Some of the sensory fibers in the mesencephalic root give off collaterals to the trigeminal motor nucleus, thereby providing the anatomic basis for the monosynaptic jaw reflex. (Heimer, L. The Human Brain and Spinal Cord, 2nd ed. 1996, page 248)." [BIRNLEX:1010] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Me5" BROAD OMO:0003000 [BIRNLEX:1010, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalic nuclei of trigeminal nerves" RELATED OMO:0003004 [ZFA:0000312] synonym: "mesencephalic nucleus" BROAD [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "mesencephalic nucleus of the trigeminal" RELATED [BAMS:MEV] synonym: "mesencephalic nucleus of the trigeminal nerve" RELATED [NeuroNames:558] synonym: "mesencephalic trigeminal nucleus" EXACT [GO:0021739] synonym: "mesencephalic trigeminal V nucleus" EXACT [] synonym: "midbrain trigeminal nucleus" RELATED [NeuroNames:558] synonym: "nucleus mesencephalicus nervi trigeminalis" RELATED OMO:0003011 [NeuroNames:558] synonym: "nucleus mesencephalicus nervi trigemini" RELATED OMO:0003011 [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "nucleus of mesencephalic root of v" EXACT [] synonym: "nucleus tractus mesencephalici nervi trigemini" RELATED OMO:0003011 [NeuroNames:558] synonym: "nucleus tractus mesencephalicus nervi trigemini" RELATED OMO:0003011 [NeuroNames:558] synonym: "trigeminal mesencephalic nucleus" EXACT [] synonym: "trigeminal nerve mesencepahlic nucleus" EXACT [] synonym: "trigeminal V mesencephalic nucleus" EXACT [MA:0001057] xref: BAMS:Me5 xref: BAMS:MEV xref: BIRNLEX:1010 xref: BM:Pons-5ME xref: DHBA:12208 xref: EMAPA:35881 xref: EV:0100252 xref: FMA:54568 xref: HBA:9205 xref: MA:0001057 xref: MBA:460 xref: neuronames:558 {source="BIRNLEX:1010"} xref: SCTID:369032001 xref: TAO:0000312 xref: UMLS:C0228702 {source="BIRNLEX:1010"} xref: VHOG:0001354 xref: Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve xref: ZFA:0000312 is_a: UBERON:0004132 ! trigeminal sensory nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: development_notes "develops from NC in some species[https://github.com/obophenotype/uberon/wiki/The-neural-crest] Not of NC origin[DOI:10.1002/dvdy.1197]." xsd:string {source="PMID:11747082"} property_value: external_ontology_notes "part of midbrain tegmentum in NIF and MA. the neurons of the mesencephalic trigeminal nucleus are the only centrally located primary sensory neurons in amniotes; all others are extramedullary" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0001719 name: nucleus ambiguus def: "A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus] subset: uberon_slim synonym: "Amb" BROAD OMO:0003000 [BIRNLEX:2650, NIFSTD:NeuroNames_abbrevSource] synonym: "ambiguous nucleus" RELATED [NeuroNames:765] synonym: "ambiguus nucleus" EXACT [] synonym: "nucleus innominatus" RELATED OMO:0003011 [NeuroNames:765] xref: BAMS:AMB xref: BAMS:Amb xref: BIRNLEX:2650 xref: BM:Me-AMB xref: DHBA:12540 xref: EHDAA2:0004305 xref: EMAPA:35596 xref: EV:0100292 xref: FMA:54588 xref: HBA:9516 xref: MA:0001050 xref: MBA:135 xref: NCIT:C12835 xref: neuronames:765 {source="BIRNLEX:2650"} xref: SCTID:280184006 xref: UMLS:C0152400 {source="BIRNLEX:2650", source="ncithesaurus:Nucleus_Ambiguus"} xref: UMLS:C1281211 {source="BIRNLEX:2650"} xref: Wikipedia:Nucleus_ambiguus is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus relationship: immediate_transformation_of UBERON:0010126 {evidence="definitional"} ! future nucleus ambiguus relationship: mutually_spatially_disjoint_with UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: mutually_spatially_disjoint_with UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: mutually_spatially_disjoint_with UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: mutually_spatially_disjoint_with UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: mutually_spatially_disjoint_with UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: mutually_spatially_disjoint_with UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: mutually_spatially_disjoint_with UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: mutually_spatially_disjoint_with UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: mutually_spatially_disjoint_with UBERON:0002877 {source="ABA"} ! parasolitary nucleus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png" xsd:anyURI [Term] id: UBERON:0001720 name: cochlear nucleus def: "Any of the nuclei of the cochlear nuclear complex." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cochlear nucleus of acoustic nerve" EXACT [] synonym: "cochlear nucleus of eighth cranial nerve" EXACT [] synonym: "cochlear VIII nucleus" EXACT [MA:0001012] synonym: "nucleus of cochlear nerve" EXACT [] synonym: "statoacoustic (VIII) nucleus" EXACT [] synonym: "vestibulocochlear nucleus" RELATED [] xref: EMAPA:35248 xref: FMA:54603 xref: GAID:601 xref: MA:0001012 xref: MESH:D017626 xref: NCIT:C12837 xref: SCTID:362463009 xref: TAO:0002243 xref: Wikipedia:Cochlear_nucleus xref: ZFA:0001638 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002610 ! cochlear nuclear complex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png" xsd:anyURI [Term] id: UBERON:0001721 name: inferior vestibular nucleus def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus] subset: uberon_slim synonym: "descending vestibular nucleus" EXACT [FMA:54608] synonym: "nucleus vestibularis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_vestibular_nucleus] synonym: "spinal vestibular nucleus" EXACT [FMA:54608] xref: BAMS:IVe xref: BAMS:SPIV xref: BAMS:SpVe xref: BAMS:SPVN xref: BM:Me-VS-VSI xref: BTO:0004369 xref: EMAPA:35797 xref: EV:0100258 xref: FMA:54608 xref: HBA:9702 xref: MA:0001054 xref: MBA:225 xref: NCIT:C33591 xref: neuronames:718 xref: SCTID:280175006 xref: UMLS:C0175498 {source="ncithesaurus:Spinal_Vestibular_Nucleus"} xref: Wikipedia:Inferior_vestibular_nucleus is_a: UBERON:0007228 ! vestibular nucleus relationship: mutually_spatially_disjoint_with UBERON:0001722 {source="ABA"} ! medial vestibular nucleus relationship: mutually_spatially_disjoint_with UBERON:0007227 {source="ABA"} ! superior vestibular nucleus relationship: mutually_spatially_disjoint_with UBERON:0007230 {source="ABA"} ! lateral vestibular nucleus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png" xsd:anyURI [Term] id: UBERON:0001722 name: medial vestibular nucleus def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus] subset: uberon_slim synonym: "chief vestibular nucleus" EXACT [FMA:54611] synonym: "dorsal vestibular nucleus" EXACT [FMA:54611] synonym: "medial nucleus" RELATED [Wikipedia:Medial_vestibular_nucleus] synonym: "nucleus of Schwalbe" EXACT [FMA:54611] synonym: "nucleus triangularis" EXACT OMO:0003011 [FMA:54611, FMA:TA] synonym: "nucleus vestibularis medialis" RELATED OMO:0003011 [Wikipedia:Medial_vestibular_nucleus] synonym: "principal vestibular nucleus" EXACT [FMA:54611] synonym: "Schwalbe's nucleus" EXACT [FMA:54611] synonym: "triangular nucleus" EXACT [FMA:54611] xref: BAMS:MV xref: BAMS:MVe xref: BAMS:MVN xref: BAMS:VMN xref: BM:Me-VS-VSM xref: BTO:0004371 xref: DHBA:12581 xref: EMAPA:35554 xref: FMA:54611 xref: HBA:9700 xref: MA:0001048 xref: MBA:202 xref: NCIT:C33069 xref: neuronames:717 xref: PBA:10125 xref: SCTID:280174005 xref: UMLS:C0036385 {source="ncithesaurus:Medial_Vestibular_Nucleus"} xref: Wikipedia:Medial_vestibular_nucleus is_a: UBERON:0007228 ! vestibular nucleus relationship: mutually_spatially_disjoint_with UBERON:0001721 {source="ABA"} ! inferior vestibular nucleus relationship: mutually_spatially_disjoint_with UBERON:0007227 {source="ABA"} ! superior vestibular nucleus relationship: mutually_spatially_disjoint_with UBERON:0007230 {source="ABA"} ! lateral vestibular nucleus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg" xsd:anyURI [Term] id: UBERON:0001723 name: tongue def: "A muscular organ in the floor of the mouth." [FEED:rd, https://github.com/obophenotype/uberon/issues/256] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "glossus" RELATED [Wikipedia:Tongue] xref: AAO:0010360 xref: BTO:0001385 xref: CALOHA:TS-1050 xref: EFO:0000833 xref: EHDAA2:0002062 xref: EHDAA:9144 xref: EMAPA:17185 xref: EV:0100058 xref: FMA:54640 xref: GAID:816 xref: MA:0000347 xref: MAT:0000040 xref: MESH:D014059 xref: MIAA:0000040 xref: NCIT:C12422 xref: SCTID:181226008 xref: TAO:0005333 xref: UMLS:C0040408 {source="ncithesaurus:Tongue"} xref: VHOG:0000419 xref: Wikipedia:Tongue xref: XAO:0000446 xref: ZFA:0005333 is_a: UBERON:0000020 {source="GO"} ! sense organ is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0008814 ! pharyngeal arch system relationship: immediate_transformation_of UBERON:0010056 {evidence="definitional"} ! future tongue relationship: part_of UBERON:0000165 {source="BTO", source="EHDAA2", source="FMA", source="ZFA"} ! mouth relationship: part_of UBERON:0001033 {source="MA"} ! gustatory system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg" xsd:anyURI property_value: development_notes "The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions" xsd:string property_value: editor_note "in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence." xsd:string property_value: external_definition "A mobile mass of muscular tissue that is covered with mucous membrane, occupies much of the cavity of the mouth, forms part of its floor, bears the organ of taste, and assists in chewing and swallowing. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000419", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/tongue"} property_value: external_definition "Muscular organ in the floor of the mouth.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_definition "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO][GO:0043586]." xsd:string {source="GO:0043586"} property_value: has_relational_adjective "glossal" xsd:string property_value: has_relational_adjective "lingual" xsd:string property_value: homology_notes "Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000419", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2002.00073.x Iwasaki S, Evolution of the structure and function of the vertebrate tongue. J Anat (2002)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods" xsd:string [Term] id: UBERON:0001724 name: sphenoidal sinus def: "One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [MESH:A04.531.621.827, Wikipedia:Sphenoidal_sinus] subset: pheno_slim subset: uberon_slim synonym: "sinus sphenoidalis" RELATED OMO:0003011 [Wikipedia:Sphenoidal_sinus] synonym: "sphenoid sinus" EXACT [] xref: FMA:54683 xref: GAID:359 xref: MA:0001795 xref: MESH:D013101 xref: NCIT:C12278 xref: SCTID:181207000 xref: UMLS:C0037885 {source="ncithesaurus:Sphenoid_Sinus"} xref: Wikipedia:Sphenoidal_sinus is_a: UBERON:0001825 ! paranasal sinus relationship: part_of UBERON:0009639 ! body of sphenoid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png" xsd:anyURI [Term] id: UBERON:0001725 name: cranial synchondrosis def: "The cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514] xref: EMAPA:35264 xref: FMA:54816 xref: MA:0001502 xref: SCTID:314228003 is_a: UBERON:0002215 {source="FMA"} ! synchondrosis relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0001726 name: papilla of tongue subset: pheno_slim synonym: "lingual papilla" EXACT [] synonym: "tongue papilla" EXACT [] xref: BIRNLEX:4102 xref: EMAPA:32777 xref: FMA:54819 xref: MA:0001593 xref: NCIT:C33258 xref: SCTID:368728006 xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue", source="BIRNLEX:4102"} xref: UMLS:C1289183 {source="BIRNLEX:4102"} is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0005020 ! mucosa of tongue relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue [Term] id: UBERON:0001727 name: taste bud def: "A specialized receptor organ that is a collection of cells spanning the gustatory epithelium." [http://periowiki.wikispot.org/Taste_bud_histology] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caliculus gustatorius" RELATED OMO:0003004 [Wikipedia:Taste_bud] synonym: "taste buds" RELATED OMO:0003004 [Wikipedia:Taste_bud] synonym: "taste-bud" RELATED [Wikipedia:Taste_bud] synonym: "tastebud" EXACT [Wikipedia:Taste_bud] synonym: "tastebuds" RELATED OMO:0003004 [Wikipedia:Taste_bud] xref: AAO:0010573 xref: BIRNLEX:4101 xref: BTO:0000989 xref: CALOHA:TS-1015 xref: EMAPA:35850 xref: FMA:54825 xref: GAID:815 xref: http://uri.neuinfo.org/nif/nifstd/nifext_14 xref: MA:0001591 xref: MESH:D013650 xref: NCIT:C96518 xref: SCTID:362099006 xref: TAO:0001074 xref: UMLS:C0039337 {source="ncithesaurus:Taste_Bud", source="BIRNLEX:4101"} xref: VHOG:0000130 xref: Wikipedia:Taste_bud xref: XAO:0000445 xref: ZFA:0001074 is_a: UBERON:0003212 ! gustatory organ is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0007690 {source="http://dev.biologists.org/content/128/22/4573.full"} ! early pharyngeal endoderm relationship: mutually_spatially_disjoint_with UBERON:0002467 {source="http://periowiki.wikispot.org/Taste_bud_histology"} ! filiform papilla relationship: part_of UBERON:0002926 {source="NIF"} ! gustatory epithelium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png" xsd:anyURI property_value: development_notes "arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN:1607950324 (todo - request cell terms from CL)" xsd:string property_value: external_definition "A chemoreceptive organ.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010573", ontology="AAO", source="AAO:EJS"} property_value: external_definition "One of a number of receptor cell nests located in the epithelium of the papillae of the tongue and in the soft palate, epiglottis, and pharynx that mediate the sense of taste. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/taste+bud"} property_value: homology_notes "Experients in amphibia have shown that an intrinsic feature of the pharyngeal endoderm is its ability to generate taste buds and this capacity must have been acquired by the endoderm at the origin of the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans, saste buds may be found on the tongue, soft palatte, epiglottis and upper pharynx. In other species they may be found in more unusual places, such as the trunk, or on the barbels or fins of fish." xsd:string [Term] id: UBERON:0001728 name: nasopharynx def: "The section of the pharynx that lies above the soft palate." [MGI:cwg, MP:0002251] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "epipharynx" RELATED [Wikipedia:Pharynx] synonym: "nasal part of pharynx" EXACT [] synonym: "Nasenrachenraum" RELATED [BTO:0000662] synonym: "pars nasalis pharyngis" RELATED OMO:0003011 [Wikipedia:Nasopharynx] synonym: "rhinopharynx" EXACT [] xref: BTO:0000662 xref: CALOHA:TS-0663 xref: EHDAA2:0001239 xref: EHDAA:7086 xref: EMAPA:17670 xref: EV:0100066 xref: FMA:54878 xref: GAID:339 xref: MA:0000443 xref: MAT:0000447 xref: MESH:D009305 xref: NCIT:C12423 xref: SCTID:181200003 xref: UMLS:C0027442 {source="ncithesaurus:Nasopharynx"} xref: VHOG:0000375 xref: Wikipedia:Nasopharynx is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0001557 ! upper respiratory tract relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg" xsd:anyURI property_value: external_definition "The uppermost of the three regions of the throat (pharynx), situated behind the nasal cavity and extending from the posterior nares to the level above the soft palate. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000375", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/nasopharynx"} property_value: has_relational_adjective "nasopharyngeal" xsd:string property_value: taxon_notes "In humans - in front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane" xsd:string [Term] id: UBERON:0001729 name: oropharynx def: "The portion of the pharynx that lies between the soft palate and the upper edge of the epiglottis." [MGI:cwg, MP:0002252] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "mesopharynx" RELATED [Wikipedia:Pharynx] synonym: "oral part of pharynx" EXACT [] synonym: "pars oralis pharyngis" RELATED OMO:0003011 [Wikipedia:Oropharynx] xref: BTO:0005257 xref: CALOHA:TS-0718 xref: EFO:0001976 xref: EHDAA2:0004082 xref: EMAPA:25094 xref: EV:0100067 xref: FMA:54879 xref: GAID:340 xref: MA:0000351 xref: MAT:0000446 xref: MESH:D009960 xref: NCIT:C12762 xref: SCTID:263376008 xref: UMLS:C0521367 {source="ncithesaurus:Oropharynx"} xref: VHOG:0000457 xref: VSAO:0000034 xref: Wikipedia:Oropharynx xref: XAO:0004048 is_a: UBERON:0013522 ! subdivision of tube relationship: develops_from UBERON:0010023 {source="ISBN:0073040584-table13.1"} ! dorsal part of pharyngeal pouch 2 relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg" xsd:anyURI property_value: external_definition "One of the three anatomic divisions of the pharynx that lies posterior to the mouth and is continuous above with the nasopharynx and below with the laryngopharynx. It extends behind the mouth from the soft palate above to the level of the hyoid bone below and contains the palatine and lingual tonsils. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000457", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/oropharynx"} property_value: has_relational_adjective "oropharyngeal" xsd:string [Term] id: UBERON:0001730 name: extrinsic ligament of larynx synonym: "laryngeal extrinsic ligament" EXACT [] xref: EMAPA:37627 {source="MA:th"} xref: FMA:54921 xref: MA:0001756 xref: SCTID:279550004 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0001731 name: cavity of pharynx def: "An anatomical space that is enclosed by a pharynx." [OBOL:automatic] synonym: "cavitas pharyngealis" RELATED OMO:0003011 [] synonym: "cavitas pharyngis" RELATED [BTO:0002097] synonym: "lumen of pharynx" EXACT [] synonym: "pharyngeal cavity" EXACT [] xref: AAO:0010435 xref: BSA:0000113 xref: BTO:0002097 xref: EMAPA:18381 xref: FMA:54935 xref: SCTID:180543003 xref: XAO:0000105 is_a: UBERON:0000464 ! anatomical space relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut relationship: part_of UBERON:0006562 ! pharynx property_value: development_notes "TOODO check" xsd:string property_value: taxon_notes "See notes for pharynx - as a grouping class this is probably too bad. We exclude WBbt:0005790 (pharyngeal lumen) because of the developmental relationship" xsd:string [Term] id: UBERON:0001732 name: pharyngeal tonsil def: "The lymph tissue in the roof and posterior wall of the nasopharynx." [MGI:cwg, MP:0002384] subset: pheno_slim subset: uberon_slim synonym: "adenoid" EXACT [] synonym: "nasopharyngeal tonsil" EXACT [] synonym: "Rachenmandel" RELATED [BTO:0000777] synonym: "tonsil of Luschka" EXACT [] synonym: "tonsilla pharyngea" RELATED OMO:0003011 [Wikipedia:Pharyngeal_tonsil] synonym: "tonsilla pharyngealis" EXACT OMO:0003011 [FMA:54970, FMA:TA] xref: BTO:0000777 xref: EV:0100054 xref: FMA:54970 xref: GAID:1288 xref: MA:0000774 xref: MESH:D000234 xref: NCIT:C33318 xref: SCTID:181199001 xref: UMLS:C0001428 {source="ncithesaurus:Pharyngeal_Tonsil"} xref: Wikipedia:Pharyngeal_tonsil is_a: UBERON:0002372 ! tonsil is_a: UBERON:0012330 {source="cjm"} ! nasal-associated lymphoid tissue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray994-adenoid.png" xsd:anyURI [Term] id: UBERON:0001733 name: soft palate def: "The muscular, non-bony arch-shaped posterior portion of the palate extending from the posterior edge of the hard palate." [GO:0060023, http://www.feedexp.org, UBERON:cjm, Wikipedia:Soft_palate] subset: pheno_slim subset: uberon_slim synonym: "muscular palate" RELATED [Wikipedia:Soft_palate] synonym: "palatum molle" RELATED OMO:0003011 [Wikipedia:Soft_palate] synonym: "velum" RELATED [Wikipedia:Soft_palate] synonym: "velum palatinum" RELATED OMO:0003011 [Wikipedia:Soft_palate] xref: BTO:0005405 xref: EMAPA:18949 xref: FMA:55021 xref: GAID:1284 xref: MA:0002412 xref: MAT:0000039 xref: MESH:D010160 xref: MIAA:0000039 xref: NCIT:C12231 xref: SCTID:245784004 xref: UMLS:C0030219 {source="ncithesaurus:Soft_Palate"} xref: Wikipedia:Soft_palate is_a: UBERON:0034921 {source="FMA"} ! multi organ part structure relationship: never_in_taxon NCBITaxon:8782 {source="GOC:fmc"} relationship: part_of UBERON:0001716 {source="MA"} ! secondary palate property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg" xsd:anyURI property_value: external_definition "A muscular arch-shaped structure that is composed of the musculus uvuli and parts of tensor veli palatini, levator veli palatini, palatoglossus and palatopharyngeus and attaches to the hard palate and modulates the connections between the oral cavity and pharynx soft tissue arch .[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: has_relational_adjective "velar" xsd:string [Term] id: UBERON:0001734 name: palatine uvula def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers." [Wikipedia:Palatine_uvula] comment: seeAlso - bifid uvula and cleft palate subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "palatine uvula" EXACT [] synonym: "uvula" EXACT [FMA:55022] synonym: "uvula of palate" EXACT [] synonym: "uvula palatina" EXACT OMO:0003011 [FMA:55022, FMA:TA] synonym: "uvula palatina" RELATED OMO:0003011 [Wikipedia:Palatine_uvula] xref: BTO:0002204 xref: EFO:0001386 xref: FMA:55022 xref: GAID:1285 xref: MESH:D014609 xref: NCIT:C12232 xref: SCTID:362082005 xref: UMLS:C0042173 {source="ncithesaurus:Uvula"} xref: Wikipedia:Palatine_uvula is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001733 ! soft palate property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg" xsd:anyURI property_value: taxon_notes "In a study of eight mammals a small underdeveloped uvula was found only in baboons" xsd:string {source="PMID:1408233"} [Term] id: UBERON:0001735 name: tonsillar ring def: "The circular lymphoid tissue formed by the lingual, pharyngeal, and faucial tonsils." [MGI:cwg, MP:0002379] subset: pheno_slim subset: uberon_slim synonym: "anulus lymphoideus pharyngis" EXACT OMO:0003011 [FMA:55070, FMA:TA] synonym: "oropharyngeal lymphoid tissue" EXACT [] synonym: "pharyngeal lymphatic ring" EXACT [] synonym: "pharyngeal lymphoid ring" EXACT [] synonym: "Waldeyer's ring" EXACT [] synonym: "Waldeyer's tonsillar ring" EXACT [] xref: FMA:55070 xref: MA:0000752 xref: NCIT:C73468 xref: SCTID:56411004 xref: UMLS:C0459892 {source="ncithesaurus:Waldeyers_Tonsillar_Ring"} xref: Wikipedia:Waldeyer's_ring is_a: UBERON:0001962 ! gut-associated lymphoid tissue relationship: part_of UBERON:0001042 ! chordate pharynx relationship: seeAlso FMA:79771 [Term] id: UBERON:0001736 name: submandibular gland def: "Either of the paired compound tubuloalveolar (aka tubuloacinar) major salivary glands composed of both serous and mucous secretory cells and situated beneath the mandible." [DOI:10.1111/j.1432-0436.2006.00088.x, MGI:anna] comment: lobular, sexually dimorphic in mouse subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "glandula submandibularis" RELATED OMO:0003011 [Wikipedia:Submandibular_gland] synonym: "mandibular gland" EXACT SENSU [http://www.avdc.org/Nomenclature.pdf] synonym: "mandibular salivary gland" EXACT SENSU [http://www.avdc.org/Nomenclature.pdf] synonym: "maxillary gland" RELATED [] synonym: "submandibular salivary gland" EXACT [] synonym: "submaxillary gland" RELATED [] xref: BTO:0001316 xref: CALOHA:TS-0988 xref: EFO:0001387 xref: EMAPA:18812 xref: EV:0100061 xref: FMA:55093 xref: GAID:942 xref: MA:0001589 xref: MESH:D013363 xref: NCIT:C12233 xref: SCTID:181235001 xref: UMLS:C0038556 {source="ncithesaurus:Submandibular_Gland"} xref: VHOG:0000364 xref: Wikipedia:Submandibular_gland is_a: UBERON:0001829 ! major salivary gland relationship: develops_from UBERON:0006298 ! submandibular gland primordium relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg" xsd:anyURI property_value: development_notes "The submandibular is the first major salivary gland to develop in the embryo, followed by the neighbouring sublingual and then the parotid.[PMID:17336109]" xsd:string property_value: external_definition "Either of two major salivary glands situated in the neck near the lower edge of each side of the mandible and emptying into the submandibular duct. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000364", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/submandibular+gland"} property_value: homology_notes "The most common oral glands in mammals are the salivary glands. There are usually three primary pairs of salivary glands, named for their approximate positions: mandibular (submandibular or submaxillary), sublingual, and parotid.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000364", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.525", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]" xsd:string property_value: taxon_notes "in mice, submandibular gland development initiates as a thickening of the oral epithelium; around E12 an initial (single) epithelial bud on a stalk grows into a condensing neural crest-derived mesenchyme; clefts in the epithelium result in 3-5 epithelial buds at E13.5, and branching morphogenesis occurs with continued proliferation, successive rounds of cleft formation, duct elongation, and duct lumen formation, so that by E14 the gland is highly branched (multi-lobed); functional differentiation, with the appearance of proacinar cells and secretory products begins after E15 and continues to birth; acinar differentiation continues postnatally with final differentiation of the granular convoluted tubules at puberty[MGI:anna]" xsd:string property_value: taxon_notes "In mouse, multilobed and lobulated, on the ventral midline of the neck" xsd:string {source="ISBN:0123813611"} property_value: terminology_notes "The term submandibular as used in humans, is incorrect due the difference in topography of these structures[http://www.avdc.org]" xsd:string [Term] id: UBERON:0001737 name: larynx def: "A continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Larynx] subset: efo_slim subset: pheno_slim subset: uberon_slim xref: AAO:0000268 xref: BTO:0001208 xref: CALOHA:TS-0532 xref: EFO:0000838 xref: EHDAA2:0004063 xref: EMAPA:18333 xref: EV:0100039 xref: FMA:55097 xref: GAID:108 xref: galen:Larynx xref: MA:0000414 xref: MAT:0000187 xref: MESH:D007830 xref: MIAA:0000187 xref: NCIT:C12420 xref: SCTID:181212004 xref: UMLS:C0023078 {source="ncithesaurus:Larynx"} xref: VHOG:0001279 xref: Wikipedia:Larynx xref: XAO:0003081 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "An anatomical cluster consisting of the epiglottus, the arytenoid cartilages, the thyroid cartilage, the cricoid cartilage and the muscles, membranes, and ligaments connecting them, and also of the mucosal covering these structures.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_definition "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000268", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "laryngeal" xsd:string property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001279", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001738 name: thyroid cartilage def: "The largest of the laryngeal cartilages." [ISBN:0-397-51047-0, MGI:cwg, MP:0002260] subset: pheno_slim subset: uberon_slim synonym: "cartilago thyroidea" RELATED OMO:0003011 [Wikipedia:Thyroid_cartilage] synonym: "laryngeal prominence" RELATED [Wikipedia:Thyroid_cartilage] synonym: "pomus" RELATED [Wikipedia:Thyroid_cartilage] synonym: "pomus adamus" RELATED [Wikipedia:Thyroid_cartilage] xref: BTO:0003655 xref: EHDAA2:0002030 xref: EHDAA:9395 xref: EMAPA:18698 xref: FMA:55099 xref: GAID:112 xref: MA:0001764 xref: MESH:D013957 xref: NCIT:C33780 xref: SCTID:263483000 xref: UMLS:C0040126 {source="ncithesaurus:Thyroid_Cartilage"} xref: VHOG:0001365 xref: Wikipedia:Thyroid_cartilage is_a: UBERON:0001739 ! laryngeal cartilage relationship: develops_from UBERON:0010219 {source="EHDAA2"} ! thyroid pre-cartilage condensation property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "The largest cartilage of the larynx, having two broad processes that join anteriorly to form the Adam's apple. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/thyroid+cartilage"} property_value: homology_notes "[In anura] a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) [In mammals] Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001739 name: laryngeal cartilage def: "The cartilaginous structures that support the larynx." [MP:0002256] subset: pheno_slim synonym: "cartilage of larynx" EXACT [FMA:55108] synonym: "cartilagines laryngeales" EXACT OMO:0003004 [] synonym: "larynx cartilage" EXACT [VHOG:0001550] xref: BTO:0003660 xref: EHDAA:8157 xref: EMAPA:18697 xref: FMA:55108 xref: GAID:107 xref: MA:0001758 xref: MESH:D007817 xref: NCIT:C12281 xref: SCTID:263482005 xref: UMLS:C0023050 {source="ncithesaurus:Laryngeal_Cartilage"} xref: VHOG:0001550 is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:0010213 ! laryngeal pre-cartilage condensation relationship: fma_set_term FMA:64159 relationship: part_of UBERON:0010212 ! laryngeal apparatus property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001550", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001740 name: arytenoid cartilage def: "The paired triangular laryngeal cartilages located postlaterally at the level of the thyroid cartilage." [ISBN:0-397-51047-0, MGI:cwg, MP:0002257] subset: pheno_slim subset: uberon_slim synonym: "arytenoid" EXACT [EMAPA:18695] synonym: "arytenoids" RELATED [Wikipedia:Arytenoid_cartilage] synonym: "cartilagines arytenoidea" RELATED OMO:0003011 [Wikipedia:Arytenoid_cartilage] synonym: "cartilago arytaenoidea" RELATED [AAO:0000674] synonym: "cartilago arytenoidea" RELATED [] xref: AAO:0000674 xref: EMAPA:17977 xref: EMAPA:18695 xref: FMA:55109 xref: GAID:109 xref: MA:0001759 xref: MESH:D001193 xref: NCIT:C32148 xref: SCTID:264446005 xref: UMLS:C0003943 {source="ncithesaurus:Arytenoid_Cartilage"} xref: Wikipedia:Arytenoid_cartilage is_a: UBERON:0001739 ! laryngeal cartilage is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0010220 {source="cjm"} ! arytenoid pre-cartilage condensation property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "Paired, anteroposteriorly elongated cartilages that are associated with the vocal cords. These cartilages are medially separated and hemispherical, and their concave side faces ventromedially.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000674", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001741 name: corniculate cartilage def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilages] subset: uberon_slim synonym: "cartilage of Santorini" EXACT [] synonym: "cartilagines corniculata" EXACT OMO:0003011 [Wikipedia:Corniculate_cartilage] synonym: "Santorini's cartilage" EXACT [] xref: EMAPA:37484 {source="MA:th"} xref: FMA:55110 xref: MA:0001885 xref: NCIT:C32373 xref: SCTID:278989005 xref: UMLS:C0225556 {source="ncithesaurus:Corniculate_Cartilage"} xref: Wikipedia:Corniculate_cartilages is_a: UBERON:0001996 {source="MA"} ! elastic cartilage tissue is_a: UBERON:0003583 ! larynx connective tissue relationship: part_of UBERON:0008895 ! splanchnocranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI [Term] id: UBERON:0001742 name: epiglottic cartilage def: "The most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259] subset: uberon_slim xref: EMAPA:37522 {source="MA:th"} xref: FMA:55112 xref: MA:0001763 xref: MESH:D004825 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32526 xref: SCTID:278990001 xref: UMLS:C0458526 {source="ncithesaurus:Epiglottic_Cartilage"} is_a: UBERON:0001739 ! laryngeal cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000388 ! epiglottis property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_ontology_notes "laryngeal cartilage in MP" xsd:string {external_ontology="MP"} [Term] id: UBERON:0001743 name: ligament of larynx def: "A ligament that is part of a larynx and connexts the cartilages of the larynx." [http://education.yahoo.com/reference/gray/subjects/subject/236] synonym: "laryngeal ligament" EXACT [] synonym: "larynx ligament" EXACT [MA:0001755] xref: EMAPA:37626 {source="MA:th"} xref: FMA:55131 xref: MA:0001755 xref: NCIT:C32933 xref: SCTID:279508004 xref: UMLS:C0458519 {source="ncithesaurus:Laryngeal_Ligament"} is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001744 name: lymphoid tissue def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue] subset: pheno_slim subset: uberon_slim synonym: "lymphatic tissue" EXACT [] synonym: "lymphocytic tissue" EXACT [] xref: BTO:0000753 xref: CALOHA:TS-0584 xref: FMA:55220 xref: GAID:342 xref: galen:LymphoidTissue xref: MA:0002436 xref: MESH:D008221 xref: NCIT:C13049 xref: SCTID:181768009 xref: UMLS:C0024296 {source="ncithesaurus:Lymphoid_Tissue"} xref: Wikipedia:Lymphoid_tissue is_a: UBERON:0034769 {source="FMA"} ! lymphomyeloid tissue relationship: dubious_for_taxon NCBITaxon:7776 {notes="lampreys lack organized lymphoid tissue", source="NCBIBook:NBK27108"} relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0001745 name: secondary nodular lymphoid tissue def: "A lymphoid follicle that contains a germinal center." [CL:tm] subset: uberon_slim synonym: "peripheral lymphoid tissue" EXACT [] synonym: "secondary lymphoid nodule" EXACT [] synonym: "secondary lymphoid tissue" EXACT [] xref: FMA:55224 xref: GAID:946 is_a: UBERON:0000444 ! lymphoid follicle relationship: develops_from UBERON:0010422 ! primary nodular lymphoid tissue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/Keimzentrum.jpg" xsd:anyURI [Term] id: UBERON:0001746 name: capsule of thyroid gland synonym: "capsula fibrosa glandulae thyroideae" EXACT OMO:0003011 [FMA:55513, FMA:TA] synonym: "fibrous capsule of thyroid gland" EXACT [FMA:55513] synonym: "thyroid capsule" EXACT [] synonym: "thyroid gland capsule" EXACT [MA:0002675] xref: EMAPA:37767 {source="MA:th"} xref: FMA:55513 xref: MA:0002675 xref: NCIT:C33781 xref: SCTID:176859009 xref: UMLS:C0229575 {source="ncithesaurus:Thyroid_Gland_Capsule"} is_a: UBERON:0003893 ! capsule relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001747 name: parenchyma of thyroid gland def: "A parenchyma that is part of a thyroid follicle [Automatically generated definition]." [OBOL:automatic] synonym: "parenchyma glandulae thyroideae" RELATED [BTO:0004579] synonym: "parenchyma of thyroid" EXACT [OBOL:accepted] synonym: "parenchyma of thyroid follicle" EXACT [OBOL:automatic] synonym: "parenchyma of thyroid gland follicle" EXACT [OBOL:automatic] synonym: "thyroid follicle parenchyma" EXACT [OBOL:automatic] synonym: "thyroid gland follicle parenchyma" EXACT [OBOL:automatic] synonym: "thyroid gland parenchyma" EXACT [] synonym: "thyroid parenchyma" EXACT [OBOL:accepted] xref: BTO:0004579 xref: EMAPA:37769 {source="MA:th"} xref: FMA:55515 xref: MA:0000730 xref: SCTID:371402001 is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001748 name: capsule of parathyroid gland def: "The dense and irregular connective tissue capsule surrounding a parathyroid gland." [MGI:anna] subset: pheno_slim synonym: "parathyroid gland capsule" EXACT [] xref: EMAPA:35663 xref: FMA:55566 xref: MA:0002676 xref: NCIT:C33265 xref: UMLS:C0927176 {source="ncithesaurus:Parathyroid_Gland_Capsule"} is_a: UBERON:0003893 ! capsule relationship: part_of UBERON:0001132 {source="MA"} ! parathyroid gland [Term] id: UBERON:0001749 name: parenchyma of parathyroid gland def: "A parenchyma that is part of a parathyroid gland [Automatically generated definition]." [OBOL:automatic] synonym: "parathyroid gland parenchyma" EXACT [] synonym: "parathyroid parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of parathyroid" EXACT [OBOL:automatic] xref: EMAPA:35664 xref: FMA:55569 xref: MA:0002677 is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0001750 name: lacrimal apparatus def: "A network of orbital structures of the eye that secrete and drain tears from the surface of the eyeball into the nasal cavity; these parts include the lacrimal glands, lacrimal lake, lacrimal ducts, lacrimal canals, lacrimal sacs, nasolacrimal ducts, and lacrimal puncta." [MGI:anna] subset: pheno_slim subset: uberon_slim synonym: "apparatus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_apparatus] synonym: "lacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "lacrymal system" EXACT [MGI:anna] synonym: "nasolacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "nasolacrimal system" RELATED [HPO:pr] xref: EMAPA:35462 xref: FMA:55605 xref: GAID:901 xref: MA:0000274 xref: MESH:D007765 xref: NCIT:C32905 xref: UMLS:C0022903 {source="ncithesaurus:Lacrimal_Apparatus"} xref: Wikipedia:Lacrimal_apparatus is_a: UBERON:0000467 ! anatomical system relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region relationship: part_of UBERON:0035639 {source="HPO:pr"} ! ocular adnexa property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png" xsd:anyURI property_value: editor_note "TODO - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal" xsd:string property_value: external_ontology_notes "this is an eye appendage in ncit, along with eyelid and eyebrow. in MA, part of eye surface part_of eye" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0001751 name: dentine def: "Collagen-rich odontogenic tissue characteristic of teeth and tooth-like skeletal elements (e.g., odontodes); mature dentine is mineralized and develops from predentine tissue; often (but not always) tubular and acellular." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000069] comment: . subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "dentin" EXACT [MA:0002542, ZFA:0005143] synonym: "dentine of tooth" EXACT [] synonym: "predentin" NARROW [GO:0070468] xref: BTO:0003453 xref: EMAPA:35281 xref: FMA:55628 xref: GAID:1272 xref: MA:0002542 xref: MESH:D003804 xref: NCIT:C32453 xref: SCTID:362112004 xref: TAO:0005143 xref: UMLS:C0011429 {source="ncithesaurus:Dentin"} xref: VHOG:0001589 xref: VSAO:0000069 xref: Wikipedia:Dentin xref: XAO:0004051 xref: ZFA:0005143 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue is_a: UBERON:4000013 ! mineralized skeletal tissue relationship: transformation_of UBERON:0011587 {source="VSAO"} ! pre-dentine property_value: external_definition "Mineralized collagen containing substance that forms the tooth structure.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005143", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "dentinal" xsd:string property_value: homology_notes "Dentine is a bona fide vertebrate novelty, and dentine-secreting odontoblasts represent a cell type that is exclusively derived from the neural crest.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001589", ontology="VHOG", source="DOI:10.1111/j.1469-7580.2012.01495.x Hall BK, Gillis JA, Incremental evolution of the neural crest, neural crest cells and neural crest-derived skeletal tissues. J Anat (2012)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]" xsd:string [Term] id: UBERON:0001752 name: enamel def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel_organ, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "enamel of tooth" EXACT [] synonym: "enamel tissue" EXACT [VSAO:curator] synonym: "enameloid" RELATED [] synonym: "tooth enamel" EXACT [] xref: BTO:0001844 xref: CALOHA:TS-1057 xref: EMAPA:35303 xref: FMA:55629 xref: MA:0002543 xref: MESH:D003743 xref: NCIT:C32505 xref: SCTID:362113009 xref: UMLS:C0011350 {source="ncithesaurus:Enamel"} xref: VSAO:0000065 xref: Wikipedia:Enamel_organ xref: XAO:0004198 is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue is_a: UBERON:4000013 ! mineralized skeletal tissue relationship: develops_from UBERON:0011588 {source="VSAO"} ! pre-enamel relationship: never_in_taxon NCBITaxon:9359 {source="PMID:19730686"} relationship: never_in_taxon NCBITaxon:9816 {source="PMID:19730686"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Enamelorgan11-17-05.jpg" xsd:anyURI property_value: editor_note "current classification under substance of tooth may be turned into taxon GCI (e.g. sharks have enamel in dermal denticles)" xsd:string property_value: external_definition "Skeletal tissue that consists of an avascular, noncollagenous, hypermineralized matrix that is deposited by ameloblasts that are excluded from the matrix. Enamel develops from organic pre-enamel tissue that is replaced by a largely inorganic matrix.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000065", ontology="VSAO", source="PSPUB:0000170"} property_value: external_ontology_notes "part_of tooth enamel organ in MA" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001753 name: cementum def: "Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000062] subset: pheno_slim synonym: "bone of attachment" RELATED [VSAO:0000062] synonym: "cement" EXACT [FMA:55630] synonym: "cement of tooth" EXACT [] synonym: "cementum" EXACT [] synonym: "cementum of tooth" EXACT [] xref: BTO:0002525 xref: CALOHA:TS-2163 xref: EMAPA:35203 xref: FMA:55630 xref: MA:0002541 xref: MESH:D003739 xref: NCIT:C32276 xref: SCTID:362114003 xref: UMLS:C0011343 {source="ncithesaurus:Cementum"} xref: VSAO:0000062 xref: Wikipedia:Cementum xref: XAO:0004196 is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg" xsd:anyURI property_value: external_definition "Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000062", ontology="VSAO", source="PSPUB:0000170"} property_value: external_definition "Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA:55630]." xsd:string {source="FMA:55630"} property_value: taxon_notes "Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W]" xsd:string [Term] id: UBERON:0001754 name: dental pulp def: "The part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "dental pulp cell" RELATED [BTO:0000339] synonym: "pulp of tooth" EXACT [] synonym: "tooth pulp" EXACT [ZFA:0005141] xref: BTO:0000339 xref: CALOHA:TS-0195 xref: EMAPA:35274 xref: FMA:55631 xref: GAID:1270 xref: MA:0001599 xref: MESH:D003782 xref: NCIT:C32451 xref: SCTID:362110007 xref: TAO:0005141 xref: UMLS:C0011399 {source="ncithesaurus:Dental_Pulp"} xref: VHOG:0001469 xref: Wikipedia:Dental_pulp xref: ZFA:0005141 is_a: UBERON:0011825 {source="FMA"} ! loose connective tissue relationship: develops_from UBERON:0001763 {source="ZFA"} ! odontogenic papilla relationship: part_of UBERON:0001091 ! calcareous tooth property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg" xsd:anyURI property_value: external_definition "Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005141", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "The oral cavity of vertebrates is generally thought to arise as an ectodermal invagination. Consistent with this, oral teeth are proposed to arise exclusively from ectoderm, contributing to tooth enamel epithelium, and from neural crest derived mesenchyme, contributing to dentin and pulp (reference 1); Teeth and tooth-like structures, together named odontodes, are repeated organs thought to share a common evolutionary origin. These structures can be found in gnathostomes at different locations along the body: oral teeth in the jaws, teeth and denticles in the oral-pharyngeal cavity, and dermal denticles on elasmobranch skin (reference 2).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001469", ontology="VHOG", source="DOI:10.1038/nature07304 Soukup V, Epperlein HH, Horacek I, Cerny R, Dual epithelial origin of vertebrate oral teeth. Nature (2008), DOI:10.1186/1471-2148-11-307 The homology of odontodes in gnathostomes: insights from Dlx gene expression in the dogfish, Scyliorhinus canicula. BMC Evolutionary Biology (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001755 name: distal part of styloid process of temporal bone def: "A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]." [http://www.biology-online.org/dictionary/Stylohyal] subset: vertebrate_core synonym: "distal part of styloid process" EXACT [FMA:56472] synonym: "stylohyal" BROAD [FMA:56472] synonym: "stylohyal bone" RELATED [MFMO:0000053] xref: FMA:56472 xref: MFMO:0000053 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0003960 ! styloid process of temporal bone property_value: editor_note "TODO - check" xsd:string [Term] id: UBERON:0001756 name: middle ear def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear] subset: pheno_slim subset: uberon_slim synonym: "auris media" RELATED OMO:0003011 [BTO:0002099, Wikipedia:Middle_ear] xref: AAO:0011065 xref: BIRNLEX:1695 xref: BTO:0002099 xref: CALOHA:TS-2233 xref: EHDAA2:0001181 xref: EHDAA:5693 xref: EMAPA:17000 xref: EV:0100357 xref: FMA:56513 xref: GAID:165 xref: MA:0000253 xref: MAT:0000146 xref: MESH:D004432 xref: MIAA:0000146 xref: NCIT:C12274 xref: SCTID:181185000 xref: UMLS:C0013455 {source="ncithesaurus:Middle_Ear", source="BIRNLEX:1695"} xref: UMLS:C1268972 {source="BIRNLEX:1695"} xref: VHOG:0000312 xref: Wikipedia:Middle_ear xref: XAO:0000191 is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001690 ! ear property_value: external_definition "The intermediate portion of the ear which consists of a small air-filled and membrane-lined chamber. It is lodged in the temporal bone and continues with the nasopharynx through the Eustachian tube. It is separated from the external ear by the tympanic membrane and from the inner ear by the fenestrae. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000312", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000312", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001757 name: pinna def: "The part of the ear that projects from the head, connecting to the external acoustic meatus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pinna_(anatomy)] subset: pheno_slim subset: uberon_slim synonym: "auricle" EXACT [] synonym: "auricle of ear" EXACT [] synonym: "auricle of external ear" EXACT [] synonym: "auricula" EXACT [Wikipedia:Auricula] synonym: "auricula (auris externa)" EXACT [] synonym: "pinna of ear" EXACT [] synonym: "pinnae" RELATED OMO:0003004 [] xref: EHDAA2:0001467 xref: EMAPA:17589 xref: EV:0100355 xref: FMA:56580 xref: galen:Auricle xref: MA:0000259 xref: NCIT:C32165 xref: SCTID:421159007 xref: UMLS:C0928075 {source="ncithesaurus:Auricle"} xref: VHOG:0000460 xref: Wikipedia:Pinna_(anatomy) is_a: UBERON:0001444 ! subdivision of head relationship: develops_from UBERON:0006208 ! auditory hillocks relationship: part_of UBERON:0001691 ! external ear property_value: external_definition "The external expanded part of the ear characterized by a funnel-shaped structure through which the sound vibrations are received. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000460", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: function_notes "The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch)." xsd:string property_value: homology_notes "Mammals have a third type of tympanic ear. An external flap, the auricle or pinna, helps funnel sound waves down the external acoustic meatus to the tympanic membrane.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000460", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.420", source="http://bgee.unil.ch/"} property_value: taxon_notes "In various species, the pinna can also signal mood and radiate heat" xsd:string [Term] id: UBERON:0001758 name: periodontium def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium] subset: pheno_slim synonym: "paradentium" RELATED [MESH:A14.254.646] synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665] synonym: "periodontal membrane" RELATED [MA:0002467] synonym: "tooth supporting structure" RELATED [MESH:A14.254.646] xref: BTO:0001021 xref: CALOHA:TS-2380 xref: GAID:216 xref: MESH:D010519 xref: NCIT:C33304 xref: UMLS:C0031093 {source="ncithesaurus:Periodontium"} xref: Wikipedia:Periodontium is_a: UBERON:0000479 {source="cjm"} ! tissue relationship: part_of UBERON:0003672 {source="cjm"} ! dentition property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg" xsd:anyURI property_value: external_ontology_notes "FMA treats periodontium and periodontal ligament as the same" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001759 name: vagus nerve def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "10n" BROAD OMO:0003000 [BIRNLEX:801, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-X" RELATED [] synonym: "cranial nerve X" RELATED [] synonym: "nerve X" RELATED [NeuroNames:702] synonym: "nervus vagus" RELATED OMO:0003011 [BTO:0003472, Wikipedia:Vagus_nerve] synonym: "nervus vagus [x]" EXACT OMO:0003011 [FMA:5731, FMA:TA] synonym: "pneuomgastric nerve" RELATED [BTO:0003472] synonym: "tenth cranial nerve" EXACT [] synonym: "vagal nerve" RELATED [] synonym: "vagus" EXACT [] synonym: "vagus nerve [X]" EXACT [] synonym: "vagus nerve or its root" RELATED [BAMS:10n] synonym: "vagus nerve tree" EXACT [] synonym: "vagus X nerve" EXACT [MA:0001106] xref: AAO:0010475 xref: BAMS:10n xref: BAMS:Xn xref: BIRNLEX:801 xref: BTO:0003472 xref: EFO:0002549 xref: EMAPA:37797 {source="MA:th"} xref: FMA:5731 xref: GAID:721 xref: galen:VagusNerve xref: MA:0001106 xref: MBA:917 xref: MESH:D014630 xref: NCIT:C12812 xref: neuronames:702 {source="BIRNLEX:801"} xref: SCTID:362466001 xref: TAO:0000453 xref: UMLS:C0042276 {source="ncithesaurus:Vagus_Nerve", source="BIRNLEX:801"} xref: UMLS:C1305910 {source="BIRNLEX:801"} xref: VHOG:0000737 xref: Wikipedia:Vagus_nerve xref: XAO:0003097 xref: ZFA:0000453 is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001033 ! gustatory system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: external_definition "Nerve consisting of branchiomotor and visceral efferent fibers which branch and innervate the smooth muscles and glands of the heart, lungs, esophagus, and stomach as well as some throat muscles. Sensory fibers supply mucosa of the mouth and pharynx.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010475", ontology="AAO", source="AAO:EJS"} property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000737", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001760 name: frontal sinus def: "The frontal sinus occupies the dorsal part of the skull medial to the orbit. It overlaps cranial and nasal cavities and is often referred to as the conchofrontal sinus." [MURDOCH:753, Wikipedia:Frontal_sinus] subset: pheno_slim subset: uberon_slim synonym: "cavity of frontal bone" EXACT [FMA:57417] synonym: "sinus frontales" RELATED OMO:0003011 [Wikipedia:Frontal_sinus] xref: FMA:57417 xref: GAID:357 xref: MA:0001793 xref: MESH:D005626 xref: NCIT:C12277 xref: SCTID:181205008 xref: UMLS:C0016734 {source="ncithesaurus:Frontal_Sinus"} xref: Wikipedia:Frontal_sinus is_a: UBERON:0001825 {source="MA"} ! paranasal sinus property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg" xsd:anyURI property_value: taxon_notes "A unique feature in the horse is that the frontal sinus communicates with the caudal maxillary sinus via the frontomaxillary opening" xsd:string {source="MURDOCh"} [Term] id: UBERON:0001761 name: future foramen cecum def: "A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132]." [ISBN:0124020607, VHOG:0000826] subset: uberon_slim synonym: "foramen caecum" BROAD [MA:0000725] synonym: "foramen cecum" BROAD [] synonym: "future foramen caecum" BROAD [] synonym: "future foramen cecum of tongue" BROAD [] xref: EHDAA2:0000550 xref: EHDAA:2150 xref: EHDAA:2977 xref: EMAPA:17069 xref: VHOG:0000826 is_a: UBERON:0016566 {source="EHDAA2"} ! pit relationship: develops_from UBERON:0005665 {source="EHDAA2"} ! 3rd arch endoderm relationship: part_of UBERON:0003091 ! thyroid primordium [Term] id: UBERON:0001762 name: turbinate bone def: "The small curved bones that extends horizontally along the lateral wall of the nasal passage." [ISBN:0-683-40008-8, MP:0002244] subset: pheno_slim subset: uberon_slim synonym: "concha" RELATED [EMAPA:25093] synonym: "ossified nasal turbinal" EXACT [] synonym: "ossified nasal turbinate" EXACT [] synonym: "ossified turbinate" EXACT [] synonym: "turbinal bone" EXACT [] synonym: "turbinate bone" EXACT [EMAPA:25093] xref: EHDAA2:0004101 xref: EMAPA:25093 xref: GAID:224 xref: MA:0000286 xref: MESH:D014420 xref: NCIT:C49594 xref: SCTID:361931007 xref: UMLS:C1266928 {source="ncithesaurus:Nasal_Turbinate"} xref: Wikipedia:Nasal_concha is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0035612 ! nasal turbinal relationship: never_in_taxon NCBITaxon:436486 {notes="disputed", source="http://palaeos.com/vertebrates/bones/braincase/ethmoid.html"} relationship: transformation_of UBERON:0035007 ! nasal concha cartilage property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray153.png" xsd:anyURI property_value: external_ontology_notes "FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here" xsd:string {external_ontology="FMA"} property_value: taxon_notes "In humans, the turbinates divide the nasal airway into three groove-like air passages -and are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue." xsd:string {source="WP,unvetted"} property_value: taxon_notes "Turbinals are only ossified in birds and derived synapsids." xsd:string [Term] id: UBERON:0001763 name: odontogenic papilla def: "A condensation of odontoblasts that forms the part of a tooth germ that gives rise to dentin and pulp in the mature tooth. It lies below a cellular aggregation known as the enamel organ." [Wikipedia:Dental_papilla, ZFA:0005140] subset: uberon_slim subset: vertebrate_core synonym: "dental papilla" RELATED [MA:0001598] synonym: "dentinal papilla" RELATED [BTO:0001839] synonym: "dermal papilla" RELATED INCONSISTENT [ISBN:0073040584] synonym: "odontogenic condensation" EXACT [VSAO:0000025] synonym: "papilla dentis" RELATED OMO:0003011 [Wikipedia:Dental_papilla] synonym: "pharyngeal tooth mesenchyme" NARROW SENSU [ZFA:0005140] synonym: "tooth mesenchyme" RELATED [ZFA:0005140] xref: BTO:0001839 xref: EMAPA:32892 xref: FMA:57662 xref: GAID:1277 xref: MA:0001598 xref: MESH:D003771 xref: TAO:0005140 xref: VHOG:0001465 xref: VSAO:0000025 xref: Wikipedia:Dental_papilla xref: XAO:0004045 xref: ZFA:0005140 is_a: UBERON:0005856 ! developing mesenchymal condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest relationship: develops_from UBERON:0003856 {source="ZFA"} ! uncondensed odontogenic mesenchyme relationship: part_of UBERON:0008281 ! tooth bud property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray1011.png" xsd:anyURI property_value: development_notes "In humans, the dental papilla appears after 8-10 weeks intra uteral life" xsd:string property_value: external_definition "Cell condensation that is a well-defined population of densely organized mesenchymal cells that aggregates adjacent to an epithelium.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000025", ontology="VSAO", source="PSPUB:0000170"} property_value: external_definition "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005140", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "Teeth and tooth-like structures, together named odontodes, are repeated organs thought to share a common evolutionary origin. These structures can be found in gnathostomes at different locations along the body: oral teeth in the jaws, teeth and denticles in the oral-pharyngeal cavity, and dermal denticles on elasmobranch skin.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001465", ontology="VHOG", source="DOI:10.1186/1471-2148-11-307 The homology of odontodes in gnathostomes: insights from Dlx gene expression in the dogfish, Scyliorhinus canicula. BMC Evolutionary Biology (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001764 name: maxillary sinus def: "One of the paired paranasal sinuses, located in the body of the maxilla, communicating with the middle meatus of the nasal cavity." [MESH:A04.531.621.578, Wikipedia:Maxillary_sinus] subset: pheno_slim subset: uberon_slim synonym: "antrum of Highmore" EXACT [] synonym: "Highmore antrum" RELATED [MESH:A04.531.621.578] synonym: "maxillary antrum" RELATED [MESH:A04.531.621.578] synonym: "sinus maxilliaris" EXACT OMO:0003011 [Wikipedia:Maxillary_sinus] xref: CALOHA:TS-2231 xref: FMA:57715 xref: GAID:358 xref: MA:0001794 xref: MESH:D008443 xref: NCIT:C12275 xref: SCTID:181204007 xref: UMLS:C0024957 {source="ncithesaurus:Maxillary_Sinus"} xref: Wikipedia:Maxillary_sinus is_a: UBERON:0001825 ! paranasal sinus relationship: never_in_taxon NCBITaxon:33554 relationship: part_of UBERON:0002397 ! maxilla property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray1199.png" xsd:anyURI [Term] id: UBERON:0001765 name: mammary duct def: "Epithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct] comment: This structure regresses in most males subset: pheno_slim subset: uberon_slim synonym: "ductus lactiferi" RELATED OMO:0003011 [BTO:0002845, Wikipedia:Lactiferous_duct] synonym: "galactophorous duct" RELATED [Wikipedia:Lactiferous_duct] synonym: "galactophorous tubule" RELATED [BTO:0002845] synonym: "lactiferous duct" EXACT [FMA:58006] synonym: "lactiferous gland duct" EXACT [OBOL:automatic] synonym: "lactiferous tubule" RELATED [BTO:0002845] synonym: "mammary gland duct" EXACT [MA:0000791] synonym: "mammilary duct" RELATED [Wikipedia:Lactiferous_duct] xref: BTO:0002845 xref: CALOHA:TS-2385 xref: EMAPA:35538 xref: FMA:58006 xref: MA:0000791 xref: NCIT:C32910 xref: SCTID:361719004 xref: UMLS:C0222613 {source="ncithesaurus:Lactiferous_Duct"} xref: Wikipedia:Lactiferous_duct is_a: UBERON:0000058 ! duct is_a: UBERON:0003244 ! epithelium of mammary gland is_a: UBERON:0003914 ! epithelial tube property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg" xsd:anyURI [Term] id: UBERON:0001766 name: anterior chamber of eyeball def: "The space in the eye, filled with aqueous humor, and bounded anteriorly by the cornea and a small portion of the sclera and posteriorly by a small portion of the ciliary body, the iris, and part of the crystalline lens." [MESH:A09.371.060.067, MP:0005205] subset: pheno_slim synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709] synonym: "anterior chamber of eye" EXACT [] synonym: "camera anterior" EXACT [] synonym: "camera anterior bulbi" RELATED [BTO:0002084] synonym: "camera anterior bulbi oculi" RELATED OMO:0003011 [Wikipedia:Anterior_chamber_of_eyeball] synonym: "camera oculi anterior" RELATED [BTO:0002084] synonym: "eye anterior chamber" EXACT [] xref: BTO:0002084 xref: EHDAA2:0000129 xref: EHDAA:9033 xref: EMAPA:18231 xref: FMA:58078 xref: GAID:889 xref: MA:0000262 xref: MESH:D000867 xref: NCIT:C12667 xref: SCTID:181160009 xref: UMLS:C0003151 {source="ncithesaurus:Anterior_Chamber_of_the_Eye"} xref: VHOG:0001431 xref: Wikipedia:Anterior_chamber_of_eyeball is_a: UBERON:0006311 {source="FMA"} ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: external_definition "The part of the eyeball between the cornea and the iris, filled with aqueous humor. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001431", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/anterior+chamber"} property_value: external_ontology_notes "space in EHDAA2 - consider adding Cavity of anterior chamber of eyeball" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0001767 name: posterior chamber of eyeball def: "The ring-like space, filled with aqueous humor, between the iris/pupil anteriorly and the lens and ciliary body posteriorly." [ISBN:0-683-40008-8, MP:0005299] comment: The posterior chamber should not be confused with vitreous chamber. subset: pheno_slim synonym: "c. posterior bulbi" RELATED OMO:0003011 [Wikipedia:Posterior_chamber_of_eyeball] synonym: "camera oculi posterior" RELATED [BTO:0002086] synonym: "camera posterior" EXACT [] synonym: "camera posterior bulbi" RELATED [BTO:0002086] synonym: "eye posterior chamber" EXACT [] synonym: "posterior chamber of eye" EXACT [] xref: BTO:0002086 xref: FMA:58080 xref: MA:0002460 xref: NCIT:C12900 xref: SCTID:362504004 xref: UMLS:C0229094 {source="ncithesaurus:Posterior_Chamber_of_the_Eye"} xref: Wikipedia:Posterior_chamber_of_eyeball is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png" xsd:anyURI [Term] id: UBERON:0001768 name: uvea def: "The pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]." [MP:0005197, Wikipedia:Uvea] subset: pheno_slim subset: uberon_slim synonym: "pars iridica retinae" RELATED [Wikipedia:Uvea] synonym: "tunica vasculatis oculi" RELATED [Wikipedia:Uvea] synonym: "tunica vasculosa bulbi" RELATED OMO:0003011 [Wikipedia:Uvea] synonym: "tunica vasculosa of eyeball" EXACT [FMA:58103] synonym: "uvea" EXACT [FMA:58103] synonym: "uveal tract" EXACT [FMA:58103] synonym: "vascular layer of eyeball" RELATED [FMA:58103] xref: CALOHA:TS-2228 xref: EMAPA:35901 xref: FMA:58103 xref: GAID:912 xref: MA:0002480 xref: MESH:D014602 xref: NCIT:C12811 xref: SCTID:280648000 xref: UMLS:C0042160 {source="ncithesaurus:Uvea"} xref: Wikipedia:Uvea is_a: UBERON:0004923 {source="FMA"} ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000019 ! camera-type eye relationship: present_in_taxon NCBITaxon:7955 {source="DOI:10.1177/0192623311409597"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png" xsd:anyURI property_value: editor_note "TODO - check child terms, isa vs partof. See also MA:0001284 ! tunica vasculosa plexus" xsd:string property_value: has_relational_adjective "uveal" xsd:string [Term] id: UBERON:0001769 name: iris def: "The adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye." [ISBN:0-683-40008-8, MP:0001322] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] synonym: "irides" RELATED OMO:0003004 [] synonym: "irises" RELATED OMO:0003004 [VHOG:0000101] xref: AAO:0010347 xref: BTO:0000653 xref: CALOHA:TS-0491 xref: EFO:0004245 xref: EMAPA:19154 xref: EV:0100345 xref: FMA:58235 xref: GAID:917 xref: MA:0000273 xref: MESH:D007498 xref: NCIT:C12737 xref: SCTID:181164000 xref: TAO:0001238 xref: UMLS:C0022077 {source="ncithesaurus:Iris"} xref: VHOG:0000101 xref: Wikipedia:Iris_(anatomy) xref: XAO:0000185 xref: ZFA:0001238 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0004128 {source="XAO"} ! optic vesicle relationship: part_of UBERON:0011892 ! anterior uvea relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The opaque muscular contractile diaphragm suspended in the aqueous humour in front of the lens of the eye. The organ is perforated by the pupil and continues peripherally with the ciliary body. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000101", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "iridial" xsd:string property_value: homology_notes "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000101", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} property_value: taxon_notes "The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development [DOI:dx.doi.org/10.1006/dbio.1998.9019]" xsd:string [Term] id: UBERON:0001770 name: lacrimal canaliculus def: "The part of the lacrimal duct that connects the lacrimal punctum to the lacrimal sac." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "canaliculus lacrimalis" RELATED OMO:0003011 [Wikipedia:Lacrimal_canaliculi] synonym: "lacrimal duct" RELATED [https://www.bartleby.com/lit-hub/anatomy-of-the-human-body/fig-896/, ISBN:1587341026] xref: EMAPA:37624 {source="MA:th"} xref: FMA:58245 xref: MA:0001294 xref: NCIT:C32907 xref: SCTID:263348000 xref: UMLS:C0459631 {source="ncithesaurus:Lacrimal_Canaliculus"} xref: Wikipedia:Lacrimal_canaliculi is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system [Term] id: UBERON:0001771 name: pupil def: "The central circular aperture of the iris through which light rays enter the eye." [ISBN:0-683-40008-8, MP:0001317] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pupils" RELATED OMO:0003004 [ZFA:0001283] xref: AAO:0010351 xref: FMA:58252 xref: GAID:918 xref: MA:0001292 xref: MESH:D011680 xref: NCIT:C33429 xref: SCTID:35146001 xref: TAO:0001283 xref: UMLS:C0034121 {source="ncithesaurus:Pupil"} xref: VHOG:0000116 xref: Wikipedia:Pupil xref: XAO:0000283 xref: ZFA:0001283 is_a: UBERON:0000464 {source="AAO", source="FMA"} ! anatomical space relationship: part_of UBERON:0001769 ! iris property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Eye_iris.jpg" xsd:anyURI property_value: external_definition "The circular orifice in the centre of the iris, through which light enters into the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000116", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000116", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001772 name: corneal epithelium def: "The smooth stratified squamous epithelium that covers the outer surface of the cornea." [MESH:A09.371.060.217.325, MGI:smb, MP:0006000] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior corneal epithelium" EXACT [] synonym: "anterior endothelium of cornea" RELATED [BTO:0000287] synonym: "cornea epithelial tissue" EXACT [OBOL:automatic] synonym: "cornea epithelium" EXACT [OBOL:automatic] synonym: "e. anterius corneae" RELATED OMO:0003011 [Wikipedia:Corneal_epithelium] synonym: "endothelium anterius corneae" RELATED [BTO:0000287] synonym: "endothelium camerae anterioris bulbi" RELATED [BTO:0000287] synonym: "endothelium corneale" RELATED [BTO:0000287] synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic] synonym: "epithelium anterius (cornea)" EXACT [] synonym: "epithelium anterius corneae" EXACT OMO:0003011 [FMA:58263, FMA:TA] synonym: "epithelium corneæ anterior layer" EXACT [] synonym: "epithelium of cornea" EXACT [] synonym: "epithelium posterius corneae" RELATED [BTO:0000287] synonym: "external epithelium of cornea" EXACT [] xref: BTO:0000287 xref: CALOHA:TS-0173 xref: EFO:0001917 xref: EHDAA2:0000319 xref: EMAPA:17162 xref: FMA:58263 xref: GAID:895 xref: MA:0001243 xref: MESH:D019573 xref: NCIT:C12928 xref: SCTID:368825001 xref: TAO:0002187 xref: UMLS:C0459875 {source="ncithesaurus:Corneal_Epithelium"} xref: Wikipedia:Corneal_epithelium xref: ZFA:0001683 is_a: UBERON:0015808 ! eye epithelium relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png" xsd:anyURI property_value: external_definition "Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002187", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"} property_value: taxon_notes "In Humans: It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei" xsd:string property_value: taxon_notes "In zebrafish: nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals" xsd:string [Term] id: UBERON:0001773 name: sclera def: "Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]." [Wikipedia:Sclera, ZFIN:ZDB-PUB-050701-15] comment: Disease notes: implicated in rheumatoid arthritis. subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "scleral capsule" RELATED [] xref: AAO:0010354 xref: BTO:0001606 xref: EMAPA:19027 xref: EV:0100342 xref: FMA:58269 xref: GAID:911 xref: MA:0000280 xref: MESH:D012590 xref: NCIT:C12784 xref: SCTID:181163006 xref: UMLS:C0036410 {source="ncithesaurus:Sclera"} xref: VHOG:0001274 xref: Wikipedia:Sclera xref: XAO:0000183 xref: ZFA:0005563 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0003314 {source="ISBN:0781772214"} ! eye mesenchyme relationship: develops_from UBERON:0007213 {inferred_by="cjm", source="ISBN:0781772214", source="Wikipedia"} ! mesenchyme derived from head neural crest relationship: part_of UBERON:0012430 {source="FMA"} ! tunica fibrosa of eyeball relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: development_notes "Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]." xsd:string property_value: development_notes "Seko et al demonstrate chondrogenic potential and identify this as connective tissue[DOI:10.1371/journal.pone.0003709]." xsd:string property_value: external_definition "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted][Wikipedia:Sclera]." xsd:string {source="Wikipedia:Sclera"} property_value: external_definition "The tough, usually white, outer coat of the eyeball, covering all the posterior surface and continuous anteriorly with the cornea. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001274", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/sclera"} property_value: has_relational_adjective "scleral" xsd:string property_value: structure_notes "continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe." xsd:string property_value: taxon_notes "in fish, reptiles and monotremes the connective tissue of the sclera is skeletal" xsd:string [Term] id: UBERON:0001774 name: skeletal muscle of trunk def: "A skeletal muscle organ that is part of the trunk region." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim subset: vertebrate_core synonym: "body musculature" EXACT [ZFA:0000473] synonym: "muscle of trunk" EXACT [FMA:58274] synonym: "muscle organ of torso" EXACT [OBOL:automatic] synonym: "muscle organ of trunk" EXACT [OBOL:automatic] synonym: "torso muscle organ" EXACT [OBOL:automatic] synonym: "trunk muscle" EXACT [] synonym: "trunk muscle organ" EXACT [OBOL:automatic] synonym: "trunk musculature" EXACT [] xref: AAO:0000611 xref: EMAPA:35888 xref: FMA:58274 xref: MA:0000514 xref: TAO:0000473 xref: XAO:0003230 xref: ZFA:0000473 is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0004479 {source="prolog"} ! musculature of trunk property_value: editor_note "Note that this class excludes smooth muscle elements in the trunk region, such as the internal anal sphincter. This appears to be consistent with other ontologies such as FMA and ZFA which appear to only include skeletal muscles here. In fact the MA class 'trunk muscle' is classified as a 'set of skeletal muscles'." xsd:string property_value: external_ontology_notes "Many ontologies do not appear to have a coherent distinction between an individual muscle and the musculature (i.e. the set of muscles in a region), so we group all together here." xsd:string [Term] id: UBERON:0001775 name: ciliary body def: "The thickened portion of the vascular tunic, which lies between the choroid and the iris, composed of ciliary muscle and ciliary processes." [ISBN:0-683-40008-8, MP:0005099, Wikipedia:Ciliary_body] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] synonym: "ciliary bodies" RELATED OMO:0003004 [VHOG:0000102] synonym: "corpus ciliare" RELATED OMO:0003011 [Wikipedia:Ciliary_body] synonym: "ocular ciliary body" EXACT [] xref: AAO:0010341 xref: BTO:0000260 xref: CALOHA:TS-0694 xref: EMAPA:19065 xref: EV:0100346 xref: FMA:58295 xref: GAID:916 xref: MA:0000264 xref: MESH:D002924 xref: NCIT:C12345 xref: neuronames:1571 xref: SCTID:263340007 xref: UMLS:C0008779 {source="ncithesaurus:Ciliary_Body"} xref: VHOG:0000102 xref: Wikipedia:Ciliary_body xref: XAO:0000186 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0002346 {source="ISBN:0781772214"} ! neurectoderm relationship: part_of UBERON:0011892 ! anterior uvea relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: homology_notes "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000102", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001776 name: optic choroid def: "Vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [Wikipedia:Choroid] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chorioid" RELATED [BTO:0001829] synonym: "choroid" EXACT [MA:0000263] synonym: "choroid coat" EXACT [Wikipedia:Choroid] synonym: "choroidea" EXACT [Wikipedia:Choroid] synonym: "choroidea" RELATED OMO:0003011 [Wikipedia:Choroid] synonym: "eye choroid" EXACT [VHOG:0001568] synonym: "optic choroid" RELATED [ZFA:0005229] synonym: "posterior uvea" EXACT [Wikipedia:Uvea#Regions] xref: BTO:0001829 xref: CALOHA:TS-2054 xref: EMAPA:19077 xref: EV:0100347 xref: FMA:58298 xref: GAID:913 xref: MA:0000263 xref: MESH:D002829 xref: NCIT:C12344 xref: SCTID:181172003 xref: TAO:0005229 xref: UMLS:C0008520 {source="ncithesaurus:Choroid"} xref: VHOG:0001568 xref: Wikipedia:Choroid xref: ZFA:0005229 is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001768 {source="MA"} ! uvea relationship: part_of UBERON:0019207 ! chorioretinal region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: editor_note "check choroid vs choroid layer; check ZFA/TAO placement - no homology assertion in VHOG. Note this is entirely in the posterior region of eyeball in ZFA" xsd:string property_value: external_ontology_notes "MP treats posterior uvea and optic choroid as distinct" xsd:string {external_ontology="MP"} property_value: has_relational_adjective "choroidal" xsd:string [Term] id: UBERON:0001777 name: substantia propria of cornea def: "The lamellated connective tissue of the cornea between the Bowman and Descemet membranes." [ISBN:0-683-40008-8, MESH:A09.371.060.217.228, MP:0005300] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "corneal stroma" EXACT [MA:0001245] synonym: "stroma of cornea" EXACT [] synonym: "substantia propria" BROAD [] synonym: "substantia propria corneae" EXACT OMO:0003011 [FMA:58306, FMA:TA] xref: CALOHA:TS-1138 xref: EFO:0002514 xref: EMAPA:17602 xref: FMA:58306 xref: GAID:893 xref: MA:0001245 xref: MESH:D003319 xref: NCIT:C12699 xref: SCTID:362511000 xref: TAO:0002189 xref: UMLS:C0010040 {source="ncithesaurus:Corneal_Stroma"} xref: Wikipedia:Corneal_stroma xref: ZFA:0001685 is_a: UBERON:0003891 ! stroma relationship: develops_from UBERON:0007213 {inferred_by="cjm", source="ISBN:0781772214", source="Wikipedia"} ! mesenchyme derived from head neural crest relationship: part_of UBERON:0000964 ! cornea property_value: axiom_lost_from_external_ontology "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: develops_from tissue (UBERON:0000479)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: has_developmental_contribution_from tissue (UBERON:0000479)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png" xsd:anyURI property_value: external_definition "Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"} [Term] id: UBERON:0001778 name: ciliary epithelium def: "A double layer covering the ciliary body that produces aqueous humor." [Wikipedia:Ciliary_body#Ciliary_epithelium] subset: human_reference_atlas synonym: "ciliary body epithelium" EXACT [FMA:58464] synonym: "epithelium of ciliary body" EXACT [FMA:58464] synonym: "ocular ciliary epithelium" EXACT [] xref: BTO:0001770 xref: CALOHA:TS-0695 xref: EMAPA:35239 xref: FMA:58464 xref: MA:0001238 xref: NCIT:C32314 xref: SCTID:280870004 xref: UMLS:C0459736 {source="ncithesaurus:Ciliary_Epithelium"} xref: Wikipedia:Ciliary_body#Ciliary_epithelium is_a: UBERON:0000488 {source="FMA"} ! atypical epithelium is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001779 name: iris stroma def: "The delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "iridial stroma" EXACT [] synonym: "stroma of iris" EXACT [] xref: EMAPA:35451 xref: FMA:58526 xref: MA:0002777 xref: SCTID:280882008 xref: Wikipedia:Iris_stroma xref: ZFA:0005569 is_a: UBERON:0003891 ! stroma relationship: part_of UBERON:0001769 ! iris property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png" xsd:anyURI [Term] id: UBERON:0001780 name: spinal nerve def: "The any of the paired peripheral nerves formed by the union of the dorsal and ventral spinal roots from each spinal cord segment[MP,modified]." [MESH:A08.800.800.720, MP:0001077] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "backbone nerve" EXACT [OBOL:automatic] synonym: "nerve of backbone" EXACT [OBOL:automatic] synonym: "nerve of spinal column" EXACT [OBOL:automatic] synonym: "nerve of spine" EXACT [OBOL:automatic] synonym: "nerve of vertebral column" EXACT [OBOL:automatic] synonym: "nervi spinales" RELATED OMO:0003011 [Wikipedia:Spinal_nerve] synonym: "spinal column nerve" EXACT [OBOL:automatic] synonym: "spinal nerve tree" EXACT [] synonym: "spinal nerves" RELATED OMO:0003004 [BAMS:spin] synonym: "spine nerve" EXACT [OBOL:automatic] synonym: "vertebral column nerve" EXACT [OBOL:automatic] xref: AAO:0011101 xref: BAMS:spin xref: BTO:0000870 xref: EHDAA2:0001898 xref: EMAPA:16989 xref: FMA:5858 xref: GAID:841 xref: MA:0000233 xref: MESH:D013127 xref: NCIT:C12792 xref: neuronames:1228 xref: SCTID:361099009 xref: UMLS:C0037941 {source="ncithesaurus:Spinal_Nerve"} xref: VHOG:0000824 xref: Wikipedia:Spinal_nerve xref: XAO:0003101 is_a: UBERON:0001021 ! nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: external_definition "Any of the paired nerves emerging from the spinal cord, each attached to the cord by two roots: ventral and dorsal, and passing out between the vertebrae. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000824", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/spinal+nerve"} [Term] id: UBERON:0001781 name: layer of retina def: "Any of the layers that make up the retina[MP]." [MP:0003727] subset: pheno_slim subset: vertebrate_core synonym: "retina layer" EXACT [] synonym: "retina neuronal layer" EXACT [MP:0006069] synonym: "retinal layer" EXACT [] synonym: "retinal neuronal layer" EXACT [MP:0006069] xref: AAO:0010353 xref: EMAPA:35742 xref: FMA:58617 xref: MA:0001319 xref: NCIT:C49328 xref: SCTID:280657006 xref: UMLS:C0459649 {source="ncithesaurus:Retina_Layer"} xref: XAO:0000266 is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina property_value: external_ontology_notes "MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001782 name: pigmented layer of retina def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithelium, retinal pigment" RELATED [BTO:0001177] synonym: "outer pigmented layer of retina" EXACT [] synonym: "p. pigmentosa retinae" RELATED OMO:0003011 [Wikipedia:Retinal_pigment_epithelium] synonym: "pigment epithelium of retina" EXACT [] synonym: "pigmented epithelium" RELATED [] synonym: "pigmented retina" RELATED [] synonym: "pigmented retina epithelium" EXACT [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "PRE" RELATED [] synonym: "retinal pigment epithelium" EXACT [MP:0005201, Wikipedia:Retinal_pigment_epithelium] synonym: "retinal pigment layer" RELATED [VHOG:0000536] synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144] synonym: "RPE" RELATED [] synonym: "stratum pigmentosa retinae" RELATED OMO:0003011 [Wikipedia:Retinal_pigment_epithelium] synonym: "stratum pigmentosum (retina)" EXACT [] synonym: "stratum pigmentosum retinae" EXACT OMO:0003011 [FMA:58627, FMA:TA] xref: AAO:0011096 xref: BTO:0001177 xref: CALOHA:TS-0869 xref: EHDAA2:0001465 xref: EHDAA:4765 xref: EMAPA:17172 xref: EMAPA:35738 xref: FMA:58627 xref: MA:0000279 xref: MA:0003173 xref: NCIT:C33470 xref: SCTID:280662007 xref: TAO:0000144 xref: UMLS:C0035322 {source="ncithesaurus:Retinal_Pigment_Epithelium"} xref: VHOG:0000536 xref: Wikipedia:Retinal_pigment_epithelium xref: XAO:0003217 xref: ZFA:0000144 is_a: UBERON:0000957 ! lamina is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015808 ! eye epithelium relationship: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: external_definition "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000144", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "The monolayer of pigmented epithelium covering the neural retina.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011096", ontology="AAO", source="ZFA:0000144"} property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000536", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001783 name: optic disc def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "optic disk" EXACT [MESH:A08.800.800.120.680.660] synonym: "optic disk" RELATED [Wikipedia:Optic_disc] synonym: "optic nerve disc" RELATED [Wikipedia:Optic_disc] synonym: "optic nerve head" RELATED [Wikipedia:Optic_disc] synonym: "optic papilla" RELATED [Wikipedia:Optic_disc] synonym: "physiologic blind spot" RELATED [Wikipedia:Optic_disc] synonym: "physiologic blind spot of mariotte" RELATED [Wikipedia:Optic_disc] xref: CALOHA:TS-2153 xref: EFO:0001974 xref: EHDAA2:0001307 xref: EHDAA:9077 xref: EMAPA:18238 xref: FMA:58634 xref: MA:0000278 xref: MESH:D009898 xref: NCIT:C12760 xref: SCTID:362518006 xref: UMLS:C0029127 {source="ncithesaurus:Optic_Disc"} xref: VHOG:0000551 xref: Wikipedia:Optic_disc is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000966 ! retina relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png" xsd:anyURI property_value: external_definition "The small blind spot on the surface of the retina. It is the point where the fibers of the retina leave the eye and become part of the optic nerve. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/optic+disc"} property_value: homology_notes "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001784 name: obsolete macula lutea comment: Obsoleted as it accidentally grouped macula and macula lutea is_obsolete: true consider: UBERON:0000053 consider: UBERON:0000054 [Term] id: UBERON:0001785 name: cranial nerve def: "Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord." [Wikipedia:Cranial_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cranial nerves" RELATED [] synonym: "cranial neural tree organ" EXACT [] synonym: "nervus cranialis" RELATED OMO:0003011 [Wikipedia:Cranial_nerve] xref: AAO:0000108 xref: BAMS:cran xref: BIRNLEX:1623 xref: BTO:0001104 xref: EHDAA2:0000323 xref: EMAPA:17264 xref: FMA:5865 xref: GAID:802 xref: MA:0000215 xref: MBA:967 xref: MESH:D003391 xref: NCIT:C12700 xref: neuronames:1227 xref: SCTID:244447006 xref: TAO:0000641 xref: UMLS:C0010268 {source="BIRNLEX:1623", source="ncithesaurus:Cranial_Nerve"} xref: UMLS:C1269897 {source="BIRNLEX:1623"} xref: VHOG:0000279 xref: Wikipedia:Cranial_nerve xref: XAO:0000429 xref: XAO:0003089 xref: ZFA:0000641 is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0034713 ! cranial neuron projection bundle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Brain_human_normal_inferior_view_with_labels_en-2.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/84/Brain_human_normal_inferior_view_with_labels_en.svg" xsd:anyURI property_value: editor_note "classified as neural tree organ, not nerve in FMA. CN II poses a challenge here as it is not strictly a nerve, yet is expected to be classified under CN." xsd:string property_value: external_definition "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000641", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6" xsd:string property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000279", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001786 name: fovea centralis def: "A depression in the inner retinal surface within the macula lutea, the photoreceptor layer of which is entirely cones and which is specialized for maximum visual acuity." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Fovea] subset: pheno_slim subset: uberon_slim synonym: "centre of fovea" RELATED [BIRNLEX:2543] synonym: "centre of macula" EXACT [BIRNLEX:2543] synonym: "fovea" BROAD [] synonym: "fovea centralis in macula" EXACT [Wikipedia:Fovea_centralis_in_macula] xref: BIRNLEX:2543 xref: CALOHA:TS-2055 xref: EMAPA:37589 {source="MA:th"} xref: EV:0100350 xref: FMA:58658 xref: GAID:910 xref: MA:0001307 xref: MESH:D005584 xref: NCIT:C26463 xref: SCTID:264479005 xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis", source="BIRNLEX:2543"} xref: UMLS:C0450290 {source="BIRNLEX:2543"} xref: VHOG:0001572 xref: Wikipedia:Fovea_centralis_in_macula is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000053 ! macula lutea property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: external_definition "A small pit in the center of the macula lutea, the area of clearest vision, where the retinal layers are spread aside, and light falls directly on the cones. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/fovea"} property_value: function_notes "high acuity vision" xsd:string property_value: has_relational_adjective "foveal" xsd:string property_value: homology_notes "Definition of fovea centralis should be considered here as 'an area centralis at the visual axis' (reference 1). There is an uncertaincy of the relation, because: 1.-The fovea first appeared in evolution in the temporal retina of fishes. Then, in birds, the nasal fovea and bifoveal system with nasal and temporal foveas developed. The fovea disappeared in primitive mammals, and reappeared in primates. A residue of the fovea is conserved in the visual streak, and the disappearance and reappearance of the fovea, in primitive mammals and primates respectively, correlates with degeneration and restoration of cone pigment genes in photoreceptors (reference 2). 2.-Many retinal features (foveas, trichromacy, midget pathways and associated cell types) appear specific to primates. This has led to investigations in parallel with other mammalian models such as cat or rabbit. Correlation of the results often proves to be difficult, since an evolutionary scenario with transitions between the mammalian models is largely lacking (reference 3).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="DOI:10.1017/S095252380623342X Ahnelt PK, Schubert C, Kübber-Heiss A, Schiviz A, Anger E, Independent variation of retinal S and M cone photoreceptor topographies: A survey of four families of mammals. Visual neuroscience (2006), http://www.ncbi.nlm.nih.gov/pubmed/11193946 Azuma N, Molecular cell biology on morphogenesis of the fovea and evolution of the central vision. Nihon Ganka Gakkai Zasshi (2000), DOI:10.1016/S1350-9462(00)00012-4 Ahnelt PK, Kolb H, The mammalian photoreceptor mosaic-adaptive design. Progress in Retinal and Eye Research (2000)", source="http://bgee.unil.ch/"} property_value: taxon_notes "The fovea is also a pit in the surface of the retinas of many types of fish, reptiles, and birds. Among mammals, it is found only in simian primates. The retinal fovea takes slightly different forms in different types of animals. For example, in primates, cone photoreceptors line the base of the foveal pit, the cells that elsewhere in the retina form more superficial layers having been displaced away from the foveal region during late fetal and early postnatal life. Other foveae may show only a reduced thickness in the inner cell layers, rather than an almost complete absence" xsd:string [Term] id: UBERON:0001787 name: photoreceptor layer of retina def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "layer of rods and cones" RELATED [] synonym: "retina photoreceptor layer" EXACT [] synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143] synonym: "retinal photoreceptor layers" RELATED OMO:0003004 [ZFA:0000143] synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] synonym: "stratum segmentorum externorum et internorum retinae" EXACT OMO:0003011 [FMA:58680, FMA:TA] xref: EMAPA:35686 xref: FMA:58680 xref: MA:0001308 xref: NCIT:C32954 xref: TAO:0000143 xref: UMLS:C0229206 {source="ncithesaurus:Layer_of_the_Rods_and_Cones"} xref: VHOG:0001165 xref: Wikipedia:Layer_of_rods_and_cones xref: XAO:0003215 xref: ZFA:0000143 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: external_ontology_notes "we follow MA and ZFA in subdividing this into inner and outer segments" xsd:string {external_ontology="MA"} property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001165", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001788 name: outer limiting layer of retina def: "The row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109, MP:0010236] subset: pheno_slim subset: vertebrate_core synonym: "blood retina barrier" RELATED [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] synonym: "BRB" RELATED OMO:0003000 [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] synonym: "external limiting lamina of retina" EXACT [] synonym: "external limiting membrane" EXACT [ZFA:0001331] synonym: "external limiting membrane of retina" EXACT [] synonym: "outer limiting membrane" EXACT [XAO:0003224] synonym: "outer limiting membrane of retina" EXACT [] synonym: "outer limiting membranes" RELATED OMO:0003004 [ZFA:0001331] synonym: "retina external limiting lamina" EXACT [] synonym: "retina outer limiting membrane" EXACT [MP:0010236] synonym: "stratum limitans externum (retina)" EXACT [] synonym: "stratum limitans externum retinae" EXACT OMO:0003011 [FMA:58683, FMA:TA] xref: EMAPA:36518 xref: FMA:58683 xref: MA:0001309 xref: NCIT:C33235 xref: SCTID:280676008 xref: TAO:0001331 xref: UMLS:C1518685 {source="ncithesaurus:Outer_Limiting_Membrane"} xref: Wikipedia:External_limiting_membrane xref: XAO:0003224 xref: ZFA:0001331 is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina [Term] id: UBERON:0001789 name: outer nuclear layer of retina def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "external nuclear layer" RELATED [BTO:0005600] synonym: "layer of outer granules" RELATED [BTO:0005600] synonym: "neural retina outer nuclear layer" EXACT [EMAPA:19157] synonym: "ONL" NARROW [] synonym: "outer nuclear layer" BROAD [] synonym: "retina outer nuclear layer" EXACT [] synonym: "retina, outer nuclear layer" RELATED [BAMS:Ronl] synonym: "retinal outer nuclear layer" EXACT [] synonym: "retinal outer nuclear layers" RELATED OMO:0003004 [ZFA:0001464] synonym: "stratum nucleare externum (retina)" EXACT [] synonym: "stratum nucleare externum retinae" EXACT OMO:0003011 [FMA:58684, FMA:TA] xref: BAMS:Ronl xref: BTO:0005600 xref: EMAPA:19157 xref: FMA:58684 xref: MA:0001315 xref: NCIT:C33236 xref: SCTID:280678009 xref: TAO:0001464 xref: UMLS:C0229210 {source="ncithesaurus:Outer_Nuclear_Layer_of_Retina"} xref: VHOG:0001170 xref: Wikipedia:Outer_nuclear_layer xref: XAO:0003219 xref: ZFA:0001464 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer relationship: present_in_taxon NCBITaxon:9606 property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001170", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001790 name: outer plexiform layer of retina def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] subset: pheno_slim subset: vertebrate_core synonym: "external plexiform layer" BROAD [BTO:0003174] synonym: "OPL" NARROW OMO:0003000 [] synonym: "outer plexiform layer" EXACT [BTO:0003174] synonym: "retina outer plexiform layer" EXACT [] synonym: "retina, outer plexiform layer" RELATED [BAMS:Ropl] synonym: "retinal outer plexiform layer" EXACT [] synonym: "retinal outer plexiform layers" RELATED OMO:0003004 [ZFA:0001330] synonym: "stratum plexiforme externum" EXACT [] synonym: "stratum plexiforme externum retinae" EXACT OMO:0003011 [FMA:58685, FMA:TA] xref: BAMS:Ropl xref: BTO:0003174 xref: EMAPA:35744 xref: FMA:58685 xref: MA:0001316 xref: NCIT:C33237 xref: SCTID:280684007 xref: TAO:0001330 xref: UMLS:C0229217 {source="ncithesaurus:Outer_Plexiform_Layer"} xref: VHOG:0001171 xref: Wikipedia:Outer_plexiform_layer xref: XAO:0003218 xref: ZFA:0001330 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: external_definition "The layer within the retina where the bipolar cells synapse with the photoreceptor cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001330", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001171", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001791 name: inner nuclear layer of retina def: "Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia)." [NLX:93816] comment: AO notes NLXANAT:1005031 appears to be retired subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "INL" NARROW [] synonym: "inner nuclear layer" EXACT [] synonym: "intermediate cell layer" EXACT [ZFA:0000119] synonym: "layer of inner granules" RELATED [NLX:93816] synonym: "neural retina inner nuclear layer" EXACT [EMAPA:19155] synonym: "retina inner nuclear layer" EXACT [] synonym: "retina, inner nuclear layer" RELATED [BAMS:Rinl] synonym: "retinal inner nuclear layer" EXACT [] synonym: "stratum nucleare internum" EXACT [] synonym: "stratum nucleare internum retinae" EXACT OMO:0003011 [FMA:58686, FMA:TA] xref: BAMS:Rinl xref: BTO:0003176 xref: EMAPA:19155 xref: FMA:58686 xref: MA:0001311 xref: NCIT:C32808 xref: NLX:93816 xref: NLXANAT:1005031 xref: SCTID:362520009 xref: TAO:0000119 xref: UMLS:C0229211 {source="ncithesaurus:Inner_Nuclear_Layer"} xref: VHOG:0001167 xref: Wikipedia:Inner_nuclear_layer xref: XAO:0003221 xref: ZFA:0000119 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells[BTO:0003176]." xsd:string {source="BTO:0003176"} property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001167", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001792 name: ganglionic layer of retina def: "Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer." [NLX:36500] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglion cell layer" BROAD [FMA:58687, ZFA:0000024] synonym: "ganglionic cell layer of retina" EXACT [FMA:58687] synonym: "GCL layer" EXACT [] synonym: "retina ganglion cell layer" EXACT [] synonym: "retina ganglion layer" EXACT [] synonym: "retina, ganglion cell layer" RELATED [BAMS:Rgcl] synonym: "retinal ganglion cell layer" EXACT [] synonym: "retinal ganglion layer" EXACT [MP:0008510] synonym: "RGC layer" EXACT [] synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687] synonym: "stratum ganglionicum retinae" RELATED OMO:0003011 [Wikipedia:Ganglion_cell_layer] xref: BAMS:Rgcl xref: BTO:0003398 xref: CALOHA:TS-0867 xref: EMAPA:35739 xref: FMA:58687 xref: MA:0001310 xref: NCIT:C32652 xref: NLX:36500 xref: NLXANAT:1005030 xref: SCTID:280670002 xref: TAO:0000024 xref: VHOG:0001166 xref: Wikipedia:Ganglion_cell_layer xref: XAO:0003223 xref: ZFA:0000024 is_a: UBERON:0001781 {source="FMA"} ! layer of retina relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: external_definition "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain[Wikipedia:Ganglion_cell_layer]." xsd:string {source="Wikipedia:Ganglion_cell_layer"} property_value: external_ontology_notes "NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030]" xsd:string {external_ontology="NIF"} property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001166", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001793 name: nerve fiber layer of retina alt_id: UBERON:0005888 def: "Layer of the retina formed by expansion of the fibers of the optic nerve." [ISBN:0-914294-08-3, MGI:smb] subset: pheno_slim subset: vertebrate_core synonym: "layer of nerve fibers of retina" EXACT [] synonym: "layer of nerve fibres of retina" EXACT [] synonym: "nerve fiber layer" BROAD [ZFA:0001619] synonym: "neural retina nerve fibre layer" RELATED [EMAPA:18591] synonym: "optic fiber layer" EXACT [DMBA:15652] synonym: "optic fiber layer" RELATED [VHOG:0001169] synonym: "optic fiber layers" RELATED OMO:0003004 [TAO:0002212] synonym: "retina nerve fiber layer" EXACT [] synonym: "stratum neurofibrarum (retina)" EXACT [] synonym: "stratum neurofibrarum retinae" EXACT OMO:0003011 [FMA:58688, FMA:TA] synonym: "stratum neurofibrum retinae" RELATED OMO:0003011 [Wikipedia:Nerve_fiber_layer] synonym: "stratum opticum of retina" EXACT [] xref: DMBA:15652 xref: EMAPA:18591 xref: FMA:58688 xref: MA:0001314 xref: SCTID:280671003 xref: TAO:0002212 xref: VHOG:0001169 xref: Wikipedia:Nervous_system_fiber_layer xref: XAO:0003220 xref: ZFA:0001619 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001169", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001794 name: inner limiting layer of retina def: "The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] subset: pheno_slim subset: vertebrate_core synonym: "ILM" BROAD OMO:0003000 [ZFA:0001029] synonym: "inner limiting membrane" EXACT [XAO:0003222] synonym: "inner limiting membrane of retina" EXACT [] synonym: "inner limiting membranes" RELATED OMO:0003004 [ZFA:0001029] synonym: "internal limiting lamina of retina" EXACT [] synonym: "internal limiting membrane of retina" EXACT [] synonym: "retina inner limiting membrane" EXACT [MP:0010235] synonym: "retina internal limiting lamina" EXACT [] synonym: "stratum limitans internum retinae" EXACT OMO:0003011 [FMA:58689, FMA:TA] xref: EMAPA:36519 xref: FMA:58689 xref: MA:0001313 xref: NCIT:C32807 xref: SCTID:280677004 xref: TAO:0001029 xref: UMLS:C1512783 {source="ncithesaurus:Inner_Limiting_Membrane"} xref: Wikipedia:Inner_limiting_membrane xref: XAO:0003222 xref: ZFA:0001029 is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina property_value: editor_note "TODO - check frog/fish" xsd:string property_value: external_definition "Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf[ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3]." xsd:string {source="ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3"} [Term] id: UBERON:0001795 name: inner plexiform layer of retina def: "Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)." [NLX:20558] subset: pheno_slim subset: vertebrate_core synonym: "inner plexiform layer" RELATED [BTO:0003175] synonym: "internal plexiform layer of retina" RELATED [NLXANAT:1005032] synonym: "IPL" NARROW OMO:0003000 [] synonym: "retina inner plexiform layer" EXACT [] synonym: "retina, inner plexiform layer" RELATED [BAMS:Ripl] synonym: "retinal inner plexiform layer" EXACT [] synonym: "retinal internal plexiform layer" RELATED [NLXANAT:1005032] synonym: "stratum plexifome internum" RELATED [BTO:0003175] synonym: "stratum plexiforme internum" EXACT [FMA:58704] synonym: "stratum plexiforme internum retinae" RELATED OMO:0003011 [Wikipedia:Inner_plexiform_layer] xref: BAMS:Ripl xref: BTO:0003175 xref: EMAPA:35741 xref: FMA:58704 xref: MA:0001312 xref: NCIT:C32809 xref: NLX:20558 xref: NLXANAT:1005032 xref: SCTID:280682006 xref: TAO:0001329 xref: UMLS:C0229221 {source="ncithesaurus:Inner_Plexiform_Layer"} xref: VHOG:0001168 xref: Wikipedia:Inner_plexiform_layer xref: XAO:0003225 xref: ZFA:0001329 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: external_definition "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO][GO:0010842]." xsd:string {source="GO:0010842"} property_value: external_definition "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001329", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "http://neurolex.org/wiki/Nlx_anat_1005032 appears to be retired" xsd:string property_value: homology_notes "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001168", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001796 name: aqueous humor of eyeball def: "A thick watery refractive medium that fills the space between the lens and the cornea[WP]." [Wikipedia:Aqueous_humor] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "aqueous humor" EXACT [] synonym: "aqueous humour" EXACT [EHDAA2:0000139] synonym: "humor aquosus" EXACT OMO:0003011 [FMA:58819, FMA:TA] xref: EHDAA2:0000139 xref: EHDAA:10196 xref: EMAPA:18232 xref: ENVO:02000024 xref: FMA:58819 xref: GAID:890 xref: MA:0001236 xref: MESH:D001082 xref: NCIT:C13190 xref: SCTID:280587006 xref: UMLS:C0003662 {source="ncithesaurus:Aqueous_Humor"} xref: VHOG:0000548 xref: Wikipedia:Aqueous_humor xref: ZFA:0005564 is_a: UBERON:0006312 ! ocular refractive media is_a: UBERON:0006314 ! bodily fluid relationship: part_of UBERON:0001766 {notes="FMA def states A and P", notes="located_in in EHDAA2", source="VHOG"} ! anterior chamber of eyeball property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: external_definition "The fluid produced by the ciliary process in the eye and occupying the anterior and posterior chambers. It provides nourishment for the lens and cornea and maintains the ocular pressure, and hence the optical integrity of the eyeball. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000548", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aqueous+humour"} property_value: external_ontology_notes "FMA says A+P chambers, and MA states A chamber. ZFA states A chamber and tha it is produced primarily by dorsal ciliary epithelial cells.To be investigated across taxa." xsd:string {external_ontology="FMA"} property_value: homology_notes "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000548", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001797 name: vitreous humor def: "A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina." [MP:0002699] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "humor vitreous" EXACT [] synonym: "humor vitreus" EXACT OMO:0003011 [FMA:58822, FMA:TA] synonym: "humoral fluid" RELATED [BTO:0001451] synonym: "ocular fluid" RELATED [BTO:0001451] synonym: "portion of vitreous humor" BROAD [FMA:67388] synonym: "vitreous" EXACT [ZFA:0005561] synonym: "vitreous fluid" RELATED [BTO:0001451] synonym: "vitreous humour" RELATED [] synonym: "whole portion of vitreous humor" EXACT [FMA:58822] xref: BTO:0001451 xref: CALOHA:TS-0308 xref: EMAPA:17837 xref: ENVO:02000032 xref: EV:0100344 xref: FMA:58822 xref: MA:0001286 xref: MESH:D014822 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C13323 xref: UMLS:C0229096 {source="ncithesaurus:Vitreous_Humor"} xref: VHOG:0000795 xref: Wikipedia:Vitreous_humour xref: ZFA:0005561 is_a: UBERON:0006312 ! ocular refractive media relationship: part_of UBERON:0001798 ! vitreous body property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI [Term] id: UBERON:0001798 name: vitreous body def: "Gelatinous mucoid tissue that is composed of vitreous humor and fills the cavity behind the crystalline lens of the eye and in front of the retina[MP,modified]." [MP:0002699] subset: pheno_slim subset: uberon_slim xref: CALOHA:TS-0308 xref: FMA:58827 xref: GAID:919 xref: MA:0002462 xref: MESH:D014822 xref: NCIT:C33884 xref: SCTID:181170006 xref: UMLS:C0042905 {source="ncithesaurus:Vitreous_Body"} is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0011825 {source="FMA"} ! loose connective tissue relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: editor_note "distinciton between body and humor requires more work. These may be merged in future. Note that FMA includes the hyaloid canal as part of the vitreous body" xsd:string [Term] id: UBERON:0001799 name: vitreous chamber of eyeball def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087] subset: uberon_slim synonym: "camera postrema" EXACT [FMA:58848] synonym: "camera postrema bulbi oculi" EXACT OMO:0003011 [FMA:58848, FMA:TA] synonym: "camera vitrea" EXACT [FMA:58848] synonym: "camera vitrea bulbi" EXACT [FMA:58848] synonym: "postremal chamber" EXACT [FMA:58848] synonym: "postremal chamber of eyeball" EXACT [FMA:58848] synonym: "vitreous chamber" EXACT [FMA:58848] xref: BTO:0002087 xref: EMAPA:37805 {source="MA:th"} xref: FMA:58848 xref: MA:0002461 xref: NCIT:C33885 xref: UMLS:C0229095 {source="ncithesaurus:Vitreous_Chamber"} xref: Wikipedia:Vitreous_chamber is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001802 ! posterior segment of eyeball [Term] id: UBERON:0001800 name: sensory ganglion def: "The clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960] subset: human_reference_atlas subset: pheno_slim synonym: "ganglion sensorium" EXACT OMO:0003011 [] xref: AEO:0001000 xref: BTO:0005630 xref: EMAPA:36596 xref: FMA:5885 xref: MA:0002566 xref: MESH:D017950 xref: NCIT:C13060 xref: UMLS:C0206429 {source="ncithesaurus:Sensory_Ganglion"} is_a: UBERON:0000045 ! ganglion relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001801 name: anterior segment of eyeball def: "Any of the parts of the eye that lie in front of, or ventral to, the lens (inclusive)." [ISBN:0-683-40008-8, MESH:A09.371.060, MP:0005193] subset: pheno_slim subset: vertebrate_core synonym: "anterior eye segment" EXACT [] synonym: "anterior segment eye" EXACT [ZFA:0005566] synonym: "anterior segment of eye" EXACT [] synonym: "anterior segment of the eye" EXACT [] synonym: "eye anterior segment" EXACT [] synonym: "segmentum anterius (bulbus oculi)" EXACT [] synonym: "segmentum anterius bulbi oculi" RELATED OMO:0003011 [Wikipedia:Anterior_segment_of_eyeball] xref: EMAPA:36594 xref: FMA:58865 xref: MA:0002484 xref: MESH:D000869 xref: NCIT:C12668 xref: SCTID:280658001 xref: UMLS:C0003153 {source="ncithesaurus:Anterior_Eye_Segment"} xref: Wikipedia:Anterior_segment_of_eyeball xref: ZFA:0005566 is_a: UBERON:0000063 ! organ subunit relationship: mutually_spatially_disjoint_with UBERON:0001802 {exceptions="ZFA", source="https://github.com/obophenotype/uberon/issues/378", status="pending"} ! posterior segment of eyeball relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png" xsd:anyURI [Term] id: UBERON:0001802 name: posterior segment of eyeball def: "Any of the parts of the eye that lie in back of, or dorsal to, the lens (but not inclusive)." [ISBN:0-683-40008-8, MP:0005195] subset: pheno_slim subset: vertebrate_core synonym: "eye posterior segment" EXACT [] synonym: "posterior eye segment" EXACT [] synonym: "posterior segment eye" EXACT [ZFA:0005567] synonym: "posterior segment of eye" EXACT [] synonym: "posterior segment of the eye" EXACT [] synonym: "segmentum posterius (bulbus oculi)" EXACT [] synonym: "segmentum posterius bulbi oculi" RELATED OMO:0003011 [Wikipedia:Posterior_segment_of_eyeball] xref: EMAPA:36595 xref: FMA:58868 xref: MA:0002485 xref: NCIT:C12906 xref: SCTID:280659009 xref: UMLS:C0278450 {source="ncithesaurus:Posterior_Eye_Segment"} xref: Wikipedia:Posterior_segment_of_eyeball xref: ZFA:0005567 is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI [Term] id: UBERON:0001803 name: epithelium of lens def: "A layer of epithelial cells that is part of the eye." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic] synonym: "epithelial tissue of lens" EXACT [OBOL:automatic] synonym: "epithelium lentis" EXACT OMO:0003011 [FMA:58871, FMA:TA] synonym: "epithelium of eye lens" EXACT [OBOL:automatic] synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic] synonym: "eye lens epithelium" EXACT [OBOL:automatic] synonym: "lens epithelial tissue" EXACT [OBOL:automatic] synonym: "lens epithelium" EXACT [] xref: BTO:0001873 xref: CALOHA:TS-0543 xref: EMAPA:32871 xref: FMA:58871 xref: MA:0001301 xref: SCTID:362523006 xref: TAO:0001326 xref: Wikipedia:Lens_(anatomy)#Lens_Epithelium xref: XAO:0004094 xref: ZFA:0001326 is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0000965 ! lens of camera-type eye relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "this class is the superclass of the anterior epithelium and equatorial epithlium, although the term 'lens epithelium' may refer specifically to the former" xsd:string [Term] id: UBERON:0001804 name: capsule of lens def: "The elastic, clear, membrane-like structure, that is outer most layer of the lens." [MGI:smb, MP:0003236, PMID:15483628] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "capsula lentis" EXACT OMO:0003011 [] synonym: "lens capsule" EXACT [] xref: EHDAA2:0000977 xref: EMAPA:18237 xref: FMA:58881 xref: MA:0001300 xref: NCIT:C32975 xref: SCTID:244500004 xref: UMLS:C0229232 {source="ncithesaurus:Lens_Capsule"} xref: VHOG:0000550 xref: Wikipedia:Lens_(anatomy)#Lens_capsule xref: ZFA:0005574 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane relationship: develops_from UBERON:0005614 {source="EHDAA2"} ! lens anterior epithelium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png" xsd:anyURI property_value: external_definition "The transparent membrane which surrounds the lens of the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000550", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_ontology_notes "FMA classifies this is a capsule and hence an organ part. In contrast we classify this as acellular" xsd:string {external_ontology="FMA"} property_value: homology_notes "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000550", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24", source="http://bgee.unil.ch/"} property_value: structure_notes "synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs). [Wikipedia:Capsule_of_lens" xsd:string [Term] id: UBERON:0001805 name: autonomic ganglion def: "Ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion] subset: human_reference_atlas subset: uberon_slim synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion autonomicum" RELATED OMO:0003011 [Wikipedia:Autonomic_ganglion] synonym: "ganglion of autonomic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of visceral nervous system" EXACT [OBOL:automatic] synonym: "visceral nervous system ganglion" EXACT [OBOL:automatic] xref: AEO:0001001 xref: CALOHA:TS-2340 xref: EMAPA:18221 xref: FMA:5889 xref: MA:0000220 xref: MESH:D005725 xref: NCIT:C12720 xref: UMLS:C0017068 {source="ncithesaurus:Autonomic_Ganglion"} xref: Wikipedia:Autonomic_ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI [Term] id: UBERON:0001806 name: sympathetic ganglion def: "A ganglion of the sympathetic nervous system. Examples: paravertebral and the prevertebral ganglia, which include the sympathetic chain ganglia, the superior, middle, and inferior cervical ganglia, and the aorticorenal, celiac, and stellate ganglia." [http://orcid.org/0000-0002-6601-2165, MP:0001008] subset: pheno_slim subset: uberon_slim synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "ganglion sympatheticum" EXACT [] synonym: "ganglion sympathicum" RELATED OMO:0003011 [BTO:0001333, Wikipedia:Sympathetic_ganglion] synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic] synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic] xref: AAO:0010773 xref: BTO:0001333 xref: CALOHA:TS-0994 xref: EHDAA2:0001969 xref: EMAPA:17157 xref: FMA:5890 xref: MA:0000226 xref: MESH:D005728 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12467 xref: SCTID:362485003 xref: UMLS:C0017071 {source="ncithesaurus:Sympathetic_Ganglion"} xref: Wikipedia:Sympathetic_ganglion is_a: UBERON:0001805 ! autonomic ganglion relationship: develops_from UBERON:0003083 {source="DOI:10.1101/gr.157586.113", source="ISBN:0073040584"} ! trunk neural crest relationship: part_of UBERON:0000013 ! sympathetic nervous system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI [Term] id: UBERON:0001807 name: paravertebral ganglion alt_id: UBERON:0005466 def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "ganglia of sympathetic trunk" RELATED [Wikipedia:Paravertebral_ganglia] synonym: "ganglia trunci sympathici" RELATED OMO:0003011 [Wikipedia:Paravertebral_ganglia] synonym: "ganglion of sympathetic trunk" EXACT [] synonym: "ganglion trunci sympathetici" EXACT OMO:0003011 [] synonym: "ganglion trunci sympathici" EXACT OMO:0003011 [FMA:5891, FMA:TA] synonym: "paravertebral ganglia" RELATED OMO:0003004 [FMA:80128] synonym: "paravertebral ganglion" RELATED [Wikipedia:Paravertebral_ganglia] synonym: "sympathetic chain ganglia" RELATED OMO:0003004 [Wikipedia:Paravertebral_ganglia] synonym: "sympathetic chain ganglion" EXACT [] xref: EHDAA2:0001403 xref: EHDAA:5635 xref: FMA:5891 xref: MA:0003100 xref: SCTID:324478000 xref: TAO:0001556 xref: Wikipedia:Paravertebral_ganglion xref: ZFA:0001556 is_a: UBERON:0001806 ! sympathetic ganglion is_a: UBERON:0007134 {source="ZFA"} ! trunk ganglion relationship: fma_set_term FMA:80128 relationship: part_of UBERON:0000407 ! sympathetic trunk relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png" xsd:anyURI [Term] id: UBERON:0001808 name: parasympathetic ganglion def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ganglion parasympathicum" RELATED OMO:0003011 [BTO:0001256, Wikipedia:Parasympathetic_ganglion] xref: BTO:0001256 xref: EHDAA2:0001400 xref: EMAPA:32813 xref: FMA:5894 xref: MA:0002469 xref: MESH:D005726 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C52557 xref: NLXANAT:100303 xref: SCTID:279284004 xref: UMLS:C0017069 {source="ncithesaurus:Parasympathetic_Ganglion"} xref: Wikipedia:Parasympathetic_ganglion is_a: UBERON:0001805 ! autonomic ganglion is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0000011 ! parasympathetic nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI [Term] id: UBERON:0001809 name: enteric ganglion subset: pheno_slim synonym: "intramural ganglion" EXACT [FMA:5896] xref: EMAPA:35312 xref: FMA:5896 xref: MA:0001144 xref: NCIT:C52709 xref: UMLS:C0501399 {source="ncithesaurus:Enteric_Ganglion"} xref: Wikipedia:Enteric_ganglia is_a: UBERON:0001808 {source="FMA"} ! parasympathetic ganglion relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0001810 name: nerve plexus def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, https://github.com/obophenotype/cell-ontology/issues/1306, Wikipedia:Nervous_system_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "plexus" BROAD [] xref: AEO:0000138 xref: BTO:0000205 xref: EHDAA2:0003138 xref: EHDAA:3780 xref: EMAPA:37683 {source="MA:th"} xref: FMA:5901 xref: MA:0002407 xref: NCIT:C12929 xref: SCTID:122455009 xref: UMLS:C0501403 {source="ncithesaurus:Nerve_Plexus"} xref: Wikipedia:Nervous_system_plexus is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001016 ! nervous system relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "Made to be a subtype of junction rather than tissue to be consistent with FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001811 name: conjunctiva def: "The mucous membrane that lines the inner surface of the eyelids and the front of the eyeball." [MESH:A09.371.060.200, MGI:csmith, MP:0001310] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "conjunctivae" EXACT OMO:0003004 [XAO:0000182] synonym: "conjunctivas" EXACT OMO:0003004 [XAO:0000182] synonym: "tunica conjunctiva" EXACT OMO:0003011 [FMA:TA] synonym: "wall of conjunctival sac" EXACT [FMA:59011] xref: AAO:0010343 xref: BTO:0003415 xref: CALOHA:TS-2232 xref: EFO:0000374 xref: EV:0100340 xref: FMA:59011 xref: GAID:898 xref: MA:0000265 xref: MESH:D003228 xref: NCIT:C12341 xref: SCTID:181161008 xref: UMLS:C0009758 {source="ncithesaurus:Conjunctiva"} xref: Wikipedia:Conjunctiva xref: XAO:0000182 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm relationship: part_of UBERON:0005908 {source="cjm"} ! conjunctival sac relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png" xsd:anyURI property_value: has_relational_adjective "conjunctival" xsd:string [Term] id: UBERON:0001812 name: palpebral conjunctiva def: "A thin transparent mucous membrane that covers the posterior surface of the eyelids and is continuous with the bulbar conjunctiva at the conjunctival fornicies." [MP:0013394] comment: lines the eyeballs subset: pheno_slim synonym: "conjunctival layer of eyelids" EXACT [MP:0013394] synonym: "eyelid conjunctiva" RELATED [] synonym: "tarsal conjunctiva" EXACT [Wikipedia:Conjunctiva] synonym: "tunica conjunctiva palpebrum" EXACT [] xref: FMA:59025 xref: MA:0001265 xref: NCIT:C12901 xref: SCTID:280666005 xref: UMLS:C0229274 {source="ncithesaurus:Palpebral_Conjunctiva"} is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva relationship: part_of UBERON:0001711 {source="FMA", source="MA"} ! eyelid [Term] id: UBERON:0001813 name: spinal nerve plexus def: "An intermingling of fiber fascicles from adjacent spinal nerves to form a network." [http://www.medilexicon.com/medicaldictionary.php?t=70024] subset: human_reference_atlas synonym: "plexus nervorum spinalium" EXACT OMO:0003011 [FMA:5903, FMA:TA] synonym: "plexus of spinal nerves" EXACT [FMA:5903] synonym: "somatic nerve plexus" EXACT [FMA:5903] synonym: "spinal nerve plexus" EXACT [FMA:5903] xref: EHDAA2:0001899 xref: EMAPA:16987 xref: FMA:5903 xref: MA:0000235 xref: NCIT:C49601 xref: SCTID:42280003 xref: UMLS:C0228603 {source="ncithesaurus:Spinal_Nerve_Plexus"} xref: VHOG:0000925 is_a: UBERON:0001810 ! nerve plexus relationship: present_in_taxon NCBITaxon:9606 property_value: homology_notes "To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000926", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.436", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001814 name: brachial nerve plexus def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [UBERON:cjm, Wikipedia:Brachial_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "brachial plexus" EXACT [MA:0001180] synonym: "plexus brachialis" RELATED OMO:0003011 [Wikipedia:Brachial_plexus] xref: EHDAA2:0000180 xref: EHDAA:3782 xref: EMAPA:16988 xref: FMA:5906 xref: GAID:842 xref: MA:0001180 xref: MESH:D001917 xref: NCIT:C12682 xref: SCTID:181002002 xref: UMLS:C0006090 {source="ncithesaurus:Brachial_Plexus"} xref: VHOG:0000372 xref: Wikipedia:Brachial_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001813 ! spinal nerve plexus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray808.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c9/Brachial_plexus_color.svg" xsd:anyURI property_value: editor_note "check superclass - nerve vs collection of fibers vs junction; note that FMA also has 'brachial autonomic nerve plexus'" xsd:string property_value: external_definition "A nerve plexus originating from the anterior branches of the last four cervical and the first thoracic spinal nerves, giving off many of the principal nerves of the shoulder, chest, and arms. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000372", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/brachial+plexus"} property_value: homology_notes "To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000372", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.436", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001815 name: lumbosacral nerve plexus def: "An arrangement of nerve fibers, running from the spine that travels to the pelvic appendage where it innervates skin and muscle." [UBERON:cjm] subset: uberon_slim synonym: "lumbosacral plexus" EXACT [] synonym: "plexus lumbosacralis" EXACT OMO:0003011 [FMA:5907, FMA:TA] synonym: "plexus lumbosacralis" RELATED OMO:0003011 [Wikipedia:Lumbosacral_plexus] xref: BAMS:lsp xref: EHDAA2:0001040 xref: EHDAA:4673 xref: EMAPA:17587 xref: FMA:5907 xref: GAID:849 xref: MA:0001181 xref: MESH:D008160 xref: NCIT:C52805 xref: SCTID:181049003 xref: UMLS:C0024093 {source="ncithesaurus:Lumbosacral_Plexus"} xref: VHOG:0000926 xref: Wikipedia:Lumbosacral_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001813 ! spinal nerve plexus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray822.png" xsd:anyURI [Term] id: UBERON:0001816 name: autonomic nerve plexus def: "A nerve plexus that is part of an autonomic nervous system [Automatically generated definition]." [OBOL:automatic] synonym: "autonomic plexus" EXACT [] synonym: "plexus autonomicus" EXACT OMO:0003011 [FMA:5910, FMA:TA] synonym: "plexus nervosus visceralis" EXACT OMO:0003011 [FMA:5910, FMA:TA] synonym: "plexus visceralis" EXACT OMO:0003011 [FMA:5910, FMA:TA] synonym: "visceral nerve plexus" EXACT [] synonym: "visceral plexus" EXACT [] xref: EMAPA:18224 xref: FMA:5910 xref: MA:0000221 xref: SCTID:362482000 is_a: UBERON:0001810 ! nerve plexus relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0001817 name: lacrimal gland def: "The lacrimal glands are paired almond-shaped glands, located in or near the orbital region, that secrete the aqueous layer of the tear film.[WP]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lacrimal_gland] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "glandula lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_gland] synonym: "glandula praeorbitalis" RELATED SENSU [NCBITaxon:91561, Wikipedia:Preorbital_gland] synonym: "lacrimal-preorbital gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "preorbital gland" RELATED SENSU [NCBITaxon:91561, Wikipedia:Preorbital_gland] synonym: "tear gland" RELATED [BTO:0000044] xref: BTO:0000044 xref: CALOHA:TS-0512 xref: EFO:0001389 xref: EMAPA:35463 xref: EV:0100339 xref: FMA:59101 xref: MA:0001296 xref: NCIT:C12346 xref: SCTID:181147003 xref: UMLS:C0022907 {source="ncithesaurus:Lacrimal_Gland"} xref: VHOG:0001476 xref: Wikipedia:Lacrimal_gland xref: Wikipedia:Preorbital_gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015154 ! lateral gland of orbital region relationship: develops_from UBERON:0022284 ! lacrimal gland bud relationship: never_in_taxon NCBITaxon:8570 {source="PMID:7559104"} relationship: part_of UBERON:0001750 ! lacrimal apparatus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png" xsd:anyURI property_value: external_definition "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands." xsd:string {source="FMA:59101"} property_value: external_definition "The preorbital gland is a paired exocrine gland found in many species of hoofed animals, which is homologous to the lacrimal gland found in humans. These glands are trenchlike slits of dark blue to black, nearly bare skin extending from the medial canthus of each eye. They are lined by a combination of sebaceous and sudoriferous glands, and they produce secretions which contain pheromones and other semiochemical compounds. Ungulates frequently deposit these secretions on twigs and grass as a means of communication with other animals. The preorbital gland serves different roles in different species. Pheromone-containing secretions from the preorbital gland may serve to establish an animal's dominance (especially in preparation for breeding), mark its territory, or simply to produce a pleasurable sensation to the animal. Because of its critical role in scent marking, the preorbital gland is usually considered as a type of scent gland. A further function of these glands may be to produce antimicrobial compounds against skin pathogens. Antimicrobial compounds found in these glands may be biosynthesized by the animal itself, or by microorganisms that live in these glands[Wikipedia:Preorbital_gland]." xsd:string {source="Wikipedia:Preorbital_gland"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "In humans, they are situated in the upper, outer portion of each orbit" xsd:string property_value: taxon_notes "Innervation is highly complex and species-specific" xsd:string [Term] id: UBERON:0001818 name: tarsal gland def: "A modified lobulated sebaceous gland at the rim of an eyelid, responsible for the supply of meibum." [ISBN:0123813611, PMID:20664693, Wikipedia:Meibomian_gland] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "gland of Meibom" EXACT [] synonym: "glandula tarsales" EXACT [] synonym: "Meibomian gland" EXACT [MA:0001249] synonym: "palpebral gland" RELATED [MA:0001249] synonym: "tarsoconjunctival gland" RELATED [BTO:0004165] xref: BTO:0004165 xref: FMA:59104 xref: GAID:899 xref: MA:0001249 xref: MESH:D008537 xref: NCIT:C33075 xref: SCTID:280585003 xref: UMLS:C0025181 {source="ncithesaurus:Meibomian_Gland"} xref: Wikipedia:Meibomian_gland is_a: UBERON:0013231 ! sebaceous gland of eyelid is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland relationship: part_of UBERON:0004772 ! eyelid tarsus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png" xsd:anyURI property_value: development_notes "in mice, meibomian gland development is initiated around E18.5 with the formation of an epithelial placode and mesenchymal condensation, similar to that observed in hair follicle development; invagination of the epithelium into the developing mesenchyme then continues from birth to about P3 with initial branching of the epithelial cord detected at P5; by P8 the developing meibomian gland shows extensive ductal branching and the formation of distinct acini with mature meibomian glands present by P15 or eyelid opening[PMID:20664693]" xsd:string [Term] id: UBERON:0001819 name: palpebral fissure def: "Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]." [Wikipedia:Palpebral_fissure] subset: pheno_slim subset: uberon_slim synonym: "rima palpebrarum" RELATED OMO:0003011 [Wikipedia:Palpebral_fissure] xref: FMA:59110 xref: MA:0001266 xref: SCTID:280576003 xref: Wikipedia:Palpebral_fissure is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0000019 ! camera-type eye property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png" xsd:anyURI [Term] id: UBERON:0001820 name: sweat gland def: "Any of the coil glands of the skin that secrete sweat." [ISBN:0-683-40008-8, MP:0000674] subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "glandula sudorifera" RELATED [BTO:0001331] synonym: "sudoriferous gland" RELATED [BTO:0001331] synonym: "sudoriparous gland" RELATED [BTO:0001331] xref: BTO:0001331 xref: CALOHA:TS-0993 xref: EMAPA:35844 xref: EV:0100160 xref: FMA:59152 xref: GAID:943 xref: MA:0000150 xref: MESH:D013545 xref: NCIT:C33712 xref: SCTID:361700009 xref: UMLS:C0038989 {source="ncithesaurus:Sweat_Gland"} xref: VHOG:0001467 xref: Wikipedia:Sweat_gland is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0019319 ! exocrine gland of integumental system relationship: develops_from UBERON:0005089 {evidence="definitional"} ! sweat gland placode relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg" xsd:anyURI property_value: editor_note "TODO - check if all sweat glands are epidermal - see EMAPA:29743" xsd:string property_value: external_definition "A gland that secretes sweat, found in the dermis or subcutaneous tissue, opening by a duct on the body surface. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001467", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/sweat+gland"} property_value: homology_notes "Sweat glands (also called sudoriferous glands) are unique to mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001467", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.101", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation" xsd:string [Term] id: UBERON:0001821 name: sebaceous gland def: "A holocrine gland that secretes sebum into the hair follicles, or in hairless areas into ducts.[MP]." [MP:0000647, Wikipedia:Sebaceous_gland] subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "glandula sebacea" RELATED OMO:0003011 [Wikipedia:Sebaceous_gland] synonym: "glandula sebaceae" RELATED [BTO:0001980] synonym: "sebaceous follicle" RELATED [BTO:0001980] xref: BTO:0001980 xref: CALOHA:TS-2384 xref: EMAPA:35754 xref: EV:0100161 xref: FMA:59160 xref: GAID:900 xref: MA:0002565 xref: MESH:D012627 xref: NCIT:C33519 xref: SCTID:361697005 xref: UMLS:C0036505 {source="ncithesaurus:Sebaceous_Gland"} xref: VHOG:0001468 xref: Wikipedia:Sebaceous_gland is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0012344 {source="Wikipedia"} ! holocrine gland is_a: UBERON:0019319 ! exocrine gland of integumental system relationship: develops_from UBERON:0005088 {evidence="definitional"} ! sebaceous gland placode relationship: part_of UBERON:0011932 ! pilosebaceous unit relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "sebaceous glands are also found in glabrous areas of eyelids, nose, penis, labia minora and nipples, and do not always secrete into hair follices. This causes some confusion in classification. In addition some structures, such as preputial glands are sometimes called 'modified' sebaceous glands, implying a non-subclass relationship. we follow MP and MA in keeping this class generic and creating a distinct subclass for sebaceuous glands of the skin. The FMA class may be better placed under this subclass." xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/49/HairFollicle.png" xsd:anyURI property_value: external_definition "Any of the numerous holocrine glands in the dermis that empty into a hair follicle and produce and secrete sebum. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001468", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/sebaceous+gland"} property_value: homology_notes "Sebaceous glands are also limited to mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001468", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.102", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001822 name: orbital septum def: "A membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum] subset: organ_slim subset: uberon_slim synonym: "septum orbitale" RELATED OMO:0003011 [Wikipedia:Orbital_septum] xref: EMAPA:37609 {source="MA:th"} xref: FMA:59328 xref: MA:0001259 xref: SCTID:368859002 xref: Wikipedia:Orbital_septum is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: part_of UBERON:0004772 ! eyelid tarsus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Gray891.png" xsd:anyURI [Term] id: UBERON:0001823 name: nasal cartilage def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage] subset: pheno_slim subset: uberon_slim synonym: "cartilage of nose" EXACT [] xref: CALOHA:TS-0655 xref: EMAPA:37681 {source="MA:th"} xref: FMA:59502 xref: MA:0001883 xref: MESH:D055171 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C49593 xref: SCTID:278941001 xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"} xref: Wikipedia:Nasal_cartilage is_a: UBERON:0002418 {source="MA"} ! cartilage tissue is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0000004 ! nose property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png" xsd:anyURI [Term] id: UBERON:0001824 name: mucosa of larynx def: "The mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261] synonym: "laryngeal mucosa" EXACT [] synonym: "laryngeal mucous membrane" RELATED [EMAPA:18334] synonym: "larynx mucosa" EXACT [] synonym: "larynx mucosa of organ" EXACT [OBOL:automatic] synonym: "larynx mucous membrane" EXACT [OBOL:automatic] synonym: "larynx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of larynx" EXACT [OBOL:automatic] synonym: "mucous membrane of larynx" EXACT [] synonym: "organ mucosa of larynx" EXACT [OBOL:automatic] synonym: "tunica mucosa laryngis" EXACT OMO:0003011 [FMA:59662, FMA:TA] xref: EMAPA:18334 xref: FMA:59662 xref: GAID:301 xref: MA:0001766 xref: MESH:D007820 xref: NCIT:C49246 xref: SCTID:361940006 xref: UMLS:C0023053 {source="ncithesaurus:Laryngeal_Mucosa"} is_a: UBERON:0000379 ! tracheal mucosa relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001825 name: paranasal sinus def: "The paired air-filled cavities surrounded by the bones of the face that are lined by mucous membranes and are continuous with the nasal cavity." [ISBN:0-683-40008-8, MP:0002240] subset: pheno_slim subset: uberon_slim synonym: "nasal sinus" RELATED [GAID:355] synonym: "sinus" BROAD [] xref: CALOHA:TS-2082 xref: EHDAA:6489 xref: EMAPA:35662 xref: EV:0100038 xref: FMA:59679 xref: GAID:355 xref: MA:0000431 xref: MESH:D010256 xref: NCIT:C12763 xref: SCTID:181203001 xref: UMLS:C0030471 {source="ncithesaurus:Paranasal_Sinus"} xref: Wikipedia:Paranasal_sinuses is_a: UBERON:0002553 ! anatomical cavity relationship: fma_set_term FMA:76587 relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003129 ! skull property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg" xsd:anyURI property_value: development_notes "Arise as epithelial lined diverticula of the lining of the nasal cavity. The extent of sinus development varies with species, most of the development occurs postnatally" xsd:string [Term] id: UBERON:0001826 name: nasal cavity mucosa def: "The mucous membrane that lines the nasal cavity[MP]." [MP:0002238] subset: pheno_slim synonym: "mucosa of nose" EXACT [FMA:59684] synonym: "mucous membrane of nose" EXACT [FMA:59684] synonym: "nasal mucosa" RELATED [] synonym: "tunica mucosa nasalis" EXACT [] synonym: "tunica mucosa nasi" EXACT OMO:0003011 [FMA:59684, FMA:TA] xref: BTO:0000912 xref: CALOHA:TS-0657 xref: EMAPA:36026 xref: FMA:59684 xref: GAID:302 xref: SCTID:310211009 xref: Wikipedia:Mucous_membrane_of_nose is_a: UBERON:0000379 ! tracheal mucosa relationship: part_of UBERON:0015788 ! olfactory apparatus chamber property_value: editor_note "TODO - check lining vs part of. split olfactory and nasal mucosa?" xsd:string [Term] id: UBERON:0001827 name: secretion of lacrimal gland def: "Aqueous substance secreted by the lacrimal gland." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Tear] subset: uberon_slim synonym: "lacrimal fluid" EXACT [] synonym: "lacrimal gland secretion" EXACT [] synonym: "lacrimal secretion" EXACT [] synonym: "tear" EXACT [FMA:59756] synonym: "tear fluid" RELATED [BTO:0001499] synonym: "tears" EXACT OMO:0003004 [] xref: BTO:0001499 xref: CALOHA:TS-1016 xref: EMAPA:36537 xref: ENVO:02000034 xref: FMA:59756 xref: GAID:1173 xref: galen:Tear xref: galen:Tears xref: MA:0002508 xref: MESH:D013666 xref: NCIT:C33739 xref: UMLS:C0039409 {source="ncithesaurus:Tear"} xref: Wikipedia:Tear is_a: UBERON:0000456 ! secretion of exocrine gland [Term] id: UBERON:0001828 name: gingiva def: "The fibrous investing tissue, covered by keratinized epithelium, that immediately surrounds a tooth and is contiguous with its periodontal ligament and with the mucosal tissues of the mouth[Glossary of Periodontal Terms 2001]." [ISBN:0013002015, Wikipedia:Gingiva] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "gingival mucosa" RELATED [] synonym: "gum" EXACT [FMA:59762] synonym: "gum tissue" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "gums" EXACT [] xref: BTO:0000519 xref: CALOHA:TS-2074 xref: EFO:0001925 xref: EMAPA:35945 xref: EV:0100064 xref: FMA:59762 xref: GAID:1257 xref: galen:Gingiva xref: MA:0000342 xref: MESH:D005881 xref: NCIT:C32677 xref: SCTID:181224006 xref: UMLS:C0017562 {source="ncithesaurus:Gingiva"} xref: VHOG:0001269 xref: Wikipedia:Gingiva is_a: UBERON:0003729 ! mouth mucosa relationship: part_of UBERON:0003729 {source="Carranza"} ! mouth mucosa relationship: part_of UBERON:0011595 ! jaw region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg" xsd:anyURI property_value: editor_note "FMA has a 3-level breakdown of jaws into: region, jaw (skeleton+gums), skeleton." xsd:string property_value: has_relational_adjective "gingival" xsd:string [Term] id: UBERON:0001829 name: major salivary gland def: "One of the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792] subset: human_reference_atlas subset: organ_slim subset: pheno_slim xref: FMA:59788 xref: galen:MajorSalivaryGland xref: MA:0002478 xref: NCIT:C12999 xref: SCTID:303049006 xref: UMLS:C0930553 {source="ncithesaurus:Major_Salivary_Gland"} is_a: UBERON:0001044 ! saliva-secreting gland is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "There are 3 pairs of major salivary glands in human and mouse" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0001830 name: minor salivary gland def: "One of the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]." [MP:0003791, Wikipedia:Salivary_gland#Minor_Salivary_Glands] comment: There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for von Ebner's glands) and have many functions such as coating the oral cavity with saliva[WP]. subset: human_reference_atlas subset: organ_slim subset: pheno_slim xref: EMAPA:35574 xref: FMA:59789 xref: GAID:940 xref: galen:MinorSalivaryGland xref: MA:0002479 xref: MESH:D012470 xref: NCIT:C33129 xref: SCTID:362177001 xref: UMLS:C0036099 {source="ncithesaurus:Minor_Salivary_Gland"} xref: Wikipedia:Salivary_gland#Minor_Salivary_Glands is_a: UBERON:0001044 ! saliva-secreting gland relationship: part_of UBERON:0005334 ! oral lamina propria relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001831 name: parotid gland def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [Wikipedia:Parotid_gland] comment: The mouse parotid, exorbital lacrimal gland and exocrine pancreas have similar histological appearances[ISBN:0123813611] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "glandula parotidea" RELATED OMO:0003011 [Wikipedia:Parotid_gland] synonym: "parotid" EXACT [] xref: AAO:0010095 xref: BTO:0001004 xref: CALOHA:TS-0748 xref: EFO:0002558 xref: EMAPA:18537 xref: EV:0100060 xref: FMA:59790 xref: GAID:938 xref: galen:ParotidGland xref: MA:0001585 xref: MESH:D010306 xref: NCIT:C12427 xref: SCTID:181234002 xref: UMLS:C0030580 {source="ncithesaurus:Parotid_Gland"} xref: VHOG:0000308 xref: Wikipedia:Parotid_gland is_a: UBERON:0000409 ! serous gland is_a: UBERON:0001829 ! major salivary gland is_a: UBERON:0012102 ! buccal salivary gland relationship: develops_from UBERON:0008801 ! parotid gland primordium relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg" xsd:anyURI property_value: external_definition "A mammalian salivary gland located caudal to the ear. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-22, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000308", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The most common oral glands in mammals are the salivary glands. There are usually three primary pairs of salivary glands, named for their approximate positions: mandibular (submandibular or submaxillary), sublingual, and parotid.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000308", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.525", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001832 name: sublingual gland def: "The small mucin-producing salivary glands in the floor of the mouth beneath the tongue, anterior to the submandibular gland." [MGI:hdene, MP:0004035] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ductus sublingualis" EXACT [] synonym: "glandula sublingualis" RELATED OMO:0003011 [Wikipedia:Sublingual_gland] synonym: "Rivinus gland" RELATED [BTO:0001315] synonym: "Rivinus' gland" EXACT [] synonym: "sublingual salivary gland" RELATED [] synonym: "submaxillary gland" RELATED [MA:0001589] xref: BTO:0001315 xref: CALOHA:TS-0987 xref: EMAPA:18809 xref: EV:0100062 xref: FMA:59791 xref: GAID:941 xref: MA:0001588 xref: MESH:D013361 xref: NCIT:C12234 xref: SCTID:362176005 xref: UMLS:C0038553 {source="ncithesaurus:Sublingual_Salivary_Gland"} xref: VHOG:0000363 xref: Wikipedia:Sublingual_gland is_a: UBERON:0001829 {source="FMA"} ! major salivary gland relationship: develops_from UBERON:0006297 ! sublingual gland primordium relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png" xsd:anyURI property_value: external_definition "One of a pair of small salivary glands situated under the mucous membrane of the floor of the mouth, beneath the tongue. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000363", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/sublingual+gland"} property_value: homology_notes "Most mammals have well-developed parotid, mandibular, and sublingual glands.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000363", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.553", source="http://bgee.unil.ch/"} property_value: taxon_notes "Single lobed in mouse; largest acini of the 3 rodent salivary glands. In human and mouse, secretions are predominantly mucinous" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0001833 name: lip def: "One of the two fleshy folds which surround the opening of the mouth." [http://www.medterms.com/script/main/art.asp?articlekey=9458, Wikipedia:Lip] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "labia oris" RELATED OMO:0003011 [Wikipedia:Lip] synonym: "lips" RELATED [] xref: BTO:0001647 xref: CALOHA:TS-0558 xref: EMAPA:32839 xref: FMA:59816 xref: GAID:76 xref: galen:Lip xref: MA:0000343 xref: MESH:D008046 xref: NCIT:C12220 xref: SCTID:181221003 xref: TAO:0007006 xref: UMLS:C0023759 {source="ncithesaurus:Lip"} xref: VHOG:0000677 xref: Wikipedia:Lip xref: ZFA:0007006 is_a: UBERON:0003102 {source="ZFA"} ! surface structure relationship: never_in_taxon NCBITaxon:8782 relationship: part_of UBERON:0000165 {source="BTO", source="FMA-implicit", source="VHOG", source="ZFA"} ! mouth relationship: part_of UBERON:0001456 ! face property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/90/Lips.JPG" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg" xsd:anyURI property_value: external_definition "Surface structure that is one of the two fleshy folds surrounding the opening of the mouth.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0007006", ontology="TAO", source="ZFIN:curator", source="http//:www.medterms.com/script/main/art.asp?articlekey=9458"} property_value: has_relational_adjective "labial" xsd:string [Term] id: UBERON:0001834 name: upper lip alt_id: UBERON:0003391 def: "Lip that covers the upper portion of the mouth.[TAO]." [TAO:0001970, Wikipedia:Upper_lip] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "labium superius oris" RELATED OMO:0003011 [Wikipedia:Upper_lip] synonym: "upper jaw lip" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:17925 xref: FMA:59817 xref: MA:0000919 xref: SCTID:245776003 xref: TAO:0001970 xref: VHOG:0001750 xref: Wikipedia:Upper_lip xref: ZFA:0005226 is_a: UBERON:0001833 ! lip relationship: immediate_transformation_of UBERON:0011592 ! future upper lip relationship: part_of UBERON:0001709 ! upper jaw region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg" xsd:anyURI property_value: external_definition "Lip that covers the lower portion of the mouth. [ZFIN:Curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001750", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Lip that covers the upper portion of the mouth.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001970", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0001835 name: lower lip alt_id: UBERON:0003392 def: "Lip that covers the lower portion of the mouth.[TAO]." [TAO:0002060, Wikipedia:Lower_lip] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "labium inferius oris" RELATED OMO:0003011 [Wikipedia:Lower_lip] synonym: "lower jaw lip" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:17909 xref: FMA:59818 xref: MA:0000921 xref: NCIT:C94572 xref: SCTID:245777007 xref: TAO:0002060 xref: UMLS:C0458583 {source="ncithesaurus:Lower_Lip"} xref: Wikipedia:Lower_lip xref: ZFA:0005225 is_a: UBERON:0001833 ! lip relationship: develops_from UBERON:0011596 ! future lower lip relationship: part_of UBERON:0001710 ! lower jaw region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg" xsd:anyURI property_value: external_definition "Lip that covers the lower portion of the mouth.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002060", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0001836 name: saliva def: "A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions." [GO:0046541, Wikipedia:Saliva] subset: uberon_slim synonym: "sailva normalis" RELATED OMO:0003011 [Wikipedia:Saliva] synonym: "saliva atomaris" RELATED OMO:0003011 [Wikipedia:Saliva] synonym: "saliva molecularis" RELATED OMO:0003011 [Wikipedia:Saliva] synonym: "salivary gland secretion" EXACT [FMA:59862] xref: BTO:0001202 xref: CALOHA:TS-0891 xref: EMAPA:36536 xref: ENVO:02000036 xref: FMA:59862 xref: GAID:1167 xref: galen:Saliva xref: MA:0002507 xref: MAT:0000444 xref: MESH:D012463 xref: NCIT:C13275 xref: UMLS:C0036087 {source="ncithesaurus:Saliva"} xref: Wikipedia:Saliva is_a: UBERON:0000456 ! secretion of exocrine gland property_value: has_relational_adjective "salivary" xsd:string property_value: taxon_notes "We classify a wide variety of not necessarily homologous fluids here. In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin" xsd:string {source="GO"} [Term] id: UBERON:0001837 name: duct of salivary gland def: "The duct of a salivary gland." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "salivary duct" EXACT [] synonym: "salivary gland duct" EXACT [] synonym: "secretory duct" RELATED [BTO:0005115] xref: BTO:0005115 xref: EMAPA:35750 xref: FMA:59908 xref: GAID:939 xref: MA:0001586 xref: MESH:D018987 xref: NCIT:C32486 xref: SCTID:181238004 xref: Wikipedia:Salivary_duct is_a: UBERON:0000025 ! tube is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0001044 ! saliva-secreting gland [Term] id: UBERON:0001838 name: sublingual duct def: "A duct of a sublingual gland." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim xref: BTO:0004558 xref: EMAPA:36564 xref: FMA:59983 xref: MA:0002699 xref: SCTID:281000009 xref: Wikipedia:Sublingual_duct is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001832 ! sublingual gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001839 name: bony labyrinth def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth] comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved. subset: pheno_slim subset: uberon_slim synonym: "labyrinthus osseus" RELATED OMO:0003011 [Wikipedia:Bony_labyrinth] synonym: "osseous labyrinth" EXACT [] synonym: "osseus labyrinth" RELATED [] xref: AAO:0011078 xref: BTO:0004685 xref: CALOHA:TS-2080 xref: EMAPA:36580 xref: EV:0100362 xref: FMA:60179 xref: MA:0000238 xref: NCIT:C33227 xref: SCTID:279727008 xref: UMLS:C0458699 {source="ncithesaurus:Osseous_Labyrinth"} xref: VHOG:0001219 xref: Wikipedia:Bony_labyrinth xref: XAO:0000193 is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001694 {source="FMA", source="MA"} ! petrous part of temporal bone relationship: part_of UBERON:0001846 {source="FMA"} ! internal ear relationship: part_of UBERON:0004681 ! vestibular system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray920.png" xsd:anyURI [Term] id: UBERON:0001840 name: semicircular canal def: "One of three half-circular, interconnected tubes located inside each ear[WP]." [Wikipedia:Semicircular_canal] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "canalis semicircularis" RELATED OMO:0003011 [Wikipedia:Semicircular_canal] synonym: "ductus semicirculares" RELATED OMO:0003004 [BTO:0003383, FMA:71880, FMA:TA] synonym: "scc" RELATED [TAO:0000431] synonym: "semicircular canals" EXACT OMO:0003004 [TAO:0000431] synonym: "semicircular ducts" RELATED OMO:0003004 [XAO:0000198] xref: AAO:0011098 xref: BTO:0003383 xref: CALOHA:TS-2164 xref: EMAPA:32832 xref: EV:0100365 xref: FMA:60186 xref: GAID:776 xref: MA:0000249 xref: MESH:D012665 xref: NCIT:C33527 xref: SCTID:279757004 xref: TAO:0000431 xref: UMLS:C0036622 {source="ncithesaurus:Semicircular_Canal"} xref: VHOG:0001144 xref: Wikipedia:Semicircular_canal xref: XAO:0000198 xref: ZFA:0000431 is_a: UBERON:0000025 {source="GO"} ! tube relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png" xsd:anyURI property_value: external_definition "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000431", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal" xsd:string {external_ontology="MA"} property_value: function_notes "detects angular acceleration" xsd:string property_value: homology_notes "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. These ducts are sometimes called canals, but technically the term semicircular canal applies to the spaces in the osseus labyrinth in which the semicircular ducts lie.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001144", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001841 name: anterior semicircular canal subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior semicircular canals" RELATED [] synonym: "anterior semicircular duct" RELATED [] synonym: "canalis semircularis posterior" RELATED [AAO:0000058] synonym: "rostral vertical semicircular canal" RELATED [] synonym: "superior semicircular canal" EXACT [] xref: AAO:0000058 xref: EHDAA2:0001959 xref: EHDAA:7802 xref: EMAPA:17299 xref: FMA:60187 xref: MA:0001207 xref: NCIT:C33695 xref: SCTID:279764002 xref: TAO:0000314 xref: UMLS:C1288332 {source="ncithesaurus:Superior_Semicircular_Canal"} xref: Wikipedia:Anterior_semicircular_canal xref: ZFA:0000314 is_a: UBERON:0001840 ! semicircular canal property_value: axiom_lost_from_external_ontology "relationship loss: develops_from anterior semicircular canal primordium (TAO:0000469)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000314", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png" xsd:anyURI property_value: external_definition "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000314", ontology="TAO", source="ZFIN:curator"} property_value: function_notes "detects angular acceleration" xsd:string [Term] id: UBERON:0001842 name: posterior semicircular canal def: "The posterior semicircular canal is a part of the vestibular system and detects rotations of the head in the sagittal plane." [Wikipedia:Posterior_semicircular_canal] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "canalis semicircularis posterior" RELATED OMO:0003011 [Wikipedia:Posterior_semicircular_canal] synonym: "caudal vertical semicircular canal" RELATED [] synonym: "pars superior of labyrinth" RELATED [AAO:0000420] synonym: "posterior semicircular canals" RELATED [] synonym: "posterior semicircular duct" RELATED [] xref: AAO:0000420 xref: EHDAA2:0001489 xref: EHDAA:7796 xref: EMAPA:17296 xref: FMA:60190 xref: MA:0001209 xref: NCIT:C33378 xref: SCTID:279762003 xref: TAO:0000262 xref: UMLS:C0229454 {source="ncithesaurus:Posterior_Semicircular_Canal"} xref: Wikipedia:Posterior_semicircular_canal xref: ZFA:0000262 is_a: UBERON:0001840 ! semicircular canal property_value: axiom_lost_from_external_ontology "relationship loss: develops_from posterior semicircular canal primordium (TAO:0000412)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000262", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png" xsd:anyURI property_value: editor_note "verify AAO" xsd:string property_value: external_definition "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000262", ontology="TAO", source="ZFIN:curator"} property_value: function_notes "detects angular acceleration" xsd:string [Term] id: UBERON:0001843 name: lateral semicircular canal subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "horizontal semicircular canal" RELATED [] synonym: "lateral semicircular canals" RELATED [] synonym: "lateral semicircular duct" RELATED [] xref: EHDAA2:0000920 xref: EHDAA:7790 xref: EMAPA:17821 xref: FMA:60193 xref: MA:0001208 xref: SCTID:279761005 xref: TAO:0000220 xref: Wikipedia:Lateral_semicircular_canal xref: ZFA:0000220 is_a: UBERON:0001840 ! semicircular canal property_value: axiom_lost_from_external_ontology "relationship loss: develops_from lateral semicircular canal primordium (TAO:0000232)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000220", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png" xsd:anyURI property_value: external_definition "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000220", ontology="TAO", source="ZFIN:curator"} property_value: function_notes "detects angular acceleration" xsd:string [Term] id: UBERON:0001844 name: cochlea def: "The spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. [WP,modified]." [ISBN:0-683-40008-8, MP:0000031, Wikipedia:Cochlea] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cochleae" RELATED OMO:0003004 [] synonym: "cochlear duct" RELATED [] synonym: "cochlear organ" RELATED [BTO:0000267] synonym: "cochlear part of bony labyrinth" EXACT [] synonym: "lagena" EXACT SENSU [XAO:0000197] synonym: "lagenas" RELATED OMO:0003004 [ZFA:0000374] xref: AAO:0000253 xref: BIRNLEX:1190 xref: BTO:0000267 xref: CALOHA:TS-0151 xref: EFO:0000357 xref: EMAPA:17597 xref: EV:0100363 xref: FMA:60201 xref: GAID:724 xref: MA:0000240 xref: MAT:0000144 xref: MESH:D003051 xref: MIAA:0000144 xref: NCIT:C12395 xref: NIFSTD_RETIRED:birnlex_883 xref: SCTID:181187008 xref: TAO:0000374 xref: UMLS:C0009195 {source="ncithesaurus:Cochlea", source="BIRNLEX:1190"} xref: UMLS:C1278895 {source="BIRNLEX:1190"} xref: VHOG:0000691 xref: Wikipedia:Cochlea xref: XAO:0000197 xref: ZFA:0000374 is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001839 {source="FMA", source="VHOG", source="XAO", source="ncit"} ! bony labyrinth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg" xsd:anyURI property_value: external_definition "A spiral-shaped cavity in the petrous portion of the temporal bone of the inner ear, containing the nerve endings essential for hearing and forming one of the divisions of the labyrinth. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000691", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cochlea"} property_value: external_ontology_notes "sources vary in connection to bony labyrinth" xsd:string {external_ontology="XAO"} property_value: has_relational_adjective "cochlear" xsd:string property_value: homology_notes "Because achieving high sensitivity is generally advantageous for auditory organs, it is not surprising that evidence for cochlear amplification is also seen in nonmammals. Spontaneous otoacoustic emissions (SOAEs) are narrow-band sound signals emitted from the inner ear, and it is generally assumed that their energy derives from the hair-cell molecular motors underlying cochlear amplification. However, all terrestrial vertebrates studied so far (including amphibians) show very similar SOAEs. The most parsimonious explanation for the universality of this phenomena is that some kind of amplifying mechanism is at least as old as land vertebrates themselves.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000691", ontology="VHOG", source="DOI:10.1016/S0959-4388(98)80033-0 Manley GA, Koeppl C, Phylogenetic development of the cochlea and its innervation. Current Opinion in Neurobiology (1998)", source="http://bgee.unil.ch/"} property_value: taxon_notes "The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: 'In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)'" xsd:string property_value: taxon_notes "the cochlea is coiled in most mammals, monotremes being the exceptions." xsd:string [Term] id: UBERON:0001845 name: perilymph def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]." [FMA:FMA, Wikipedia:Perilymph] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "liquor cotunnii" RELATED OMO:0003011 [Wikipedia:Perilymph] synonym: "perilympha" RELATED [Wikipedia:Perilymph] xref: EMAPA:36549 xref: FMA:60908 xref: GAID:1185 xref: MA:0002529 xref: MESH:D010498 xref: NCIT:C33297 xref: TAO:0005413 xref: UMLS:C0031059 {source="ncithesaurus:Perilymph"} xref: Wikipedia:Perilymph xref: ZFA:0005413 is_a: UBERON:0006586 ! otolymph [Term] id: UBERON:0001846 name: internal ear def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "auris interna" RELATED [BTO:0000630] synonym: "inner ear" EXACT [] synonym: "labyrinth" RELATED [] synonym: "otocyst" RELATED [] xref: AAO:0000238 xref: BIRNLEX:1196 xref: BTO:0000630 xref: CALOHA:TS-0478 xref: EFO:0001363 xref: EHDAA2:0000831 xref: EHDAA:504 xref: EMAPA:16194 xref: EV:0100361 xref: FMA:60909 xref: GAID:871 xref: galen:InnerEar xref: MA:0000237 xref: MAT:0000145 xref: MESH:D007758 xref: MIAA:0000145 xref: NCIT:C12499 xref: SCTID:181189006 xref: SCTID:304982002 xref: TAO:0000217 xref: UMLS:C0022889 {source="ncithesaurus:Internal_Ear", source="BIRNLEX:1196"} xref: UMLS:C1268973 {source="BIRNLEX:1196"} xref: VHOG:0000284 xref: Wikipedia:Internal_ear xref: XAO:0000192 xref: ZFA:0000217 is_a: UBERON:0034921 ! multi organ part structure relationship: develops_from UBERON:0003051 {evidence="definitional"} ! ear vesicle relationship: part_of UBERON:0001690 ! ear property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png" xsd:anyURI property_value: external_definition "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000217", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000284", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.366", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001847 name: lobule of pinna def: "The soft lower part of the external ear, projecting below the antitragus." [Wikipedia:Ear_lobe] subset: pheno_slim subset: uberon_slim synonym: "auricular lobule" EXACT [] synonym: "ear lobe" EXACT [] synonym: "ear lobule" RELATED [] synonym: "earlobe" EXACT [] synonym: "lobe of ear" EXACT [] synonym: "lobule of auricle" RELATED [] synonym: "lobule of auricle of ear" EXACT [] synonym: "lobulus auriculae" EXACT OMO:0003011 [FMA:60984, FMA:TA] synonym: "pinna lobule" EXACT [] xref: FMA:60984 xref: MA:0002468 xref: NCIT:C32999 xref: SCTID:362544006 xref: UMLS:C0229315 {source="ncithesaurus:Lobule_of_the_Auricle"} xref: Wikipedia:Ear_lobe is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001757 ! pinna property_value: structure_notes "The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function." xsd:string {source="WP,unvetted"} [Term] id: UBERON:0001848 name: auricular cartilage def: "Cartilage of the pinna and much of the external ear canal." [http://medical-dictionary.thefreedictionary.com/auricular+cartilage] subset: pheno_slim synonym: "cartilage of pinna" EXACT [FMA:61013] synonym: "pinna cartilage" EXACT [] xref: EMAPA:35158 xref: FMA:61013 xref: MA:0001227 xref: SCTID:279627003 is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001757 ! pinna relationship: part_of UBERON:0001867 ! cartilage of external ear [Term] id: UBERON:0001849 name: membranous labyrinth alt_id: UBERON:0010113 def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. The membranous labyrinth is lodged within the bony labyrinth and has the same general form; it is, however, considerably smaller and is partly separated from the bony walls by a quantity of fluid, the perilymph.[FMA, WP]." [FMA:61022, Wikipedia:Membranous_labyrinth] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "labyrinthus membranaceus" EXACT OMO:0003011 [Wikipedia:Membranous_labyrinth] xref: AAO:0011060 xref: EHDAA2:0000899 xref: EHDAA:4698 xref: EV:0100367 xref: FMA:61022 xref: MA:0000242 xref: NCIT:C33090 xref: SCTID:263790009 xref: UMLS:C0458700 {source="ncithesaurus:Membranous_Labyrinth"} xref: VHOG:0000729 xref: Wikipedia:Membranous_labyrinth xref: XAO:0000194 is_a: UBERON:0000062 ! organ relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0001846 {source="FMA", source="MA"} ! internal ear property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png" xsd:anyURI property_value: external_definition "A system of communicating epithelial sacs and ducts within the bony labyrinth, containing the endolymph. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000729", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/membranous+labyrinth"} property_value: external_ontology_notes "inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the EMAPA term 'labyrinth' belong, we place them here for now" xsd:string {external_ontology="EMAPA"} property_value: homology_notes "The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000729", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.366", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001850 name: lacrimal drainage system def: "A collection of channels that connects the conjunctival sac with the nasal cavity, encompassing the lacrimal ducts, the lacrimal sac and the naso-lacrimal duct." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "lacrimal duct" RELATED [FMA:61063, MA:0001295] synonym: "tear duct" RELATED [MA:0001295] xref: EMAPA:19245 xref: FMA:61063 xref: MA:0001295 xref: SCTID:280426002 is_a: UBERON:0000062 {source="FMA"} ! organ is_a: UBERON:0004111 ! anatomical conduit relationship: never_in_taxon NCBITaxon:8459 {source="PMID:7559104"} relationship: part_of UBERON:0001750 {source="FMA"} ! lacrimal apparatus property_value: taxon_notes "chelonians lack a lacrimal duct, and lacrimal/harderian secretions remain in or spill from the conjunctival sac[PMID:7559104]" xsd:string [Term] id: UBERON:0001851 name: cortex def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)] subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "cortex" EXACT [FMA:61109] synonym: "cortex of organ" EXACT [] xref: EFO:0000383 xref: EHDAA:9344 xref: FMA:61109 xref: galen:Cortex xref: Wikipedia:Cortex_(anatomy) is_a: UBERON:0000064 ! organ part property_value: external_ontology_notes "this class is used more generically than in FMA, and includes e.g. cortex of hair" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "cortical" xsd:string [Term] id: UBERON:0001852 name: endolymph def: "Transudate contained within the membranous labyrinth.[FMA]." [FMA:61112, Wikipedia:Endolymph] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "endolympha" RELATED OMO:0003011 [Wikipedia:Endolymph] synonym: "endolymphatic fluid" EXACT [] synonym: "Scarpa's fluid" RELATED [Wikipedia:Endolymph] xref: EMAPA:36548 xref: FMA:61112 xref: GAID:1184 xref: MA:0002528 xref: MESH:D004710 xref: NCIT:C32513 xref: TAO:0005414 xref: UMLS:C0014166 {source="ncithesaurus:Endolymph"} xref: Wikipedia:Endolymph xref: ZFA:0005414 is_a: UBERON:0006586 ! otolymph property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png" xsd:anyURI property_value: has_relational_adjective "otolymphic" xsd:string [Term] id: UBERON:0001853 name: utricle of membranous labyrinth def: "The larger of the two otolith organs in the vestibule." [ISBN:0-8036-0655-9, MGI:smb, MP:0006090, PMID:15363417, Wikipedia:Utricle_(ear)] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth utricle" EXACT [] synonym: "utricle" EXACT [] synonym: "utriculus" EXACT [ZFA:0000700] synonym: "utriculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000625 xref: AAO:0011109 xref: BTO:0001807 xref: EHDAA2:0002153 xref: EHDAA:4726 xref: EMAPA:17293 xref: EV:0100368 xref: FMA:61113 xref: MA:0000247 xref: NCIT:C33844 xref: SCTID:279817006 xref: TAO:0000700 xref: UMLS:C0042158 {source="ncithesaurus:Utricle"} xref: VHOG:0000289 xref: Wikipedia:Utricle_(ear) xref: XAO:0000195 xref: ZFA:0000700 is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ property_value: external_definition "The portion of the membranous labyrinth of the ear into which the semicircular ducts find their outlet. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001854 name: saccule of membranous labyrinth def: "The smaller of the two otolith organs in the vestibule." [ISBN:0-8036-0655-9, MGI:smb, MP:0006089, PMID:15363417, Wikipedia:Saccule] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth saccule" EXACT [] synonym: "saccule" EXACT [] synonym: "sacculus" EXACT [ZFA:0000428] synonym: "sacculus" RELATED OMO:0003011 [Wikipedia:Saccule] synonym: "sacculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000550 xref: BTO:0001805 xref: EHDAA2:0001769 xref: EHDAA:4712 xref: EMAPA:17290 xref: EV:0100369 xref: FMA:61116 xref: MA:0000246 xref: NCIT:C33503 xref: SCTID:279827000 xref: TAO:0000428 xref: UMLS:C0036029 {source="ncithesaurus:Saccule"} xref: VHOG:0000374 xref: Wikipedia:Saccule xref: XAO:0000196 xref: ZFA:0000428 is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg" xsd:anyURI property_value: external_definition "The most ventral chamber of the membranous labyrinth. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) .[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001855 name: cochlear duct of membranous labyrinth def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct] subset: pheno_slim subset: uberon_slim synonym: "cochlea duct" EXACT [BIRNLEX:2562] synonym: "cochlear aqueduct" RELATED [] synonym: "cochlear duct" EXACT [] synonym: "ductus cochlearis" RELATED OMO:0003011 [BTO:0001692, Wikipedia:Cochlear_duct] synonym: "membranous cochlea" RELATED [BTO:0001692] synonym: "Reissner's canal" EXACT [FMA:61119] synonym: "Reissners canal" EXACT [BIRNLEX:2562] synonym: "scala media" RELATED [Wikipedia:Cochlear_duct] synonym: "scala medias" EXACT [BIRNLEX:2562] synonym: "scala of Loewenberg" RELATED [BTO:0001692] xref: BIRNLEX:2562 xref: BTO:0001692 xref: CALOHA:TS-0152 xref: EHDAA2:0000262 xref: EHDAA:4718 xref: EMAPA:17598 xref: FMA:61119 xref: GAID:874 xref: MA:0000243 xref: MESH:D003053 xref: NCIT:C32335 xref: SCTID:279849006 xref: UMLS:C1281166 {source="BIRNLEX:2562"} xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct", source="BIRNLEX:2562"} xref: VHOG:0000507 xref: Wikipedia:Cochlear_duct is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0002499 {source="FMA", source="MA"} ! cochlear labyrinth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png" xsd:anyURI property_value: editor_note "TODO - check cochlear duct vs cochlear aqueduct vs scala media" xsd:string property_value: external_definition "The coiled portion of the membranous labyrinth located inside the cochlea. It contains endolymph. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000507", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cochlear+duct"} property_value: homology_notes "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) In most groups of gnathostomes, the caudoventral evagination of the sacculus forms a small lagena, and in some diapsids and mammals the lagena develops into a longer duct. The lagena becomes greatly elongated in therians and coils to form the cochlear duct.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000507", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001856 name: semicircular duct def: "Any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium." [http://dictionary.reference.com/browse/semicircular+duct] synonym: "ductus semicirculares" RELATED OMO:0003004 [FMA:71880, FMA:TA] synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: EMAPA:32830 xref: FMA:61122 xref: MA:0000251 xref: MESH:D054776 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33528 xref: SCTID:279833009 xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"} xref: VHOG:0000238 is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth property_value: editor_note "TODO - check canal vs duct. see Wikipedia:File:Gray927.png" xsd:string property_value: homology_notes "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus (...); Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000238", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414 and p.58", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001857 name: anterior semicircular duct synonym: "superior semicircular duct" RELATED [VHOG:0000246] xref: EMAPA:37411 {source="MA:th"} xref: FMA:61123 xref: MA:0001211 xref: SCTID:279836001 xref: VHOG:0000246 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001841 ! anterior semicircular canal property_value: homology_notes "Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000246", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.53 and p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001858 name: posterior semicircular duct def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously." [Wikipedia:Semicircular_canal] subset: uberon_slim xref: EMAPA:37413 {source="MA:th"} xref: FMA:61126 xref: MA:0001214 xref: SCTID:279835002 xref: VHOG:0000248 xref: Wikipedia:Semicircular_canal is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001842 ! posterior semicircular canal property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png" xsd:anyURI property_value: function_notes "detect vertical head movements" xsd:string {source="WP"} property_value: homology_notes "Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000248", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.53 and p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001859 name: lateral semicircular duct subset: uberon_slim synonym: "external semicircular duct" RELATED [] xref: EMAPA:37412 {source="MA:th"} xref: FMA:61129 xref: MA:0001213 xref: SCTID:279834003 xref: VHOG:0000247 xref: Wikipedia:Lateral_semicircular_duct is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001843 ! lateral semicircular canal property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png" xsd:anyURI property_value: homology_notes "Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.58] ; In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000247", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001860 name: endolymphatic duct def: "The small membranous canal, connecting with both saccule and utricle of the membranous labyrinth, passing through the aqueduct of vestibule, and terminating in the endolymphatic sac." [MGI:anna, MGI:smb, MP:0006011] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ductus endolymphaticus" EXACT OMO:0003011 [AAO:0000135] synonym: "ductus endolymphaticus" RELATED OMO:0003011 [Wikipedia:Endolymphatic_duct] xref: AAO:0000135 xref: EMAPA:18580 xref: FMA:61246 xref: GAID:886 xref: MA:0001187 xref: MESH:D004711 xref: SCTID:362567008 xref: TAO:0002194 xref: Wikipedia:Endolymphatic_duct xref: ZFA:0001705 is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0001849 ! membranous labyrinth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png" xsd:anyURI property_value: external_definition "Duct that is part of the inner ear and connects to the semicircular canals ending in a pouch.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002194", ontology="TAO", source="Wikipedia:Endolymphatic_duct"} property_value: has_relational_adjective "endolymphatic" xsd:string [Term] id: UBERON:0001861 name: ductus reuniens def: "The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity." [Wikipedia:Canalis_reuniens_of_Hensen] synonym: "canal of Henson" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] synonym: "canalis reuniens" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] synonym: "canalis reuniens of Hensen" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] synonym: "Hensen duct" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] synonym: "Hensen's duct" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] xref: EMAPA:17287 xref: FMA:61252 xref: MA:0000244 xref: SCTID:279805009 xref: Wikipedia:Canalis_reuniens_of_Hensen is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0001862 {source="EMAPA"} ! vestibular labyrinth [Term] id: UBERON:0001862 name: vestibular labyrinth def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856] subset: pheno_slim synonym: "inner ear vestibular component" EXACT [EHDAA2:0000832] synonym: "labyrinthus vestibularis" RELATED [BTO:0001856] synonym: "vestibular apparatus" RELATED [] synonym: "vestibular component" BROAD [] xref: BTO:0001856 xref: CALOHA:TS-0479 xref: EHDAA2:0000832 xref: EHDAA:4706 xref: EMAPA:17286 xref: FMA:61255 xref: MA:0000245 xref: MESH:D014722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33871 xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"} xref: Wikipedia:Inner_ear xref: XAO:0004145 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001863 name: scala vestibuli def: "The division of the spiral canal of the cochlea lying on the apical side of the spiral lamina and vestibular membrane." [MGI:anna, MP:0003168] subset: pheno_slim subset: uberon_slim xref: EMAPA:35753 xref: FMA:61269 xref: MA:0001206 xref: MESH:D054738 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:362578000 xref: Wikipedia:Scala_vestibuli is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png" xsd:anyURI [Term] id: UBERON:0001864 name: scala tympani def: "The division of the spiral canal of the cochlea lying on the basal side of the spiral lamina." [MGI:anna, MP:0003167] subset: pheno_slim subset: uberon_slim xref: EMAPA:35752 xref: FMA:61272 xref: GAID:879 xref: MA:0001205 xref: MESH:D012533 xref: SCTID:362579008 xref: Wikipedia:Scala_tympani is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png" xsd:anyURI [Term] id: UBERON:0001865 name: cartilaginous external acoustic tube synonym: "cartilaginous external acoustic meatus" EXACT [] synonym: "cartilaginous part of external acoustic meatus" EXACT [] synonym: "external acoustic meatus cartilaginous part" EXACT [] synonym: "meatus acusticus externus cartilagineus" EXACT OMO:0003011 [FMA:61289, FMA:TA] xref: EMAPA:37525 {source="MA:th"} xref: FMA:61289 xref: MA:0001234 is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0001866 name: sebum def: "Fatty lubricant matter secreted by sebaceous glands, and made of made of triglyceride oils, wax, squalene, and metabolytes of fat-producing cells[BTO,WP]." [BTO:0001981, Wikipedia:Sebaceous_glands#Sebum] subset: uberon_slim xref: BTO:0001981 xref: ENVO:02000037 xref: FMA:61304 xref: GAID:1168 xref: MA:0002538 xref: MESH:D012629 xref: NCIT:C13276 xref: UMLS:C0036511 {source="ncithesaurus:Sebum"} xref: Wikipedia:Sebaceous_glands#Sebum is_a: UBERON:0000456 ! secretion of exocrine gland property_value: function_notes "waterproofs skin" xsd:string property_value: taxon_notes "The composition of sebum varies across species. In humans, the lipid content is as follows: 25% wax monoesters, 41% triglycerides, 16% free fatty acids, 12% squalene; Sapienic acid is a sebum fatty acid that is unique to humans." xsd:string [Term] id: UBERON:0001867 name: cartilage of external ear def: "A cartilage that is part of a external ear [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "external ear cartilage" EXACT [] xref: EMAPA:37706 {source="MA:th"} xref: FMA:61339 xref: GAID:103 xref: MA:0001886 xref: MESH:D004425 xref: NCIT:C49225 xref: UMLS:C0013445 {source="ncithesaurus:External_Ear_Cartilage"} is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001868 name: skin of chest def: "A zone of skin that is part of a chest [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "anterior thoracic region zone of skin" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax zone of skin" EXACT [OBOL:automatic] synonym: "chest skin" EXACT [] synonym: "chest zone of skin" EXACT [OBOL:automatic] synonym: "front of thorax zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of anterior chest" EXACT [FMA:61416] synonym: "zone of skin of anterior part of thorax" EXACT [FMA:61416] synonym: "zone of skin of anterior thoracic region" EXACT [OBOL:automatic] synonym: "zone of skin of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "zone of skin of chest" EXACT [OBOL:automatic] synonym: "zone of skin of front of thorax" EXACT [OBOL:automatic] synonym: "zone of skin of pectoral part of chest" RELATED [FMA:61417] xref: EMAPA:37279 {source="MA:th"} xref: FMA:61416 xref: MA:0000553 xref: SCTID:181496004 is_a: UBERON:0001418 ! skin of thorax relationship: part_of UBERON:0001443 ! chest property_value: editor_note "check FMA:61415" xsd:string [Term] id: UBERON:0001869 name: cerebral hemisphere def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]." [FMA:61817, Wikipedia:Cerebral_hemisphere] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "cerebrum" RELATED [https://github.com/obophenotype/uberon/issues/1208, MA:0000133, VHOG:0001639] synonym: "hemisphere" RELATED [VHOG:0001639] synonym: "hemispheric regions" RELATED [BAMS:HEM] synonym: "hemispherium cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_hemisphere] synonym: "medial amygdalar nucleus" RELATED [NeuroNames:241] synonym: "nucleus amygdaloideus medialis" RELATED OMO:0003011 [NeuroNames:241] synonym: "nucleus medialis amygdalae" RELATED OMO:0003011 [NeuroNames:241] xref: AAO:0010480 xref: BAMS:HEM xref: BIRNLEX:1042 xref: BTO:0000231 xref: CALOHA:TS-2007 xref: DMBA:15739 xref: EFO:0002521 xref: EMAPA:16653 xref: FMA:61817 xref: galen:CerebralHemisphere xref: MA:0000133 xref: MBA:403 xref: NCIT:C12351 xref: neuronames:241 {source="BIRNLEX:1042"} xref: SCTID:278251007 xref: UMLS:C0228174 {source="ncithesaurus:Cerebral_Hemisphere"} xref: UMLS:C0242202 {source="BIRNLEX:1042"} xref: VHOG:0001639 xref: Wikipedia:Cerebral_hemisphere is_a: UBERON:0000064 ! organ part is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001893 ! telencephalon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png" xsd:anyURI property_value: external_definition "Part of the telencephalon consisting of either of the two smooth, elongated halves of the cerebrum.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010480", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "The presence of paired evaginated hemispheres and olfactory bulbs in both agnathan and gnathostome radiations suggests that such hemispheres were also present in the common ancestor.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001639", ontology="VHOG", source="DOI:10.1146/annurev.ne.04.030181.001505 Northcutt RG, Evolution of the telencephalon in nonmammals. Ann. Rev. Neurosci. (1981)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001870 name: frontal cortex def: "Anterior portion of the neocortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally[NIFSTD,modified]." [NLXANAT:20090601] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cortex of frontal lobe" EXACT [FMA:242199] synonym: "frontal lobe cortex" EXACT [FMA:242199] synonym: "frontal neocortex" RELATED [DHBA:10161] synonym: "gray matter of frontal lobe" EXACT [FMA:242199] synonym: "grey matter of frontal lobe" EXACT [] xref: BTO:0000484 xref: DHBA:10161 xref: DMBA:16002 xref: EMAPA:35357 xref: FMA:242199 xref: GAID:674 xref: MA:0000905 xref: MESH:D005625 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLXANAT:20090601 xref: Wikipedia:Frontal_lobe is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0016525 ! frontal lobe relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray729.png" xsd:anyURI property_value: external_definition "Anterior portion of the frontal cortex, lying anterior to the central sulcus. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally." xsd:string {source="NLXANAT:20090601"} [Term] id: UBERON:0001871 name: temporal lobe def: "Lower lateral part of the cerebral hemisphere. (MSH)." [BIRNLEX:1160] comment: Boundary notes: It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [Wikipedia:Temporal_lobe] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "lobus temporalis" EXACT OMO:0003011 [Wikipedia:Temporal_lobe] synonym: "temporal cortex" NARROW [] xref: BAMS:Temporal_lobe xref: BAMS:TL xref: BIRNLEX:1160 xref: BTO:0001355 xref: CALOHA:TS-1020 xref: DHBA:12139 xref: EFO:0000917 xref: EMAPA:18797 xref: EV:0100169 xref: FMA:61825 xref: GAID:635 xref: HBA:4132 xref: MAT:0000508 xref: MESH:D013702 xref: NCIT:C12353 xref: neuronames:125 {source="BIRNLEX:1160"} xref: SCTID:180921000 xref: UMLS:C0039485 {source="BIRNLEX:1160", source="ncithesaurus:Temporal_Lobe"} xref: UMLS:C1268978 {source="BIRNLEX:1160"} xref: Wikipedia:Temporal_lobe is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png" xsd:anyURI [Term] id: UBERON:0001872 name: parietal lobe def: "Upper central part of the cerebral hemisphere. (MSH)." [BIRNLEX:1148] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "lobus parietalis" RELATED OMO:0003011 [Wikipedia:Parietal_lobe] synonym: "parietal region" BROAD [] synonym: "regio parietalis" EXACT OMO:0003011 [FMA:61826, FMA:TA] xref: BAMS:Parietal_lobe xref: BIRNLEX:1148 xref: BTO:0001001 xref: CALOHA:TS-0747 xref: DHBA:12131 xref: EFO:0000914 xref: EV:0100168 xref: FMA:61826 xref: GAID:680 xref: HBA:4084 xref: MAT:0000506 xref: MESH:D010296 xref: NCIT:C12354 xref: neuronames:95 {source="BIRNLEX:1148"} xref: SCTID:180922007 xref: UMLS:C0030560 {source="BIRNLEX:1148", source="ncithesaurus:Parietal_Lobe_of_the_Brain"} xref: Wikipedia:Parietal_lobe is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png" xsd:anyURI [Term] id: UBERON:0001873 name: caudate nucleus alt_id: UBERON:0010122 def: "Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species." [BIRNLEX:1373] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Ammon horn fields" RELATED [BAMS:CA] synonym: "caudatum" RELATED [BTO:0000211] synonym: "caudatus" EXACT [] synonym: "nucleus caudatus" RELATED OMO:0003011 [BTO:0000211, Wikipedia:Caudate_nucleus] xref: BAMS:CA xref: BAMS:Cd xref: BIRNLEX:1373 xref: BM:Tel-CA xref: BTO:0000211 xref: CALOHA:TS-0121 xref: DHBA:10334 xref: DMBA:15855 xref: EFO:0000907 xref: EHDAA2:0004461 xref: EMAPA:18207 xref: EV:0100185 xref: FMA:61833 xref: GAID:670 xref: HBA:4278 xref: MA:0000894 xref: MAT:0000513 xref: MESH:D002421 xref: NCIT:C12451 xref: neuronames:226 {source="BIRNLEX:1373"} xref: PBA:10082 xref: SCTID:279297002 xref: UMLS:C0007461 {source="ncithesaurus:Caudate_Nucleus", source="BIRNLEX:1373"} xref: Wikipedia:Caudate_nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0005383 {source="MA"} ! caudate-putamen relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg" xsd:anyURI property_value: external_definition "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent[FMA:61833]." xsd:string {source="FMA:61833"} [Term] id: UBERON:0001874 name: putamen def: "Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion." [BIRNLEX:809] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus putamen" EXACT [] xref: BAMS:PU xref: BAMS:Pu xref: BIRNLEX:809 xref: BM:Tel-Pu xref: CALOHA:TS-2041 xref: DHBA:10338 xref: DMBA:15857 xref: EMAPA:35719 xref: EV:0100187 xref: FMA:61834 xref: GAID:671 xref: HBA:4287 xref: MA:0000895 xref: MESH:D011699 xref: NCIT:C12452 xref: neuronames:230 {source="BIRNLEX:809"} xref: PBA:10086 xref: SCTID:281512002 xref: UMLS:C0034169 {source="ncithesaurus:Putamen"} xref: VHOG:0001456 xref: Wikipedia:Putamen is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere relationship: part_of UBERON:0005383 ! caudate-putamen relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg" xsd:anyURI property_value: editor_note "check - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)" xsd:string property_value: external_definition "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease[Wikipedia:Putamen]." xsd:string {source="Wikipedia:Putamen"} property_value: homology_notes "All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001456", ontology="VHOG", source="DOI:10.1016/j.cub.2011.05.001 Stephenson-Jones M, Samuelsson E, Ericsson J, Robertson B, Grillner S, Evolutionary conservation of the basal ganglia as a common vertebrate mechanism for action selection. Current Biology (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001875 name: globus pallidus def: "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle." [BIRNLEX:1234] comment: BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "globus pallidus (Burdach)" RELATED [NeuroNames:231] synonym: "nucleus pallidus" RELATED OMO:0003011 [NeuroNames:231] synonym: "pale body" EXACT [BIRNLEX:1234] synonym: "paleostriatum" EXACT [Wikipedia:Globus_pallidus] synonym: "pallidium" RELATED [Wikipedia:Globus_pallidus] synonym: "pallidum" RELATED [BIRNLEX:1234, GO:0021759, Wikipedia:Globus_pallidus] xref: BAMS:GP xref: BIRNLEX:1234 xref: BTO:0002246 xref: CALOHA:TS-2013 xref: DHBA:10342 xref: EFO:0000905 xref: EMAPA:35380 xref: EV:0100188 xref: FMA:61835 xref: GAID:668 xref: HBA:4293 xref: MA:0000890 xref: MAT:0000510 xref: MESH:D005917 xref: NCIT:C12449 xref: neuronames:231 {source="BIRNLEX:1234"} xref: PBA:10097 xref: SCTID:362361005 xref: UMLS:C0017651 {source="BIRNLEX:1234", source="ncithesaurus:Globus_Pallidus"} xref: Wikipedia:Globus_pallidus is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0006514 {source="MA"} ! pallidum property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif" xsd:anyURI property_value: external_definition "Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA][FMA:61835]." xsd:string {source="FMA:61835"} property_value: has_relational_adjective "pallidal" xsd:string [Term] id: UBERON:0001876 name: amygdala def: "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM)." [BIRNLEX:1241] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "amygdaloid area" RELATED [] synonym: "amygdaloid body" EXACT [] synonym: "amygdaloid complex" EXACT [BIRNLEX:1241] synonym: "amygdaloid nuclear complex" EXACT [] synonym: "amygdaloid nuclear group" RELATED [BTO:0001042] synonym: "amygdaloid nuclear groups" EXACT [] synonym: "amygdaloid nucleus" RELATED [FMA:61841] synonym: "archistriatum" EXACT [] synonym: "corpus amygdalae" RELATED OMO:0003011 [NeuroNames:237] synonym: "corpus amygdaloideum" RELATED OMO:0003011 [BTO:0001042, Wikipedia:Amygdala] synonym: "nucleus amygdalae" RELATED [BTO:0001042] xref: BAMS:Amg xref: BAMS:AMY xref: BAMS:Amy xref: BAMS:Amygdala xref: BAMS:Amygdaloid_complex xref: BIRNLEX:1241 xref: BM:Tel-Am xref: BTO:0001042 xref: CALOHA:TS-0037 xref: DHBA:10361 xref: EFO:0000252 xref: EMAPA:32672 xref: EMAPA:36051 xref: EV:0100189 xref: EV:0100190 xref: FMA:61841 xref: GAID:616 xref: HBA:4327 xref: MA:0000887 xref: MAT:0000289 xref: MESH:D000679 xref: MIAA:0000289 xref: NCIT:C12440 xref: neuronames:237 {source="BIRNLEX:1241"} xref: PBA:4002 xref: SCTID:279404004 xref: UMLS:C0002708 {source="BIRNLEX:1241", source="ncithesaurus:Amygdala"} xref: VHOG:0001277 xref: Wikipedia:Amygdala is_a: UBERON:0002420 {source="FMA"} ! basal ganglion is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system relationship: part_of UBERON:0001871 {source="BTO"} ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png" xsd:anyURI property_value: external_definition "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA:61841]" xsd:string {source="FMA:61841"} property_value: external_ontology_notes "MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype" xsd:string {external_ontology="MA"} property_value: has_relational_adjective "amygdalar" xsd:string property_value: homology_notes "One part of the striatum is called the archistriatum. (...) The archistriatum of fishes consists of several indistinctly segregated nuclei called the amygdaloid (...) complex. Tetrapods retain the structure, and in mammals the corresponding amygdala is a globular mass that tends to be ventral to the other basal nuclei.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001277", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.342", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001877 name: medial septal nucleus def: "Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981)." [BIRNLEX:1668, https://github.com/obophenotype/uberon/issues/1356] synonym: "medial parolfactory nucleus" EXACT [FMA:61879] synonym: "medial septal nucleus (Cajal)" RELATED [NeuroNames:262] synonym: "medial septum" NARROW [BIRNLEX:1668] synonym: "medial septum nucleus" RELATED [NeuroNames:262] synonym: "n. septi medialis" RELATED OMO:0003011 [NeuroNames:262] synonym: "nucleus medialis septi" RELATED OMO:0003011 [NeuroNames:262] synonym: "nucleus septalis medialis" RELATED [BTO:0002446] xref: BAMS:MS xref: BAMS:SMN xref: BIRNLEX:1668 xref: BM:Tel-Spt-SMN xref: BTO:0002446 xref: DHBA:10351 xref: DMBA:15764 xref: EMAPA:35553 xref: FMA:61879 xref: HBA:4302 xref: MA:0000935 xref: MBA:564 xref: neuronames:262 {source="BIRNLEX:1668"} xref: UMLS:C0175233 {source="BIRNLEX:1668"} xref: Wikipedia:Medial_septal_nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007629 ! medial septal complex property_value: external_definition "A nucleus in the septal area, coextensive with the diagonal band of Broca; it has afferent and cholinergic efferent connections with a variety of forebrain and brain stem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdaloid bodies." xsd:string {source="BTO:0002446"} property_value: external_definition "The medial septal nucleus is one of the septal nuclei. It plays a role in the generation of theta waves[Wikipedia:Medial_septal_nucleus]." xsd:string {source="Wikipedia:Medial_septal_nucleus"} [Term] id: UBERON:0001878 name: septofimbrial nucleus synonym: "nucleus septalis fimbrialis" RELATED OMO:0003011 [NeuroNames:264] synonym: "nucleus septofibrialis" EXACT [BIRNLEX:730] synonym: "nucleus septofimbrialis" RELATED [NeuroNames:264] synonym: "scattered nucleus of the septum" EXACT [] xref: BAMS:SF xref: BAMS:SFi xref: BAMS:SFN xref: BIRNLEX:730 xref: BM:SFN xref: DHBA:13032 xref: DMBA:15780 xref: EMAPA:35767 xref: FMA:61881 xref: MA:0000938 xref: MBA:310 xref: neuronames:264 {source="BIRNLEX:730"} xref: UMLS:C0694603 {source="BIRNLEX:730"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: mutually_spatially_disjoint_with UBERON:0002667 {source="ABA"} ! lateral septal nucleus relationship: mutually_spatially_disjoint_with UBERON:0007630 {source="ABA"} ! septohippocampal nucleus relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex [Term] id: UBERON:0001879 name: nucleus of diagonal band def: "A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala." [ncithesaurus:Nucleus_of_Diagonal_Band] synonym: "area olfactoria (Roberts)" RELATED OMO:0003011 [NeuroNames:265] synonym: "diagonal band nucleus" EXACT [] synonym: "diagonal nucleus" RELATED [NeuroNames:265] synonym: "nuclei of horizontal and vertical limbs of diagonal band" RELATED [NeuroNames:265] synonym: "nucleus fasciculi diagonalis Brocae" RELATED OMO:0003011 [NeuroNames:265] synonym: "nucleus of diagonal band (of Broca)" EXACT [] synonym: "nucleus of the diagonal band" RELATED [NeuroNames:265] synonym: "nucleus of the diagonal band of Broca" EXACT [] synonym: "olfactory area (roberts)" EXACT [] xref: BAMS:DB xref: BAMS:NDB xref: BIRNLEX:719 xref: DHBA:10354 xref: EHDAA2:0004708 xref: EMAPA:35598 xref: FMA:61882 xref: HBA:4309 xref: MA:0000936 xref: MBA:596 xref: NCIT:C97342 xref: neuronames:265 {source="BIRNLEX:719"} xref: UMLS:C0175227 {source="BIRNLEX:719", source="ncithesaurus:Nucleus_of_Diagonal_Band"} xref: Wikipedia:Nucleus_of_diagonal_band is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007629 {source="MA"} ! medial septal complex [Term] id: UBERON:0001880 name: bed nucleus of stria terminalis def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010, Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis] subset: efo_slim subset: human_reference_atlas synonym: "bed nuclei of the stria terminalis" EXACT OMO:0003004 [ABA:BST] synonym: "bed nuclei of the stria terminalis" RELATED [BAMS:BST] synonym: "bed nucleus of the stria terminalis" EXACT [BIRNLEX:724] synonym: "bed nucleus stria terminalis (Johnson)" EXACT [BIRNLEX:724] synonym: "bed nucleus striae terminalis" EXACT [XAO:0004541] synonym: "BST" BROAD OMO:0003000 [INCF:Seattle_mtg_2010] synonym: "intercalate nucleus of stria terminalis" EXACT [] synonym: "interstitial nucleus of stria terminalis" EXACT [BIRNLEX:724] synonym: "nuclei of stria terminalis" EXACT [] synonym: "nucleus interstitialis striae terminalis" RELATED OMO:0003011 [NeuroNames:267] synonym: "nucleus of stria terminalis" EXACT [FMA:61884] synonym: "nucleus of the stria terminalis" RELATED [NeuroNames:267] synonym: "nucleus proprius stria terminalis (bed nucleus)" RELATED [BAMS:BST] synonym: "nucleus striae terminalis" EXACT OMO:0003011 [FMA:61884, FMA:TA] synonym: "stria terminalis nucleus" EXACT [] xref: BAMS:Bed.n.term. xref: BAMS:BST xref: BAMS:bst xref: BAMS:ST xref: BAMS:stb xref: BAMS:StT xref: BIRNLEX:724 xref: BM:BNST xref: BTO:0002698 xref: DHBA:10384 xref: EFO:0001971 xref: EMAPA:35169 xref: FMA:61884 xref: HBA:4313 xref: MA:0000925 xref: MBA:351 xref: neuronames:267 {source="BIRNLEX:724"} xref: UMLS:C0228365 {source="BIRNLEX:724"} xref: Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis xref: XAO:0004541 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="EMAPA", source="FMA"} ! septal nuclear complex relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001881 name: island of Calleja def: "One of the seven small groups of granule cells in the polymorph layer of the olfactory tubercle and one large group, the insula magna, which lies along the border between septum, nucleus accumbens and nucleus of the diagonal band." [MP:0010010, PMID:80412] subset: pheno_slim subset: uberon_slim synonym: "Calleja island" EXACT [] synonym: "insula callejae" RELATED OMO:0003011 [Wikipedia:Islands_of_Calleja] synonym: "insulae olfactoriae" RELATED OMO:0003011 [Wikipedia:Islands_of_Calleja] synonym: "islands of Calleja" EXACT [] synonym: "islands of Calleja (olfactory tubercle)" RELATED [NeuroNames:276] xref: BAMS:ICj xref: BAMS:IClj xref: BAMS:ISC xref: BAMS:isl xref: BIRNLEX:1113 xref: BM:Tel-ISC xref: DHBA:10358 xref: EMAPA:35452 xref: FMA:61888 xref: GAID:632 xref: HBA:265504792 xref: MA:0000977 xref: MBA:481 xref: MESH:D020670 xref: neuronames:276 {source="BIRNLEX:1113"} xref: PBA:10095 xref: UMLS:C0262264 {source="BIRNLEX:1113"} xref: Wikipedia:Islands_of_Calleja is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Islands_of_Calleja_Rat.jpg" xsd:anyURI property_value: taxon_notes "The islands of Calleja are located within the olfactory tubercle in most species; however, in primates these islands are located within the nucleus accumbens, since the olfactory tubercle is absent or extremely rudimentary in the brains of primates" xsd:string {source="MP:0010010"} [Term] id: UBERON:0001882 name: nucleus accumbens def: "A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the neostriatum (caudate nucleus and putamen), the nucleus accumbens forms the striatum." [BIRNLEX:727] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "accumbens nucleus" EXACT [FMA:61889] synonym: "colliculus nuclei caudati" RELATED OMO:0003011 [NeuroNames:277] synonym: "colliculus of caudate nucleus" EXACT [FMA:61889] synonym: "nucleus accumbens septi" EXACT [FMA:61889, Wikipedia:Nucleus_accumbens] xref: BAMS:ACB xref: BAMS:Acb xref: BAMS:ACC xref: BIRNLEX:727 xref: BM:Ac xref: BTO:0001862 xref: DHBA:10339 xref: EFO:0000906 xref: EHDAA2:0004707 xref: EMAPA:32789 xref: FMA:61889 xref: GAID:672 xref: HBA:4290 xref: MA:0000892 xref: MAT:0000512 xref: MBA:56 xref: MESH:D009714 xref: NCIT:C52733 xref: neuronames:277 {source="BIRNLEX:727"} xref: PBA:10092 xref: SCTID:427667007 xref: UMLS:C0028633 {source="ncithesaurus:Accumbens_Nucleus"} xref: Wikipedia:Nucleus_accumbens is_a: UBERON:0009663 ! telencephalic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001883 {source="ABA"} ! olfactory tubercle relationship: part_of UBERON:0000349 {source="FMA", source="GO"} ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0005403 {source="MA"} ! ventral striatum relationship: present_in_taxon NCBITaxon:8782 {source="ISBN:0471888893"} relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg" xsd:anyURI property_value: external_definition "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO][GO:0021768]." xsd:string {source="GO:0021768"} property_value: taxon_notes "The ventral striatopallidal complex in birds corresponds closely to its counterpart in mammals, with a nucleus accumbes present in the rostral telenceaphalon. Note that in birds, a region previously called the nucleus accumbens is now recognized as the lateral part of the bed nucleus of stria terminalis.[ISBN:0471888893]" xsd:string [Term] id: UBERON:0001883 name: olfactory tubercle def: "Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone)." [NLXANAT:1005037] subset: pheno_slim subset: uberon_slim synonym: "tuberculum olfactorium" EXACT OMO:0003011 [] xref: BAMS:DLT xref: BAMS:OLT xref: BAMS:OT xref: BAMS:Tu xref: BM:Tel-OLT xref: BTO:0001869 xref: DHBA:10310 xref: EHDAA2:0004701 xref: EMAPA:35616 xref: EV:0100177 xref: HBA:10145 xref: MA:0000976 xref: MBA:754 xref: MESH:D066208 xref: NLXANAT:1005037 xref: PBA:10096 xref: VHOG:0001625 xref: Wikipedia:Olfactory_tubercle is_a: UBERON:0009663 ! telencephalic nucleus relationship: dubious_for_taxon NCBITaxon:9443 {source="MP", comment="EDITOR_NOTE check EHDAA2"} relationship: mutually_spatially_disjoint_with UBERON:0001882 {source="ABA"} ! nucleus accumbens relationship: part_of UBERON:0002894 {source="EHDAA2-inferred", source="MA", source="VHOG", source="Wikipedia"} ! olfactory cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI property_value: external_definition "The olfactory tubercle is a structure involved in Olfaction. It is present in humans, but much smaller than it is in some other animals. It is a frequent subject of research." xsd:string {source="Wikipedia:Olfactory_tubercle"} property_value: taxon_notes "Absent in primates" xsd:string {source="MP"} [Term] id: UBERON:0001884 name: phrenic nerve def: "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium." [VHOG:0000728] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "diaphragmatic nerve" RELATED [BTO:0001063] synonym: "nervus phrenicus" RELATED OMO:0003011 [BTO:0001063, Wikipedia:Phrenic_nerve] synonym: "phrenic" RELATED [BTO:0001063] xref: BAMS:phn xref: BTO:0001063 xref: EHDAA:4677 xref: EMAPA:17813 xref: FMA:6191 xref: GAID:848 xref: MA:0001170 xref: MESH:D010791 xref: NCIT:C52813 xref: SCTID:280344009 xref: UMLS:C0031774 {source="ncithesaurus:Phrenic_Nerve"} xref: VHOG:0000728 xref: Wikipedia:Phrenic_nerve is_a: UBERON:0003443 ! thoracic cavity nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray806.png" xsd:anyURI property_value: external_definition "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000728", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/phrenic+nerve"} [Term] id: UBERON:0001885 name: dentate gyrus of hippocampal formation def: "Part of the hippocampal formation forming a 'V' or 'U' shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer." [BIRNLEX:1178] comment: BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "area dentata" EXACT [] synonym: "dentate area" RELATED [DHBA:10295] synonym: "dentate area (dentate gyrus)" EXACT [DHBA:10295] synonym: "dentate gyrus" EXACT [] synonym: "fascia dentata" NARROW [] synonym: "gyrus dentatus" RELATED OMO:0003011 [BTO:0002496, Wikipedia:Dentate_gyrus] synonym: "hippocampal dentate gyrus" RELATED [BTO:0002496] xref: BAMS:DG xref: BIRNLEX:1178 xref: BM:Tel-DG xref: BTO:0002496 xref: BTO:0002615 xref: CALOHA:TS-2388 xref: DHBA:10295 xref: DMBA:16115 xref: EFO:0001366 xref: EMAPA:19037 xref: FMA:61922 xref: GAID:624 xref: HBA:12891 xref: MA:0000190 xref: MBA:726 xref: MESH:D018891 xref: NCIT:C32452 xref: neuronames:179 xref: SCTID:279211002 xref: UMLS:C0152314 {source="ncithesaurus:Dentate_Gyrus"} xref: Wikipedia:Dentate_gyrus is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0001954 {source="ABA"} ! Ammon's horn relationship: mutually_spatially_disjoint_with UBERON:0002601 {source="ABA"} ! fasciolar gyrus relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg" xsd:anyURI property_value: external_definition "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO][GO:0021542]." xsd:string {source="GO:0021542"} [Term] id: UBERON:0001886 name: choroid plexus def: "A network formed by blood vessels and the tela choroidea which secretes CSF into the ventricular spaces." [ISBN:0471888893, Wikipedia:Choroid_plexus] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chorioid plexus" EXACT [FMA:61934] synonym: "choroid plexus of cerebral hemisphere" RELATED [FMA:61934] synonym: "CP" BROAD OMO:0003000 [PMID:23375746] synonym: "plexus choroideus" EXACT OMO:0003011 [FMA:61934, FMA:TA] synonym: "plexus choroideus" RELATED OMO:0003011 [Wikipedia:Choroid_plexus] synonym: "ventricular choroid plexus" RELATED [] xref: BAMS:CHP xref: BAMS:chp xref: BAMS:chpl xref: BAMS:GHP xref: BTO:0000258 xref: CALOHA:TS-0145 xref: EFO:0001915 xref: EMAPA:32741 xref: FMA:61934 xref: GAID:607 xref: MA:0000823 xref: MBA:108 xref: MESH:D002831 xref: NCIT:C12694 xref: neuronames:1377 xref: SCTID:264450003 xref: TAO:0001443 xref: UMLS:C0008524 {source="ncithesaurus:Choroid_Plexus"} xref: VHOG:0001377 xref: Wikipedia:Choroid_plexus xref: ZFA:0001443 is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0005629 ! vascular plexus is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system relationship: part_of UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0005283 ! tela choroidea property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg" xsd:anyURI property_value: editor_note "TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerebral hemisphere" xsd:string property_value: external_definition "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001443", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Fringe of the tela choroidea of the brain ventricles[MP]" xsd:string {source="MP:0000820"} property_value: has_relational_adjective "choroidal" xsd:string [Term] id: UBERON:0001887 name: internal capsule of telencephalon def: "White matter regional part of brain which is flanked by nuclear masses, consisting of both afferent and efferent fibers projecting between the cerebral cortex and the brainstem and spinal cord. It consists of three distinct parts: an anterior limb, posterior limb, and genu. (Adapted from MSH by Maryann Martone)." [BIRNLEX:1659] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brain internal capsule" EXACT [MP:0008128] synonym: "capsula interna" RELATED OMO:0003011 [Wikipedia:Internal_capsule] synonym: "internal capsule" BROAD [MA:0002748] synonym: "internal capsule radiations" EXACT [] xref: BAMS:ic xref: BAMS:int xref: BIRNLEX:1659 xref: BM:IC xref: DHBA:10581 xref: DMBA:17770 xref: EMAPA:18206 xref: EMAPA:35437 xref: FMA:61950 xref: GAID:685 xref: HBA:9263 xref: MA:0002748 xref: MBA:6 xref: MESH:D020772 xref: NCIT:C13082 xref: PBA:10102 xref: SCTID:85637007 xref: UMLS:C0152341 {source="BIRNLEX:1659", source="ncithesaurus:Internal_Capsule"} xref: Wikipedia:Internal_capsule is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg" xsd:anyURI [Term] id: UBERON:0001888 name: lateral olfactory stria def: "White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone)." [BIRNLEX:1559] subset: uberon_slim subset: vertebrate_core synonym: "lateral olfactory stria" RELATED [FMA:61971, NeuroNames:284] synonym: "lateral olfactory tract" RELATED [NeuroNames:284] synonym: "lateral olfactory tract, body" RELATED [NeuroNames:284] synonym: "lateral olfactory tract. body" RELATED [BAMS:lot] synonym: "LOT" RELATED OMO:0003000 [] synonym: "olfactory tract" RELATED [NeuroNames:284] synonym: "stria olfactoria lateralis" RELATED OMO:0003011 [NeuroNames:284, Wikipedia:Lateral_olfactory_stria] synonym: "tractus olfactorius lateralis" EXACT OMO:0003011 [ZFA:0000229] synonym: "tractus olfactorius lateralis" RELATED OMO:0003011 [NeuroNames:284] xref: BAMS:LDTR xref: BAMS:lo xref: BAMS:lot xref: BAMS:LOTR xref: BIRNLEX:1559 xref: BM:Tel-LOT xref: DHBA:12075 xref: DMBA:17773 xref: EV:0100175 xref: FMA:61971 xref: HBA:265505514 xref: MBA:665 xref: neuronames:284 {source="BIRNLEX:1559"} xref: SCTID:369107001 xref: UMLS:C0152330 {source="BIRNLEX:1559"} xref: Wikipedia:Lateral_olfactory_stria is_a: UBERON:0034730 ! olfactory tract linking bulb to ipsilateral dorsal telencephalon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI property_value: taxon_notes "In mammals the fibers of the dorsal lateral olfactory tract either pass under the accessory olfactory formation, or they penetrate through it separating the internal granule cells from the output cells." xsd:string {source="PMID:7437895"} [Term] id: UBERON:0001889 name: trunk of phrenic nerve synonym: "phrenic nerve trunk" EXACT [] synonym: "phrenic neural trunk" EXACT [] xref: EHDAA2:0001463 xref: EMAPA:37718 {source="MA:th"} xref: FMA:6198 xref: MA:0001177 is_a: UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0001884 ! phrenic nerve [Term] id: UBERON:0001890 name: forebrain def: "The most anterior region of the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "FB" BROAD OMO:0003000 [BIRNLEX:1509, NIFSTD:NeuroNames_abbrevSource] synonym: "prosencephalon" RELATED [] xref: AAO:0010147 xref: BAMS:FB xref: BAMS:Forebrain xref: BIRNLEX:1509 xref: BTO:0000478 xref: CALOHA:TS-0380 xref: DHBA:10156 xref: DMBA:15566 xref: EFO:0000909 xref: EHDAA2:0000556 xref: EHDAA:3470 xref: EMAPA:16895 xref: FMA:61992 xref: MA:0000170 xref: MAT:0000105 xref: MESH:D016548 xref: MIAA:0000105 xref: NCIT:C40185 xref: neuronames:27 {source="BIRNLEX:1509"} xref: SCTID:362291003 xref: TAO:0000109 xref: UMLS:C0085140 {source="ncithesaurus:Fore-Brain", source="BIRNLEX:1509"} xref: VHOG:0000383 xref: Wikipedia:Forebrain xref: XAO:0000011 xref: ZFA:0000109 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003080 ! anterior neural tube relationship: immediate_transformation_of UBERON:0006240 {evidence="definitional"} ! future forebrain relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000109", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: external_definition "Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010147", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000109", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "prosencephalic" xsd:string property_value: homology_notes "In craniate embryos, neural expression of Distal-less-related genes is exclusively in the forebrain (...). Because the major neural expression domain of amphioxus AmphiDll is in the anterior three-fourths of the cerebral vesicle, we suggest that this region of the neural tube is homologous to parts of the craniate forebrain. This conclusion is strongly supported by three-dimensional, computer-assisted reconstruction of the neural tube of amphioxus based on serial transmission electron microscopy. At the neuroanatomical level, a number of detailed homologies are indicated between the anterior three-fourths of the amphioxus cerebral vesicle and the diencephalic region of the craniate forebrain. If one assumes that the amphioxus condition fairly represents the nervous system of the proximate ancestor of the craniates, one can suggest that they evolved from a creature that had the beginnings of a forebrain.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000383", ontology="VHOG", source="PMID:8787764 Holland ND, Panganiban G, Henyey EL, Holland LZ, Sequence and developmental expression of AmphiDll, an amphioxus Distal-less gene transcribed in the ectoderm, epidermis and nervous system: insights into evolution of craniate forebrain and neural crest. Development (1996)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001891 name: midbrain def: "The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [GO:0030901] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "MB" BROAD OMO:0003000 [BIRNLEX:1667, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalon" RELATED OMO:0003011 [Wikipedia:Midbrain] xref: AAO:0010149 xref: BAMS:MES xref: BIRNLEX:1667 xref: BM:MB xref: BTO:0000138 xref: CALOHA:TS-0630 xref: DHBA:10648 xref: DMBA:16649 xref: EFO:0000919 xref: EHDAA2:0001162 xref: EHDAA:3694 xref: EMAPA:16974 xref: EV:0100242 xref: FMA:61993 xref: HBA:9001 xref: MA:0000207 xref: MAT:0000106 xref: MBA:313 xref: MESH:D008636 xref: MIAA:0000106 xref: NCIT:C12510 xref: neuronames:462 {source="BIRNLEX:1667"} xref: RETIRED_EHDAA2:0001104 xref: SCTID:279099009 xref: TAO:0000128 xref: UMLS:C0025462 {source="BIRNLEX:1667", source="ncithesaurus:Mesencephalon"} xref: VHOG:0000069 xref: Wikipedia:Midbrain xref: XAO:0000014 xref: ZFA:0000128 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediate_transformation_of UBERON:0009616 {source="Bgee:AN"} ! presumptive midbrain relationship: mutually_spatially_disjoint_with UBERON:0001894 {exceptions="ZFA", exceptions_url="https://github.com/obophenotype/uberon/issues/378", source="ABA", status="pending"} ! diencephalon relationship: mutually_spatially_disjoint_with UBERON:0002028 {exceptions="ZFA", source="ABA", status="pending"} ! hindbrain relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG" xsd:anyURI property_value: editor_note "developmental relationships need revised" xsd:string property_value: external_definition "Middle part of the brain composed of the optic tectum and penducular region.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010149", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000128", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "part of brainstem in ABA - we reject this in favor of ISBN:0471888893 which has an implicit overlaps relationships" xsd:string {external_ontology="ABA"} property_value: has_relational_adjective "mesencephalic" xsd:string property_value: homology_notes "Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000069", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001892 name: rhombomere def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure.[WP]." [Wikipedia:Rhombomere, ZFIN:curator] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "future rhombencephalon" RELATED [MIAA:0000272] synonym: "hindbrain neuromere" EXACT [] synonym: "hindbrain neuromeres" EXACT OMO:0003004 [DHBA:HNM] synonym: "hindbrain segment" BROAD [ZFA:0001064] synonym: "rhombomere" EXACT [] synonym: "rhombomeres" RELATED OMO:0003004 [VHOG:0000672] synonym: "segment of hindbrain" BROAD [ZFA:0001064] xref: DHBA:12664 xref: EFO:0003617 xref: EMAPA:16148 xref: FMA:295666 xref: MAT:0000272 xref: MIAA:0000272 xref: RETIRED_EHDAA2:0000669 xref: TAO:0001064 xref: VHOG:0000672 xref: Wikipedia:Rhombomere xref: XAO:0004079 xref: ZFA:0001064 is_a: UBERON:0004731 ! neuromere relationship: part_of UBERON:0007277 ! presumptive hindbrain property_value: external_definition "A segment of the developing hindbrain. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001064", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "DHBA divides this into A(1-3),B(4),C(5-7) and D(8)" xsd:string property_value: homology_notes "Rhombomeric segmentation is found in all living vertebrates and is of fundamental importance to the development of the vertebrate head.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000672", ontology="VHOG", source="DOI:10.1006/dbio.2002.0831 Mazet F, Shimeld SM, The Evolution of Chordate Neural Segmentation. Developmental Biology (2002)", source="http://bgee.unil.ch/"} property_value: taxon_notes "In human embryonic development, the rhombomeres are present by day 29" xsd:string [Term] id: UBERON:0001893 name: telencephalon def: "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres." [AAO:0010479, XAO:0000012] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebrum" EXACT [BTO:0000239, EMAPA:16910, FMA:62000, https://github.com/obophenotype/uberon/issues/1208, Wikipedia:Talk\:Cerebrum/Archive_1] synonym: "endbrain" EXACT [neuronames:31, Swanson:2004] synonym: "supratentorial region" BROAD [Wikipedia:Tentorium_cerebelli] xref: AAO:0010479 xref: BAMS:CB xref: BAMS:CH xref: BAMS:IV xref: BAMS:Tel xref: BIRNLEX:1115 xref: BM:Tel xref: BTO:0000239 xref: CALOHA:TS-1018 xref: DHBA:10158 xref: EFO:0000912 xref: EHDAA2:0001982 xref: EMAPA:16910 xref: EV:0100165 xref: FMA:62000 xref: GAID:621 xref: HBA:4007 xref: MA:0000183 xref: MAT:0000421 xref: MBA:567 xref: MESH:D013687 xref: MIAA:0000421 xref: neuronames:31 {source="BIRNLEX:1115"} xref: PBA:128011350 xref: SCTID:263353005 xref: TAO:0000079 xref: UMLS:C0039452 {source="BIRNLEX:1115"} xref: VHOG:0000283 xref: Wikipedia:Telencephalon xref: XAO:0000012 xref: ZFA:0000079 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0004121 ! ectoderm-derived structure relationship: immediate_transformation_of UBERON:0014371 {source="Bgee:AN"} ! future telencephalon relationship: mutually_spatially_disjoint_with UBERON:0002037 {source="ABA"} ! cerebellum relationship: part_of UBERON:0001890 ! forebrain property_value: axiom_lost_from_external_ontology "relationship loss: develops_from presumptive telencephalon (TAO:0000571)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000079", ontology="TAO"} property_value: external_definition "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA:62000]." xsd:string {source="FMA:62000"} property_value: external_definition "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010479", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000079", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "cerebral" xsd:string property_value: has_relational_adjective "telencephalic" xsd:string property_value: has_relational_adjective "telenencephalic" xsd:string property_value: homology_notes "From an evolutionary standpoint, the telencephalon is the most recent brain structure: the amphioxus does not have this structure as a morphological entity. Overt telencephalon is present in the hagfish and lamprey to receive numerous input fibers from various parts of the CNS, similar to gnathostomes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000283", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.008 Murakami Y, Uchida K, Rijli FM and Kuratani S, Evolution of the brain developmental plan: Insights from agnathans. Developmental Biology (2005)", source="http://bgee.unil.ch/"} property_value: taxon_notes "dolphins are the only species (other than humans) to have cerebra accounting for as much as 2 percent of their body weight." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: taxon_notes "In mammals the cortex covers almost the whole of the cerebral hemispheres." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: taxon_notes "In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. [ZFA:0000079, ISBN:3764351209]" xsd:string property_value: taxon_notes "In ray-finned fishes the inner surfaces of the lateral and ventral regions of the cerebrum bulge up into the ventricles." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: taxon_notes "In the amniotes, the cerebrum becomes increasingly large and complex. In reptiles, the paleopallium is much larger than in amphibians, and its growth has pushed the basal nuclei into the central regions of the cerebrum." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: taxon_notes "In the most primitive living vertebrates, the hagfishes and lampreys, the cerebrum is a relatively simple structure receiving nerve impulses from the olfactory bulb." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: taxon_notes "The cerebrum of birds has evolved along different lines to that of mammals, although they are similarly enlarged, by comparison with reptiles. However, this enlargement is largely due to the basal ganglia, with the other areas remaining relatively primitive in structure." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} [Term] id: UBERON:0001894 name: diencephalon def: "The division of the forebrain that develops from the foremost primary cerebral vesicle." [Wikipedia:Diencephalon] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "between brain" EXACT [] synonym: "betweenbrain" RELATED [BTO:0000342] synonym: "DiE" BROAD OMO:0003000 [BIRNLEX:1503, NIFSTD:NeuroNames_abbrevSource] synonym: "diencephalon" RELATED OMO:0003011 [Wikipedia:Diencephalon] synonym: "interbrain" EXACT [Swanson:2004] synonym: "mature diencephalon" EXACT [FMA:62001] synonym: "thalamencephalon" EXACT [MGI:anna] xref: AAO:0010481 xref: BAMS:DI xref: BAMS:Di xref: BAMS:DiE xref: BAMS:IB xref: BAMS:Zh. xref: BIRNLEX:1503 xref: BM:Die xref: BTO:0000342 xref: CALOHA:TS-0199 xref: DHBA:10389 xref: DMBA:16308 xref: EFO:0000911 xref: EHDAA2:0000385 xref: EHDAA:1969 xref: EHDAA:2645 xref: EHDAA:3472 xref: EMAPA:16896 xref: EV:0100194 xref: FMA:62001 xref: GAID:618 xref: HBA:4391 xref: MA:0000171 xref: MAT:0000420 xref: MBA:1129 xref: MESH:D004027 xref: MIAA:0000420 xref: NCIT:C12456 xref: neuronames:288 {source="BIRNLEX:1503"} xref: PBA:128013010 xref: SCTID:279328001 xref: TAO:0000101 xref: UMLS:C0012144 {source="ncithesaurus:Diencephalon", source="BIRNLEX:1503"} xref: VHOG:0000318 xref: Wikipedia:Diencephalon xref: XAO:0000013 xref: ZFA:0000101 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediate_transformation_of UBERON:0006222 {evidence="definitional"} ! future diencephalon relationship: mutually_spatially_disjoint_with UBERON:0001891 {exceptions="ZFA", source="ABA", source="https://github.com/obophenotype/uberon/issues/378", status="pending"} ! midbrain relationship: mutually_spatially_disjoint_with UBERON:0002028 {source="ABA"} ! hindbrain relationship: part_of UBERON:0001890 ! forebrain relationship: present_in_taxon NCBITaxon:7762 {notes="not well differentiated from the cerebrum. (Ariens, p. 868)", source="PMID:8932866"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: external_definition "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000101", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010481", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "in ABA, this is part of the brain stem" xsd:string {external_ontology="ABA"} property_value: has_relational_adjective "diencephalic" xsd:string property_value: homology_notes "Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000318", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001895 name: metencephalon def: "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum[WP,modified]." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Metencephalon] comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. subset: pheno_slim subset: uberon_slim synonym: "epencephalon" BROAD INCONSISTENT [ncithesaurus:Epencephalon] synonym: "epencephalon-2" EXACT [FMA:62003] xref: BAMS:Met xref: BIRNLEX:965 xref: BTO:0000673 xref: CALOHA:TS-2029 xref: DHBA:10655 xref: EHDAA2:0001149 xref: EHDAA:5498 xref: EMAPA:17071 xref: FMA:62003 xref: GAID:594 xref: HBA:4833 xref: MA:0000197 xref: MESH:D020540 xref: NCIT:C32741 xref: neuronames:543 {source="BIRNLEX:965"} xref: UMLS:C0376353 {source="BIRNLEX:965"} xref: UMLS:C1516904 {source="ncithesaurus:Epencephalon"} xref: VHOG:0000741 xref: Wikipedia:Metencephalon is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: dubious_for_taxon NCBITaxon:7955 relationship: immediate_transformation_of UBERON:0010092 {evidence="definitional"} ! future metencephalon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: external_definition "Anterior part of the hindbrain ventral to the cerebellum[BIRNLEX:965]." xsd:string {source="BIRNLEX:965"} property_value: external_definition "The anterior of two brain vesicles formed by specialization of the rhombencephalon in the developing embryo. It gives rise to cerebellum and pons. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/metencephalon"} property_value: homology_notes "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001896 name: medulla oblongata def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bulb" BROAD [] synonym: "bulbus" EXACT OMO:0003011 [FMA:62004, FMA:TA] synonym: "medulla" BROAD [ABA:MY] synonym: "medulla oblonzata" RELATED OMO:0003011 [Wikipedia:Medulla_oblongata] synonym: "metepencephalon" RELATED [FMA:62004] xref: AAO:0010486 xref: BAMS:Md xref: BAMS:MY xref: BIRNLEX:957 xref: BM:Me xref: BTO:0000041 xref: CALOHA:TS-0607 xref: DMBA:17352 xref: EFO:0000924 xref: EHDAA2:0001088 xref: EHDAA:7588 xref: EMAPA:17550 xref: EV:0100275 xref: FMA:62004 xref: GAID:590 xref: MA:0000206 xref: MAT:0000111 xref: MAT:0000367 xref: MBA:354 xref: MESH:D008526 xref: MIAA:0000111 xref: NCIT:C12442 xref: neuronames:698 {source="BIRNLEX:957"} xref: SCTID:279104005 xref: TAO:0000545 xref: UMLS:C0025148 {source="ncithesaurus:Medulla_Oblongata", source="BIRNLEX:957"} xref: UMLS:C1269575 {source="BIRNLEX:957"} xref: VHOG:0000181 xref: Wikipedia:Bone_marrow_of_ovary_oblongata xref: XAO:0003100 xref: ZFA:0000545 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0005290 ! myelencephalon relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg" xsd:anyURI property_value: external_definition "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010486", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The posterior region of the brain that is continuous with the spinal cord. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-17, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000181", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "Classical anatomical studies subdivided the vertebrate rhombencephalon into pons and medulla oblongata. (...) The medulla oblongata appears therefore as a tagma, that is, a group of segmental units (pseudorhombomeres, in this case) sharing some morphological and molecular characteristics, and in some aspects different from the segmental units present in adjoining brain regions, pons and spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000181", ontology="VHOG", source="DOI:10.1016/j.ydbio.2008.08.017 Marin F, Aroca P, Puelles L, Hox gene colinear expression in the avian medulla oblongata is correlated with pseudorhombomeric domains. Developmental Biology (2008)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001897 name: dorsal plus ventral thalamus def: "Subcortical brain region consisting of paired gray matter bodies in the dorsal diencephalon and forming part of the lateral wall of the third ventricle of the brain. The thalamus represents the major portion of the diencephalon and is commonly divided into cellular aggregates known as nuclear groups.(MeSH). The dorsal topographic division of the interbrain. The macrodissected adult human thalamus was clearly illustrated by Vesalius in 1543 and the term as defined here was introduced by His in 1893. It includes the traditional epithalamus, dorsal thalamus, and ventral thalamus of Herrick (1910, pp. 494, 498). Also see Kuhlenbeck (1927, Ch. 9) and Jones (1985, p. 87)." [BIRNLEX:954] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Th" BROAD OMO:0003000 [BIRNLEX:954, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] synonym: "thalamencephalon" RELATED OMO:0003011 [NeuroNames:300] synonym: "thalami" RELATED OMO:0003004 [VHOG:0000657] synonym: "thalamus" BROAD [FMA:62007, MA:0000179] synonym: "thalamus opticus" RELATED OMO:0003011 [NeuroNames:300] synonym: "wider thalamus" EXACT [PMCID:PMC3345571] xref: AAO:0010483 xref: BAMS:TH xref: BAMS:Th xref: BIRNLEX:954 xref: BTO:0001365 xref: CALOHA:TS-1031 xref: DHBA:10390 xref: DMBA:16376 xref: EFO:0000910 xref: EMAPA:17540 xref: EV:0100195 xref: GAID:656 xref: galen:Thalamus xref: HBA:4392 xref: MA:0000179 xref: MAT:0000109 xref: MBA:549 xref: MIAA:0000109 xref: NCIT:C12459 xref: neuronames:300 {source="BIRNLEX:954"} xref: PBA:128013014 xref: SCTID:244433007 xref: TAO:0001215 xref: UMLS:C0039729 {source="BIRNLEX:954", source="ncithesaurus:Thalamus"} xref: VHOG:0000657 xref: Wikipedia:Thalamus xref: ZFA:0001215 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0015212 ! lateral structure relationship: mutually_spatially_disjoint_with UBERON:0001898 {source="ABA"} ! hypothalamus relationship: part_of UBERON:0010225 ! thalamic complex relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Brain_chrischan_thalamus.jpg" xsd:anyURI property_value: external_definition "One of a pair of large oval nervous structures made of gray matter and forming most of the lateral walls of the third ventricle of the brain and part of the diencephalon. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000657", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/thalamus"} property_value: external_definition "Part of the diencephalon consisting of a mass of connecting fibers which relay sensory information to the cerebral cortex.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010483", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "thalamic" xsd:string property_value: homology_notes "(...) the brain regions of tetrapods, the structures they contain, and their basic organizational features are the same as in fishes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000657", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.484", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001898 name: hypothalamus def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Hy" BROAD OMO:0003000 [BIRNLEX:734, NIFSTD:NeuroNames_abbrevSource] synonym: "hypothalamus" RELATED OMO:0003011 [Wikipedia:Hypothalamus] synonym: "preoptico-hypothalamic area" EXACT [] synonym: "preoptico-hypothalamic region" EXACT [] xref: AAO:0010484 xref: BAMS:HY xref: BAMS:Hy xref: BIRNLEX:734 xref: BM:Die-Hy xref: BTO:0000614 xref: CALOHA:TS-0469 xref: DHBA:10467 xref: EFO:0000107 xref: EHDAA2:0000802 xref: EHDAA:5446 xref: EMAPA:17536 xref: EV:0100225 xref: FMA:62008 xref: GAID:460 xref: galen:Hypothalamus xref: HBA:4540 xref: MA:0000173 xref: MAT:0000112 xref: MBA:1097 xref: MESH:D007031 xref: MIAA:0000112 xref: NCIT:C12458 xref: neuronames:292 {source="BIRNLEX:734"} xref: SCTID:264483005 xref: TAO:0000032 xref: UMLS:C0020663 {source="BIRNLEX:734", source="ncithesaurus:Hypothalamus"} xref: VHOG:0000179 xref: Wikipedia:Hypothalamus xref: XAO:0004070 xref: ZFA:0000032 is_a: UBERON:0002616 ! regional part of brain relationship: dubious_for_taxon NCBITaxon:7737 {notes="Lancelets possess a region similar to the hypothalamus (Murakami, 2005)"} relationship: mutually_spatially_disjoint_with UBERON:0001897 {source="ABA"} ! dorsal plus ventral thalamus relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0010225 {missing_from="FMA", source="EHDAA2", source="Wikipedia"} ! thalamic complex relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} relationship: present_in_taxon NCBITaxon:7742 relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000032", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the diencephalon ventral to the thalamus consisting of connecting fibers and is a center for control of the autonomous nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010484", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "hypothalamic" xsd:string property_value: homology_notes "For instance, the vertebrate ventral diencephalon generates the hypothalamus which functions as a major endocrine center in cooperation with the hypophysis, the anterior part of the pituitary gland, located just ventral to the hypothalamus. In the amphioxus brain, the presence of a hypothalamus-like structure has been reported associated with the ventrally located Hatschek's pit, the hypothetical hypophysial homologue. It is thus conceivable that a hypothalamus-like structure originally involved in endocrine functions may have already been present before the establishment of vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000179", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.008 Murakami Y, Uchida K, Rijli FM and Kuratani S, Evolution of the brain developmental plan: Insights from agnathans. Developmental Biology (2005)", source="http://bgee.unil.ch/"} property_value: taxon_notes "all vertebrates contain a hypothalamus" xsd:string {source="WP"} [Term] id: UBERON:0001899 name: epithalamus def: "Most dorsal part of the thalamus, comprising the pineal gland and habenular nuclei in most vertebrates. In a few vertebrates, it also includes the parietal eye. (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed, 2005, pg. 345-346." [BIRNLEX:1710] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithalamus" RELATED OMO:0003011 [Wikipedia:Epithalamus] synonym: "ETh" BROAD OMO:0003000 [BIRNLEX:1710, NIFSTD:NeuroNames_abbrevSource] xref: AAO:0010482 xref: BAMS:EPI xref: BAMS:Epi xref: BAMS:EpT xref: BAMS:ETh xref: BIRNLEX:1710 xref: BM:Die-Epi xref: BTO:0000175 xref: CALOHA:TS-2060 xref: DHBA:10451 xref: EFO:0000918 xref: EHDAA2:0000448 xref: EHDAA:5433 xref: EMAPA:17532 xref: EV:0100220 xref: FMA:62009 xref: GAID:455 xref: HBA:4520 xref: MA:0000172 xref: MAT:0000422 xref: MBA:958 xref: MESH:D019261 xref: MIAA:0000422 xref: NCIT:C12457 xref: neuronames:292 {source="BIRNLEX:1710"} xref: PBA:128013147 xref: SCTID:281487003 xref: TAO:0000509 xref: UMLS:C0152361 {source="BIRNLEX:1710", source="ncithesaurus:Epithalamus"} xref: VHOG:0000178 xref: Wikipedia:Epithalamus xref: ZFA:0000509 is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0001903 {source="ABA"} ! thalamic reticular nucleus relationship: mutually_spatially_disjoint_with UBERON:0002733 {source="ABA"} ! intralaminar nuclear group relationship: mutually_spatially_disjoint_with UBERON:0002736 {source="ABA"} ! lateral nuclear group of thalamus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus relationship: present_in_taxon NCBITaxon:7742 relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Epithalamus.png" xsd:anyURI property_value: external_definition "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010482", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The roof of the diencephalon lying above the thalamus. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-11, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000178", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "epithalamic" xsd:string property_value: homology_notes "The epithalamus has been historically conceived as a distinct neuroanatomical moiety within the diencephalon of all vertebrates. (...) The evolutionary origins of epithalamic structures are uncertain but asymmetry in this region is likely to have existed at the origin of the vertebrate, perhaps even the chordate, lineage.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000178", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910063.x Concha ML and Wilson SW, Asymmetry in the epithalamus of vertebrates. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001900 name: ventral thalamus def: "Anterior part of the diencephalon that lies between the dorsal thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO, modified]." [GO:0021539] comment: Some sources treat the subthalamus as distinct from the thalamus, separated by the zona limitans intrathalamica. In MA, the ventral thalamus is part of the thalamus. Butler Hodos who identify a dorsal to ventral sequence consisting of epithalamus, dorsal thalamus, ventral thalamus and hypothalamus. We solve this by considering dorsal and ventral thalamus distinct, and the label thalamus as being ambiguous w.r.t thalamus proper (dorsal thalamus) or wider thalamus (dorsal plus ventral) subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "perithalamus" RELATED [Wikipedia:Thalamus] synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] synonym: "SbTh" BROAD OMO:0003000 [BIRNLEX:708, NIFSTD:NeuroNames_abbrevSource] synonym: "subthalamic region" EXACT [BIRNLEX:708, FMA:62010] synonym: "subthalamus" EXACT [BIRNLEX:708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT OMO:0003011 [BIRNLEX:708] synonym: "ventral thalamus" EXACT [GO:0021539, MA:0000181] xref: BAMS:SbTh xref: BAMS:Ventral_thalamus xref: BAMS:VNT xref: BAMS:VT xref: BIRNLEX:708 xref: BM:Die-VTh xref: CALOHA:TS-2048 xref: DHBA:10461 xref: DMBA:16310 xref: EHDAA2:0004470 xref: EMAPA:35915 xref: EV:0100223 xref: FMA:62010 xref: GAID:653 xref: HBA:4504 xref: MA:0000181 xref: MESH:D020530 xref: NCIT:C52731 xref: neuronames:434 {source="BIRNLEX:708"} xref: SCTID:279332007 xref: TAO:0000458 xref: UMLS:C0152349 {source="BIRNLEX:708", source="ncithesaurus:Ventral_Thalamus"} xref: Wikipedia:Subthalamus xref: ZFA:0000458 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} relationship: present_in_taxon NCBITaxon:7742 relationship: present_in_taxon NCBITaxon:9606 property_value: has_relational_adjective "subthalamic" xsd:string [Term] id: UBERON:0001901 name: epithelium of trachea alt_id: UBERON:0003227 def: "The epithelial lining of the trachea which contains numerous ciliated cells." [ISBN:0-397-51047-0, MGI:cwg, MP:0002285] subset: human_reference_atlas subset: pheno_slim synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic] synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic] synonym: "epithelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea epithelial tissue" EXACT [OBOL:automatic] synonym: "trachea epithelium" EXACT [] synonym: "tracheal epithelium" EXACT [] synonym: "windpipe epithelial tissue" EXACT [OBOL:automatic] synonym: "windpipe epithelium" EXACT [OBOL:automatic] xref: BTO:0001389 xref: CALOHA:TS-1061 xref: EHDAA2:0002069 xref: EHDAA:5007 xref: EMAPA:16855 xref: EMAPA:18409 xref: FMA:62015 xref: MA:0001862 xref: NCIT:C33797 xref: UMLS:C1179002 {source="ncithesaurus:Tracheal_Epithelium"} xref: VHOG:0001045 is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0008397 ! tracheobronchial epithelium relationship: develops_from UBERON:0003258 ! endoderm of foregut relationship: part_of UBERON:0003126 ! trachea relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001902 name: epithelium of small intestine def: "An epithelium that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic] synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic] synonym: "epithelium of small bowel" EXACT [OBOL:automatic] synonym: "mid intestine epithelium" EXACT [ZFA:0005127] synonym: "small bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "small bowel epithelium" EXACT [OBOL:automatic] synonym: "small intestinal epithelium" EXACT [] synonym: "small intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "small intestine epithelium" EXACT [] xref: BTO:0001258 xref: CALOHA:TS-2104 xref: EMAPA:35778 xref: FMA:62017 xref: MA:0001553 xref: SCTID:45480009 xref: TAO:0005127 xref: ZFA:0005127 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0001204 ! mucosa of small intestine property_value: external_definition "Intestinal epithelium which lines the lumen of the mid intestine.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005127", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001903 name: thalamic reticular nucleus def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [Wikipedia:Thalamic_reticular_nucleus] subset: human_reference_atlas subset: uberon_slim synonym: "nuclei reticulares (thalami)" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus reticularis" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus reticularis thalami" EXACT OMO:0003011 [FMA:62026, FMA:TA] synonym: "nucleus reticularis thalami" RELATED OMO:0003011 [Wikipedia:Thalamic_reticular_nucleus] synonym: "nucleus reticulatus (thalami)" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus thalamicus reticularis" RELATED OMO:0003011 [NeuroNames:365] synonym: "reticular nuclear group" EXACT [] synonym: "reticular nucleus of thalamus" EXACT [] synonym: "reticular nucleus of the thalamus" EXACT [] synonym: "reticular nucleus thalamus (Arnold)" RELATED [NeuroNames:365] synonym: "reticular nucleus-2" EXACT [] synonym: "reticular thalamic nucleus" EXACT [] synonym: "reticulatum thalami (Hassler)" RELATED OMO:0003011 [NeuroNames:365] xref: BAMS:RT xref: BAMS:Rt xref: BIRNLEX:1721 xref: BM:Die-VTh-R xref: DHBA:10464 xref: EMAPA:35737 xref: EV:0100214 xref: FMA:62026 xref: HBA:4506 xref: MA:0000876 xref: MBA:262 xref: neuronames:365 {source="BIRNLEX:1721"} xref: SCTID:279164008 xref: Wikipedia:Thalamic_reticular_nucleus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: mutually_spatially_disjoint_with UBERON:0001899 {source="ABA"} ! epithalamus relationship: mutually_spatially_disjoint_with UBERON:0002733 {source="ABA"} ! intralaminar nuclear group relationship: mutually_spatially_disjoint_with UBERON:0002736 {source="ABA"} ! lateral nuclear group of thalamus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Constudthal.gif" xsd:anyURI property_value: external_ontology_notes "only MA considers this part of a subthalamus; MA also considers a subthalamus part of a thalamus" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001904 name: habenula def: "A segment of the epithalamus that has as its parts the habenular nuclei and the habenular commissure[FMA,modified]." [FMA:62032, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglion intercrurale" RELATED OMO:0003011 [NeuroNames:294] synonym: "ganglion interpedunculare" RELATED OMO:0003011 [NeuroNames:294] synonym: "habenula complex" EXACT OMO:0003011 [FMA:62032, FMA:TA] synonym: "habenulae" RELATED [] synonym: "habenular complex" RELATED [] synonym: "habenular nuclei" RELATED [] synonym: "Hb" BROAD OMO:0003000 [BIRNLEX:1611, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei habenulares" RELATED OMO:0003011 [NeuroNames:294] synonym: "nucleus habenularis" RELATED OMO:0003011 [NeuroNames:294] synonym: "pineal peduncle" RELATED [BTO:0003684] xref: BAMS:HB xref: BAMS:Hb xref: BIRNLEX:1611 xref: BTO:0003684 xref: EMAPA:35386 xref: EV:0100222 xref: FMA:62032 xref: GAID:619 xref: HBA:4522 xref: MA:0000830 xref: MESH:D019262 xref: neuronames:294 {source="BIRNLEX:1611"} xref: SCTID:362389008 xref: TAO:0000213 xref: UMLS:C0152362 {source="BIRNLEX:1611"} xref: Wikipedia:Habenula xref: ZFA:0000213 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001899 ! epithalamus relationship: present_in_taxon NCBITaxon:7762 {source="Butler, 1996, p. 303"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI property_value: external_definition "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000213", ontology="TAO", source="ZFIN:curator"} property_value: has_relational_adjective "habenular" xsd:string [Term] id: UBERON:0001905 name: pineal body def: "A midline, cone like structure located in the dorso-caudal roof of the 3rd ventricle, attached by peduncles to the habenular and posterior commissures. The stalk contains nerve fibers, blood vessels, connective tissue and parenchymal cells (Paxinos, The Rat Central Nervous System, 2nd ed, pg 399)." [BIRNLEX:1184] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "conarium" RELATED [BIRNLEX:1184] synonym: "corpus pineale" EXACT [] synonym: "epiphysis" RELATED INCONSISTENT [ZFA:0000019] synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] synonym: "frontal organ" RELATED [VHOG:0000051] synonym: "glandula pinealis" EXACT OMO:0003011 [FMA:62033, FMA:TA] synonym: "Pi" BROAD OMO:0003000 [BIRNLEX:1184, NIFSTD:NeuroNames_abbrevSource] synonym: "pineal" RELATED [VHOG:0000051] synonym: "pineal gland" EXACT [FMA:62033] synonym: "pineal gland (Galen)" RELATED [NeuroNames:297] synonym: "pineal organ" EXACT [ZFA:0000019] synonym: "stirnorgan" RELATED [VHOG:0000051] xref: AAO:0010549 xref: BAMS:Pi xref: BAMS:PIN xref: BIRNLEX:1184 xref: BM:P xref: BTO:0001067 xref: CALOHA:TS-0789 xref: DHBA:10460 xref: EFO:0000865 xref: EHDAA2:0001466 xref: EHDAA:7523 xref: EMAPA:18778 xref: EV:0100131 xref: EV:0100221 xref: FMA:62033 xref: GAID:453 xref: galen:PinealGland xref: HBA:4532 xref: MA:0000175 xref: MAT:0000448 xref: MBA:953 xref: MESH:D010870 xref: NCIT:C12398 xref: neuronames:297 {source="BIRNLEX:1184"} xref: NLXANAT:1010009 xref: SCTID:181126002 xref: TAO:0000019 xref: UMLS:C0031939 {source="ncithesaurus:Pineal_Gland", source="BIRNLEX:1184"} xref: VHOG:0000051 xref: Wikipedia:Pineal_gland xref: XAO:0000160 xref: ZFA:0000019 is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ relationship: mutually_spatially_disjoint_with UBERON:0001941 {source="ABA"} ! lateral habenular nucleus relationship: mutually_spatially_disjoint_with UBERON:0001942 {source="ABA"} ! medial habenular nucleus relationship: part_of UBERON:0015238 {source="ZFA", source="various"} ! pineal complex relationship: present_in_taxon NCBITaxon:117569 {source="Hardisty, p. 310"} relationship: present_in_taxon NCBITaxon:9606 property_value: axiom_lost_from_external_ontology "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010549", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "epiphyseal" xsd:string property_value: has_relational_adjective "epiphysial" xsd:string property_value: homology_notes "The pineal gland has evolved from a part of the epiphyseal complex of anamniotes, which includes a median light-receptive pineal eye, parietal eye, or both.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000051", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.516", source="http://bgee.unil.ch/"} property_value: taxon_notes "lobulated in humans, homogeneous in mouse. Calcifies with age in humans." xsd:string [Term] id: UBERON:0001906 name: subthalamic nucleus def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [GO:0021763] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "body of Forel" EXACT [] synonym: "body of Luys" EXACT [] synonym: "corpus Luysi" RELATED [Wikipedia:Subthalamic_nucleus] synonym: "corpus subthalamicum" RELATED OMO:0003011 [Wikipedia:Subthalamic_nucleus] synonym: "Luy's body" RELATED [Wikipedia:Subthalamic_nucleus] synonym: "Luys' body" RELATED [BTO:0002252] synonym: "Luys' nucleus" EXACT [] synonym: "nucleus of corpus luysii" EXACT [] synonym: "nucleus of Luys" EXACT [Wikipedia:Subthalamic_nucleus] synonym: "nucleus subthalamicus" EXACT OMO:0003011 [BTO:0002252, Wikipedia:Subthalamic_nucleus] synonym: "subthalamic nucleus (of Luys)" EXACT [] synonym: "subthalamic nucleus of Luys" RELATED [Wikipedia:Subthalamic_nucleus] xref: BAMS:STh xref: BAMS:STN xref: BAMS:SUB xref: BM:Die-Sb xref: BTO:0002252 xref: CALOHA:TS-1154 xref: DHBA:10466 xref: EFO:0001392 xref: EMAPA:35839 xref: EV:0100224 xref: FMA:62035 xref: GAID:655 xref: HBA:4518 xref: MA:0000877 xref: MBA:470 xref: MESH:D020531 xref: NCIT:C12454 xref: neuronames:435 xref: NLXANAT:1010002 xref: SCTID:361575000 xref: UMLS:C0152355 {source="ncithesaurus:Subthalamic_Nucleus"} xref: Wikipedia:Subthalamic_nucleus is_a: UBERON:0015233 ! nucleus of dorsal thalamus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: mutually_spatially_disjoint_with UBERON:0001907 {source="ABA"} ! zona incerta relationship: mutually_spatially_disjoint_with UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001933 {source="ABA"} ! retrochiasmatic area relationship: mutually_spatially_disjoint_with UBERON:0002430 {source="ABA"} ! lateral hypothalamic area relationship: part_of UBERON:0002776 {notes="part of hypothalamus in ABA"} ! ventral nuclear group relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Basal-ganglia-coronal-sections-large.png" xsd:anyURI property_value: external_definition "Lens shaped nucleus lying in the subthalamu[NLXANAT:1010002]s" xsd:string {source="NLXANAT:1010002"} [Term] id: UBERON:0001907 name: zona incerta def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to 'limbic-motor integration' such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a 'region of which nothing certain can be said'. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschênes of Université Laval noted that the 'zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ' [WP,unvetted]." [Wikipedia:Zona_incerta] subset: human_reference_atlas subset: uberon_slim synonym: "nucleus of the zona incerta" RELATED [BAMS:ZI] synonym: "zona incerta proper" RELATED [BAMS:ZI] xref: BAMS:ZI xref: BM:Die-VTh-ZI xref: BTO:0003146 xref: DHBA:10463 xref: EMAPA:35930 xref: FMA:62038 xref: HBA:4507 xref: MA:0000878 xref: MBA:797 xref: MESH:D065820 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:438 xref: SCTID:369186007 xref: Wikipedia:Zona_incerta is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: mutually_spatially_disjoint_with UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001933 {source="ABA"} ! retrochiasmatic area relationship: mutually_spatially_disjoint_with UBERON:0002430 {source="ABA"} ! lateral hypothalamic area relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001908 name: optic tract def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [NIFSTD, Wikipedia:Optic_tract, ZFIN:curator] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "optic lemniscus" EXACT [] synonym: "optic tracts" RELATED OMO:0003004 [ZFA:0000252] synonym: "tractus optici" RELATED OMO:0003011 [NeuroNames:460] synonym: "tractus opticus" RELATED OMO:0003011 [Wikipedia:Optic_tract] synonym: "visual pathway" RELATED [GAID:735] xref: BAMS:opt xref: BIRNLEX:1684 xref: BM:Tel-OT xref: DHBA:10589 xref: DMBA:17785 xref: EMAPA:35617 xref: FMA:62046 xref: GAID:735 xref: HBA:9309 xref: MA:0001099 xref: MBA:125 xref: MESH:D014795 xref: NCIT:C33218 xref: neuronames:460 {source="BIRNLEX:1684"} xref: SCTID:280952003 xref: TAO:0000252 xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract", source="BIRNLEX:1684"} xref: VHOG:0001164 xref: Wikipedia:Optic_tract xref: XAO:0004101 xref: ZFA:0000252 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0002104 ! visual system relationship: part_of UBERON:0003931 ! diencephalic white matter relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: editor_note "relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'" xsd:string [Term] id: UBERON:0001909 name: habenular commissure def: "A brain commissure that is situated in front of the pineal gland and connects the habenular nucleus on one side of the diencephalon with that on the other side." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Habenular_commissure] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "commissura habenularis" RELATED OMO:0003011 [NeuroNames:299] synonym: "commissura habenularum" EXACT OMO:0003011 [Wikipedia:Habenular_commissure, ZFA:0000359] synonym: "commissure habenularum" EXACT [MP:0008231] synonym: "habenular commissure (Haller)" RELATED [NeuroNames:299] synonym: "habenular commisure" RELATED [BAMS:hbc] synonym: "HBC" BROAD OMO:0003000 [BIRNLEX:1609, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:hbc xref: BAMS:HC xref: BAMS:HG xref: BIRNLEX:1609 xref: BM:Die-Epi-HC xref: DHBA:10566 xref: DMBA:17768 xref: EMAPA:37875 {source="MA:th"} xref: FMA:62048 xref: HBA:9227 xref: MBA:611 xref: neuronames:299 {source="BIRNLEX:1609"} xref: SCTID:279335009 xref: TAO:0000359 xref: UMLS:C0152363 {source="BIRNLEX:1609"} xref: Wikipedia:Habenular_commissure xref: ZFA:0000359 is_a: UBERON:0005341 {source="MP"} ! ventral commissure is_a: UBERON:0011590 ! commissure of diencephalon is_a: UBERON:0025261 ! thalamic fiber tract relationship: part_of UBERON:0001904 {source="FMA"} ! habenula relationship: part_of UBERON:0003931 {source="ZFA-modified"} ! diencephalic white matter property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI [Term] id: UBERON:0001910 name: medial forebrain bundle def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [Wikipedia:Medial_forebrain_bundle] subset: uberon_slim subset: vertebrate_core synonym: "fasciculus longitudinalis telencephali medialis" RELATED OMO:0003011 [NeuroNames:433] synonym: "fasciculus medialis telencephali" RELATED OMO:0003011 [Wikipedia:Medial_forebrain_bundle] synonym: "fasciculus medialis telencephalicus" RELATED OMO:0003011 [NeuroNames:433] synonym: "fasciculus prosencephalicus medialis" RELATED OMO:0003011 [NeuroNames:433] synonym: "medial forebrain bundles" RELATED OMO:0003004 [ZFA:0005111] synonym: "medial forebrain fasciculus" EXACT [] synonym: "median forebrain bundle" RELATED [NeuroNames:433] synonym: "MFB" BROAD OMO:0003000 [BIRNLEX:908, NIFSTD:NeuroNames_abbrevSource] synonym: "telencephalic medial fasciculus" EXACT [] xref: BAMS:mfb xref: BIRNLEX:908 xref: DHBA:10587 xref: FMA:62064 xref: GAID:736 xref: HBA:265505190 xref: MBA:54 xref: MESH:D008474 xref: NCIT:C13083 xref: neuronames:433 {source="BIRNLEX:908"} xref: TAO:0005111 xref: UMLS:C0025055 {source="BIRNLEX:908", source="ncithesaurus:Medial_Forebrain_Bundle"} xref: Wikipedia:Medial_forebrain_bundle xref: ZFA:0005111 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001898 {source="NIFSTD"} ! hypothalamus property_value: external_ontology_notes "a pathway in NCIT" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0001911 name: mammary gland def: "A specialized accessory gland of the skin of mammals that secretes milk. The gland is typically only developed in females, and regresses in males." [BTO:0000817, http://orcid.org/0000-0002-6601-2165, Wikipedia:Mammary_gland] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "Brustdruese" RELATED [BTO:0000817] synonym: "dug" RELATED [Wikipedia:Mammary_gland] synonym: "glandula mammaria" EXACT OMO:0003011 [FMA:57983, FMA:TA] synonym: "glandula mammaria" RELATED OMO:0003011 [Wikipedia:Mammary_gland] synonym: "lactiferous gland" EXACT [FMA:62088] synonym: "lobe of breast" NARROW [] synonym: "lobe of mammary gland" RELATED [FMA:62088] synonym: "mamma" RELATED [BTO:0000817] synonym: "mammae" RELATED OMO:0003004 [] synonym: "milk patch" NARROW [NCBITaxon:9255] xref: BTO:0000817 xref: CALOHA:TS-0595 xref: EFO:0000854 xref: EMAPA:17759 xref: EV:0100125 xref: FMA:286452 xref: MA:0000145 xref: MAT:0000073 xref: MESH:D008321 xref: MIAA:0000073 xref: NCIT:C12367 xref: SCTID:361720005 xref: UMLS:C0929301 {source="ncithesaurus:Mammary_Gland"} xref: VHOG:0000398 xref: Wikipedia:Mammary_gland is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0019319 ! exocrine gland of integumental system relationship: develops_from UBERON:0005333 ! mammary bud relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg" xsd:anyURI property_value: editor_note "Originally this was classified as a female reproductive structure, as it was in the MP in 2011" xsd:string property_value: external_definition "Any of the milk-producing apocrine glands typically occurring in pairs in female mammals and consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000398", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/mammary+gland"} property_value: external_ontology_notes "The BTO class represents the combination of nipple plus lobe" xsd:string property_value: external_ontology_notes "The FMA class represents an individule lobe. The nipple is not a part" xsd:string property_value: external_ontology_notes "The MA class represents a composite structure, including the nipple, fat, connective tissue, smooth muscle as parts" xsd:string property_value: has_relational_adjective "mammary" xsd:string property_value: homology_notes "The detailed similarities of mammary glands in living monotremes, marsupials, and eutherians argue for a monophyletic origin of these glands, perhaps by the combination of parts of preexisting sebaceous and sweat glands.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000398", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.224", source="http://bgee.unil.ch/"} property_value: taxon_notes "A mouse mammary gland contains a single duct or sinus, forming 5-10 secondary ducts" xsd:string property_value: taxon_notes "The male Dayak fruit bat has lactating mammary glands" xsd:string property_value: taxon_notes "The mammary glands of humans are in the thoracid/breast region. In other mammals they may be located elsewhere on the mammary ridges." xsd:string [Term] id: UBERON:0001912 name: lobule of mammary gland def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA]." [FMA:62090] subset: pheno_slim subset: uberon_slim synonym: "acinus of mammary gland" EXACT [FMA:62090] synonym: "lactiferous acinus" EXACT [FMA:62090] synonym: "lactiferous gland lobule" EXACT [FMA:62090] synonym: "lactiferous lobule" EXACT [FMA:62090] synonym: "lobule of lactiferous gland" EXACT [FMA:62090] synonym: "lobule of mammary gland" EXACT [FMA:62090] synonym: "mammary acinus" EXACT [FMA:62090] synonym: "mammary gland lobule" EXACT [MA:0000793] xref: EMAPA:36634 xref: FMA:62090 xref: MA:0000793 is_a: UBERON:0009911 {source="FMA"} ! lobule relationship: part_of UBERON:0001911 ! mammary gland property_value: editor_note "TODO - ensure correct terminology for lobes/lobules. In mouse there are no distinct lobes (ISBN:0123813611), here lobule appears to be synonymous with acinus" xsd:string [Term] id: UBERON:0001913 name: milk def: "An emulsion of fat globules within a fluid that is secreted by the mammary gland during lactation." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "mammary gland milk" EXACT [] xref: BTO:0000868 xref: CALOHA:TS-0636 xref: EMAPA:36540 xref: ENVO:02000031 xref: EV:0100126 xref: FMA:62100 xref: GAID:1230 xref: galen:Milk xref: MA:0002552 xref: MAT:0000056 xref: MESH:D008892 xref: MIAA:0000056 xref: NCIT:C13401 xref: UMLS:C1511310 {source="ncithesaurus:Breast_Fluid_or_Secretion"} xref: VHOG:0001263 xref: Wikipedia:Breast_milk is_a: UBERON:0006314 ! bodily fluid is_a: UBERON:0006539 ! mammary gland fluid/secretion property_value: editor_note "to axiomatize the different forms of mammary gland secretion an ontology of the phases of pregnancy/lactation is required. Using the existing GO def of lactation is circular." xsd:string property_value: external_ontology_notes "ncit:Milk refers specifically to cow milk" xsd:string {external_ontology="ncit"} property_value: homology_notes "The detailed similarities of mammary glands in living monotremes, marsupials, and eutherians argue for a monophyletic origin of these glands, perhaps by the combination of parts of preexisting sebaceous and sweat glands.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001263", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.224", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001914 name: colostrum def: "The thin, yellow, serous fluid secreted by the mammary glands during pregnancy and immediately postpartum before lactation begins. It consists of immunologically active substances, white blood cells, water, protein, fat, and carbohydrates." [MESH:A12.200.194, Wikipedia:Colostrum] subset: uberon_slim xref: BTO:0000276 xref: CALOHA:TS-0167 xref: FMA:62101 xref: GAID:1159 xref: MA:0002551 xref: MESH:D003126 xref: NCIT:C32348 xref: UMLS:C0009413 {source="ncithesaurus:Colostrum"} xref: Wikipedia:Colostrum is_a: UBERON:0006539 ! mammary gland fluid/secretion property_value: has_relational_adjective "colostral" xsd:string [Term] id: UBERON:0001915 name: endothelium of capillary def: "An endothelium that is part of a capillary [Automatically generated definition]." [OBOL:automatic] synonym: "blood capillary endothelium" EXACT [OBOL:automatic] synonym: "capillary endothelium" EXACT [] synonym: "capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel" EXACT [OBOL:automatic] xref: BTO:0004954 xref: CALOHA:TS-0112 xref: EMAPA:36292 xref: FMA:62114 xref: MA:0000711 xref: NCIT:C49215 xref: UMLS:C0006904 {source="ncithesaurus:Capillary_Endothelium"} is_a: UBERON:0008339 ! microvascular endothelium relationship: part_of UBERON:0001982 ! capillary [Term] id: UBERON:0001916 name: endothelium of arteriole def: "An endothelium that is part of an arteriole [Automatically generated definition]." [OBOL:automatic] synonym: "arteriole endothelium" EXACT [] xref: EMAPA:36286 xref: FMA:62115 xref: MA:0000705 xref: NCIT:C49192 xref: UMLS:C1179024 {source="ncithesaurus:Arteriole_Endothelium"} is_a: UBERON:0004700 ! arterial system endothelium is_a: UBERON:0008339 ! microvascular endothelium relationship: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0001917 name: endothelium of artery def: "An endothelium that is part of an artery [Automatically generated definition]." [OBOL:automatic] synonym: "arterial endothelium" EXACT [] synonym: "artery endothelium" EXACT [] xref: AAO:0011013 xref: BTO:0004757 xref: EMAPA:35148 xref: FMA:62116 xref: MA:0000707 xref: NCIT:C49194 xref: UMLS:C1179025 {source="ncithesaurus:Artery_Endothelium"} xref: VHOG:0001215 xref: XAO:0000357 is_a: UBERON:0003915 ! endothelial tube is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium relationship: part_of UBERON:0001637 ! artery property_value: external_definition "The endothelium is the thin layer of cells that lines the interior surface of blood vessels, forming an interface between circulating blood in the lumen and the rest of the vessel wall.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011013", ontology="AAO", source="XAO:curator"} property_value: homology_notes "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001215", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001918 name: endothelium of venule def: "An endothelium that is part of a venule [Automatically generated definition]." [OBOL:automatic] synonym: "venule endothelium" EXACT [] xref: EMAPA:36290 xref: FMA:62117 xref: MA:0000716 xref: NCIT:C49319 xref: UMLS:C1179026 {source="ncithesaurus:Venule_Endothelium"} is_a: UBERON:0004701 ! venous system endothelium is_a: UBERON:0008339 ! microvascular endothelium relationship: part_of UBERON:0001979 ! venule [Term] id: UBERON:0001919 name: endothelium of vein def: "An endothelium that is part of a vein [Automatically generated definition]." [OBOL:automatic] synonym: "vein endothelium" EXACT [] synonym: "veinous endothelium" RELATED [VHOG:0001216] synonym: "venous endothelium" EXACT [] xref: AAO:0011110 xref: BTO:0004756 xref: EMAPA:36288 xref: FMA:62118 xref: MA:0000712 xref: NCIT:C49317 xref: UMLS:C1179027 {source="ncithesaurus:Vein_Endothelium"} xref: VHOG:0001216 xref: XAO:0000358 is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium relationship: part_of UBERON:0001638 ! vein property_value: homology_notes "Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001216", ontology="VHOG", source="ISBN:978-0030259821 Ruppert EE, Fox RS, Barnes RD, Invertebrate zoology: a functional evolutionary approach (2003) p.207", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001920 name: paraventricular nucleus of thalamus def: "The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle." [Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nuclei paraventriculares thalami" EXACT OMO:0003011 [FMA:62152, FMA:TA] synonym: "nucleus paramedianus (Hassler)" RELATED OMO:0003011 [NeuroNames:308] synonym: "nucleus paraventricularis thalami" RELATED OMO:0003011 [NeuroNames:308] synonym: "paraventricular gray" EXACT [] synonym: "paraventricular nuclei" RELATED OMO:0003004 [] synonym: "paraventricular nuclei of thalamus" EXACT OMO:0003004 [] synonym: "paraventricular nucleus of the thalamus" RELATED [NeuroNames:308] synonym: "paraventricular thalamic nucleus" EXACT [] synonym: "PV" BROAD OMO:0003000 [BIRNLEX:764, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PV xref: BAMS:PVT xref: BIRNLEX:764 xref: BM:Die-Th-Pa xref: BTO:0002460 xref: DHBA:10457 xref: EMAPA:35666 xref: FMA:62152 xref: HBA:4533 xref: MA:0000866 xref: MBA:149 xref: neuronames:308 {source="BIRNLEX:764"} xref: SCTID:369163000 xref: UMLS:C0175253 {source="BIRNLEX:764"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: mutually_spatially_disjoint_with UBERON:0002992 {source="ABA"} ! paratenial nucleus relationship: part_of UBERON:0002705 {source="FMA"} ! midline nuclear group relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg" xsd:anyURI [Term] id: UBERON:0001921 name: reuniens nucleus subset: human_reference_atlas synonym: "medioventral nucleus" EXACT [FMA:62153] synonym: "nucleus endymalis (Hassler)" RELATED OMO:0003011 [NeuroNames:309] synonym: "nucleus of reunions" RELATED [NeuroNames:309] synonym: "nucleus reuniens" EXACT [] synonym: "nucleus reuniens (Malone)" RELATED [NeuroNames:309] synonym: "nucleus reuniens thalami" RELATED OMO:0003011 [NeuroNames:309] synonym: "Re" BROAD OMO:0003000 [BIRNLEX:770, NIFSTD:NeuroNames_abbrevSource] synonym: "reuniens nucleus of the thalamus" RELATED [BAMS:RE] synonym: "reuniens thalamic nucleus" EXACT [FMA:62153] xref: BAMS:RE xref: BAMS:Re xref: BIRNLEX:770 xref: BTO:0002459 xref: DHBA:10403 xref: EMAPA:35602 xref: FMA:62153 xref: MA:0000865 xref: MBA:181 xref: neuronames:309 {source="BIRNLEX:770"} xref: SCTID:369164006 xref: UMLS:C0228327 {source="BIRNLEX:770"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001922 name: parafascicular nucleus subset: human_reference_atlas subset: pheno_slim synonym: "nuclei parafasciculares thalami" EXACT [BIRNLEX:952] synonym: "nucleus parafascicularis" EXACT [BIRNLEX:952] synonym: "nucleus parafascicularis (Hassler)" EXACT [BIRNLEX:952] synonym: "nucleus parafascicularis thalami" EXACT [BIRNLEX:952] synonym: "parafascicular nucleus (vogt)" EXACT [BIRNLEX:952] synonym: "parafascicular nucleus of thalamus" EXACT [] synonym: "parafascicular nucleus of the thalamus" EXACT [BIRNLEX:952] synonym: "parafascicular thalamic nucleus" EXACT [] synonym: "PF" BROAD OMO:0003000 [BIRNLEX:952, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PF xref: BIRNLEX:952 xref: BM:Die-Th-Pf xref: DHBA:10450 xref: DMBA:16442 xref: EMAPA:35659 xref: EV:0100202 xref: FMA:62166 xref: HBA:4439 xref: MA:0000874 xref: MBA:930 xref: NCIT:C33260 xref: neuronames:324 {source="BIRNLEX:952"} xref: SCTID:279150008 xref: UMLS:C0228352 {source="ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus", source="BIRNLEX:952"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: mutually_spatially_disjoint_with UBERON:0001923 {source="ABA"} ! central medial nucleus relationship: mutually_spatially_disjoint_with UBERON:0001924 {source="ABA"} ! paracentral nucleus relationship: mutually_spatially_disjoint_with UBERON:0002955 {source="ABA"} ! rhomboidal nucleus relationship: mutually_spatially_disjoint_with UBERON:0003036 {source="ABA"} ! central lateral nucleus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001923 name: central medial nucleus def: "A small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929] subset: pheno_slim synonym: "central medial nucleus of thalamus" EXACT [] synonym: "central medial nucleus of the thalamus" RELATED [NeuroNames:321] synonym: "central medial nucleus thalamus (rioch 1928)" EXACT [BIRNLEX:971] synonym: "central medial thalamic nucleus" EXACT [] synonym: "centromedial thalamic nucleus" RELATED [BAMS:CM] synonym: "CM" BROAD OMO:0003000 [BIRNLEX:971, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus centralis medialis" EXACT [BIRNLEX:971] synonym: "nucleus centralis medialis thalami" EXACT [BIRNLEX:971] xref: BAMS:CM xref: BAMS:CMN xref: BAMS:GMN xref: BIRNLEX:971 xref: BM:Die-CeM xref: BTO:0003753 xref: DHBA:10445 xref: EMAPA:35206 xref: FMA:62171 xref: HBA:4438 xref: MA:0000872 xref: MBA:599 xref: neuronames:321 {source="BIRNLEX:971"} xref: PBA:128012616 xref: SCTID:279161000 xref: UMLS:C0920328 {source="BIRNLEX:971"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: mutually_spatially_disjoint_with UBERON:0001922 {source="ABA"} ! parafascicular nucleus relationship: mutually_spatially_disjoint_with UBERON:0001924 {source="ABA"} ! paracentral nucleus relationship: mutually_spatially_disjoint_with UBERON:0002955 {source="ABA"} ! rhomboidal nucleus relationship: mutually_spatially_disjoint_with UBERON:0003036 {source="ABA"} ! central lateral nucleus relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group [Term] id: UBERON:0001924 name: paracentral nucleus def: "One of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928] subset: pheno_slim synonym: "nucleus centralis lateralis superior (kusama)" EXACT [BIRNLEX:981] synonym: "nucleus paracentral" EXACT [BIRNLEX:981] synonym: "nucleus paracentral thalami" EXACT [BIRNLEX:981] synonym: "nucleus paracentralis" RELATED OMO:0003011 [NeuroNames:322] synonym: "nucleus paracentralis thalami" EXACT OMO:0003011 [FMA:62172, FMA:TA] synonym: "paracentral nucleus of thalamus" EXACT [] synonym: "paracentral nucleus of the thalamus" RELATED [NeuroNames:322] synonym: "paracentral nucleus thalamus (gurdjian 1927)" EXACT [BIRNLEX:981] synonym: "paracentral thalamic nucleus" EXACT [] synonym: "PC" BROAD OMO:0003000 [BIRNLEX:981, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PAC xref: BAMS:PC xref: BAMS:PCM xref: BAMS:PCN xref: BIRNLEX:981 xref: BM:Die-Th-Pc xref: DHBA:10446 xref: DMBA:16416 xref: EMAPA:35658 xref: EV:0100204 xref: FMA:62172 xref: HBA:4435 xref: MA:0000873 xref: MBA:907 xref: neuronames:322 {source="BIRNLEX:981"} xref: SCTID:279152000 xref: UMLS:C0228354 {source="BIRNLEX:981"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: mutually_spatially_disjoint_with UBERON:0001922 {source="ABA"} ! parafascicular nucleus relationship: mutually_spatially_disjoint_with UBERON:0001923 {source="ABA"} ! central medial nucleus relationship: mutually_spatially_disjoint_with UBERON:0002955 {source="ABA"} ! rhomboidal nucleus relationship: mutually_spatially_disjoint_with UBERON:0003036 {source="ABA"} ! central lateral nucleus relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group property_value: editor_note "TODO - relationships" xsd:string [Term] id: UBERON:0001925 name: ventral lateral nucleus of thalamus def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_lateral_nucleus] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "lateral ventral nucleus of thalamus" EXACT [FMA:62186] synonym: "lateral-ventral nuclei of thalamus" RELATED [BAMS:VTh] synonym: "nuclei ventrales laterales thalami" EXACT [FMA:TA] synonym: "nuclei ventrales laterales thalami" RELATED [BTO:0002463] synonym: "nucleus ventralis intermedius" EXACT [BIRNLEX:1237] synonym: "nucleus ventralis lateralis" EXACT [BIRNLEX:1237] synonym: "nucleus ventralis lateralis thalami" EXACT [BIRNLEX:1237] synonym: "nucleus ventralis thalami lateralis" EXACT [BIRNLEX:1237] synonym: "nucleus ventrolateralis thalami" EXACT [BIRNLEX:1237] synonym: "ventral lateral complex of thalamus" EXACT [FMA:62186] synonym: "ventral lateral nuclei of thalamus" RELATED [BTO:0002463] synonym: "ventral lateral nucleus" EXACT [FMA:62186] synonym: "ventral lateral nucleus of thalamus" EXACT [FMA:62186] synonym: "ventral lateral thalamic nuclei" EXACT [FMA:62186] synonym: "ventral lateral thalamic nucleus" EXACT [BIRNLEX:1237] synonym: "ventrolateral complex" RELATED [BAMS:VL] synonym: "ventrolateral thalamic nucleus" EXACT [FMA:62186] synonym: "VL" BROAD OMO:0003000 [BIRNLEX:1237, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VL xref: BAMS:VTh xref: BIRNLEX:1237 xref: BM:Die-Th-VL xref: BTO:0002463 xref: DHBA:10420 xref: DMBA:16428 xref: EMAPA:36654 xref: FMA:62186 xref: HBA:12925 xref: NCIT:C33862 xref: neuronames:337 {source="BIRNLEX:1237"} xref: SCTID:279146001 xref: TAO:0000306 xref: UMLS:C0228339 {source="BIRNLEX:1237", source="ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus"} xref: Wikipedia:Ventral_lateral_nucleus xref: ZFA:0000306 is_a: UBERON:0015233 ! nucleus of dorsal thalamus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI [Term] id: UBERON:0001926 name: lateral geniculate body def: "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe." [ISBN:0-683-40008-8, MP:0004165] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "corpus geniculatum externum" RELATED [BTO:0004367] synonym: "corpus geniculatum laterale" RELATED [BTO:0004367] synonym: "corpus geniculatum laterales" EXACT [BIRNLEX:1662] synonym: "corpus geniculatus lateralis" RELATED OMO:0003011 [NeuroNames:352] synonym: "external geniculate body" RELATED [Wikipedia:Lateral_geniculate_nucleus] synonym: "lateral geniculate complex" EXACT [] synonym: "lateral geniculate nucleus" EXACT [] synonym: "LGB" RELATED OMO:0003000 [BTO:0004367] synonym: "LGN" BROAD OMO:0003000 [BIRNLEX:1662, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati lateralis" RELATED OMO:0003011 [BAMS:LG, NeuroNames:352] synonym: "nucleus geniculatus lateralis" EXACT [BIRNLEX:1662] xref: BAMS:C.gl. xref: BAMS:LG xref: BIRNLEX:1662 xref: BTO:0004366 xref: BTO:0004367 xref: DHBA:10429 xref: EFO:0001988 xref: EMAPA:35478 xref: EV:0100219 xref: FMA:62209 xref: MA:0000869 xref: NCIT:C32556 xref: neuronames:352 {source="BIRNLEX:1662"} xref: PBA:128013070 xref: SCTID:362377006 xref: UMLS:C0086526 {source="ncithesaurus:External_Geniculate_Body", source="BIRNLEX:1662"} xref: Wikipedia:Lateral_geniculate_body is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png" xsd:anyURI property_value: external_ontology_notes "BTO has distinct classes for body and nucleus, but other sources treat as identical" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0001927 name: medial geniculate body def: "Nuclear complex of the thalamus situated on the caudal, subpial aspect of the thalamus (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 622)." [BIRNLEX:1670] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "corpus geniculatum mediale" EXACT [BIRNLEX:1670] synonym: "corpus geniculatus medialis" RELATED OMO:0003011 [NeuroNames:355] synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body] synonym: "medial geniculate complex" EXACT [] synonym: "medial geniculate complex of dorsal thalamus" RELATED [BAMS:MG] synonym: "medial geniculate nuclei" EXACT [] synonym: "medial geniculate nucleus" EXACT [] synonym: "MGB" RELATED [BTO:0002674] synonym: "MGN" BROAD OMO:0003000 [BIRNLEX:1670, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei corporis geniculati medialis" EXACT OMO:0003011 [FMA:62211, FMA:TA] synonym: "nucleus corporis geniculati medialis" RELATED OMO:0003011 [NeuroNames:355] synonym: "nucleus geniculatus medialis" RELATED OMO:0003011 [NeuroNames:355] xref: BAMS:C.gm. xref: BAMS:MG xref: BIRNLEX:1670 xref: BM:Die-Th-MG xref: BTO:0002674 xref: DHBA:10434 xref: DMBA:16462 xref: EFO:0001968 xref: EMAPA:35546 xref: EV:0100218 xref: FMA:62211 xref: HBA:12926 xref: MA:0000870 xref: MBA:475 xref: NCIT:C32843 xref: neuronames:355 {source="BIRNLEX:1670"} xref: SCTID:362378001 xref: UMLS:C0086596 {source="ncithesaurus:Internal_Geniculate_Body", source="BIRNLEX:1670"} xref: Wikipedia:Medial_geniculate_body is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019269 ! gray matter of diencephalon relationship: mutually_spatially_disjoint_with UBERON:0002479 {source="ABA"} ! dorsal lateral geniculate nucleus relationship: part_of UBERON:0002105 {source="NIFSTD"} ! vestibulo-auditory system relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI [Term] id: UBERON:0001928 name: preoptic area def: "Area of the forebrain between the anterior commissure and optic chiasm." [Wikipedia:Preoptic_area, ZFIN:curator] subset: efo_slim subset: uberon_slim subset: vertebrate_core synonym: "area hypothalamica rostralis" RELATED [BTO:0001796] synonym: "area praeoptica" RELATED [] synonym: "area preoptica" RELATED OMO:0003011 [Wikipedia:Preoptic_area] synonym: "nuclei preoptici" RELATED OMO:0003011 [NeuroNames:377] synonym: "POA" BROAD OMO:0003000 [BIRNLEX:1706, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] synonym: "preoptic hypothalamic area" RELATED [BTO:0001796] synonym: "preoptic hypothalamic region" RELATED [BTO:0001796] synonym: "preoptic nuclei" EXACT [] synonym: "preoptic region" RELATED [] synonym: "preoptic region of hypothalamus" EXACT [] synonym: "regio hypothalamica anterior" RELATED [BTO:0001796] xref: BAMS:POA xref: BIRNLEX:1706 xref: BM:Die-Hy-POA xref: BTO:0001796 xref: CALOHA:TS-0822 xref: DMBA:15577 xref: EFO:0002523 xref: EMAPA:36655 xref: FMA:62313 xref: GAID:644 xref: HBA:4541 xref: MESH:D011301 xref: neuronames:377 {source="BIRNLEX:1706"} xref: SCTID:362382004 xref: TAO:0000470 xref: UMLS:C0033063 {source="BIRNLEX:1706"} xref: UMLS:C1284641 {source="BIRNLEX:1706"} xref: Wikipedia:Preoptic_area xref: ZFA:0000470 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon relationship: present_in_taxon NCBITaxon:7742 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: external_definition "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000470", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "Located in the hypothalamus in amniotes[PMC4038951]" xsd:string [Term] id: UBERON:0001929 name: supraoptic nucleus def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Supraoptic_nucleus] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus supraopticus" EXACT [BTO:0002697] synonym: "nucleus supraopticus" RELATED OMO:0003011 [Wikipedia:Supraoptic_nucleus] synonym: "nucleus supraopticus hypothalami" RELATED OMO:0003011 [NeuroNames:385] synonym: "nucleus tangentialis (Riley)" RELATED OMO:0003011 [NeuroNames:385] synonym: "SO" BROAD OMO:0003000 [BIRNLEX:1411, NIFSTD:NeuroNames_abbrevSource] synonym: "supra-optic nucleus" EXACT [] synonym: "supraoptic nucleus of hypothalamus" EXACT [] synonym: "supraoptic nucleus proper (Lenhossek)" RELATED [NeuroNames:385] synonym: "supraoptic nucleus, general" RELATED [NeuroNames:385] synonym: "supraoptic nucleus, proper" RELATED [BAMS:SO] xref: BAMS:SO xref: BAMS:SON xref: BIRNLEX:1411 xref: BM:Die-Hy-SON xref: BTO:0002697 xref: DHBA:10481 xref: DMBA:15633 xref: EFO:0002476 xref: EMAPA:35843 xref: EV:0100227 xref: FMA:62317 xref: GAID:646 xref: HBA:12907 xref: MA:0000849 xref: MBA:390 xref: MESH:D013495 xref: neuronames:385 {source="BIRNLEX:1411"} xref: SCTID:369130007 xref: UMLS:C0038869 {source="BIRNLEX:1411"} xref: Wikipedia:Supraoptic_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001930 {source="ABA"} ! paraventricular nucleus of hypothalamus relationship: mutually_spatially_disjoint_with UBERON:0001932 {source="ABA"} ! arcuate nucleus of hypothalamus relationship: part_of UBERON:0002271 {source="ABA", source="MA"} ! periventricular zone of hypothalamus relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg" xsd:anyURI [Term] id: UBERON:0001930 name: paraventricular nucleus of hypothalamus def: "Nucleus in the anterior part of the hypothalamus. (MSH) * one of the magnocellular hypothalamic nuclei, an elongated plate of large, deeply staining cells located close to the third ventricle in the anterior hypothalamic area; major source of oxytocin and to a lesser extent, of antidiuretic hormone, neurohormones, which are carried to the neurohypophysis along the paraventriculohypophysial tract. (CSP)." [BIRNLEX:1407] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "filiform nucleus" EXACT [] synonym: "nuclei paraventriculares" RELATED OMO:0003011 [NeuroNames:387] synonym: "nuclei paraventricularis hypothalami" RELATED OMO:0003011 [Wikipedia:Paraventricular_nucleus_of_hypothalamus] synonym: "nucleus filiformis" RELATED OMO:0003011 [NeuroNames:387] synonym: "nucleus hypothalami filiformis" RELATED OMO:0003011 [NeuroNames:387] synonym: "nucleus hypothalami paraventricularis" RELATED OMO:0003011 [NeuroNames:387] synonym: "nucleus paraventricularis hypothalami" RELATED [BTO:0002476] synonym: "Pa" BROAD OMO:0003000 [BIRNLEX:1407, NIFSTD:NeuroNames_abbrevSource] synonym: "paraventricular hypothalamic nucleus" EXACT [] synonym: "paraventricular nucleus" EXACT [] synonym: "paraventricular nucleus hypothalamus (Malone)" RELATED [NeuroNames:387] synonym: "paraventricular nucleus of the hypothalamus" RELATED [NeuroNames:387] synonym: "parvocellular hypothalamic nucleus" RELATED [BAMS:PVH] synonym: "subcommissural nucleus (Ziehen)" RELATED [NeuroNames:387] xref: BAMS:Pa xref: BAMS:PAH xref: BAMS:PVH xref: BIRNLEX:1407 xref: BM:Die-Hy-PAH xref: BTO:0002476 xref: DHBA:10476 xref: EFO:0002469 xref: EMAPA:35665 xref: EV:0100229 xref: FMA:62320 xref: GAID:643 xref: HBA:12905 xref: MA:0000848 xref: MBA:38 xref: MESH:D010286 xref: neuronames:387 {source="BIRNLEX:1407"} xref: SCTID:369131006 xref: UMLS:C0030532 {source="BIRNLEX:1407"} xref: Wikipedia:Paraventricular_nucleus_of_hypothalamus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001929 {source="ABA"} ! supraoptic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001932 {source="ABA"} ! arcuate nucleus of hypothalamus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ef/PVNss.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg" xsd:anyURI [Term] id: UBERON:0001931 name: lateral preoptic nucleus def: "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]." [Wikipedia:Preoptic_area#Lateral_preoptic_nucleus] subset: uberon_slim synonym: "area praeoptica lateralis" RELATED OMO:0003011 [NeuroNames:381] synonym: "area preoptica lateralis" RELATED OMO:0003011 [NeuroNames:381] synonym: "lateral preoptic area" EXACT [] synonym: "lateral preoptic hypothalamic nucleus" EXACT [] synonym: "LPO" BROAD OMO:0003000 [BIRNLEX:1722, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus praeopticus lateralis" RELATED OMO:0003011 [NeuroNames:381] synonym: "nucleus preopticus lateralis" RELATED OMO:0003011 [NeuroNames:381] xref: BAMS:LPO xref: BIRNLEX:1722 xref: BM:Die-Hy-LPO xref: BTO:0006166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10471 xref: EMAPA:35483 xref: FMA:62326 xref: HBA:4552 xref: MA:0000835 xref: MBA:226 xref: neuronames:381 {source="BIRNLEX:1722"} xref: SCTID:369129002 xref: UMLS:C0175312 {source="BIRNLEX:1722"} xref: UMLS:C1289556 {source="BIRNLEX:1722"} xref: Wikipedia:Preoptic_area#Lateral_preoptic_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001907 {source="ABA"} ! zona incerta relationship: mutually_spatially_disjoint_with UBERON:0001933 {source="ABA"} ! retrochiasmatic area relationship: mutually_spatially_disjoint_with UBERON:0002430 {source="ABA"} ! lateral hypothalamic area relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI [Term] id: UBERON:0001932 name: arcuate nucleus of hypothalamus def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus] subset: uberon_slim synonym: "ArcH" BROAD OMO:0003000 [BIRNLEX:1638, NIFSTD:NeuroNames_abbrevSource] synonym: "arcuate hypothalamic nucleus" EXACT [] synonym: "arcuate nucleus" EXACT [] synonym: "arcuate nucleus of the hypothalamus" RELATED [NeuroNames:395] synonym: "arcuate nucleus-2" EXACT [] synonym: "arcuate periventricular nucleus" EXACT [] synonym: "infundibular hypothalamic nucleus" EXACT [] synonym: "infundibular nucleus" EXACT [] synonym: "infundibular periventricular nucleus" EXACT [] synonym: "nucleus arcuatus" EXACT OMO:0003011 [FMA:62329, FMA:TA] synonym: "nucleus arcuatus (hypothalamus)" RELATED OMO:0003011 [NeuroNames:395] synonym: "nucleus arcuatus hypothalami" RELATED OMO:0003011 [Wikipedia:Arcuate_nucleus] synonym: "nucleus infundibularis" RELATED [BTO:0002473] synonym: "nucleus infundibularis hypothalami" RELATED OMO:0003011 [NeuroNames:395] synonym: "nucleus semilunaris" RELATED [BTO:0002473] xref: BAMS:Arc xref: BAMS:ArcH xref: BAMS:ARH xref: BIRNLEX:1638 xref: BM:HAr xref: BTO:0002473 xref: BTO:0005534 xref: DHBA:10492 xref: EMAPA:35142 xref: EV:0100230 xref: FMA:62329 xref: GAID:647 xref: HBA:12913 xref: MA:0000847 xref: MBA:223 xref: MESH:D001111 xref: NCIT:C52711 xref: neuronames:395 {source="BIRNLEX:1638"} xref: UMLS:C0003741 {source="BIRNLEX:1638", source="ncithesaurus:Arcuate_Nucleus"} xref: Wikipedia:Arcuate_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001929 {source="ABA"} ! supraoptic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001930 {source="ABA"} ! paraventricular nucleus of hypothalamus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalamic region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: external_ontology_notes "the semantics of the BTO class arcuate nucleus are not clear" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0001933 name: retrochiasmatic area synonym: "area retrochiasmatica" RELATED OMO:0003011 [NeuroNames:396] synonym: "nucleus supraopticus diffusus" RELATED OMO:0003011 [NeuroNames:396] synonym: "RCh" BROAD OMO:0003000 [BIRNLEX:1569, NIFSTD:NeuroNames_abbrevSource] synonym: "retrochiasmatic area" RELATED [NeuroNames:396] synonym: "retrochiasmatic hypothalamic area" RELATED [NeuroNames:396] synonym: "retrochiasmatic region" EXACT [] synonym: "supraoptic nucleus, tuberal part" RELATED [NeuroNames:396] xref: BAMS:RCH xref: BAMS:RCh xref: BIRNLEX:1569 xref: EMAPA:37732 {source="MA:th"} xref: FMA:62330 xref: MA:0000841 xref: MBA:173 xref: neuronames:396 {source="BIRNLEX:1569"} xref: UMLS:C0262326 {source="BIRNLEX:1569"} is_a: UBERON:0000064 ! organ part relationship: mutually_spatially_disjoint_with UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001907 {source="ABA"} ! zona incerta relationship: mutually_spatially_disjoint_with UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: mutually_spatially_disjoint_with UBERON:0002430 {source="ABA"} ! lateral hypothalamic area relationship: part_of UBERON:0002272 ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA", source="NIFSTD"} ! intermediate hypothalamic region [Term] id: UBERON:0001934 name: dorsomedial nucleus of hypothalamus def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus] subset: uberon_slim synonym: "DMH" BROAD OMO:0003000 [BIRNLEX:1558, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsomedial hypothalamic nucleus" EXACT [] synonym: "dorsomedial nucleus" BROAD [] synonym: "dorsomedial nucleus hypothalamus" RELATED [NeuroNames:397] synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT [] synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT [] synonym: "dorsomedial nucleus of the hypothalamus" RELATED [NeuroNames:397] synonym: "nucleus dorsomedialis hypothalami" RELATED OMO:0003011 [NeuroNames:397] synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED OMO:0003011 [BTO:0002474, Wikipedia:Dorsomedial_hypothalamic_nucleus] synonym: "nucleus hypothalamicus dorsomedialis" RELATED OMO:0003011 [NeuroNames:397] xref: BAMS:DM xref: BAMS:DMH xref: BIRNLEX:1558 xref: BM:Die-Hy-DMH xref: BTO:0002474 xref: DHBA:10485 xref: EMAPA:35297 xref: EV:0100232 xref: FMA:62331 xref: GAID:648 xref: HBA:12914 xref: MA:0000838 xref: MBA:830 xref: MESH:D004302 xref: neuronames:397 {source="BIRNLEX:1558"} xref: SCTID:369134003 xref: UMLS:C0013055 {source="BIRNLEX:1558"} xref: Wikipedia:Dorsomedial_hypothalamic_nucleus is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: mutually_spatially_disjoint_with UBERON:0002219 {source="ABA"} ! subfornical organ relationship: mutually_spatially_disjoint_with UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: mutually_spatially_disjoint_with UBERON:0002689 {source="ABA"} ! supraoptic crest relationship: mutually_spatially_disjoint_with UBERON:0002690 {source="ABA"} ! anteroventral periventricular nucleus relationship: mutually_spatially_disjoint_with UBERON:0007626 {source="ABA"} ! subparaventricular zone relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI [Term] id: UBERON:0001935 name: ventromedial nucleus of hypothalamus def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Ventromedial_hypothalamic_nucleus] comment: part of tuberal area in MA subset: uberon_slim synonym: "nucleus hypothalamicus ventromedialis" RELATED OMO:0003011 [NeuroNames:398] synonym: "nucleus ventromedialis hypothalami" RELATED [BTO:0002472] synonym: "tuberal nucleus (Ganser)" RELATED [NeuroNames:398] synonym: "ventrolateral hypothalamic nucleus" RELATED [BTO:0002472] synonym: "ventrolateral nucleus of hypothalamus" RELATED [BTO:0002472] synonym: "ventromedial hypothalamic nucleus" EXACT [] synonym: "ventromedial nucleus hypothalamus" RELATED [NeuroNames:398] synonym: "ventromedial nucleus of hypothalamus." RELATED [BTO:0002472] synonym: "ventromedial nucleus of the hypothalamus" RELATED [NeuroNames:398] synonym: "VMH" BROAD OMO:0003000 [BIRNLEX:1572, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VMH xref: BIRNLEX:1572 xref: BM:VMH xref: BTO:0002472 xref: DHBA:10488 xref: DMBA:15675 xref: EMAPA:35916 xref: EV:0100233 xref: FMA:62332 xref: GAID:650 xref: HBA:12919 xref: MA:0000845 xref: MBA:693 xref: MESH:D014697 xref: neuronames:398 {source="BIRNLEX:1572"} xref: SCTID:369124007 xref: UMLS:C0042518 {source="BIRNLEX:1572"} xref: Wikipedia:Ventromedial_hypothalamic_nucleus is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: mutually_spatially_disjoint_with UBERON:0002206 {source="ABA"} ! mammillary body relationship: mutually_spatially_disjoint_with UBERON:0002634 {source="ABA"} ! anterior nucleus of hypothalamus relationship: mutually_spatially_disjoint_with UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI [Term] id: UBERON:0001936 name: tuberomammillary nucleus def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [Wikipedia:Tuberomammillary_nucleus] subset: uberon_slim synonym: "caudal magnocellular nucleus" EXACT [BIRNLEX:1271] synonym: "mammilloinfundibular nucleus" EXACT [FMA:62335] synonym: "mammiloinfundibular nucleus" EXACT [BIRNLEX:1271] synonym: "nucleus tuberomamillaris" RELATED OMO:0003011 [NeuroNames:427] synonym: "nucleus tuberomamillaris hypothalami" RELATED OMO:0003011 [NeuroNames:427] synonym: "TM" BROAD OMO:0003000 [BIRNLEX:1271, NIFSTD:NeuroNames_abbrevSource] synonym: "TM" RELATED OMO:0003000 [BIRNLEX:1271] synonym: "tubero-mamillary area" RELATED [NeuroNames:427] synonym: "tuberomamillary nucleus" RELATED OMO:0003002 [EV:0100237] synonym: "tuberomammillary hypothalamic nucleus" EXACT [BIRNLEX:1271] synonym: "tuberomammillary nucleus" EXACT [BIRNLEX:1271] synonym: "tuberomammillary nucleus, ventral part" RELATED [NeuroNames:427] synonym: "ventral tuberomammillary nucleus" RELATED [NeuroNames:427] xref: BAMS:TM xref: BIRNLEX:1271 xref: DHBA:10496 xref: EMAPA:35889 xref: EV:0100237 xref: FMA:62335 xref: HBA:12912 xref: MA:0000853 xref: MBA:557 xref: neuronames:427 {source="BIRNLEX:1271"} xref: SCTID:369122006 xref: UMLS:C0228377 {source="BIRNLEX:1271"} xref: UMLS:C1289549 {source="BIRNLEX:1271"} xref: Wikipedia:Tuberomammillary_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001938 {source="ABA"} ! lateral mammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001939 {source="ABA"} ! medial mammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001940 {source="ABA"} ! supramammillary nucleus relationship: part_of UBERON:0002206 {source="MA"} ! mammillary body relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area [Term] id: UBERON:0001937 name: lateral hypothalamic nucleus def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating." [Wikipedia:Lateral_hypothalamus] subset: uberon_slim subset: vertebrate_core synonym: "areas of Economo" RELATED [NeuroNames:1347] synonym: "economo's areas" RELATED [NeuroNames:1347] synonym: "lateral hypothalamic nuclei" RELATED OMO:0003004 [ZFA:0000227] synonym: "LHy" BROAD OMO:0003000 [BIRNLEX:1199, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus hypothalamicus lateralis" EXACT OMO:0003011 [FMA:62337, FMA:TA] xref: BAMS:LHy xref: BIRNLEX:1199 xref: EV:0100234 xref: FMA:62337 xref: neuronames:1347 {source="BIRNLEX:1199"} xref: SCTID:360452004 xref: TAO:0000227 xref: UMLS:C0086527 {source="BIRNLEX:1199"} xref: Wikipedia:Lateral_hypothalamus xref: ZFA:0000227 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI [Term] id: UBERON:0001938 name: lateral mammillary nucleus synonym: "lateral mamillary nucleus" RELATED [NeuroNames:413] synonym: "lateral mammillary hypothalamic nucleus" EXACT [] synonym: "lateral mammillary nucleus (Gudden)" RELATED [NeuroNames:413] synonym: "lateral nucleus of mammillary body" EXACT [] synonym: "LM" BROAD OMO:0003000 [BIRNLEX:1460, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis mamillaris lateralis" RELATED OMO:0003011 [NeuroNames:413] synonym: "nucleus intercalatus (Olszewski)" RELATED OMO:0003011 [NeuroNames:413] synonym: "nucleus lateralis corpus mamillaris" RELATED OMO:0003011 [NeuroNames:413] synonym: "nucleus mammillaris lateralis" EXACT OMO:0003011 [FMA:62341, FMA:TA] xref: BAMS:LM xref: BIRNLEX:1460 xref: BTO:0004009 xref: DHBA:10502 xref: DMBA:15734 xref: EMAPA:35481 xref: EV:0100239 xref: FMA:62341 xref: HBA:4675 xref: MA:0000850 xref: MBA:210 xref: neuronames:413 {source="BIRNLEX:1460"} xref: SCTID:369143007 xref: UMLS:C0152357 {source="BIRNLEX:1460"} xref: UMLS:C1289570 {source="BIRNLEX:1460"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001939 {source="ABA"} ! medial mammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001940 {source="ABA"} ! supramammillary nucleus relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001939 name: medial mammillary nucleus synonym: "internal mammillary nucleus" EXACT [] synonym: "medial mamillary nucleus" RELATED [BAMS:MM] synonym: "medial mammillary nucleus, body" RELATED [BAMS:MM] synonym: "medial nucleus of mammillary body" EXACT [] synonym: "MM" BROAD OMO:0003000 [BIRNLEX:1299, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus mammillaris medialis" EXACT OMO:0003011 [FMA:62342, FMA:TA] synonym: "preoptic division" RELATED [NeuroNames:376] xref: BAMS:MM xref: BAMS:MMg xref: BIRNLEX:1299 xref: BTO:0004008 xref: DHBA:10499 xref: DMBA:15729 xref: EMAPA:35548 xref: EV:0100238 xref: FMA:62342 xref: HBA:4672 xref: MA:0000851 xref: MBA:491 xref: neuronames:376 {source="BIRNLEX:1299"} xref: SCTID:369141009 xref: UMLS:C0175329 {source="BIRNLEX:1299"} xref: UMLS:C1289568 {source="BIRNLEX:1299"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001938 {source="ABA"} ! lateral mammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001940 {source="ABA"} ! supramammillary nucleus relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001940 name: supramammillary nucleus synonym: "nuclei premamillaris" RELATED OMO:0003011 [NeuroNames:418] synonym: "nucleus premamillaris hypothalami" RELATED OMO:0003011 [NeuroNames:418] synonym: "premamillary nucleus" RELATED [NeuroNames:418] synonym: "SuM" BROAD OMO:0003000 [BIRNLEX:1479, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:SUM xref: BAMS:SuM xref: BIRNLEX:1479 xref: DHBA:10497 xref: EMAPA:35842 xref: FMA:62347 xref: HBA:12911 xref: MA:0000852 xref: MBA:525 xref: neuronames:418 {source="BIRNLEX:1479"} xref: SCTID:369144001 xref: UMLS:C0228378 {source="BIRNLEX:1479"} xref: UMLS:C1289571 {source="BIRNLEX:1479"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001938 {source="ABA"} ! lateral mammillary nucleus relationship: mutually_spatially_disjoint_with UBERON:0001939 {source="ABA"} ! medial mammillary nucleus relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001941 name: lateral habenular nucleus synonym: "lateral habenula" EXACT [] synonym: "lateral habenula (Nissl)" RELATED [NeuroNames:295] synonym: "LHb" BROAD OMO:0003000 [BIRNLEX:1438, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus habenulae lateralis" EXACT [BIRNLEX:1438] synonym: "nucleus habenularis lateralis" EXACT [BIRNLEX:1438] synonym: "nucleus habenularis lateralis epithalami" EXACT [BIRNLEX:1438] xref: BAMS:HL xref: BAMS:LH xref: BAMS:LHb xref: BIRNLEX:1438 xref: BM:Die-Epi-Hl xref: BTO:0002699 xref: DHBA:10453 xref: EMAPA:35479 xref: FMA:62372 xref: HBA:4524 xref: MA:0000831 xref: MBA:186 xref: neuronames:295 {source="BIRNLEX:1438"} xref: SCTID:361538005 xref: UMLS:C0228390 {source="BIRNLEX:1438"} is_a: UBERON:0008993 ! habenular nucleus relationship: mutually_spatially_disjoint_with UBERON:0001905 {source="ABA"} ! pineal body relationship: mutually_spatially_disjoint_with UBERON:0001942 {source="ABA"} ! medial habenular nucleus [Term] id: UBERON:0001942 name: medial habenular nucleus def: "The habenular nuclei comprise a small group of nuclei that are part of the epithalamus of the diencephalon, situated at the posterior end of the thalamus, on its upper surface. The habenular nuclei are typically divided into: lateral habenular nucleus medial habenular nucleus The pineal gland is attached to the brain in this region. Nerve impulses from the habenular nuclei are transmitted to the septal nuclei via the stria medullaris, which is found on the medial surface of the thalamus." [Wikipedia:Habenular_nuclei] synonym: "ganglion intercrurale" RELATED OMO:0003011 [NeuroNames:294] synonym: "ganglion interpedunculare" RELATED OMO:0003011 [NeuroNames:294] synonym: "medial habenula" EXACT [] synonym: "MHb" BROAD OMO:0003000 [BIRNLEX:1431, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei habenulares" RELATED OMO:0003011 [NeuroNames:294] synonym: "nucleus habenulae medialis" EXACT [BIRNLEX:1431] synonym: "nucleus habenularis" RELATED OMO:0003011 [NeuroNames:294] synonym: "nucleus habenularis medialis" EXACT [BIRNLEX:1431] synonym: "nucleus habenularis medialis (Hassler)" EXACT [BIRNLEX:1431] synonym: "nucleus habenularis medialis epithalami" EXACT [BIRNLEX:1431] xref: BAMS:HM xref: BAMS:MH xref: BAMS:MHb xref: BIRNLEX:1431 xref: BM:Die-Epi-HM xref: BTO:0003686 xref: DHBA:10456 xref: DMBA:16388 xref: EMAPA:35547 xref: FMA:62373 xref: HBA:4523 xref: MA:0000832 xref: MBA:483 xref: neuronames:294 {source="BIRNLEX:1431"} xref: UMLS:C0228389 {source="BIRNLEX:1431"} xref: Wikipedia:Habenular_nuclei is_a: UBERON:0008993 ! habenular nucleus relationship: mutually_spatially_disjoint_with UBERON:0001905 {source="ABA"} ! pineal body relationship: mutually_spatially_disjoint_with UBERON:0001941 {source="ABA"} ! lateral habenular nucleus [Term] id: UBERON:0001943 name: midbrain tegmentum def: "Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]." [FMA:FMA, ISBN:0471888893, Wikipedia:Midbrain_tegmentum] comment: 'tegmentum' is used generically for the ventral part of the brainstem (ISBN:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "mesencephalic tegmentum" RELATED [VHOG:0001367] synonym: "MTg" BROAD OMO:0003000 [BIRNLEX:1200, NIFSTD:NeuroNames_abbrevSource] synonym: "tegmentum" BROAD [ISBN:0471888893] synonym: "tegmentum mesencephali" EXACT OMO:0003011 [Wikipedia:Midbrain_tegmentum] synonym: "tegmentum mesencephalicum" RELATED OMO:0003011 [NeuroNames:491] synonym: "tegmentum of midbrain" EXACT [] xref: BAMS:MTg xref: BIRNLEX:1200 xref: BTO:0003388 xref: DHBA:12195 xref: EFO:0000921 xref: EHDAA2:0004475 xref: EMAPA:18215 xref: FMA:62393 xref: HBA:9002 xref: MA:0000212 xref: MAT:0000452 xref: MESH:D013681 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:491 {source="BIRNLEX:1200"} xref: SCTID:362392007 xref: TAO:0000160 xref: UMLS:C0039441 {source="BIRNLEX:1200"} xref: VHOG:0001367 xref: Wikipedia:Midbrain_tegmentum xref: XAO:0004271 xref: ZFA:0000160 is_a: UBERON:0002616 ! regional part of brain relationship: develops_from UBERON:0010285 {source="ZFA"} ! midbrain basal plate relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0002298 ! brainstem relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png" xsd:anyURI property_value: homology_notes "Together, our results reveal a shared basic organization in the tegmental domains of the diencephalon and midbrain of developing lamprey, indicating early appearance of the domain in vertebrate phylogeny.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001367", ontology="VHOG", source="DOI:10.1016/j.brainresbull.2005.05.001 Villar-Cheda B, Abalo XM, Anadon R, Rodicio MC, The tegmental proliferation region in the sea lamprey. Brain Research Bulletin (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001944 name: pretectal region def: "Nuclear complex between dorsal thalamus and optic tectum whose nuclei receive afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "area praetectalis" RELATED OMO:0003011 [NeuroNames:467] synonym: "area pretectalis" EXACT OMO:0003011 [FMA:62402, FMA:TA] synonym: "nuclei pretectales" EXACT OMO:0003011 [FMA:62402, FMA:TA] synonym: "nucleus praetectalis" RELATED OMO:0003011 [NeuroNames:467] synonym: "praetectum" RELATED OMO:0003011 [NeuroNames:467] synonym: "pretectal area" EXACT [] synonym: "pretectal nuclei" EXACT [] synonym: "pretectum" EXACT [] synonym: "regio pretectalis" RELATED OMO:0003011 [NeuroNames:467] xref: BAMS:PRT xref: BAMS:PTc xref: BAMS:PTec xref: BIRNLEX:703 xref: BM:MB-Tec-PT xref: DHBA:12181 xref: DMBA:16510 xref: EMAPA:32778 xref: FMA:62402 xref: HBA:9079 xref: MA:0001062 xref: MBA:1100 xref: MESH:D066250 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:467 {source="BIRNLEX:703"} xref: NLX:59721 xref: SCTID:416333003 xref: TAO:0000418 xref: UMLS:C0175354 {source="BIRNLEX:703"} xref: Wikipedia:Pretectal_area xref: Wikipedia:Pretectum xref: XAO:0004303 xref: ZFA:0000418 is_a: UBERON:0003528 ! brain gray matter is_a: UBERON:0007245 {source="cjm"} ! nuclear complex of neuraxis relationship: mutually_spatially_disjoint_with UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: mutually_spatially_disjoint_with UBERON:0001947 {source="ABA"} ! red nucleus relationship: mutually_spatially_disjoint_with UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: mutually_spatially_disjoint_with UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: mutually_spatially_disjoint_with UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: mutually_spatially_disjoint_with UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: mutually_spatially_disjoint_with UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: mutually_spatially_disjoint_with UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: mutually_spatially_disjoint_with UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: mutually_spatially_disjoint_with UBERON:0003040 {source="ABA"} ! central gray substance of midbrain relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "A narrow, transversely oriented rostral zone of the mesencephalic tectum, bounded caudally by the superior colliculus, rostrally by the habenular trigone, and laterally by the pulvinar thalami; the pretectal area contains several nuclei that receive fibers from the optic tract; it has bilateral efferent connections with the Edinger-Westphal nucleus of the oculomotor nuclear complex by way of which it mediates the pupillary light refle[MP:0009637]x" xsd:string {source="MP:0009637"} property_value: external_definition "Region of brain lying between the midbrain tectum and the thalamus (Sefton and Dreher, in Paxinos, G The rat central nervous system, 1995, pg 859), Situated at the level of poterior commissure and just rostral to the superior colliculus (Brodal, Neurological Anatomy, 3rd ed, 1981, pg 542)" xsd:string {source="NLX:59721"} property_value: external_ontology_notes "part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP)" xsd:string {external_ontology="ZFA"} property_value: function_notes "It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex" xsd:string property_value: taxon_notes "in monotremes, undifferentiated and possesses only a single nucleus[ISBN:0471888893]" xsd:string property_value: taxon_notes "teleost fishes exhibit hypertrophy of the pretectum[ISBN:0471888893]" xsd:string property_value: taxon_notes "within the amniotes, this region is smaller in mammals[ISBN:0471888893]" xsd:string [Term] id: UBERON:0001945 name: superior colliculus def: "Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM)." [BIRNLEX:1040] comment: ). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior colliculus" EXACT [] synonym: "anterior corpus quadrigeminum" EXACT [] synonym: "colliculus bigeminalis oralis" RELATED OMO:0003011 [NeuroNames:473] synonym: "colliculus cranialis" RELATED OMO:0003011 [NeuroNames:473] synonym: "colliculus rostralis" RELATED OMO:0003011 [NeuroNames:473] synonym: "colliculus superior" RELATED OMO:0003011 [NeuroNames:473] synonym: "corpora bigemina" RELATED [] synonym: "corpus quadrigeminum superius" RELATED OMO:0003011 [NeuroNames:473] synonym: "cranial colliculus" EXACT [] synonym: "dorsal midbrain" RELATED [] synonym: "layers of the superior colliculus" RELATED [NeuroNames:473] synonym: "lobus opticus" RELATED [BTO:0000965] synonym: "nates" RELATED OMO:0003011 [NeuroNames:473] synonym: "optic lobe" RELATED [] synonym: "optic tectum" EXACT SENSU [NCBITaxon:32443, NCBITaxon:7777, Wikipedia:Superior_colliculus, ZFA:0000445] synonym: "optic tectum" RELATED [] synonym: "strata (grisea et alba) colliculi cranialis" RELATED OMO:0003011 [NeuroNames:473] synonym: "strata (grisea et alba) colliculi superioris" RELATED OMO:0003011 [NeuroNames:473] synonym: "tectal lobe" RELATED [] synonym: "tectum" RELATED [] synonym: "tectum opticum" RELATED [] xref: AAO:0010609 xref: BAMS:SC xref: BIRNLEX:1040 xref: BM:MB-Tec-SC xref: BTO:0000965 xref: DHBA:12292 xref: DMBA:16678 xref: EFO:0002474 xref: EMAPA:32869 xref: EV:0100245 xref: FMA:62403 xref: GAID:576 xref: HBA:9114 xref: MA:0001068 xref: MESH:D013477 xref: neuronames:473 {source="BIRNLEX:1040"} xref: TAO:0000445 xref: UMLS:C0228405 {source="BIRNLEX:1040"} xref: Wikipedia:Superior_colliculus xref: XAO:0003226 xref: ZFA:0000445 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0006794 ! visual processing part of nervous system is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010609", ontology="AAO", source="PMID:17952453"} property_value: external_definition "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000445", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]" xsd:string property_value: taxon_notes "The term SC is used when discussing mammals, and OT for other vertebrates[WP]" xsd:string [Term] id: UBERON:0001946 name: inferior colliculus def: "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM)." [BIRNLEX:806] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "caudal colliculus" EXACT [] synonym: "colliculus caudalis" RELATED OMO:0003011 [NeuroNames:476] synonym: "colliculus inferior" RELATED OMO:0003011 [Wikipedia:Inferior_colliculus] synonym: "corpus bigeminalis caudalis" RELATED OMO:0003011 [NeuroNames:476] synonym: "corpus bigeminum posterioris" RELATED OMO:0003011 [NeuroNames:476] synonym: "corpus quadrigeminum inferius" RELATED OMO:0003011 [NeuroNames:476] synonym: "inferior colliculi" EXACT OMO:0003004 [EV:0100246] synonym: "posterior colliculus" EXACT [] synonym: "posterior corpus quadrigeminum" EXACT [] xref: BAMS:IC xref: BIRNLEX:806 xref: DHBA:12305 xref: DMBA:16692 xref: EFO:0002465 xref: EMAPA:32870 xref: EV:0100246 xref: FMA:62404 xref: GAID:575 xref: HBA:9102 xref: MA:0001067 xref: MBA:4 xref: MESH:D007245 xref: neuronames:476 {source="BIRNLEX:806"} xref: UMLS:C0228411 {source="BIRNLEX:806"} xref: Wikipedia:Inferior_colliculus is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0001947 name: red nucleus def: "Large round nucleus located in the midbrain tegmentum, consisting of a magnocellular and parvicellular portion in most species studied." [BIRNLEX:1478] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus rotundus subthalamo-peduncularis" RELATED OMO:0003011 [NeuroNames:505] synonym: "nucleus ruber" EXACT OMO:0003011 [TAO:0000552] synonym: "nucleus ruber" RELATED OMO:0003011 [Wikipedia:Red_nucleus] synonym: "nucleus ruber tegmenti" RELATED OMO:0003011 [MP:MP] synonym: "nucleus ruber tegmenti (Stilling)" RELATED OMO:0003011 [NeuroNames:505] synonym: "R" BROAD OMO:0003000 [BIRNLEX:1478, NIFSTD:NeuroNames_abbrevSource] synonym: "red nucleus (Burdach)" RELATED [NeuroNames:505] xref: BAMS:R xref: BAMS:RN xref: BIRNLEX:1478 xref: BM:MB-RN xref: BTO:0006329 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12247 xref: EHDAA2:0004706 xref: EMAPA:35724 xref: EV:0100248 xref: FMA:62407 xref: GAID:586 xref: HBA:9053 xref: MA:0001063 xref: MBA:214 xref: MESH:D012012 xref: neuronames:505 {source="BIRNLEX:1478"} xref: SCTID:279287006 xref: TAO:0000552 xref: UMLS:C0034910 {source="BIRNLEX:1478"} xref: Wikipedia:Red_nucleus xref: ZFA:0000552 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: mutually_spatially_disjoint_with UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: mutually_spatially_disjoint_with UBERON:0001944 {source="ABA"} ! pretectal region relationship: mutually_spatially_disjoint_with UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: mutually_spatially_disjoint_with UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: mutually_spatially_disjoint_with UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: mutually_spatially_disjoint_with UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: mutually_spatially_disjoint_with UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: mutually_spatially_disjoint_with UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: mutually_spatially_disjoint_with UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: mutually_spatially_disjoint_with UBERON:0003040 {source="ABA"} ! central gray substance of midbrain relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: function_notes "in animals without a significant corticospinal tract, gait is mainly controlled by the red nucleus." xsd:string [Term] id: UBERON:0001948 name: regional part of spinal cord def: "A multi-tissue structure that is part of a spinal cord." [OBOL:automatic] subset: non_informative synonym: "spinal cord part" RELATED [] xref: BIRNLEX:1496 xref: NCIT:C33969 xref: SCTID:244437008 xref: UMLS:C1268166 {source="ncithesaurus:Spinal_Cord_Part"} is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0001949 name: gingival epithelium def: "A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998] subset: human_reference_atlas synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic] synonym: "epithelium of gingiva" EXACT [] synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic] synonym: "gingiva epithelium" EXACT [OBOL:automatic] xref: BTO:0004998 xref: FMA:62423 xref: MA:0001576 xref: NCIT:C49239 xref: UMLS:C1179154 {source="ncithesaurus:Gingival_Epithelium"} is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0006915 ! stratified squamous epithelium is_a: UBERON:0035037 ! jaw epithelium relationship: part_of UBERON:0001828 ! gingiva relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "In humans: 15% orthokeratinized, 75% parakeratinized, 10% non-keratinized; diurnal; decreased keratinization with age. Note that in FMA this is classified as keratinized squamous - this perhaps refers to the epithelium of the attached or free gingiva" xsd:string [Term] id: UBERON:0001950 name: neocortex def: "An area of cerebral cortex defined on the basis of cytoarchitecture that have six layers. Starting from the cortical surface the layers are: molecular layer (I), external granular layer (II), external pyramidal layer (III), internal granular layer (IV), internal pyramidal layer (V), and multiform layer (VI). Neocortex is most prominent in the frontal lobe, the parietal lobe, the temporal lobe and the occipital lobe, less so in the cingulate gyrus, the parahippocampal gyrus and the insula. It is composed of two subdivisions: true isocortex and proisocortex (Carpenter-83)(NN)." [BIRNLEX:2547, OldNeuroNames:754] subset: pheno_slim subset: uberon_slim synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN:0471888893] synonym: "homotypical cortex" EXACT [BIRNLEX:2547] synonym: "iso-cortex" RELATED [BAMS:iso-cortex] synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neocortex (isocortex)" EXACT [DHBA:10160] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] synonym: "nonolfactory cortex" RELATED [BTO:0000920] synonym: "nucleus hypoglossalis" RELATED OMO:0003011 [NeuroNames:757] xref: BAMS:ISO xref: BAMS:Iso-cortex xref: BAMS:NCX xref: BIRNLEX:2547 xref: BTO:0000920 xref: DHBA:10160 xref: EHDAA2:0004662 xref: EMAPA:32842 xref: EMAPA:35589 xref: FMA:62429 xref: GAID:677 xref: MA:0002754 xref: MBA:315 xref: MESH:D019579 xref: neuronames:757 {source="BIRNLEX:2547"} xref: PBA:294021746 xref: UMLS:C0175173 {source="BIRNLEX:2547"} xref: Wikipedia:Neocortex is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0002264 {source="ABA"} ! olfactory bulb relationship: part_of UBERON:0000956 ! cerebral cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg" xsd:anyURI property_value: homology_notes "The 6-layer neocortex is well conserved in all extant mammals, but not present in birds or reptils" xsd:string {source="PMID:23027930"} [Term] id: UBERON:0001951 name: epithelium of nasopharynx alt_id: UBERON:0003237 def: "An epithelium that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic] synonym: "nasopharyngeal epithelium" RELATED [BTO:0004480] synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasopharynx epithelium" EXACT [] synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic] xref: BTO:0004480 xref: CALOHA:TS-0662 xref: EHDAA2:0001241 xref: EHDAA:7090 xref: EMAPA:17672 xref: FMA:62452 xref: MA:0001865 xref: NCIT:C49263 xref: UMLS:C1179157 {source="ncithesaurus:Nasopharynx_Epithelium"} xref: VHOG:0001038 is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0004814 ! upper respiratory tract epithelium relationship: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium [Term] id: UBERON:0001952 name: epithelium of oropharynx def: "An epithelium that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] synonym: "oropharyngeal epithelium" EXACT [] synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "oropharynx epithelium" EXACT [MA:0001605] xref: EHDAA2:0004083 xref: EMAPA:37705 {source="MA:th"} xref: FMA:62453 xref: MA:0001605 xref: NCIT:C49264 xref: UMLS:C1179158 {source="ncithesaurus:Oropharynx_Epithelium"} is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium relationship: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium property_value: external_ontology_notes "Composition varies with species and time. This is classified as nonkeratinizing stratified squamous in FMA, unilaminar in EHDAA2; the majority of the pharyngeal epithelium is unilaminar in zebrafish" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001953 name: presubiculum def: "A modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus." [http://medical-dictionary.thefreedictionary.com/presubiculum] synonym: "area 27 of Brodmann" RELATED INCONSISTENT [FMA:62486] synonym: "praesubiculum" RELATED OMO:0003011 [NeuroNames:167] synonym: "presubicular cortex (presubiculum)" EXACT [DHBA:10315] synonym: "presubiculum (Cajal)" EXACT [BIRNLEX:1108] xref: BAMS:PRE xref: BAMS:PRS xref: BAMS:PrS xref: BIRNLEX:1108 xref: BM:Tel-Cx-PSB xref: DHBA:10315 xref: DMBA:16172 xref: EMAPA:35703 xref: FMA:62486 xref: HBA:4252 xref: MA:0000923 xref: MBA:1084 xref: neuronames:167 {source="BIRNLEX:1108"} xref: UMLS:C0175194 {source="BIRNLEX:1108"} is_a: UBERON:0000064 ! organ part relationship: mutually_spatially_disjoint_with UBERON:0002191 {source="ABA"} ! subiculum relationship: mutually_spatially_disjoint_with UBERON:0002728 {source="ABA"} ! entorhinal cortex relationship: mutually_spatially_disjoint_with UBERON:0004683 {source="ABA"} ! parasubiculum relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png" xsd:anyURI property_value: editor_note "consider merging with BA27" xsd:string [Term] id: UBERON:0001954 name: Ammon's horn alt_id: UBERON:0003940 alt_id: UBERON:0004165 def: "A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum." [BIRNLEX:721] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "ammon gyrus" EXACT [GO:0021541] synonym: "ammon horn" EXACT [BIRNLEX:721] synonym: "Ammon horn fields" RELATED [BAMS:CA] synonym: "Ammon's horn" EXACT [GO:0021541] synonym: "Ammons horn" RELATED [BTO:0003705] synonym: "cornu ammonis" RELATED [GO:0021541] synonym: "hippocampus" RELATED [MA:0000191] synonym: "hippocampus major" EXACT [] synonym: "hippocampus proper" EXACT [BIRNLEX:721] synonym: "hippocampus proprius" EXACT OMO:0003011 [FMA:62493, FMA:TA] xref: BAMS:CA xref: BIRNLEX:721 xref: BM:Tel-CAM xref: BTO:0003705 xref: CALOHA:TS-0460 xref: DHBA:10296 xref: DMBA:16124 xref: EFO:0000530 xref: EHDAA2:0004443 xref: EMAPA:32845 xref: EV:0100180 xref: FMA:62493 xref: GAID:623 xref: http://scalablebrainatlas.incf.org/services/thumbnail.php?template=ABA07&size=L&dim=2d3d&format=png®ion=CA xref: MA:0000191 xref: MAT:0000114 xref: MBA:375 xref: MESH:D006624 xref: MIAA:0000114 xref: NCIT:C12444 xref: NCIT:C32374 xref: neuronames:3157 xref: PBA:128012244 xref: SCTID:361561007 xref: UMLS:C0019564 {source="BIRNLEX:721", source="ncithesaurus:Hippocampus"} xref: VHOG:0001177 xref: Wikipedia:Hippocampus is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0001885 {source="ABA"} ! dentate gyrus of hippocampal formation relationship: mutually_spatially_disjoint_with UBERON:0002601 {source="ABA"} ! fasciolar gyrus relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray739-emphasizing-hippocampus.png" xsd:anyURI property_value: external_ontology_notes "Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish. The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the 'avian hippocampus'. The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa. One of the consequences of this is that the medial pallium ('hippocampal' zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming 'cognitive maps' of the areas they inhabit.[WP]" xsd:string property_value: has_relational_adjective "hippocampal" xsd:string [Term] id: UBERON:0001955 name: epithelium of respiratory bronchiole def: "An epithelium that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "epithelial tissue of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelium" EXACT [] xref: EMAPA:35730 xref: FMA:62498 xref: MA:0001773 xref: NCIT:C48943 xref: UMLS:C1179179 {source="ncithesaurus:Respiratory_Bronchiole_Epithelium"} is_a: UBERON:0002051 ! epithelium of bronchiole relationship: part_of UBERON:0002188 ! respiratory bronchiole relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001956 name: cartilage of bronchus def: "The hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [MP:0010988] subset: human_reference_atlas subset: pheno_slim synonym: "bronchi cartilage" EXACT [OBOL:automatic] synonym: "bronchial cartilage" EXACT [] synonym: "bronchial cartilage ring" EXACT [MP:0010988] synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic] synonym: "bronchus cartilage" EXACT [] synonym: "cartilage of bronchi" EXACT [OBOL:automatic] synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic] synonym: "cartilagines bronchiales" EXACT OMO:0003004 [] xref: EMAPA:35192 xref: FMA:62649 xref: MA:0001835 xref: NCIT:C49209 xref: SCTID:278980009 xref: UMLS:C0225604 {source="ncithesaurus:Bronchus_Cartilage"} is_a: UBERON:0003603 ! lower respiratory tract cartilage relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002185 ! bronchus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001957 name: submucosa of bronchus def: "A submucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi submucosa" EXACT [OBOL:automatic] synonym: "bronchial submucosa" EXACT [] synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic] synonym: "bronchus submucosa" EXACT [] synonym: "submucosa of bronchi" EXACT [OBOL:automatic] synonym: "submucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "submucous layer of bronchi" RELATED [BTO:0002108] synonym: "tela submucosa bronchi" EXACT OMO:0003011 [FMA:62653, FMA:TA] xref: BTO:0002108 xref: EMAPA:37449 {source="MA:th"} xref: FMA:62653 xref: MA:0001837 xref: NCIT:C49214 xref: SCTID:85546005 xref: UMLS:C0225601 {source="ncithesaurus:Bronchus_Submucosa"} is_a: UBERON:0004777 ! respiratory system submucosa relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001958 name: terminal bronchiole epithelium def: "An epithelium that lines a terminal bronchiole." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "epithelial tissue of terminal bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "epithelium of terminal bronchiole" EXACT [FMA:62794] synonym: "terminal bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "terminal bronchiole epithelium" EXACT [] xref: EMAPA:36283 xref: FMA:62794 xref: MA:0001774 xref: NCIT:C33755 xref: UMLS:C1179400 {source="ncithesaurus:Terminal_Bronchiole_Epithelium"} is_a: UBERON:0002051 ! epithelium of bronchiole relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002187 ! terminal bronchiole relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string [Term] id: UBERON:0001959 name: white pulp of spleen def: "The parenchymatous tissue of the spleen that surrounds splenic blood vessels, consists of compact masses of lymphatic cells and is where foreign material removed from the blood is used to initiate an immune reaction that results in the production of antibodies." [MGI:csmith, MP:0002357] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "noduli lymphoidei splenici" RELATED OMO:0003011 [Wikipedia:White_pulp] synonym: "pulpa alba" EXACT OMO:0003011 [FMA:62805, FMA:TA] synonym: "spleen white pulp" EXACT [] synonym: "splenic white pulp" EXACT [] synonym: "white pulp" EXACT [] xref: CALOHA:TS-1264 xref: EMAPA:35809 xref: FMA:62805 xref: MA:0000762 xref: NCIT:C12993 xref: UMLS:C0229686 {source="ncithesaurus:Splenic_White_Pulp"} xref: Wikipedia:White_pulp is_a: UBERON:1000023 ! spleen pulp relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png" xsd:anyURI property_value: function_notes "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located. [Wikipedia:White_pulp]" xsd:string [Term] id: UBERON:0001960 name: periarterial lymphatic sheath def: "The area of the spleen in which T cells surround the central arteriole." [MP:0002358] subset: human_reference_atlas subset: pheno_slim synonym: "PALS" EXACT OMO:0003000 [MP:0002358] synonym: "periarterial lymphoid sheath" EXACT [] synonym: "periarteriolar sheath" EXACT [MP:0002358] synonym: "spleen periarteriolar lymphatic sheath" EXACT [] synonym: "splenic periarteriolar lymphoid sheath" RELATED [MP:0002358] synonym: "T cell domain of the splenic white pulp" EXACT [MP:0002358] xref: EMAPA:37750 {source="MA:th"} xref: FMA:62810 xref: MA:0000765 is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0010393 ! T cell domain relationship: part_of UBERON:0001959 ! white pulp of spleen relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "FMA distinguishes periarterial (PALS) from periarteriolar (FMA:62806)" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001961 name: mucosa-associated lymphoid tissue def: "Diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "epithelio-lymphoid tissue" EXACT [FMA:62819] synonym: "MALT" EXACT [] synonym: "mucosa associated lymphatic tissue" EXACT [] synonym: "mucosa associated lymphoid tissue" EXACT [] synonym: "mucosa-associated lymphoid tissue" EXACT [GO:0048537] synonym: "mucosal-associated lymphatic tissue" EXACT [GO:0048537] synonym: "mucosal-associated lymphoid tissue" EXACT [GO:0048537] xref: FMA:62819 xref: MA:0000140 xref: NCIT:C12910 xref: UMLS:C0599921 {source="ncithesaurus:Mucosa-Associated_Lymphoid_Tissue"} xref: Wikipedia:Mucosa-associated_lymphoid_tissue is_a: UBERON:0012069 {source="FMA"} ! epithelium-associated lymphoid tissue relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "todo - add part relationships to specific layers" xsd:string [Term] id: UBERON:0001962 name: gut-associated lymphoid tissue def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "GALT" RELATED [] synonym: "gut associated lymphoid tissue" EXACT [] xref: FMA:62820 xref: MA:0000136 xref: NCIT:C12936 xref: UMLS:C0596638 {source="ncithesaurus:Gut_Associated_Lymphoid_Tissue"} xref: Wikipedia:Gut-associated_lymphoid_tissue is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue relationship: part_of UBERON:0001555 ! digestive tract relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "phylogenetic relationships to be added" xsd:string property_value: taxon_notes "guts of jawless fish contains cells with lymphocyte-like morphology (Mayer 2002)." xsd:string [Term] id: UBERON:0001963 name: bronchial-associated lymphoid tissue def: "A diffuse collection of lymphpoid cells that participate in airway immune responses." [ISBN:0123813611] comment: Lymphoid tissue associated with airways in mice has functional similarities to human BALT[ISBN:0123813611] Notes: FMA classifies this as organized, not diffuse subset: pheno_slim synonym: "BALT" RELATED [] synonym: "bronchus associated lymphoid tissue" EXACT [] xref: FMA:62821 xref: MA:0000135 xref: NCIT:C32234 xref: UMLS:C1179418 {source="ncithesaurus:Bronchus-Associated_Lymphoid_Tissue"} is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001964 name: least splanchnic nerve def: "A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia." [Wikipedia:Thoracic_splanchnic_nerves#cite_note-4] subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "least thoracic splanchnic nerve" EXACT [FMA:6283] synonym: "lowest splanchnic nerve" EXACT [FMA:6283] synonym: "nervus splanchnicus imus" EXACT OMO:0003011 [FMA:6283, FMA:TA] synonym: "ramus renalis nervus splanchnici minoris" EXACT OMO:0003011 [FMA:6283, FMA:TA] synonym: "renal branch of lesser splanchnic nerve" EXACT [FMA:6283] synonym: "renal nerve" EXACT [FMA:6283] synonym: "thoracic splanchnic nerve" RELATED [] xref: EMAPA:29691 xref: FMA:6283 xref: MA:0002635 xref: SCTID:280506004 xref: Wikipedia:Thoracic_splanchnic_nerves#cite_note-4 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: external_ontology_notes "in MA this is part of the kidney but this leads to unsatisfiability" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001965 name: substantia nigra pars compacta def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)." [BIRNLEX:990] subset: pheno_slim subset: uberon_slim synonym: "compact part of substantia nigra" EXACT [] synonym: "nucleus substantiae nigrae, pars compacta" RELATED OMO:0003011 [NeuroNames:537] synonym: "pars compacta" EXACT [] synonym: "pars compacta of substantia nigra" RELATED [NeuroNames:537] synonym: "pars compacta substantiae nigrae" EXACT OMO:0003011 [FMA:62907, FMA:TA] synonym: "SNC" BROAD OMO:0003000 [BIRNLEX:990, NIFSTD:NeuroNames_abbrevSource] synonym: "SNpc" EXACT [] synonym: "substantia nigra compact part" EXACT [BIRNLEX:990] synonym: "substantia nigra compacta" EXACT [BIRNLEX:990] synonym: "substantia nigra, compact division" RELATED [BAMS:SNC] synonym: "substantia nigra, compact part" EXACT [] synonym: "substantia nigra, pars compacta" RELATED OMO:0003011 [NeuroNames:537] xref: BAMS:SNC xref: BAMS:SNc xref: BIRNLEX:990 xref: BM:MB-SNc xref: BTO:0003749 xref: DHBA:12252 xref: EMAPA:35836 xref: FMA:62907 xref: HBA:9074 xref: MA:0001064 xref: MBA:374 xref: MESH:D065842 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C97341 xref: neuronames:537 {source="BIRNLEX:990"} xref: UMLS:C0175412 {source="BIRNLEX:990", source="ncithesaurus:Pars_Compacta"} xref: Wikipedia:Substantia_nigra_pars_compacta is_a: UBERON:0000064 ! organ part relationship: mutually_spatially_disjoint_with UBERON:0002142 {source="ABA"} ! pedunculopontine tegmental nucleus relationship: mutually_spatially_disjoint_with UBERON:0007412 {source="ABA"} ! midbrain raphe nuclei relationship: part_of UBERON:0002038 ! substantia nigra [Term] id: UBERON:0001966 name: substantia nigra pars reticulata def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)." [BIRNLEX:968] comment: the cells of pars reticulata bear a strong structural and functional resemblance to the inner segment of the globus pallidus subset: pheno_slim subset: uberon_slim synonym: "nucleus substantiae nigrae, pars compacta" RELATED OMO:0003011 [NeuroNames:537] synonym: "nucleus substantiae nigrae, pars reticularis" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "pars compacta of substantia nigra" RELATED [NeuroNames:537] synonym: "pars reticularis" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "pars reticularis substantiae nigrae" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "pars reticulata" EXACT [] synonym: "reticular part of substantia nigra" EXACT [] synonym: "SNPR" BROAD OMO:0003000 [MP:0000836] synonym: "SNR" BROAD OMO:0003000 [BIRNLEX:968, NIFSTD:NeuroNames_abbrevSource] synonym: "substantia nigra reticular part" RELATED [BAMS:SNR, BAMS:SNr] synonym: "substantia nigra, pars compacta" RELATED OMO:0003011 [NeuroNames:537] synonym: "substantia nigra, pars diffusa" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "substantia nigra, pars reticulata" RELATED [BAMS:SNR] synonym: "substantia nigra, reticular division" RELATED [BAMS:SNR] synonym: "substantia nigra, reticular part" EXACT [] xref: BAMS:SNR xref: BAMS:SNr xref: BIRNLEX:968 xref: BM:MB-SNr xref: BTO:0003750 xref: DHBA:12259 xref: EMAPA:35838 xref: FMA:62908 xref: HBA:9075 xref: MA:0001066 xref: MBA:381 xref: MESH:D065841 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:537 {source="BIRNLEX:968"} xref: UMLS:C0175413 {source="BIRNLEX:968"} xref: Wikipedia:Pars_reticulata is_a: UBERON:0000064 ! organ part relationship: mutually_spatially_disjoint_with UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: mutually_spatially_disjoint_with UBERON:0001944 {source="ABA"} ! pretectal region relationship: mutually_spatially_disjoint_with UBERON:0001947 {source="ABA"} ! red nucleus relationship: mutually_spatially_disjoint_with UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: mutually_spatially_disjoint_with UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: mutually_spatially_disjoint_with UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: mutually_spatially_disjoint_with UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: mutually_spatially_disjoint_with UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: mutually_spatially_disjoint_with UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: mutually_spatially_disjoint_with UBERON:0003040 {source="ABA"} ! central gray substance of midbrain relationship: part_of UBERON:0002038 ! substantia nigra [Term] id: UBERON:0001967 name: reticular lamina of epithelium def: "A thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [http://mw1.merriam-webster.com/medical/reticular%20lamina] comment: See https://github.com/obophenotype/uberon/issues/1436 subset: uberon_slim synonym: "fibroreticular lamina" EXACT [FMA:62924] synonym: "lamina fibroreticularis" EXACT OMO:0003011 [FMA:62924] synonym: "lamina reticularis" RELATED [GO:0008004] synonym: "reticular lamina" RELATED [FMA:62924] synonym: "reticular membrane" RELATED [] xref: FMA:62924 xref: Wikipedia:Reticular_lamina is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0005769 ! basement membrane of epithelium property_value: curator_notes "this class represents a continuous sheet of reticular lamina which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'lamina reticularis' represents a portion of substance on the scale of a single cell." xsd:string [Term] id: UBERON:0001968 name: semen def: "Organism substance that is composed of sperm cells suspended in seminal fluid." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "ejaculate" RELATED [] synonym: "sperm" RELATED [BTO:0001230] xref: BTO:0001230 xref: CALOHA:TS-0917 xref: EMAPA:31488 xref: FMA:62966 xref: GAID:1169 xref: MA:0002522 xref: MESH:D012661 xref: NCIT:C13277 xref: NCIT:C13713 xref: UMLS:C1518159 {source="ncithesaurus:Male_Genital_System_Fluid_or_Secretion"} xref: UMLS:C2756969 {source="ncithesaurus:Semen"} xref: Wikipedia:Semen is_a: UBERON:0000463 ! organism substance property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/40/Human_semen_in_petri_dish2.jpg" xsd:anyURI property_value: has_relational_adjective "seminal" xsd:string property_value: taxon_notes "Note that in this ontology, semen is defined as the sum of sperm and seminal fluid, where seminal fluid is defined in taxonomically generic way (see comments for UBERON:0006530)." xsd:string [Term] id: UBERON:0001969 name: blood plasma def: "The liquid component of blood, in which erythrocytes are suspended." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "blood plasm" EXACT [] synonym: "plasma" BROAD [MA:0002501] synonym: "portion of blood plasma" EXACT [] synonym: "portion of plasma" BROAD [FMA:62970] xref: BTO:0000131 xref: CALOHA:TS-0800 xref: EFO:0001905 xref: EMAPA:35690 xref: FMA:62970 xref: GAID:1178 xref: MA:0002501 xref: MAT:0000052 xref: MESH:D010949 xref: MIAA:0000052 xref: NCIT:C13356 xref: UMLS:C0032105 {source="ncithesaurus:Plasma"} xref: Wikipedia:Blood_plasma is_a: UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0000178 ! blood [Term] id: UBERON:0001970 name: bile def: "Vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium." [DOI:10.1002/cphy.c120027, Wikipedia:Bile] subset: pheno_slim subset: uberon_slim synonym: "fel" RELATED [BTO:0000121] synonym: "gall" RELATED [BTO:0000121] xref: BTO:0000121 xref: CALOHA:TS-1172 xref: ENVO:02000023 xref: FMA:62971 xref: GAID:1157 xref: galen:Bile xref: MA:0002513 xref: MESH:D001646 xref: NCIT:C13192 xref: UMLS:C0005388 {source="ncithesaurus:Bile"} xref: Wikipedia:Bile xref: ZFA:0005857 is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid property_value: function_notes "aids the process of digestion of lipids in the small intestine" xsd:string property_value: function_notes "bile salts function to emulsify dietary fats and facilitate their intestinal absorption" xsd:string property_value: function_notes "elimination of cholesterol" xsd:string property_value: function_notes "major excretory route for potentially harmful exogenous lipophilic substances" xsd:string property_value: function_notes "many hormones and pheromones are excreted in bile, and contribute to growth and development of the intestine in some species and provide attractants for the weaning of non-human vertebrates" xsd:string property_value: function_notes "protects the organism from enteric infections by excreting immune globulin A (IgA), inflammatory cytokines, and stimulating the innate immune system in the intestine" xsd:string property_value: taxon_notes "In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum." xsd:string [Term] id: UBERON:0001971 name: gastric juice subset: pheno_slim subset: uberon_slim synonym: "stomach secretion" EXACT [] synonym: "succus gastricus" RELATED [BTO:0000501] xref: BTO:0000501 xref: FMA:62972 xref: GAID:1160 xref: galen:GastricJuice xref: MA:0002519 xref: MESH:D005750 xref: NCIT:C32661 xref: UMLS:C0017133 {source="ncithesaurus:Gastric_Secretion"} xref: Wikipedia:Gastric_juice is_a: UBERON:0000456 ! secretion of exocrine gland [Term] id: UBERON:0001972 name: submucosa of esophagus def: "A submucosa that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] synonym: "esophageal submucosa" EXACT [] synonym: "esophagus submucosa" EXACT [] synonym: "gullet submucosa" EXACT [OBOL:automatic] synonym: "oesophagus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of esophagus" EXACT [] synonym: "submucosa of gullet" EXACT [OBOL:automatic] synonym: "submucosa of oesophagus" EXACT [OBOL:automatic] synonym: "submucous layer of esophagus" RELATED [BTO:0002109] synonym: "tela submucosa (oesophagus)" EXACT OMO:0003011 [FMA:62997, FMA:TA] synonym: "tela submucosa esophagi" EXACT OMO:0003011 [BTO:0002109] synonym: "tela submucosa oesophageae" EXACT OMO:0003011 [FMA:62997, FMA:TA] synonym: "tela submucosa oesophagi" RELATED [BTO:0002109] synonym: "tela submucosa of esophagus" EXACT [] xref: BTO:0002109 xref: EMAPA:35325 xref: FMA:62997 xref: MA:0002724 xref: SCTID:362128009 is_a: UBERON:0018257 ! submucosa of digestive tract relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001974 name: lamina propria of esophagus def: "A lamina propria that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] synonym: "esophageal lamina propria" RELATED [EMAPA:26987] synonym: "esophagus lamina propria" EXACT [] synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "esophagus lamina propria mucosae" EXACT [OBOL:automatic] synonym: "gullet lamina propria" EXACT [OBOL:automatic] synonym: "gullet lamina propria mucosa" EXACT [OBOL:automatic] synonym: "gullet lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of esophagus" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of gullet" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of oesophagus" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of esophagus" EXACT [] synonym: "lamina propria mucosae of gullet" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of oesophagus" EXACT [OBOL:automatic] synonym: "lamina propria of gullet" EXACT [OBOL:automatic] synonym: "lamina propria of oesophagus" EXACT [OBOL:automatic] synonym: "oesophagus lamina propria" RELATED [] synonym: "oesophagus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "oesophagus lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:26987 xref: FMA:63050 xref: MA:0001568 xref: NCIT:C49223 xref: UMLS:C1707949 {source="ncithesaurus:Esophageal_Lamina_Propria"} is_a: UBERON:0000030 ! lamina propria relationship: part_of UBERON:0002469 {source="FMA"} ! esophagus mucosa [Term] id: UBERON:0001975 name: serosa of esophagus def: "A serous membrane that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] synonym: "esophagus serosa" EXACT [] synonym: "esophagus serous membrane" EXACT [OBOL:automatic] synonym: "gullet serosa" EXACT [OBOL:automatic] synonym: "gullet serous membrane" EXACT [OBOL:automatic] synonym: "oesophagus serosa" RELATED [] synonym: "oesophagus serous membrane" EXACT [OBOL:automatic] synonym: "serosa of abdominal part of esophagus" EXACT [] synonym: "serosa of gullet" EXACT [OBOL:automatic] synonym: "serosa of oesophagus" EXACT [] synonym: "serous coat of oesophagus" EXACT [] synonym: "serous membrane of esophagus" EXACT [OBOL:automatic] synonym: "serous membrane of gullet" EXACT [OBOL:automatic] synonym: "serous membrane of oesophagus" EXACT [OBOL:automatic] synonym: "tunica serosa oesophageae" EXACT OMO:0003011 [FMA:63057, FMA:TA] xref: EMAPA:35322 xref: FMA:63057 xref: MA:0001571 is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001976 name: epithelium of esophagus def: "The epithelial layer that lines the luminal space of the esophagus." [ISBN:0-683-40008-8, MP:0000468] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithelial tissue of esophagus" EXACT [OBOL:automatic] synonym: "epithelial tissue of gullet" EXACT [OBOL:automatic] synonym: "epithelial tissue of oesophagus" EXACT [OBOL:automatic] synonym: "epithelium of gullet" EXACT [OBOL:automatic] synonym: "epithelium of oesophagus" EXACT [OBOL:automatic] synonym: "esophageal epithelium" EXACT [] synonym: "esophagus epithelial tissue" EXACT [OBOL:automatic] synonym: "esophagus epithelium" EXACT [] synonym: "gullet epithelial tissue" EXACT [OBOL:automatic] synonym: "gullet epithelium" EXACT [OBOL:automatic] synonym: "oesophagus epithelial tissue" EXACT [OBOL:automatic] synonym: "oesophagus epithelium" RELATED [] xref: BTO:0001578 xref: CALOHA:TS-0698 xref: EFO:0003041 xref: EHDAA2:0001287 xref: EMAPA:16835 xref: FMA:63063 xref: MA:0001565 xref: NCIT:C49221 xref: TAO:0001499 xref: UMLS:C1179544 {source="ncithesaurus:Esophageal_Epithelium"} xref: ZFA:0001499 is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium relationship: part_of UBERON:0002469 {source="FMA"} ! esophagus mucosa property_value: editor_note "TODO check epithelium types: in FMA: Nonkeratinizing stratified squamous epithelium; mouse has basal and squamous subtypes; in ZFA it is columnar" xsd:string property_value: external_definition "Simple columnar epithelium that lines the esophagus. Chen et al, 2007.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001499", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001977 name: blood serum def: "The portion of blood plasma that excludes clotting factors." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Serum_(blood)] subset: pheno_slim subset: uberon_slim synonym: "serum" EXACT [] xref: BTO:0000133 xref: BTO:0001239 xref: CALOHA:TS-0923 xref: EHDAA2:0004728 xref: EMAPA:35770 xref: FMA:63083 xref: MA:0002502 xref: MESH:D044967 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13325 xref: UMLS:C0229671 {source="ncithesaurus:Serum"} xref: Wikipedia:Serum_(blood) is_a: UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0001969 ! blood plasma [Term] id: UBERON:0001978 name: parenchyma of pancreas subset: human_reference_atlas synonym: "pancreas parenchyma" EXACT [] synonym: "pancreatic parenchyma" EXACT [] xref: EMAPA:32925 xref: FMA:63120 xref: MA:0000724 xref: SCTID:371401008 xref: VHOG:0001430 is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0001979 name: venule def: "One of the minute vessels that collect deoxygenated blood from the capillary plexuses returns it to the veins." [MESH:A07.231.432.952, MP:0004125] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "venula" RELATED OMO:0003011 [Wikipedia:Venule] xref: BTO:0002626 xref: EMAPA:35917 xref: FMA:63130 xref: MA:0000071 xref: MESH:D014699 xref: NCIT:C12818 xref: SCTID:341687009 xref: TAO:0005315 xref: UMLS:C0042520 {source="ncithesaurus:Venule"} xref: VHOG:0001765 xref: Wikipedia:Venule xref: ZFA:0005315 is_a: UBERON:0003920 ! venous blood vessel is_a: UBERON:8410081 ! blood microvessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg" xsd:anyURI property_value: external_definition "Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005315", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001980 name: arteriole def: "The smallest division of the artery located between the muscular arteries and the capillaries[GO]." [GO:0014830] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteriola" RELATED OMO:0003011 [Wikipedia:Arteriole] xref: AAO:0010253 xref: BTO:0001997 xref: EMAPA:35146 xref: FMA:63182 xref: MA:0000063 xref: MESH:D001160 xref: NCIT:C12672 xref: SCTID:337724002 xref: TAO:0002138 xref: UMLS:C0003847 {source="ncithesaurus:Arteriole"} xref: VHOG:0001763 xref: Wikipedia:Arteriole xref: ZFA:0005255 is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel is_a: UBERON:8410081 ! blood microvessel property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg" xsd:anyURI property_value: external_definition "Multi-tissue structure part of the blood vasculature, feeds into capillaries. Arterioles carry blood away from the heart.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002138", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Small, terminal branch of an artery which generally connects to capillaries.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010253", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0001981 name: blood vessel def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "region of vascular tree organ" EXACT [FMA:50722] synonym: "vas sanguineum" RELATED OMO:0003011 [Wikipedia:Blood_vessel] synonym: "vascular element" BROAD [EMAPA:35993] synonym: "vascular tree organ region" EXACT [FMA:50722] xref: AAO:0011004 xref: AEO:0000207 xref: BTO:0001102 xref: CALOHA:TS-0080 xref: EFO:0000817 xref: EHDAA2:0003252 xref: EHDAA:240 xref: EMAPA:32743 xref: EMAPA:35993 xref: FMA:50722 xref: FMA:63183 xref: GAID:169 xref: MA:0000060 xref: MAT:0000393 xref: MESH:D001808 xref: NCIT:C12679 xref: NLXANAT:090901 xref: SCTID:361097006 xref: TAO:0002137 xref: UMLS:C0005847 {source="ncithesaurus:Blood_Vessel"} xref: VHOG:0001250 xref: Wikipedia:Blood_vessel xref: XAO:0001011 xref: ZFA:0005314 is_a: UBERON:0000055 ! vessel relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm relationship: develops_from UBERON:0006965 {source="GO:0072360"} ! vascular cord relationship: part_of UBERON:0004537 ! blood vasculature relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI property_value: editor_note "consider adopting the EMAPA superclass 'vascular element', which includes microvasculature (e.g. capillaries), vascular plexus" xsd:string property_value: external_definition "Any of the vessels through which blood circulates in the body. [XAO:0001011_][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001250", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011004", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX" xsd:string {external_ontology="FMA"} property_value: homology_notes "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001250", ontology="VHOG", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)", source="http://bgee.unil.ch/"} property_value: taxon_notes "annelids have blood vessels, but this class is not applicable to annelids." xsd:string [Term] id: UBERON:0001982 name: capillary def: "Any of the smallest blood vessels connecting arterioles with venules." [https://github.com/obophenotype/uberon/issues/137, ISBN:0073040584, Wikipedia:Capillary] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "blood capillary" EXACT [] synonym: "capillary vessel" EXACT [] xref: AAO:0010252 xref: BTO:0002045 xref: CALOHA:TS-2006 xref: EFO:0001906 xref: EMAPA:35198 xref: EV:0100035 xref: FMA:63194 xref: MA:0000065 xref: MESH:D002196 xref: NCIT:C12685 xref: NLXANAT:090902 xref: TAO:0005250 xref: UMLS:C0935624 {source="ncithesaurus:Capillary"} xref: VHOG:0001253 xref: Wikipedia:Capillary xref: XAO:0000116 xref: ZFA:0005250 is_a: UBERON:8410081 ! blood microvessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary,_pancreatic_tissue_-_TEM.jpg" xsd:anyURI property_value: editor_note "not all sources agree capillary is a blood vessel - consider adopting EMAPA superclass of vascular element" xsd:string property_value: external_definition "Any of the tiny blood vessels connecting the arterioles to the venules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010252", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001253", ontology="VHOG", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2006)", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2186" xsd:string property_value: structure_notes "capillaries lack tunica media and tunica adventitia; only the endothelial wall of the tunica intima belongs" xsd:string [Term] id: UBERON:0001983 name: crypt of Lieberkuhn def: "The tubular intestinal glands found in the mucosal membranes." [https://github.com/obophenotype/uberon/issues/213, ISBN:0-683-40008-8, MP:0000490] subset: organ_slim subset: pheno_slim synonym: "crypt of Lieberkuhn" EXACT [] synonym: "crypt of Lieberkühn" EXACT [] synonym: "crypts of Lieberkühn" EXACT OMO:0003004 [] synonym: "follicles of Lieberkühn" EXACT [] synonym: "intestinal crypt" EXACT [] synonym: "intestinal crypts" EXACT OMO:0003004 [] synonym: "intestinal gland" BROAD [Wikipedia:Crypts_of_Lieberkuhn] synonym: "intestinal gland of Lieberkuhn" RELATED [FMA:63621] synonym: "Lieberkuhn crypt" EXACT [] synonym: "Lieberkuhn gland" EXACT [] synonym: "Lieberkuhn's gland" EXACT [] synonym: "Lieberkuhn's glands" EXACT OMO:0003004 [] synonym: "Lieberkühn crypt" EXACT [] xref: EMAPA:35266 xref: FMA:63621 xref: MA:0001535 xref: NCIT:C32411 xref: SCTID:118652008 xref: UMLS:C1621887 {source="ncithesaurus:Crypts_of_the_Lieberkuhn"} xref: Wikipedia:Intestinal_crypt is_a: UBERON:0000333 ! intestinal gland relationship: seeAlso UBERON:2005256 ! intervillus pockets property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg" xsd:anyURI property_value: external_definition "In histology, an intestinal crypt, also crypt of LieberkC " EXACT OMO:0003011 [FMA:TA] xref: EMAPA:31250 xref: FMA:21531 xref: NCIT:C32396 xref: SCTID:244948006 xref: UMLS:C0224377 {source="ncithesaurus:Cremaster_Muscle"} xref: Wikipedia:Cremaster_muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000079 ! male reproductive system relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "in females it is represented by only a few muscle loops that envelop the round ligament of the uterus. This class represents the male structure" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png" xsd:anyURI property_value: has_relational_adjective "cremasteric" xsd:string [Term] id: UBERON:0008521 name: gluteus minimus def: "The smallest of the three gluteal muscles, situated immediately beneath the gluteus medius." [Wikipedia:Gluteus_minimus_muscle] subset: human_reference_atlas synonym: "glutaeus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus muscle" EXACT [] synonym: "gluteus profundus" RELATED [EMAPA:36230] synonym: "glutæus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "musculus gluteus minimus" RELATED OMO:0003011 [Wikipedia:Gluteus_minimus_muscle] xref: EMAPA:36230 xref: FMA:22317 xref: SCTID:181676004 xref: Wikipedia:Gluteus_minimus_muscle is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG" xsd:anyURI [Term] id: UBERON:0008522 name: nasal muscle def: "Any muscle organ that is part of an nose." [OBOL:automatic] synonym: "muscle of nose" EXACT [OBOL:automatic] xref: FMA:73758 xref: NCIT:C33158 xref: SCTID:244730009 xref: UMLS:C0224219 {source="ncithesaurus:Nasal_Muscle"} is_a: UBERON:0001577 {source="FMA"} ! facial muscle relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0008523 name: infrahyoid muscle def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [Wikipedia:Infrahyoid_muscles] subset: human_reference_atlas synonym: "infrahyoid" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoid muscle" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoidala" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "musculi infrahyoidei" RELATED OMO:0003011 [Wikipedia:Infrahyoid_muscles] synonym: "musculus infrahyoideus" EXACT OMO:0003011 [FMA:13338, FMA:TA] synonym: "strap muscle" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "strap muscles" RELATED [Wikipedia:Infrahyoid_muscles] xref: FMA:13338 xref: SCTID:244829008 xref: Wikipedia:Infrahyoid_muscles is_a: UBERON:0005493 ! hyoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/48/Infrahyoid_muscles.png" xsd:anyURI [Term] id: UBERON:0008529 name: piriformis muscle def: "The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]." [Wikipedia:Piriformis_muscle] subset: human_reference_atlas synonym: "m.piriformis" EXACT [FMA:19082] synonym: "musculus piriformis" RELATED OMO:0003011 [Wikipedia:Piriformis_muscle] synonym: "piriform muscle" RELATED [Wikipedia:Piriformis_muscle] synonym: "piriformis" EXACT [FMA:19082] synonym: "piriformis muscle" RELATED [Wikipedia:Piriformis_muscle] xref: EMAPA:36239 xref: FMA:19082 xref: SCTID:245019009 xref: Wikipedia:Piriformis_muscle is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG" xsd:anyURI [Term] id: UBERON:0008537 name: quadratus femoris def: "The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum." [Wikipedia:Quadratus_femoris_muscle] synonym: "musculus quadratus femoris" RELATED OMO:0003011 [Wikipedia:Quadratus_femoris_muscle] synonym: "quadratus femoris muscle" RELATED [Wikipedia:Quadratus_femoris_muscle] xref: EMAPA:36241 xref: FMA:22321 xref: SCTID:245020003 xref: Wikipedia:Quadratus_femoris_muscle is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG" xsd:anyURI [Term] id: UBERON:0008544 name: splenius cervicis def: "A muscle that arises from the spinous processes of the third to the sixth thoracic vertebrae and inserts into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae[WP,modified]." [Wikipedia:Splenius_cervicis_muscle] synonym: "musculus splenius cervicis" RELATED OMO:0003011 [Wikipedia:Splenius_cervicis_muscle] synonym: "splenius cervicis muscle" RELATED [Wikipedia:Splenius_cervicis_muscle] xref: FMA:22681 xref: Wikipedia:Splenius_cervicis_muscle is_a: UBERON:0002252 {source="FMA"} ! splenius property_value: action_notes "Bilaterally: Extend the head & neck, Unilaterally: Lateral flexion to the same side, Rotation to the same side." xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Musculus_splenius_cervicis.PNG" xsd:anyURI [Term] id: UBERON:0008546 name: iliocostalis cervicis muscle def: "The iliocostalis cervicis (cervicalis ascendens) arises from the angles of the third, fourth, fifth, and sixth ribs, and is inserted into the posterior tubercles of the transverse processes of the fourth, fifth, and sixth cervical vertebrae.." [Wikipedia:Iliocostalis#Iliocostalis_cervicis] synonym: "cervicalis ascendens" RELATED [Wikipedia:Iliocostalis] synonym: "cervicalis ascendens muscle" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis cervicis" RELATED [Wikipedia:Iliocostalis] xref: FMA:22704 xref: SCTID:244851000 xref: Wikipedia:Iliocostalis#Iliocostalis_cervicis is_a: UBERON:0002251 {source="FMA"} ! iliocostalis muscle [Term] id: UBERON:0008549 name: prevertebral muscle def: "One of the muscles deep to the prevertebral fascia on the anterior surface of the cervical and superior three thoracic vertebrae, symmetrically placed on each side of the median plane, including the longus colli, longus capitis, rectus capitis anterior, and rectus capitis lateralis muscles. innervated by anterior rami of cervical spinal nerves." [http://www.drugs.com/dict/prevertebral-muscles.html] comment: some authorities define the group as medial to the plane of the cervicobrachial plexus, and thus also include the anterior scalene muscle. Action notes: flexors of the head and neck subset: human_reference_atlas synonym: "flexor muscle of vertebral column" EXACT [FMA:32514] synonym: "prevertebral muscle" EXACT [FMA:32514] xref: FMA:32514 xref: Wikipedia:Prevertebral_muscles is_a: UBERON:0004518 ! muscle of vertebral column relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/b0/Prevertebral_muscles.png" xsd:anyURI [Term] id: UBERON:0008571 name: suprahyoid muscle def: "A muscle in the region above the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [Wikipedia:Suprahyoid_muscles] subset: human_reference_atlas synonym: "musculi suprahyoidei" RELATED OMO:0003011 [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoid" RELATED [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoidala" RELATED [Wikipedia:Suprahyoid_muscles] xref: FMA:46290 xref: SCTID:244824003 xref: Wikipedia:Suprahyoid_muscles is_a: UBERON:0005493 ! hyoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/58/Suprahyoid_muscles.png" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/697" xsd:anyURI [Term] id: UBERON:0008572 name: posterior crico-arytenoid def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [Wikipedia:Posterior_cricoarytenoid_muscle] subset: human_reference_atlas synonym: "cricoarytaenoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoarytænoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "musculus cricoarytenoideus posterior" RELATED OMO:0003011 [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoid" EXACT [FMA:46576] synonym: "posterior cricoarytenoid muscle" EXACT [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoideus" EXACT [FMA:46576] xref: FMA:46576 xref: SCTID:244812005 xref: Wikipedia:Posterior_cricoarytenoid_muscle is_a: UBERON:0010932 ! crico-arytenoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9d/Musculuscricoarytenoideusposterior.png" xsd:anyURI [Term] id: UBERON:0008573 name: lateral crico-arytenoid def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [Wikipedia:Lateral_cricoarytenoid_muscle] subset: human_reference_atlas synonym: "cricoarytaenoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytænoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytænoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoid" EXACT [FMA:46579] synonym: "lateral cricoarytenoid muscle" EXACT [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoideus" EXACT [FMA:46579] synonym: "musculus cricoarytenoideus lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_cricoarytenoid_muscle] xref: FMA:46579 xref: SCTID:244813000 xref: Wikipedia:Lateral_cricoarytenoid_muscle is_a: UBERON:0010932 ! crico-arytenoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/34/Musculuscricoarytenoideuslateralis.png" xsd:anyURI [Term] id: UBERON:0008574 name: transverse arytenoid def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [Wikipedia:Arytenoid_muscle] synonym: "arytenoid transversus" RELATED [] synonym: "tranverse arytenoid muscle" RELATED [Wikipedia:Transverse_arytenoid] xref: FMA:46582 xref: Wikipedia:Arytenoid_muscle is_a: UBERON:0010958 ! arytenoid muscle [Term] id: UBERON:0008575 name: oblique arytenoid def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [Wikipedia:Oblique_arytenoid_muscle] synonym: "arytenoid obliquus" RELATED [] synonym: "oblique arytenoid muscle" RELATED [Wikipedia:Oblique_arytenoid] xref: FMA:46583 xref: SCTID:244817004 xref: Wikipedia:Oblique_arytenoid_muscle is_a: UBERON:0010958 ! arytenoid muscle [Term] id: UBERON:0008576 name: thyro-arytenoid def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [Wikipedia:Thyroarytenoid_muscle] synonym: "musculus thyroarytenoideus" RELATED OMO:0003011 [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytænoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytænoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoepiglotticus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid %26 vocalis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid" EXACT [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytænoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] xref: FMA:46588 xref: NCIT:C33776 xref: SCTID:361814004 xref: UMLS:C0224183 {source="ncithesaurus:Thyroarytenoid_Muscle"} xref: Wikipedia:Thyroarytenoid_muscle is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png" xsd:anyURI [Term] id: UBERON:0008577 name: vocalis muscle def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [Wikipedia:Vocal_muscle] subset: human_reference_atlas synonym: "musculus vocalis" RELATED OMO:0003011 [Wikipedia:Vocal_muscle] synonym: "vocal muscle" EXACT [FMA:46591] synonym: "vocalis" EXACT [] xref: FMA:46591 xref: NCIT:C33886 xref: SCTID:244820007 xref: UMLS:C0224181 {source="ncithesaurus:Vocalis_Muscle"} xref: Wikipedia:Vocal_muscle is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle is_a: UBERON:0034681 ! vocal organ relationship: part_of UBERON:0008576 {source="FEED:rd", source="Wikipedia"} ! thyro-arytenoid relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png" xsd:anyURI property_value: external_ontology_notes "in FMA this is not placed under thyro-arytenoid but almost all sources consider this to be the case (confirmed with FEED:rd)" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0008582 name: superior longitudinal muscle of tongue def: "A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis linguæ superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "musculus longitudinalis superior" EXACT [FMA:46693] synonym: "musculus longitudinalis superior linguae" RELATED OMO:0003011 [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "superior lingualis" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "superior longitudinal muscle" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] xref: FMA:46693 xref: SCTID:244790006 xref: Wikipedia:Superior_longitudinal_muscle_of_tongue is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Musculuslongitudinalissuperiorlinguae.png" xsd:anyURI [Term] id: UBERON:0008583 name: transverse muscle of tongue def: "A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue] synonym: "intrinsic tongue muscle transverse component" EXACT [MA:0002328] synonym: "musculus transversus linguae" RELATED OMO:0003011 [Wikipedia:Transverse_muscle_of_tongue] synonym: "transverse lingual muscle" EXACT [FMA:46695] synonym: "transverse muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus linguae" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus linguæ" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue] xref: EMAPA:18281 xref: FMA:46695 xref: MA:0002328 xref: NCIT:C52706 xref: SCTID:244792003 xref: UMLS:C1708561 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component"} xref: Wikipedia:Transverse_muscle_of_tongue is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/14/Musculustransversuslinguae.png" xsd:anyURI [Term] id: UBERON:0008584 name: vertical muscle of tongue def: "A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue] synonym: "intrinsic tongue muscle vertical component" EXACT [MA:0002329] synonym: "musculus verticalis linguae" RELATED OMO:0003011 [Wikipedia:Vertical_muscle_of_tongue] synonym: "vertical lingual muscle" EXACT [FMA:46696] synonym: "vertical muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguae" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguae muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguæ" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguæ muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] xref: EMAPA:18282 xref: FMA:46696 xref: MA:0002329 xref: NCIT:C52708 xref: SCTID:244793008 xref: UMLS:C1708562 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component"} xref: Wikipedia:Vertical_muscle_of_tongue is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray1020.png" xsd:anyURI [Term] id: UBERON:0008585 name: levator veli palatini def: "The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side." [Wikipedia:Levator_veli_palatini] synonym: "levator palati" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli palatini muscle" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator velum palatini muscle" RELATED [Wikipedia:Levator_veli_palatini] synonym: "musculus levator veli palatini" RELATED OMO:0003011 [Wikipedia:Levator_veli_palatini] xref: FMA:46727 xref: SCTID:244795001 xref: Wikipedia:Levator_veli_palatini is_a: UBERON:0003682 {source="FMA"} ! palatal muscle is_a: UBERON:0015212 ! lateral structure property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Musculuslevatorvelipalatini.png" xsd:anyURI property_value: external_definition "The levator veli palatini is part of the soft palate that attaches to the cranial base, pharyngotympanic tube and the soft palate and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0008586 name: tensor veli palatini def: "The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate." [Wikipedia:Tensor_veli_palatini_muscle] subset: human_reference_atlas synonym: "musculus tensor veli palatini" RELATED OMO:0003011 [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati muscle" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor veli palatini" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor veli palatini muscle" EXACT [] xref: FMA:46730 xref: SCTID:361815003 xref: Wikipedia:Tensor_veli_palatini_muscle is_a: UBERON:0003682 {source="FMA"} ! palatal muscle is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Musculustensorvelipalatini.png" xsd:anyURI property_value: external_definition "The tensor veli palatini is a muscle of the soft palate that attaches to the cranial base and pharyngotympanic tube, wraps around the pterygoid hamulus and then attaches to the midline palatal raphe of the soft palate that is innervated by cranial nerve V3.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0008588 name: procerus def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [Wikipedia:Procerus_muscle] synonym: "depressor glabellae" RELATED OMO:0003011 [Wikipedia:Procerus_muscle] synonym: "musculus procerus glabellae" RELATED OMO:0003011 [Wikipedia:Procerus_muscle] synonym: "procerus muscle" RELATED [Wikipedia:Procerus_muscle] synonym: "pyramidalis nasi" RELATED OMO:0003011 [Wikipedia:Procerus_muscle] xref: FMA:46769 xref: SCTID:244731008 xref: Wikipedia:Procerus_muscle is_a: UBERON:0008522 {source="FMA"} ! nasal muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Procerus.png" xsd:anyURI [Term] id: UBERON:0008589 name: depressor septi nasi def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor alae nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor alæ nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor septi" EXACT [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor septi nasi muscle" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "musculus depressor septi nasi" RELATED OMO:0003011 [Wikipedia:Depressor_septi_nasi_muscle] xref: FMA:46777 xref: SCTID:244733006 xref: Wikipedia:Depressor_septi_nasi_muscle is_a: UBERON:0008522 {source="FMA"} ! nasal muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6c/Musculusdepressorseptinasi.PNG" xsd:anyURI [Term] id: UBERON:0008591 name: depressor supercilii def: "The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella." [Wikipedia:Depressor_supercilii_muscle] synonym: "depressor supercilii muscle" RELATED [Wikipedia:Depressor_supercilii_muscle] synonym: "musculus depressor supercilii" RELATED OMO:0003011 [Wikipedia:Depressor_supercilii_muscle] xref: FMA:46798 xref: SCTID:244728007 xref: Wikipedia:Depressor_supercilii_muscle is_a: UBERON:0001577 {source="FMA"} ! facial muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png" xsd:anyURI [Term] id: UBERON:0008592 name: levator labii superioris alaeque nasi def: "The levator labii superioris alaeque nasi muscle is, translated from Latin, the 'lifter of the upper lip and of the wing of the nose'. It has the longest name of any muscle in an animal." [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "alaeque" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "elvis muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "levator labii superioris alaequae nasi muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "levator labii superioris alaeque nasi" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "musculus levator labii superioris alaequae nasi" RELATED OMO:0003011 [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] xref: FMA:46802 xref: Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle is_a: UBERON:0001577 {source="FMA"} ! facial muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1c/Musculuslevatorlabiisuperiorisalaequenasi.png" xsd:anyURI [Term] id: UBERON:0008593 name: zygomaticus major muscle def: "Facial muscle attached to the modiolus, corner (angle) of the mouth, and zygomatic bone. See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000138] subset: feed_aligned subset: human_reference_atlas synonym: "auriculolabialis superior" RELATED [MFMO:0000138] synonym: "musculus zygomaticus major" RELATED OMO:0003011 [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic major" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic major muscle" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic muscle" EXACT [MFMO:0000138] synonym: "zygomaticcus major" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomaticus major" RELATED [Wikipedia:Zygomaticus_major_muscle] xref: FMA:46810 xref: MFMO:0000138 xref: NCIT:C53183 xref: SCTID:244739005 xref: SCTID:244740007 xref: UMLS:C0224115 {source="ncithesaurus:Zygomaticus_Major"} xref: Wikipedia:Zygomaticus_major_muscle is_a: UBERON:0010437 {is_inferred="true"} ! zygomaticus muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Zygomaticus.png" xsd:anyURI [Term] id: UBERON:0008594 name: zygomaticus minor muscle def: "Facial muscle attached to the modiolus, corner (angle) of the mouth, and zygomatic bone. This muscle is ventral to the zygomaticus minor and dorsal to the platysma muscle. In many mammals this muscle also has an attachment to the cartilage of the external ear, in which case it is called the auriculolabialis inferior. See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000138] subset: feed_aligned subset: human_reference_atlas synonym: "auriculolabialis superior" NARROW [] synonym: "auriculolabialis superior" RELATED [MFMO:0000137] synonym: "musculus quadratus labii superioris, zygomatic head" EXACT [MFMO:0000137] synonym: "musculus zygomaticus minor" EXACT [MFMO:0000137] synonym: "square muscle of the upper lip, zygomatic head" EXACT [MFMO:0000137] xref: FMA:46811 xref: MFMO:0000137 xref: NCIT:C53184 xref: SCTID:244741006 xref: UMLS:C0224116 {source="ncithesaurus:Zygomaticus_Minor"} xref: Wikipedia:Zygomaticus_minor_muscle is_a: UBERON:0010437 ! zygomaticus muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Musculuszygomaticusminor.png" xsd:anyURI [Term] id: UBERON:0008595 name: levator anguli oris def: "The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris." [Wikipedia:Levator_anguli_oris_muscle] subset: human_reference_atlas synonym: "caninus" RELATED [Wikipedia:Levator_anguli_oris] synonym: "caninus muscle" RELATED [Wikipedia:Levator_anguli_oris] synonym: "levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris] synonym: "levator anguli oris muscle" EXACT [Wikipedia:Levator_anguli_oris] synonym: "musculus levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris] xref: FMA:46822 xref: SCTID:141501002 xref: Wikipedia:Levator_anguli_oris_muscle is_a: UBERON:0001577 {source="FMA"} ! facial muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0008596 name: mentalis muscle def: "A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip and inferior to the lower lip (in humans this region is called the chin or mental region), the orbicularis oris muscle, and the mandible in the symphyseal region. See Diogo et al., 2009; Burrows et al., 2011)." [MFMO:0000122] subset: human_reference_atlas synonym: "mentalis" EXACT [MFMO:0000122] synonym: "musculus mentalis" EXACT OMO:0003011 [Wikipedia:Mentalis] xref: FMA:46825 xref: MFMO:0000122 xref: SCTID:244744003 xref: Wikipedia:Mentalis is_a: UBERON:0001577 {source="MFMO"} ! facial muscle is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0015212 ! lateral structure relationship: mutually_spatially_disjoint_with UBERON:0001581 {source="FEED"} ! depressor labii inferioris relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/37/Mentalis.png" xsd:anyURI [Term] id: UBERON:0008597 name: depressor anguli oris muscle def: "The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth." [Wikipedia:Depressor_anguli_oris_muscle] subset: human_reference_atlas synonym: "depressor anguli oris" RELATED [Wikipedia:Depressor_anguli_oris_muscle] synonym: "musculus depressor anguli oris" RELATED OMO:0003011 [Wikipedia:Depressor_anguli_oris_muscle] synonym: "triangularis" RELATED [Wikipedia:Depressor_anguli_oris_muscle] synonym: "triangularis muscle" RELATED [Wikipedia:Depressor_anguli_oris_muscle] xref: EMAPA:37842 {source="MA:th"} xref: FMA:46828 xref: SCTID:361812000 xref: Wikipedia:Depressor_anguli_oris_muscle is_a: UBERON:0001577 {source="FMA"} ! facial muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png" xsd:anyURI [Term] id: UBERON:0008598 name: risorius muscle def: "Facial muscle that attaches to the fascia of the masseter muscle and the facia of the skin in the region of the corner (angle) of the mouth. Even in species in which this muscle is present, it is highly variable. A true risorius muscle may only be present in Hominins (humans and great apes). See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000141] subset: feed_aligned subset: human_reference_atlas synonym: "musculus risorius" EXACT OMO:0003011 [Wikipedia:Risorius] synonym: "risorius" EXACT [MFMO:0000141] xref: FMA:46838 xref: MFMO:0000141 xref: SCTID:244755003 xref: Wikipedia:Risorius is_a: UBERON:0001577 {source="MFMO"} ! facial muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Musculusrisorius.png" xsd:anyURI [Term] id: UBERON:0008603 name: helicis major def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [Wikipedia:Helicis_major] synonym: "helicis major muscle" RELATED [] synonym: "musculus helicis major" EXACT OMO:0003011 [Wikipedia:Helicis_major] xref: FMA:48968 xref: SCTID:244764008 xref: Wikipedia:Helicis_major is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png" xsd:anyURI [Term] id: UBERON:0008604 name: helicis minor def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [Wikipedia:Helicis_minor] synonym: "helicis minor muscle" RELATED [] synonym: "musculus helicis minor" RELATED OMO:0003011 [Wikipedia:Helicis_minor] xref: FMA:48971 xref: SCTID:244765009 xref: Wikipedia:Helicis_minor is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png" xsd:anyURI [Term] id: UBERON:0008605 name: tragicus muscle def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [Wikipedia:Tragicus] synonym: "musculus tragicus" RELATED OMO:0003011 [Wikipedia:Tragicus] synonym: "tragicus" EXACT [FMA:48974] synonym: "tragicus muscle" RELATED [] xref: FMA:48974 xref: SCTID:244766005 xref: Wikipedia:Tragicus is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png" xsd:anyURI [Term] id: UBERON:0008606 name: antitragicus muscle def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [Wikipedia:Antitragicus] synonym: "antitragicus" EXACT [FMA:48980] synonym: "antitragicus muscle" RELATED [] synonym: "musculus antitragicus" RELATED OMO:0003011 [Wikipedia:Antitragicus] xref: FMA:48980 xref: SCTID:63899000 xref: Wikipedia:Antitragicus is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Musculusantitragicus.png" xsd:anyURI [Term] id: UBERON:0008607 name: transverse muscle of auricle def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [Wikipedia:Transverse_muscle_of_auricle] synonym: "musculus transversus auriculae" RELATED OMO:0003011 [Wikipedia:Transverse_muscle_of_auricle] synonym: "transverse muscle of pinna" EXACT [FMA:48983] synonym: "transversus auriculae" EXACT [Wikipedia:Transverse_muscle_of_auricle] synonym: "transversus auricularis" EXACT [FMA:48983] xref: FMA:48983 xref: SCTID:244767001 xref: Wikipedia:Transverse_muscle_of_auricle is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png" xsd:anyURI [Term] id: UBERON:0008608 name: oblique muscle of auricle def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [Wikipedia:Oblique_muscle_of_auricle] synonym: "musculus obliquus auriculae" RELATED OMO:0003011 [Wikipedia:Oblique_muscle_of_auricle] synonym: "oblique muscle of pinna" EXACT [FMA:48986] synonym: "obliquus auriculae" EXACT [Wikipedia:Oblique_muscle_of_auricle] synonym: "obliquus auricularis muscle" EXACT [FMA:48986] synonym: "obliquus auriculæ" RELATED [Wikipedia:Oblique_muscle_of_auricle] xref: FMA:48986 xref: SCTID:244768006 xref: Wikipedia:Oblique_muscle_of_auricle is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png" xsd:anyURI [Term] id: UBERON:0008609 name: transversus menti muscle def: "The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face." [Wikipedia:Transverse_muscle_of_the_chin] subset: human_reference_atlas synonym: "musculus transversus menti" RELATED OMO:0003011 [Wikipedia:Transverse_muscle_of_the_chin] synonym: "transverse menti" EXACT [FMA:49080] synonym: "transversus menti" RELATED [Wikipedia:Transverse_muscle_of_the_chin] xref: FMA:49080 xref: Wikipedia:Transverse_muscle_of_the_chin is_a: UBERON:0001577 {source="FMA"} ! facial muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png" xsd:anyURI [Term] id: UBERON:0008611 name: scalene muscle def: "Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]." [Wikipedia:Scalene_muscles] synonym: "lateral cervical muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral cervical muscles" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral vertebral muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "m scalenus" RELATED [Wikipedia:Scalene_muscles] synonym: "scalene muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "scalene muscles" EXACT [Wikipedia:Scalene_muscles] synonym: "scalenes" RELATED [Wikipedia:Scalene_muscles] synonym: "scaleneus" RELATED [Wikipedia:Scalene_muscles] synonym: "scaleni" RELATED [Wikipedia:Scalene_muscles] synonym: "scalenus" RELATED [Wikipedia:Scalene_muscles] synonym: "scalenus muscle" EXACT [FMA:64829] xref: FMA:64829 xref: NCIT:C33517 xref: SCTID:244843003 xref: UMLS:C0448350 {source="ncithesaurus:Scalene_Muscle"} xref: Wikipedia:Scalene_muscles is_a: UBERON:0002377 {source="FMA"} ! muscle of neck is_a: UBERON:0004518 ! muscle of vertebral column property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6e/Scalenus.png" xsd:anyURI [Term] id: UBERON:0008612 name: muscle of pelvic diaphragm def: "A muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. It separates the pelvic cavity above from the perineal region below." [http://www.dartmouth.edu/~humananatomy/part_6/chapter_37.html] synonym: "diaphragm of the pelvis" RELATED [Wikipedia:Pelvic_floor] synonym: "diaphragma pelvis" RELATED OMO:0003011 [Wikipedia:Pelvic_floor] synonym: "muscle of pelvic floor" EXACT [FMA:64856] synonym: "pelvic diaphragm" RELATED [Wikipedia:Pelvic_floor] synonym: "pelvic diaphragm muscle" EXACT [FMA:64856] synonym: "pelvic floor muscles" RELATED [Wikipedia:Pelvic_floor] synonym: "pelvic muscles" RELATED [Wikipedia:Pelvic_floor] xref: FMA:64856 xref: NCIT:C33290 xref: SCTID:367748001 xref: UMLS:C0932441 {source="ncithesaurus:Pelvic_Floor_Muscle"} xref: Wikipedia:Pelvic_floor is_a: UBERON:0001325 {source="FMA"} ! muscle of pelvis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png" xsd:anyURI [Term] id: UBERON:0008617 name: innermost intercostal muscle def: "The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly." [Wikipedia:Innermost_intercostal_muscle] subset: human_reference_atlas synonym: "musculus intercostalis intimus" RELATED OMO:0003011 [Wikipedia:Innermost_intercostal_muscle] xref: FMA:9758 xref: SCTID:368054008 xref: Wikipedia:Innermost_intercostal_muscle is_a: UBERON:0001111 {source="FMA"} ! intercostal muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0008618 name: subcostal muscle def: "The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni." [Wikipedia:Subcostalis_muscle] subset: human_reference_atlas synonym: "musculus subcostalis" RELATED OMO:0003011 [Wikipedia:Subcostalis_muscle] synonym: "subcostal muscles" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales muscle" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales muscles" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostalis" RELATED [Wikipedia:Subcostalis_muscle] xref: FMA:9759 xref: SCTID:244914005 xref: Wikipedia:Subcostalis_muscle is_a: UBERON:0002426 {source="FMA"} ! chest muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0008622 name: scalenus anterior def: "The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove." [Wikipedia:Scalenus_anterior] synonym: "anterior scalene" EXACT [Wikipedia:Scalenus_anterior] synonym: "musculus scalenus anterior" RELATED OMO:0003011 [Wikipedia:Scalenus_anterior] synonym: "scalenus anterior muscle" RELATED [Wikipedia:Scalenus_anterior] synonym: "scalenus anticus" RELATED [Wikipedia:Scalenus_anterior] xref: FMA:13385 xref: SCTID:181742002 xref: Wikipedia:Scalenus_anterior is_a: UBERON:0008611 {source="FMA"} ! scalene muscle property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/Scalenus_anterior.png" xsd:anyURI [Term] id: UBERON:0008712 name: stylohyoid muscle def: "The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal and the non-stylohyal part of the hyoid apparatus." [MFMO:0000061] subset: human_reference_atlas synonym: "musculus stylohyoideus" RELATED OMO:0003011 [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoid" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus muscle" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus muscles" RELATED [Wikipedia:Stylohyoid_muscle] xref: FMA:9625 xref: MFMO:0000061 xref: SCTID:244826001 xref: Wikipedia:Stylohyoid_muscle is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Musculi_colli_stylohyoideus.svg" xsd:anyURI property_value: external_definition "The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0008713 name: pectoral girdle and thoracic body wall skeletal muscle xref: EHDAA2:0001421 xref: EMAPA:17748 xref: RETIRED_EHDAA2:0001422 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0008715 name: muscle tissue of prostate def: "A muscle tissue that is part of a prostate gland." [OBOL:automatic] synonym: "prostate gland muscle tissue" EXACT [OBOL:automatic] synonym: "prostate muscle tissue" EXACT [OBOL:automatic] synonym: "prostatic muscle" EXACT [] synonym: "prostatic musclular tissue" EXACT [] xref: NCIT:C13100 xref: SCTID:251498008 xref: UMLS:C1183911 {source="ncithesaurus:Prostatic_Muscular_Tissue"} is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0008716 name: hilum of kidney def: "An opening on medial margin of the kidney leading into the renal sinus. he renal vessels enter/leave the kidney at the hilum; the renal pelvis leaves the kidney at the hilum." [http://anatomy.uams.edu/anatomyhtml/kidney.html] synonym: "hilar area of the kidney" EXACT [] synonym: "renal hilum" EXACT [FMA:15610] xref: FMA:15610 xref: galen:HilumOfKidney xref: NCIT:C32740 xref: SCTID:279370006 xref: UMLS:C0227608 {source="ncithesaurus:Hilar_Area_of_the_Kidney"} xref: Wikipedia:Hilum_of_kidney is_a: UBERON:0004885 ! hilum relationship: part_of UBERON:0002113 ! kidney property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI [Term] id: UBERON:0008772 name: proximal epiphysis of tibia def: "A proximal epiphysis that is part of a tibia." [OBOL:automatic] subset: pheno_slim synonym: "head of tibia" EXACT [FMA:33113] synonym: "proximal end of tibia" EXACT [FMA:33113] synonym: "proximal tibial epiphysis" EXACT [] synonym: "upper end of tibia" EXACT [FMA:33113] xref: FMA:33113 xref: NCIT:C32722 xref: SCTID:302526005 xref: UMLS:C0932431 {source="ncithesaurus:Head_of_the_Tibia"} xref: Wikipedia:Upper_extremity_of_tibia is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004383 ! epiphysis of tibia [Term] id: UBERON:0008775 name: proximal epiphysis of fibula def: "A proximal epiphysis that is part of a fibula." [OBOL:automatic] subset: pheno_slim synonym: "caput fibulae" EXACT OMO:0003011 [Wikipedia:Head_of_fibula] synonym: "fibular head" RELATED [FMA:33729] synonym: "head of fibula" EXACT [FMA:33729] synonym: "proximal end of fibula" EXACT [FMA:33729] synonym: "upper end of fibula" EXACT [FMA:33729] xref: EMAPA:37890 {source="MA:th"} xref: FMA:33729 xref: galen:HeadOfFibula xref: NCIT:C32719 xref: SCTID:182080006 xref: UMLS:C0223908 {source="ncithesaurus:Head_of_the_Fibula"} xref: Wikipedia:Head_of_fibula is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004388 ! epiphysis of fibula property_value: external_definition "The upper extremity or head of the fibula is of an irregular quadrate form, presenting above a flattened articular surface, directed upward, forward, and medialward, for articulation with a corresponding surface on the lateral condyle of the tibia. On the lateral side is a thick and rough prominence continued behind into a pointed eminence, the apex, which projects upward from the posterior part of the head. The prominence, at its upper and lateral part, gives attachment to the tendon of the Biceps femoris and to the fibular collateral ligament of the knee-joint, the ligament dividing the tendon into two parts. The remaining part of the circumference of the head is rough, for the attachment of muscles and ligaments. It presents in front a tubercle for the origin of the upper and anterior fibers of the Peronæus longus, and a surface for the attachment of the anterior ligament of the head; and behind, another tubercle, for the attachment of the posterior ligament of the head and the origin of the upper fibers of the Soleus[Wikipedia:Head_of_fibula]." xsd:string {source="Wikipedia:Head_of_fibula"} [Term] id: UBERON:0008776 name: inner cell mass derived hypoblast alt_id: UBERON:0000417 alt_id: UBERON:0003225 alt_id: UBERON:0003226 def: "A thin monolayer of small cuboidal cells that make up the lower layer of the bilaminar embryonic disc, beneath the epiblast." [MP:0011183] subset: early_development subset: pheno_slim synonym: "hypoblast" RELATED SENSU [GO:0090008, ISBN:9780878932504, VHOG:0001222] synonym: "primary endoderm" RELATED [MP:0011185] synonym: "primitive endoderm" EXACT [ISBN:9780878932504, MP:0011185] synonym: "proximal endoderm" RELATED [EMAPA:16051] synonym: "visceral endoderm" RELATED [ISBN:9780878932504] xref: BTO:0002123 xref: EHDAA2:0000796 xref: EHDAA:44 xref: EHDAA:79 xref: EMAPA:16051 xref: FMA:85520 xref: Wikipedia:Hypoblast is_a: UBERON:0000089 ! hypoblast (generic) relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass relationship: part_of UBERON:0000091 ! bilaminar disc property_value: taxon_notes "This layer can be distinguished from the overlying epiblast in the mouse embryo as early as day 4.5, and day 7 in human). The cells of the hypoblast are not thought to contribute to the developing embryo proper, but contribute to several extraembryonic structures. In rodents, the hypoblast cells form the parietal endoderm, parietal and visceral yolk sac as well as extraembryonic membranes, such as the extraembryonic endoderm, the yolk sac and the stalk that links it to the endodermal digestive tube. In human embryos, hypoblast cells migrate and line the blastocoelic cavity of the blastocyst, forming the primary yolk sac and Heuser's membrane. Although both the murine parietal yolk sac and the human primary yolk sac are transient structures, they are not developmental equivalents. A second wave of hypoblast cells migrates to form the definitive yolk sac which displaces the primary yolk sac and is equivalent to the murine visceral yolk sac. The primary yolk sac breaks up into small vesicles that can persist at the mural (abembryonic) pole." xsd:string {source="MP:0011183"} [Term] id: UBERON:0008777 name: hypaxial musculature def: "Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles." [Wikipedia:Epaxial_and_Hypaxial_muscles] synonym: "hypaxial muscle" RELATED [XAO:0003228] synonym: "hypaxial muscles" EXACT OMO:0003004 [] xref: AAO:0000228 xref: EMAPA:37852 {source="MA:th"} xref: Wikipedia:Epaxial_and_Hypaxial_muscles xref: XAO:0003228 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004479 ! musculature of trunk relationship: develops_from UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:0001774 {source="XAO"} ! skeletal muscle of trunk property_value: external_definition "Trunk muscle that lies ventral to the horizontal septum of the vertebrae.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000228", ontology="AAO", source="UBERON:0008777"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/686" xsd:anyURI property_value: taxon_notes "The hypaxial muscles are located on the lower side of the body, often below the horizontal septum in many species (primarily fish and amphibians). In amniotes, the positional distinctions have been lost as the body's muscles have changed through evolution, but in all species, the hypaxial muscles are innervated by the ventral ramus of the spinal nerves, while the epaxial muscles are innervated by the dorsal ramus." xsd:string {source="WP"} [Term] id: UBERON:0008778 name: epaxial musculature def: "Musculature that is derived from the epaxial myotome region, ventral to the horizontal septum of the vertebrae. Epaxial muscles include other (dorsal) muscles associated with the vertebrae, ribs, and base of the skull." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Epaxial_and_hypaxial_muscles] subset: pheno_slim synonym: "epaxial muscle" RELATED [XAO:0003229] synonym: "epaxial muscles" EXACT OMO:0003004 [] xref: AAO:0000142 xref: EMAPA:37851 {source="MA:th"} xref: XAO:0003229 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004479 ! musculature of trunk relationship: develops_from UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:0001774 {source="XAO"} ! skeletal muscle of trunk property_value: external_definition "the muscles derived from the medial myotome; includes the intrinsic back muscles" xsd:string {source="MP:0004248,PMID:1591996"} property_value: external_definition "Trunk muscles that lies dorsal to the horizontal septum.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000142", ontology="AAO", source="XAO:curator"} property_value: taxon_notes "In humans, the erector spinae, the transversospinal muscles (including the multifidus, semispinalis and rotatores), the splenius and suboccipital muscles are the only epaxial muscles" xsd:string property_value: taxon_notes "The hypaxial muscles are located on the lower side of the body, often below the horizontal septum in many species (primarily fish and amphibians). In amniotes, the positional distinctions have been lost as the body's muscles have changed through evolution, but in all species, the hypaxial muscles are innervated by the ventral ramus of the spinal nerves, while the epaxial muscles are innervated by the dorsal ramus." xsd:string {source="WP"} [Term] id: UBERON:0008779 name: subclavius def: "The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla." [Wikipedia:Subclavius_muscle] synonym: "musculus subclavius" RELATED OMO:0003011 [Wikipedia:Subclavius_muscle] synonym: "subclavicular muscle" RELATED [Wikipedia:Subclavius_muscle] xref: FMA:13410 xref: NCIT:C33644 xref: UMLS:C0224348 {source="ncithesaurus:Subclavius"} xref: Wikipedia:Subclavius_muscle is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray411subclavius.png" xsd:anyURI [Term] id: UBERON:0008780 name: inner cell mass derived epiblast def: "An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers." [MP:0003886] comment: The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. subset: early_development subset: pheno_slim synonym: "embryonic epiblast" RELATED [MP:0003886] xref: EHDAA2:0000444 xref: EHDAA:42 xref: EHDAA:75 xref: EMAPA:16050 xref: NCIT:C34164 xref: UMLS:C1516906 {source="ncithesaurus:Epiblast"} is_a: UBERON:0002532 ! epiblast (generic) relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass relationship: part_of UBERON:0000091 ! bilaminar disc [Term] id: UBERON:0008781 name: blastodisc derived epiblast def: "An epiblast (generic) that develops_from a blastodisc." [OBOL:automatic] subset: early_development xref: TAO:0000018 xref: ZFA:0000018 is_a: UBERON:0002532 ! epiblast (generic) relationship: develops_from UBERON:0004749 {source="Wikipedia"} ! blastodisc relationship: dubious_for_taxon NCBITaxon:40674 relationship: part_of UBERON:0002541 {source="ZFA"} ! germ ring property_value: axiom_lost_from_external_ontology "relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: develops_from embryonic structure (UBERON:0002050)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000018", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: part_of embryonic structure (UBERON:0002050)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000018", ontology="TAO"} property_value: external_definition "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000018", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "part of blastodisc in BTO; indirect development in ZFA: df DEL df deep blastomere isa blastomere po blastodisc" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0008783 name: dorsal venous arch def: "The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein." [Wikipedia:Dorsal_venous_arch_of_the_foot] subset: human_reference_atlas synonym: "arcus venosus dorsalis pedis" EXACT [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "arcus venosus dorsalis pedis" RELATED OMO:0003011 [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "dorsal venous arch of foot" EXACT [FMA:44356] xref: EMAPA:37521 {source="MA:th"} xref: FMA:44356 xref: MA:0002110 xref: SCTID:231189006 xref: Wikipedia:Dorsal_venous_arch_of_the_foot is_a: UBERON:0001638 {source="MA"} ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray581.png" xsd:anyURI [Term] id: UBERON:0008784 name: lower limb segment def: "A limb segment that is part of a hindlimb." [OBOL:automatic] synonym: "free lower limb segment" EXACT [FMA:24877] synonym: "free lower limb subdivision" EXACT [FMA:24877] synonym: "segment of free lower limb" EXACT [FMA:24877] synonym: "subdivision of free lower limb" EXACT [FMA:24877] xref: FMA:24877 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0008785 name: upper limb segment def: "A limb segment that is part of a forelimb." [OBOL:automatic] synonym: "free upper limb segment" EXACT [FMA:24876] synonym: "free upper limb subdivision" EXACT [FMA:24876] synonym: "segment of free upper limb" EXACT [FMA:24876] synonym: "subdivision of free upper limb" EXACT [FMA:24876] xref: FMA:24876 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0008786 name: third trochanter def: "The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed." [Wikipedia:Third_trochanter] synonym: "trochanter tertius" RELATED OMO:0003011 [Wikipedia:Third_trochanter] xref: FMA:75824 xref: Wikipedia:Third_trochanter is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2b/Third_trochanter-tweaked.png" xsd:anyURI property_value: taxon_notes "underdeveloped / not present in humans" xsd:string [Term] id: UBERON:0008787 name: fourth trochanter def: "A knob-like feature on the medial side of the femur that serves as a muscle attachment." [Wikipedia:Fourth_trochanter] comment: The fourth trochanter first appeared in the Erythrosuchidae, large basal archosaurian predators of the early Triassic period. This seemingly insignificant detail may have made the evolution of dinosaurs possible (all early dinosaurs and many later ones were bipeds), and may also be connected with the ability of the archosaurs or their immediate ancestors to survive the catastrophic Permian-Triassic extinction event[WP]. xref: Wikipedia:Fourth_trochanter is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter [Term] id: UBERON:0008788 name: posterior cranial fossa def: "The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE." [MESH:A01.456.830.200, Wikipedia:Posterior_cranial_fossa] subset: pheno_slim synonym: "fossa cranii posterior" RELATED OMO:0003011 [Wikipedia:Posterior_cranial_fossa] synonym: "posterior fossa" BROAD [ncithesaurus:Posterior] xref: CALOHA:TS-2354 xref: FMA:54368 xref: GAID:85 xref: MESH:D003388 xref: NCIT:C33361 xref: UMLS:C0010265 {source="ncithesaurus:Posterior_Fossa"} xref: Wikipedia:Posterior_cranial_fossa is_a: UBERON:0008789 ! cranial fossa property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c2/Posterior_fossa.png" xsd:anyURI [Term] id: UBERON:0008789 name: cranial fossa def: "Any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity." [http://mw1.merriam-webster.com/medical/cranial%20fossa] xref: FMA:321144 is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0004766 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! cranial bone property_value: editor_note "todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae" xsd:string [Term] id: UBERON:0008790 name: rugal fold def: "A ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [http://medical-dictionary.thefreedictionary.com/Rugal+folds, Wikipedia:Rugae] synonym: "ruga" EXACT [Wikipedia:Rugae] synonym: "rugae" RELATED OMO:0003004 [Wikipedia:Rugae] xref: Wikipedia:Rugae is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000344 ! mucosa property_value: editor_note "As currently defined this encompasses only mucuous membranes, and not for example rugal folds of skin such as the scrotal rugae" xsd:string [Term] id: UBERON:0008791 name: rugal fold of stomach def: "A rugal fold that is part of a stomach." [OBOL:automatic] synonym: "gastric ruga" EXACT [FMA:15106] synonym: "gastric ruga(e)" RELATED [FMA:15106] synonym: "gastric rugae" EXACT OMO:0003004 [FMA:15106] synonym: "ruga of stomach" EXACT [FMA:15106] xref: FMA:15106 xref: NCIT:C32660 xref: SCTID:268518001 xref: UMLS:C0227199 {source="ncithesaurus:Gastric_Rugae"} xref: Wikipedia:Gastric_rugae is_a: UBERON:0008790 ! rugal fold relationship: part_of UBERON:0001199 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of stomach [Term] id: UBERON:0008798 name: rugal fold of vagina def: "A rugal fold that is part of a vagina." [OBOL:automatic] synonym: "ruga of vagina" EXACT [FMA:19991] synonym: "vaginal ruga" EXACT [FMA:19991] xref: FMA:19991 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008790 ! rugal fold relationship: part_of UBERON:0004983 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of vagina [Term] id: UBERON:0008799 name: transverse palatine fold def: "Any of the the series of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species." [MP:0009652] subset: pheno_slim synonym: "hard palate palatal rugae" EXACT OMO:0003004 [EMAPA:35638] synonym: "hard palate ruga" EXACT [] synonym: "impressiones rugales" EXACT OMO:0003004 [https://orcid.org/0000-0002-6601-2165] synonym: "palatal rugae" EXACT [MP:0009652] synonym: "palatine fold" EXACT [FMA:75652] synonym: "palatine rugae" EXACT OMO:0003004 [FMA:75652] synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] synonym: "plicae palatinae transversae" EXACT OMO:0003011 [FMA:75652, FMA:TA] synonym: "ruga of palate" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] synonym: "rugae of palate" EXACT OMO:0003004 [https://orcid.org/0000-0002-6601-2165] synonym: "rugae palatinae" EXACT OMO:0003004 [FMA:75652, FMA:TA] synonym: "set of transverse palatine folds" RELATED [FMA:75652] synonym: "transverse palatine folds" EXACT OMO:0003004 [FMA:75652] synonym: "transverse palatine folds set" EXACT OMO:0003004 [FMA:75652] synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] xref: EMAPA:35638 xref: FMA:75652 is_a: UBERON:0008790 ! rugal fold relationship: part_of UBERON:0005046 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of hard palate property_value: external_definition "A masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances." xsd:string {source="http://www.drugs.com/dict/transverse-palatine-fold.html"} property_value: external_ontology_notes "this class refers to the singular and the FMA class refers to the set. In future this class may be split." xsd:string {external_ontology="FMA"} property_value: structure_notes "rugae are present on each side of the median palatal raphe and behind the incisive papillae, but their number and arrangement are species specific; together with the teeth and the tongue, rugae take part in mastication by helping to sense, hold and mash the food; rugae harbor various types of intraepithelial sensory structures (such as Merckel cells, corpuscular endings and free nerve endings), and play a sensory role when the food is pressed by the tongue against the hard palate[MP]" xsd:string [Term] id: UBERON:0008800 name: parietal endoderm def: "Primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]." [MP:0011187, PMID:19201946] subset: pheno_slim synonym: "distal endoderm" RELATED [EMAPA:16053] xref: EMAPA:16053 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0016888 {source="cjm"} ! transitional anatomical structure relationship: develops_from UBERON:0008780 {source="MP"} ! inner cell mass derived epiblast [Term] id: UBERON:0008801 name: parotid gland primordium xref: EHDAA2:0001413 xref: EHDAA:9246 is_a: UBERON:0001048 {source="Obol"} ! primordium [Term] id: UBERON:0008802 name: cheek pouch def: "A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food." [BTO:0002224] synonym: "buccal pouch" EXACT [] xref: BTO:0002224 xref: EMAPA:37452 {source="MA:th"} xref: MA:0003059 xref: NCIT:C111156 xref: SCTID:31293007 xref: Wikipedia:Cheek_pouch is_a: UBERON:0008803 ! skin of cheek relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0008803 name: skin of cheek def: "A zone of skin that is part of a cheek." [OBOL:automatic] subset: pheno_slim synonym: "cheek skin" EXACT [FMA:24759] xref: FMA:24759 xref: SCTID:181472009 is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0008804 name: stylopharyngeus muscle def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle] subset: human_reference_atlas synonym: "M. stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "musculus stylopharyngeus" RELATED OMO:0003011 [Wikipedia:Stylopharyngeus_muscle] synonym: "stylopharyngeus" EXACT [Wikipedia:Stylopharyngeus_muscle] xref: FMA:46664 xref: NCIT:C33639 xref: SCTID:244806000 xref: UMLS:C1522014 {source="ncithesaurus:Stylopharyngeus"} xref: Wikipedia:Stylopharyngeus_muscle is_a: UBERON:0000933 {source="FMA"} ! chordate pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/59/Musculusstylopharyngeus.png" xsd:anyURI property_value: external_definition "The stylopharyngeus is a pharyngeal arch III muscle that participates in oral/pharyngeal behaviors and is innervated by the n. to stylopharyngeus branch of the glossopharyngeal n. and attaches to the hyoid apparatus and the pharynx.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0008805 name: gingival groove def: "The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin." [Wikipedia:Gingival_sulcus] synonym: "gingival sulcus" EXACT [FMA:74580] synonym: "sulcus gingivalis" EXACT OMO:0003011 [FMA:TA] synonym: "sulcus gingivalis" RELATED OMO:0003011 [Wikipedia:Gingival_sulcus] synonym: "tooth-gingiva interface" EXACT [] xref: FMA:74580 xref: NCIT:C114645 xref: SCTID:245753001 xref: Wikipedia:Gingival_sulcus is_a: UBERON:0000093 ! sulcus relationship: part_of UBERON:0000165 ! mouth property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5e/Gingival_sulcus.PNG" xsd:anyURI [Term] id: UBERON:0008806 name: buccal funnel synonym: "suctorial disc" EXACT [] synonym: "suctorial disk" EXACT [] is_a: UBERON:0000166 ! oral opening [Term] id: UBERON:0008807 name: coagulating gland def: "A lobe of the prostate in rodents that is thin and tubular and is attached to the lesser curvature of the paired seminal vesicles. Secretes substances that contribute to the formation of the copulatory plug." [MP:0002771, PMID:12645922, PMID:1806140, PMID:3308446] subset: pheno_slim synonym: "anterior prostate gland" RELATED [EMAPA:29794] synonym: "prostate gland anterior lobe" RELATED [MA:0000402, MP:0002771] xref: BTO:0000265 xref: EMAPA:29794 xref: MA:0000402 xref: NCIT:C77618 xref: SCTID:78779004 is_a: UBERON:0010147 ! male accessory sex gland relationship: part_of UBERON:0002367 {not_supported_by="MA", source="EMAPA"} ! prostate gland property_value: taxon_notes "In rodents, the prostate gland consists of three lobes, the anterior prostate (AP; also known as the coagulating gland), the dorsolateral prostate (DLP), and the ventral prostate (VP). These lobes are arranged circumferentially around the urethra and display characteristic patterns of ductal branching and protein secretion (PMID:3308446). In contrast, the adult human prostate lacks discernible lobular organization and, instead, completely envelops the urethra at the base of the bladder (PMID:3308446).[MP]" xsd:string [Term] id: UBERON:0008808 name: prostate gland dorsolateral lobe def: "The rodent prostate lobe that lies in the triangular area between urethra and seminal vesicle." [MP:0009381, PMID:12645922, PMID:3308446] subset: pheno_slim synonym: "dorsolateral prostate" RELATED [] xref: BTO:0000541 xref: EMAPA:35710 xref: MA:0001739 is_a: UBERON:0001328 {source="MA"} ! lobe of prostate [Term] id: UBERON:0008809 name: foramina of scarpa def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [Wikipedia:Foramina_of_Scarpa] synonym: "foramina of scarpa" RELATED [Wikipedia:Foramina_of_Scarpa] xref: Wikipedia:Foramina_of_Scarpa is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005871 ! palatine process of maxilla property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png" xsd:anyURI [Term] id: UBERON:0008810 name: nasopalatine nerve def: "A branch of that maxillary nerve that innervates the mucous membrane of the hard palate." [http://medical-dictionary.thefreedictionary.com/nasopalatine+nerve, UBERON:cjm] subset: human_reference_atlas synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nervus nasopalatinus" RELATED OMO:0003011 [Wikipedia:Nasopalatine_nerve] synonym: "Scarpa's nerve" EXACT [FMA:52797] xref: BAMS:npal xref: FMA:52797 xref: Wikipedia:Nasopalatine_nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png" xsd:anyURI [Term] id: UBERON:0008811 name: intromittent organ def: "An external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]." [Wikipedia:Intromittent_organ] subset: grouping_class subset: organ_slim synonym: "aedeagus" NARROW SENSU [FBbt:00004850] synonym: "copulatory organ" RELATED [] synonym: "penis" NARROW [] xref: AAO:0010255 xref: FBbt:00004850 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000091 xref: TAO:0002036 xref: TGMA:0000585 xref: Wikipedia:Intromittent_organ is_a: UBERON:0003135 ! male reproductive organ property_value: curator_notes "this is a broad grouping class connecting a number of different analagous organs by their function. We place the insect aedeagus here rather than penis, although this is somewhat arbitrary given the broadness of the current definition" xsd:string property_value: external_definition "Surface structure that is an external structure of a male organism through which sperm is transferred to a female organism during mating.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002036", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0008812 name: hemipenis def: "One of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands." [Wikipedia:Hemipenis] subset: organ_slim synonym: "hemipenes" RELATED OMO:0003004 [Wikipedia:Hemipenis] xref: SCTID:27265006 xref: Wikipedia:Hemipenis is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ [Term] id: UBERON:0008813 name: helicotrema def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [Wikipedia:Helicotrema] synonym: "apex of cochlea" BROAD [Wikipedia:Cochlea] synonym: "cochlear apex" BROAD [Wikipedia:Cochlea] synonym: "Scarpa's orifice" EXACT [FMA:61275] xref: FMA:61275 xref: NCIT:C32723 xref: SCTID:279775003 xref: UMLS:C0229512 {source="ncithesaurus:Helicotrema"} xref: Wikipedia:Helicotrema is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png" xsd:anyURI [Term] id: UBERON:0008814 name: pharyngeal arch system def: "A transient embryonic complex that comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming, which may include (depending on species) the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear[GO,modified]." [GO:0060037, GOC:dph] synonym: "embryonic pharyngeal complex" EXACT [] synonym: "pharyngeal apparatus" EXACT [] synonym: "pharyngeal arch complex" RELATED [] synonym: "pharyngeal arch region" RELATED [EHDAA2:0000187] synonym: "pharyngeal arches and clefts" RELATED [] synonym: "pharyngeal complex" RELATED [] synonym: "pharyngeal system" EXACT [GO:0060037] xref: EHDAA2:0000187 xref: FMA:293041 xref: NCIT:C34248 xref: UMLS:C1519038 {source="ncithesaurus:Pharyngeal_Apparatus"} is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0009145 ! pharyngeal region of foregut property_value: editor_note "Currently defined in a vertebrate specific manner. The arch system has origins in basal deuterostomes, consider generalizing" xsd:string [Term] id: UBERON:0008815 name: pharyngeal slit def: "An organ formed from the perforation between the point of contact between ectoderm and endoderm in the pharynx. The slits assist in filtering food particles from the water." [http://orcid.org/0000-0002-6601-2165, PMID:23020903] subset: organ_slim synonym: "gill slit" RELATED [] synonym: "pharyngeal perforation" RELATED [PMID:23020903] xref: Wikipedia:Pharyngeal_slit is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0007690 {source="cjm"} ! early pharyngeal endoderm relationship: never_in_taxon NCBITaxon:7742 relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gill_slits.png/280px-Gill_slits.png" xsd:anyURI property_value: editor_note "requires review. Kardong uses the term pharyngeal slit for Chondrichthyans. 'branchial slit' may also be used for amniote structures." xsd:string property_value: taxon_notes "homologous to pharyngeal pouches" xsd:string property_value: taxon_notes "may have been present in deuterostome ancestor[PMID:11961109]" xsd:string property_value: taxon_notes "Some hemichordate species can have as many as 200 gill slits" xsd:string [Term] id: UBERON:0008816 name: embryonic head def: "A head that is part of a embryo." [OBOL:automatic] subset: non_informative xref: CALOHA:TS-0246 xref: FBbt:00000155 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:293011 is_a: UBERON:0000033 ! head relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0008817 name: thymus primordium endoderm def: "An endoderm that is part of a thymus primordium." [OBOL:automatic] is_a: UBERON:0000925 ! endoderm relationship: part_of UBERON:0005562 ! thymus primordium [Term] id: UBERON:0008818 name: superior mediastinum def: "The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind." [Wikipedia:Superior_mediastinum] synonym: "mediastinum superius" RELATED OMO:0003011 [Wikipedia:Superior_mediastinum] synonym: "superior mediastinal part of chest" EXACT [FMA:9827] xref: FMA:9827 xref: NCIT:C33684 xref: SCTID:362687003 xref: UMLS:C0230147 {source="ncithesaurus:Superior_Mediastinum"} xref: Wikipedia:Superior_mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png" xsd:anyURI [Term] id: UBERON:0008819 name: inferior mediastinum def: "Anterior, middle and posterior mediastinum." [Wikipedia:Inferior_mediastinum] synonym: "inferior mediastinal part of chest" EXACT [FMA:9828] xref: FMA:9828 xref: SCTID:243950006 xref: Wikipedia:Inferior_mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0001443 {source="FMA-propagated"} ! chest relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum [Term] id: UBERON:0008820 name: anterior mediastinum def: "The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below." [Wikipedia:Anterior_mediastinum] synonym: "anterior mediastinal part of chest" EXACT [FMA:9838] synonym: "mediastinum anterius" RELATED OMO:0003011 [Wikipedia:Anterior_mediastinum] xref: FMA:9838 xref: NCIT:C32098 xref: SCTID:261048003 xref: UMLS:C0230148 {source="ncithesaurus:Anterior_Mediastinum"} xref: Wikipedia:Anterior_mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png" xsd:anyURI [Term] id: UBERON:0008821 name: middle mediastinum def: "The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents." [Wikipedia:Middle_mediastinum] synonym: "mediastinum medium" RELATED OMO:0003011 [Wikipedia:Middle_mediastinum] synonym: "middle mediastinal part of chest" EXACT [FMA:9839] xref: FMA:9839 xref: NCIT:C33123 xref: SCTID:362688008 xref: UMLS:C0230149 {source="ncithesaurus:Middle_Mediastinum"} xref: Wikipedia:Middle_mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png" xsd:anyURI [Term] id: UBERON:0008822 name: posterior mediastinum def: "The posterior mediastinum is an irregular triangular space running parallel with the vertebral column." [Wikipedia:Posterior_mediastinum] synonym: "mediastinum posterius" RELATED OMO:0003011 [Wikipedia:Posterior_mediastinum] synonym: "posterior mediastinal part of chest" EXACT [FMA:9840] xref: FMA:9840 xref: NCIT:C33368 xref: SCTID:243957009 xref: UMLS:C0230150 {source="ncithesaurus:Posterior_Mediastinum"} xref: Wikipedia:Posterior_mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png" xsd:anyURI [Term] id: UBERON:0008823 name: neural tube derived brain def: "A brain that develops_from a neural tube." [https://github.com/obophenotype/uberon/issues/338, OBOL:automatic] synonym: "vertebrate brain" NARROW [] is_a: UBERON:0000489 {source="ZFA"} ! cavitated compound organ is_a: UBERON:0000955 ! brain relationship: develops_from UBERON:0001049 ! neural tube relationship: part_of UBERON:0000033 {source="FMA"} ! head property_value: editor_note "a reasoner should automatically classify all the vertebrate ontology brain classes here" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/338" xsd:anyURI [Term] id: UBERON:0008824 name: duct of epididymis def: "Any duct branching of of the main epididymis duct." [http://orcid.org/0000-0002-6601-2165] synonym: "epididymal duct" EXACT [MA:0001735] synonym: "epididymis duct" EXACT [FMA:18297] xref: EMAPA:36525 xref: FMA:18297 xref: MA:0001735 xref: NCIT:C32484 xref: SCTID:279623004 xref: UMLS:C0458632 {source="ncithesaurus:Duct_of_the_Epididymis"} is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0001301 {source="FMA"} ! epididymis [Term] id: UBERON:0008826 name: pulmonary surfactant def: "A substance formed by type II alveolar cells composed of surface-active lipoprotein complex (phospholipoprotein)." [Wikipedia:Pulmonary_surfactant] subset: pheno_slim synonym: "alveolar surfactant" EXACT [FMA:62780] synonym: "lung surfactant" EXACT [MA:0002534] synonym: "type II pneumocyte secretion" EXACT [] xref: EMAPA:36551 xref: FMA:62780 xref: MA:0002534 xref: MESH:D011663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13273 xref: UMLS:C0034085 {source="ncithesaurus:Lung_Surfactant"} xref: Wikipedia:Pulmonary_surfactant is_a: UBERON:0006538 ! respiratory system fluid/secretion property_value: function_notes "surfactant" xsd:string [Term] id: UBERON:0008827 name: murine forestomach def: "A distinct rodent non-glandular region of the stomach which is demarcated from the glandular stomach by the limiting ridge (margo plicatus)." [MGI:anna, MP:0010784] subset: pheno_slim synonym: "anterior stomach" RELATED [MGI:anna] synonym: "antrum cardiacum" RELATED OMO:0003011 [MGI:anna] synonym: "forestomach" BROAD [] synonym: "proximal stomach" RELATED [MGI:anna] synonym: "stomach non-glandular region" BROAD [MGI:anna] xref: EMAPA:17627 xref: MA:0001606 xref: NCIT:C77956 xref: UMLS:C0033745 {source="ncithesaurus:Forestomach"} is_a: UBERON:0011954 ! stomach non-glandular region property_value: editor_note "consider merging with stomach non-glandular region" xsd:string property_value: external_definition "Non-glandular portion of the stomach of some mammals that is connected to the esophagus. It is utilized as a holding chamber during digestion for un-digested and partially digested food." xsd:string property_value: external_definition "The mouse stomach contains two well-defined areas, a (nonglandular) forestomach and a glandular stomach, which are separated by the limiting ridge (margo plicatus)[http://ctrgenpath.net/static/atlas/mousehistology/Windows/digestive/forestomach.html]." xsd:string {source="http://ctrgenpath.net/static/atlas/mousehistology/Windows/digestive/forestomach.html"} property_value: taxon_notes "the forestomach accounts for about 60% (rat) and 70% (mouse) of the stomach volume and receives the esophagus at the cardiac antrum; the wall of the forestomach consists of, from inside to outside, stratified squamous epithelium, the lamina propria (epithelium and lamina propria form the mucosa), the muscularis mucosae, the submucosa, the muscularis interna and externa (inner circular and outer longitudinal layers of smooth muscle), and the serosa" xsd:string property_value: taxon_notes "This class is based on the murine structure. Other groups, such as cetaceans, also have a forestomach (which is essentially an enlargement of the esophagus)" xsd:string [Term] id: UBERON:0008828 name: presphenoid bone def: "The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [http://www.thefreedictionary.com/Presphenoid+bone, Wikipedia:Ossification_of_sphenoid#Presphenoid] subset: pheno_slim synonym: "presphenoidal bone" EXACT [] xref: EMAPA:36616 xref: FMA:321632 xref: MA:0001470 xref: SCTID:95949009 xref: Wikipedia:Ossification_of_sphenoid#Presphenoid is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone relationship: part_of UBERON:0003111 {source="ISBN:0073040584"} ! sphenoid region property_value: editor_note "TODO - account for developmental change" xsd:string [Term] id: UBERON:0008829 name: cerebellum external granule cell layer def: "Transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]." [MP:0000874, Wikipedia:Anatomy_of_the_cerebellum#Development] subset: pheno_slim synonym: "external granule layer" BROAD [] synonym: "granule cell layer" BROAD [MP:0000872] synonym: "granule layer" BROAD [MP:0000872] synonym: "outer granular layer of cerebellar cortex" EXACT [BIRNLEX:797] xref: BIRNLEX:797 xref: EMAPA:35216 xref: MA:0000994 xref: UMLS:C0228473 {source="BIRNLEX:797"} xref: UMLS:C1289480 {source="BIRNLEX:797"} xref: Wikipedia:Anatomy_of_the_cerebellum#Development is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex property_value: development_notes "The granule neurons migrate from the exterior layer to form an inner layer known as the internal granule layer. The external granular layer ceases to exist in the mature cerebellum, leaving only granule cells in the internal granule layer[WP]" xsd:string property_value: external_definition "The transient layer of the cerebellar cortex present during development which is composed of the dividing and migrating granule cell[MGI:tc]" xsd:string {source="MGI:tc"} [Term] id: UBERON:0008830 name: cerebellum internal granule cell layer synonym: "inner granular layer of cerebellar cortex" EXACT [BIRNLEX:790] xref: BIRNLEX:790 xref: EMAPA:35219 xref: MA:0000995 xref: NCIT:C49141 xref: UMLS:C0228471 {source="BIRNLEX:790"} xref: UMLS:C1289476 {source="BIRNLEX:790"} xref: UMLS:C1708540 {source="ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum"} is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex [Term] id: UBERON:0008831 name: inner spiral sulcus def: "A concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "internal spiral sulcus" EXACT [MA:0001197] synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html] xref: EMAPA:35438 xref: FMA:77850 xref: MA:0001197 xref: Wikipedia:Sulcus_spiralis_internus is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus [Term] id: UBERON:0008832 name: outer spiral sulcus def: "A concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "external spiral sulcus" EXACT [MA:0001196] synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html] xref: EMAPA:35332 xref: FMA:77851 xref: MA:0001196 xref: Wikipedia:Sulcus_spiralis_externus is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus [Term] id: UBERON:0008833 name: great auricular nerve def: "A nerve arising from the second and third cervical nerves from the cervical plexus and innervating the skin over the parotid gland, the skin of part of the ear, the adjacent portion of the scalp, cheek, and angle of the jaw." [http://medical-dictionary.thefreedictionary.com/great+auricular+nerve, Wikipedia:Great_auricular_nerve] subset: human_reference_atlas synonym: "great auricular" RELATED [Wikipedia:Great_auricular_nerve] synonym: "greater auricular nerve" RELATED [Wikipedia:Great_auricular_nerve] synonym: "nervus auricularis magnus" EXACT OMO:0003011 [Wikipedia:Great_auricular_nerve] xref: FMA:6872 xref: SCTID:181110003 xref: Wikipedia:Great_auricular_nerve is_a: UBERON:0035648 ! nerve innervating pinna relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray805.png" xsd:anyURI [Term] id: UBERON:0008834 name: prostomium def: "The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth." [Wikipedia:Prostomium] synonym: "acron" RELATED [BTO:0004198, Wikipedia:Prostomium] xref: BTO:0004198 xref: Wikipedia:Prostomium is_a: UBERON:0000914 ! organismal segment property_value: function_notes "Often functions like a kind of overlip when the animal is feeding." xsd:string property_value: structure_notes "sometimes bears antennae and eyes" xsd:string [Term] id: UBERON:0008835 name: hepatic diverticulum def: "An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts." [http://www.stembook.org/node/512, MP:MP] subset: pheno_slim synonym: "diverticulum hepaticum" RELATED OMO:0003011 [Wikipedia:Hepatic_diverticulum] synonym: "liver diverticulum" EXACT [XAO:0000101] xref: AAO:0011057 xref: EHDAA2:0000740 xref: EHDAA:1530 xref: NCIT:C34187 xref: UMLS:C1512407 {source="ncithesaurus:Hepatic_Diverticulum"} xref: Wikipedia:Hepatic_diverticulum xref: XAO:0000101 is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum relationship: develops_from UBERON:0003894 {source="EHDAA2"} ! liver primordium relationship: part_of UBERON:0004161 {notes="caudal part", source="EHDAA2"} ! septum transversum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png" xsd:anyURI property_value: development_notes "The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut." xsd:string property_value: taxon_notes "in mice, the hepatic diverticulum forms by E9 and expands into an obvious liver bud by E10" xsd:string [Term] id: UBERON:0008836 name: liver bud xref: BTO:0001642 is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0007499 {source="cjm"} ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum relationship: develops_from UBERON:0008835 {source="http://www.stembook.org/node/512"} ! hepatic diverticulum [Term] id: UBERON:0008837 name: palmar/plantar part of autopod is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 ! autopod region [Term] id: UBERON:0008838 name: metapodial pad def: "A thick, spongy layer of tissue located under the metacarpal and metatarsal joints of the autopod." [ncithesaurus:Footpad] subset: pheno_slim synonym: "foot pad" RELATED [] synonym: "footpad" RELATED [MA:0003010] synonym: "metapodium pad" RELATED [] xref: MA:0003010 xref: NCIT:C92654 is_a: UBERON:0012348 ! autopod pad relationship: part_of UBERON:0009877 ! metapodium region property_value: editor_note "check synonyms - re footpad" xsd:string [Term] id: UBERON:0008839 name: palmar pad def: "An autopod pad that is in the metacarpal region." [https://orcid.org/0000-0002-6601-2165] synonym: "hind foot pad" RELATED [] synonym: "metacarpal foot pad" RELATED [] synonym: "metacarpal pad" RELATED [] synonym: "palmar pads" RELATED OMO:0003004 [EMAPA:18489] xref: EMAPA:18489 is_a: UBERON:0008838 ! metapodial pad is_a: UBERON:0013622 ! manual autopod pad is_a: UBERON:0013777 ! skin of palm of manus relationship: part_of UBERON:0004453 ! metacarpus region property_value: external_ontology_notes "the EMAPA term refers to the plural" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0008840 name: plantar pad def: "An autopod pad that is in the metatarsal region." [https://orcid.org/0000-0002-6601-2165] synonym: "fore foot pad" RELATED [] synonym: "metatarsal foot pad" RELATED [] synonym: "metatarsal pad" RELATED [] synonym: "plantar pads" RELATED OMO:0003004 [EMAPA:18507] xref: EMAPA:18507 is_a: UBERON:0008838 ! metapodial pad is_a: UBERON:0013623 ! pedal autopod pad is_a: UBERON:0013778 ! skin of sole of pes relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0001513 {source="EMAPA"} ! skin of pes property_value: external_definition "The canine metatarsal pad is large and heart-shaped, and functions to cushion the foot. The pad is covered by a naked, densely cornified epidermis, which is usually highly pigmented and is the toughest region of the canine skin. The digital cushion or bulk of the foot pad is composed of a subcutaneous adipose tissue, partitioned by reticular, collagenous and elastic fibres. The subcutis of the canine footpads contains sweat glands embedded in the adipose tissue. The ducts of these glands channel through the thick epidermis of the foot pad. The secretions from these glands function as territorial or trail markers[MURDOCH:1334]." xsd:string {source="MURDOCH:1334"} [Term] id: UBERON:0008841 name: suspensory ligament def: "A ligament that supports a body part, especially an organ." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0008842 name: suspensory ligament of testis def: "The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis." [http://www.medilexicon.com/medicaldictionary.php?t=49790, Wikipedia:Scrotal_ligament] synonym: "scrotal ligament" RELATED [Wikipedia:Gubernaculum] xref: SCTID:279592009 xref: Wikipedia:Scrotal_ligament is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament relationship: part_of UBERON:0004876 {source="Obol"} ! urogenital fold [Term] id: UBERON:0008843 name: gubernaculum testis def: "The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies." [BTO:0002813] synonym: "gubernaculum" BROAD [MA:0003248] synonym: "Hunter's gubernaculum" RELATED [BTO:0002813] synonym: "male gubernaculum" EXACT [] xref: BTO:0002813 xref: EMAPA:19089 xref: FMA:20421 xref: MA:0003248 xref: SCTID:299983007 is_a: UBERON:0004346 ! gubernaculum (male or female) relationship: part_of UBERON:0000079 ! male reproductive system property_value: development_notes "The upper part of the gubernaculum degenerates; The lower part persists as the gubernaculum testis ('scrotal ligament'). This ligament secures the testis to the most inferior portion of the scrotum, tethering it in place and limiting the degree to which the testis can move within the scrotum[WP]" xsd:string [Term] id: UBERON:0008844 name: gubernaculum (female) def: "A gubernaculum that is part of a female reproductive system." [OBOL:automatic] comment: The upper part of the gubernaculum, together with the ovarian artery and vein form the suspensory ligament of the ovary,[1] which suspends the ovary from the pelvic wall.; The lower gubernaculum has two vestigial remnants in females, the ovarian ligament and the round ligament of the uterus (ligamentum teres uteri) which respectively serve to support the ovaries and uterus in the pelvis synonym: "female gubernaculum" EXACT [] synonym: "gubernaculum ovarii" RELATED [] is_a: UBERON:0004346 ! gubernaculum (male or female) relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0008845 name: nonskeletal ligament def: "A ligament that does not connect two skeletal elements." [http://orcid.org/0000-0002-6601-2165] synonym: "fibrous ligament" RELATED [Wikipedia:Ligament] synonym: "non-skeletal ligament" EXACT [] xref: FMA:25625 xref: MA:0003004 xref: SCTID:410746001 is_a: UBERON:0000211 {source="cjm"} ! ligament property_value: external_definition "Ligament organ that primarily consists of dense connective tissue aggregated into fasciculi which may be admixed with smooth muscle. Examples: ligament of liver, ovarian ligament[FMA:25625]." xsd:string {source="FMA:25625"} property_value: external_ontology_notes "this class is used more generally than the FMA class, to include for example folds of mesentery such as the broad ligament of the uterus." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0008846 name: skeletal ligament def: "Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165] synonym: "articular larua" EXACT [Wikipedia:Ligament] synonym: "articular ligament" EXACT [Wikipedia:Ligament] synonym: "ligament" BROAD [VSAO:0000072, ZFA:0001675] synonym: "true ligament" EXACT [Wikipedia:Ligament] xref: AAO:0010444 xref: AEO:0000090 xref: CALOHA:TS-2146 xref: EHDAA2:0003232 xref: EV:0100144 xref: FMA:25624 xref: GAID:118 xref: MA:0003005 xref: SCTID:410744003 xref: VSAO:0000072 xref: Wikipedia:Ligament#Articular_ligaments is_a: UBERON:0000211 ! ligament relationship: part_of UBERON:0001434 ! skeletal system property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg" xsd:anyURI property_value: editor_note "logical definition deliberately made strict to avoid classifying MA:spiral ligament as both nonskeletal and skeletal. see https://github.com/obophenotype/mouse-anatomy-ontology/issues/71" xsd:string property_value: external_definition "Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000072", ontology="VSAO", source="PSPUB:0000170"} property_value: external_definition "Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament[FMA:25624]." xsd:string {source="FMA:25624"} [Term] id: UBERON:0008847 name: ovarian ligament def: "A fibrous ligament that connects the ovary to the lateral surface of the uterus." [Wikipedia:Ovarian_ligament] comment: The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium subset: human_reference_atlas synonym: "ligament of ovary" EXACT [FMA:55422] synonym: "ligamentum ovarii proprium" EXACT OMO:0003011 [FMA:TA] synonym: "proper ovarian ligament" EXACT [FMA:55422] xref: FMA:55422 xref: SCTID:279915004 xref: Wikipedia:Ovarian_ligament is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament relationship: develops_from UBERON:0004346 {notes="lower gubernaculum", source="Wikipedia"} ! gubernaculum (male or female) relationship: part_of UBERON:0000474 ! female reproductive system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0008848 name: cranial suspensory ligament def: "Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:30068 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ property_value: editor_note "TODO - check - add cranial ovarian susp ligaments" xsd:string [Term] id: UBERON:0008851 name: ectoplacental cavity def: "Closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals." [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity, MP:0011207] subset: pheno_slim synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] synonym: "epamniotic cavity" RELATED [MP:0011207] xref: EMAPA:16080 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004364 ! ectoplacental cone [Term] id: UBERON:0008852 name: visceral yolk sac def: "Extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells." [MP:0001718] subset: pheno_slim synonym: "secondary yolk sac" EXACT [MP:0001718] synonym: "umbilical vesicle" EXACT [MP:0001718] synonym: "vitelline sac" EXACT [MP:0001718] synonym: "yolk sac" BROAD [MP:0001718] xref: FMA:296715 is_a: UBERON:0001040 ! yolk sac [Term] id: UBERON:0008853 name: parietal yolk sac def: "Tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity." [MP:0011203, PMID:1150659, PMID:21123814] subset: pheno_slim synonym: "primary yolk sac" EXACT [MP:0011203] xref: EHDAA2:0003237 xref: FMA:296713 is_a: UBERON:0001040 ! yolk sac [Term] id: UBERON:0008854 name: root of molar tooth def: "The part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165] subset: pheno_slim synonym: "molar root" EXACT [MP:0011166] synonym: "molar tooth root" EXACT [FMA:85302] xref: EMAPA:37948 {source="MA:th"} xref: FMA:85302 is_a: UBERON:0003677 ! tooth root relationship: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0008855 name: placenta metrial gland def: "A group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species." [MP:0010777] subset: organ_slim subset: pheno_slim xref: MA:0001723 is_a: UBERON:0005398 ! female reproductive gland relationship: never_in_taxon NCBITaxon:9443 {source="MP:0010777"} relationship: part_of UBERON:0002450 {source="MP"} ! decidua [Term] id: UBERON:0008856 name: stomach muscularis externa def: "The smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines." [MP:0010779] subset: pheno_slim synonym: "gastric muscularis" EXACT [FMA:14909] synonym: "muscle layer of stomach" EXACT [FMA:14909] synonym: "muscularis externa of stomach" EXACT [FMA:14909] synonym: "tunica muscularis (gaster)" EXACT [FMA:14909] synonym: "tunica muscularis gastris" EXACT [] xref: FMA:14909 xref: SCTID:362132003 is_a: UBERON:0018261 ! muscular coat of digestive tract is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: part_of UBERON:0004222 {source="MA-abduced"} ! stomach smooth muscle property_value: structure_notes "the muscularis externa in the stomach differs from that of other GI organs in that it has three layers of smooth muscle instead of two" xsd:string {source="WP"} [Term] id: UBERON:0008857 name: stomach smooth muscle circular layer def: "The middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum." [MP:0010780] subset: pheno_slim synonym: "circular layer of gastric muscularis" EXACT [FMA:14911] synonym: "circular muscle layer of stomach" EXACT [FMA:14911] synonym: "middle circular muscle layer of stomach" EXACT [] synonym: "stratum circulare (tunica muscularis)(gaster)" EXACT [FMA:14911] synonym: "stratum circulare gastris" EXACT [] synonym: "stratum circulare tunicae muscularis gastricae" EXACT OMO:0003011 [FMA:14911, FMA:TA] xref: FMA:14911 xref: MA:0001628 xref: SCTID:2746007 is_a: UBERON:0012368 ! circular muscle layer of muscular coat relationship: part_of UBERON:0008856 {source="FMA"} ! stomach muscularis externa property_value: external_ontology_notes "FMA and MP disagree as to whether the circular layer is middle or innermost" xsd:string {external_ontology="FMA"} property_value: function_notes "This layer wraps in a circular orientation around the pylorus, and is held in a constricted state normally. The normal constriction of this muscle is what creates the pyloric sphincter, which controls the movement of chyme into the duodenum. This layer is concentric to the longitudinal axis of the stomach. (note: chyme is a thick and acidic mixture of acidic digestive fluids and partially digested food, which moves from the stomach to the small intestine as digestion moves along the digestive tract.)" xsd:string [Term] id: UBERON:0008858 name: pyloric canal def: "The short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter." [MP:0010791, Wikipedia:Pyloric_canal] subset: pheno_slim synonym: "canalis pyloricus" EXACT [Wikipedia:Pyloric_canal] synonym: "canalis pyloricus" RELATED OMO:0003011 [Wikipedia:Pyloric_canal] xref: EMAPA:37944 {source="MA:th"} xref: FMA:14580 xref: SCTID:245417002 xref: Wikipedia:Pyloric_canal is_a: UBERON:0009870 {source="FMA"} ! zone of stomach relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg" xsd:anyURI [Term] id: UBERON:0008859 name: cardiac gastric gland def: "A gastric gland in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it[MP]." [MP:0010795, Wikipedia:Cardiac_glands] subset: organ_slim subset: pheno_slim synonym: "cardiac gland" RELATED [FMA:14920] synonym: "gardiac gland" EXACT [ISBN:0073040584] synonym: "gastric cardiac gland" EXACT [FMA:14920] synonym: "gastric cardiac mucuous gland" EXACT [] synonym: "gastric gland of cardia" EXACT [FMA:14920] synonym: "glandula cardiaca (gaster)" EXACT [FMA:14920] xref: EMAPA:37459 {source="MA:th"} xref: FMA:14920 xref: SCTID:8894005 xref: Wikipedia:Cardiac_glands is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 {source="MP"} ! mucous gland relationship: part_of UBERON:0004996 {source="FMA"} ! mucosa of cardia of stomach property_value: external_definition "The cardiac glands of the stomach secrete primarily mucus. They are few in number and occur close to the cardiac orifice where the esophagus joins the stomach. In general, they are more shallow than those in the other parts of the stomach. They are of two kinds: (1) simple tubular glands resembling those of the pyloric end of the stomach, but with short ducts. (2) compound racemose glands resembling the duodenal glands. The cardiac gland is both innervated by the parasympathetic and symapthetic nerve fibres of the autonomic nervous system[Wikipedia:Cardiac_glands]." xsd:string {source="Wikipedia:Cardiac_glands"} property_value: external_ontology_notes "Kardong places this in the glandular epithelium, FMA more generally in the mucosa" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0008860 name: intermediate gastric gland def: "Any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach." [MP:0010796] subset: pheno_slim is_a: UBERON:0010038 ! fundic gastric gland property_value: editor_note "todo, check this class" xsd:string [Term] id: UBERON:0008861 name: pyloric gastric gland def: "The gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [MP:0010797, Wikipedia:Pyloric_gland] subset: pheno_slim synonym: "glandula pylorica" EXACT [FMA:14922] synonym: "pyloric antrum gland" EXACT [OBOL:automatic] synonym: "pyloric gland" EXACT [FMA:14922] synonym: "pyloric mucuous gland" EXACT [] xref: EMAPA:27211 xref: FMA:14922 xref: NCIT:C33431 xref: SCTID:70710007 xref: UMLS:C0227239 {source="ncithesaurus:Pyloric_Gland"} xref: Wikipedia:Pyloric_gland is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 {source="MP"} ! mucous gland relationship: part_of UBERON:0004998 ! mucosa of pylorus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png" xsd:anyURI property_value: editor_note "check relationship to pylorus vs antrum" xsd:string [Term] id: UBERON:0008862 name: stomach smooth muscle inner oblique layer def: "The innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food." [MP:0010804] comment: The only layer of the three which is not seen in other parts of the digestive system[WP]. subset: pheno_slim synonym: "inner oblique muscle layer of stomach" EXACT [] synonym: "oblique fiber layer of gastric muscularis" EXACT [FMA:14912] synonym: "oblique muscle layer of stomach" EXACT [FMA:14912] xref: EMAPA:37965 {source="MA:th"} xref: FMA:14912 is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: part_of UBERON:0008856 {source="MP"} ! stomach muscularis externa property_value: external_ontology_notes "FMA and MP disagree as to whether the oblique layer is middle or innermost. WP seems to agree that the oblique is inner" xsd:string {external_ontology="FMA"} property_value: function_notes "This layer is responsible for creating the motion that churns and physically breaks down the food. It is the only layer of the three which is not seen in other parts of the digestive system. The antrum has thicker skin cells in its walls and performs more forceful contractions than the fundus" xsd:string [Term] id: UBERON:0008863 name: stomach smooth muscle outer longitudinal layer def: "The most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum." [http://medimagery.com/anatomy/stomach/layers-of-the-stomach.html, MP:0010805] subset: pheno_slim synonym: "longitudinal layer of gastric muscularis" EXACT [FMA:14910] synonym: "muscle layer 1 of stomach" EXACT [] synonym: "outer longitudinal muscle layer of stomach" EXACT [] synonym: "stratum longitudinale (tunica muscularis)(gaster)" EXACT OMO:0003011 [FMA:14910] synonym: "stratum longitudinale tunicae muscularis gastricae" EXACT OMO:0003011 [FMA:14910, FMA:TA] xref: EMAPA:37966 {source="MA:th"} xref: FMA:14910 is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: part_of UBERON:0008856 ! stomach muscularis externa [Term] id: UBERON:0008866 name: enamel knot def: "A transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps." [MP:0010864] subset: pheno_slim xref: BTO:0005791 is_a: UBERON:0034922 ! cell cluster relationship: part_of UBERON:0003843 ! dental epithelium [Term] id: UBERON:0008867 name: trabecular network of bone def: "The network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force." [MP:0010867] subset: pheno_slim synonym: "bone trabecula" RELATED [MP:0010867] synonym: "bone trabeculae" RELATED [MP:0010867] xref: NCIT:C82999 xref: UMLS:C2826619 {source="ncithesaurus:Bone_Trabeculae"} is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002483 {source="MP"} ! trabecular bone tissue property_value: editor_note "consider revision - we have 3 classes, the tissue itself, the network, and the spaces." xsd:string [Term] id: UBERON:0008870 name: pulmonary alveolar parenchyma def: "The distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages." [MP:0010901] subset: human_reference_atlas subset: pheno_slim xref: EMAPA:37942 {source="MA:th"} is_a: UBERON:0008946 ! lung parenchyma relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002299 ! alveolus of lung relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0008873 name: alveolar pore def: "The openings in the alveolar septum that permit air flow between adjacent alveoli." [MP:0010904] subset: pheno_slim xref: EMAPA:37391 {source="MA:th"} is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008874 name: pulmonary acinus def: "The largest lung subunit in which all airways participate in gas exchange, and it is composed of the parenchyma of the respiratory bronchioles, alveolar ducts, and alveoli." [MP:0010911, PMID:2014492, PMID:3382030, Wikipedia:Acinus#The_Lungs] subset: human_reference_atlas subset: pheno_slim synonym: "acinus pulmonaris" EXACT OMO:0003011 [FMA:7313, FMA:TA] synonym: "arbor alveolaris" EXACT OMO:0003011 [FMA:7313, FMA:TA] synonym: "pulmonary acini" EXACT OMO:0003004 [PMID:37025383] xref: EMAPA:37941 {source="MA:th"} xref: FMA:7313 xref: NCIT:C33426 xref: SCTID:361365004 xref: UMLS:C0225696 {source="ncithesaurus:Pulmonary_Acinus"} xref: Wikipedia:Acinus#The_Lungs is_a: UBERON:0001062 ! anatomical entity relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0010369 ! secondary pulmonary lobule relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0008876 name: hypodermis skeletal muscle layer alt_id: UBERON:0010934 def: "Any skeletal muscle organ in the hypodermis / superficial fascia." [ISBN:0123813611, MP:0011157] subset: pheno_slim synonym: "hypodermal muscle layer" EXACT [MP:0011157] synonym: "hypodermis muscle layer" EXACT [MP:0011157] synonym: "panniculus carnosus" NARROW [MP:0011157] synonym: "superficial fascia muscular layer" EXACT [] xref: EMAPA:18188 xref: MA:0003140 is_a: UBERON:0004253 ! skin muscle is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0002072 ! hypodermis property_value: editor_note "We follow MP and treat this as part of the hypodermis, although some sources may consider the hypodermis to be superficial to this" xsd:string [Term] id: UBERON:0008877 name: epidermal-dermal junction def: "The multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction." [MP:0011159] subset: pheno_slim synonym: "dermal-epidermal junction" EXACT [FMA:70963] synonym: "dermo-epidermal junction" EXACT [] synonym: "dermoepidermal junction" EXACT [FMA:70963] synonym: "epidermal dermol junction" EXACT [] xref: EMAPA:37866 {source="MA:th"} xref: FMA:70963 xref: NCIT:C62356 xref: SCTID:51025007 is_a: UBERON:0005769 ! basement membrane of epithelium relationship: part_of UBERON:0000014 {source="MP"} ! zone of skin [Term] id: UBERON:0008878 name: palmar part of manus subset: pheno_slim synonym: "front of hand" EXACT [FMA:24920] synonym: "palm" EXACT [FMA:24920] synonym: "palm of hand" EXACT [FMA:24920] synonym: "palmar region" EXACT [FMA:24920] synonym: "regio palmaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:24920 xref: galen:Palm xref: NCIT:C33252 xref: UMLS:C0931849 {source="ncithesaurus:Palmar_Region"} is_a: UBERON:0005451 {source="FMA"} ! segment of manus is_a: UBERON:0008837 ! palmar/plantar part of autopod [Term] id: UBERON:0008879 name: ligament of pinna synonym: "auricular ligament" EXACT [MA:0001228] synonym: "ligament of auricle" EXACT [FMA:61035] synonym: "pinna ligament" EXACT [FMA:61035] xref: EMAPA:37434 {source="MA:th"} xref: FMA:61035 xref: MA:0001228 xref: SCTID:362548009 is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament relationship: part_of UBERON:0001757 {source="MA"} ! pinna property_value: editor_note "subclasses (anterior, superior, posterior) can be added on request" xsd:string [Term] id: UBERON:0008880 name: annelid pygidium def: "Rearmost segment of annelid worms." [Wikipedia:Annelid#Segmentation] synonym: "periproct" BROAD [Wikipedia:Periproct] synonym: "pygidium" RELATED [Wikipedia:Annelid#Segmentation] xref: Wikipedia:Periproct is_a: UBERON:0000914 ! organismal segment [Term] id: UBERON:0008881 name: rostral migratory stream def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb." [BIRNLEX:1702, PMID:12453055] subset: pheno_slim synonym: "RMS" RELATED OMO:0003000 [BTO:0003412] synonym: "rostral migratory pathway" RELATED [Wikipedia:Rostral_migratory_stream] xref: BIRNLEX:1702 xref: BTO:0003412 xref: DHBA:10556 xref: PBA:128012584 xref: Wikipedia:Rostral_migratory_stream is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon property_value: external_definition "The rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP]" xsd:string {source="Wikipedia:Rostral_migratory_stream"} property_value: external_definition "The transient structure formed by neurons migrating from the subventricular zone into the olfactory bulb[MP:0004279]s" xsd:string {source="MP:0004279"} property_value: taxon_notes "In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)" xsd:string {source="BTO"} [Term] id: UBERON:0008882 name: spinal cord commissure def: "The nerve fiber tracts that span the midline of the spinal cord." [MP:0009694] subset: pheno_slim xref: EMAPA:37955 {source="MA:th"} is_a: UBERON:0001020 ! nervous system commissure is_a: UBERON:0007699 ! tract of spinal cord [Term] id: UBERON:0008883 name: osteoid def: "Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000046] subset: pheno_slim synonym: "osteoid tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pre-bone" EXACT [PSPUB:0000170] synonym: "prebone" EXACT [VSAO:curator] synonym: "prebone tissue" EXACT [FMA:66830, MP:0002113] xref: EMAPA:37923 {source="MA:th"} xref: FMA:66830 xref: galen:Osteoid xref: NCIT:C33228 xref: SCTID:39365008 xref: UMLS:C0682561 {source="ncithesaurus:Osteoid"} xref: VSAO:0000046 xref: Wikipedia:Osteoid xref: XAO:0004035 is_a: UBERON:0002481 {source="VSAO"} ! bone tissue property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/9c/Active_osteoblasts.jpg" xsd:anyURI property_value: external_definition "Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000046", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: external_definition "Newly formed organic bone matrix secreted by osteoblasts, that exists prior to calcification; it is comprised mainly of type I collagen fibers, chondroitin sulfate and osteocalci[ISBN:0-683-40008-8]n" xsd:string {reference="ISBN:0-683-40008-8", source="MP:0010924"} property_value: external_ontology_notes "Note that in VSAO this was classified both as tissue and acellular extracellular matrix. Consider also the AEO class 'bone condensation'. is_a intercellular matrix in FMA." xsd:string {external_ontology="VSAO"} [Term] id: UBERON:0008884 name: left putamen def: "A putamen that is part of a left cerebral hemisphere." [OBOL:automatic] xref: FMA:72829 xref: HBA:4288 is_a: UBERON:0001874 ! putamen relationship: part_of UBERON:0002812 ! left cerebral hemisphere property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0008885 name: right putamen def: "A putamen that is part of a right cerebral hemisphere." [OBOL:automatic] xref: FMA:72828 xref: HBA:4289 is_a: UBERON:0001874 ! putamen relationship: part_of UBERON:0002813 ! right cerebral hemisphere property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0008886 name: pulmonary vascular system def: "The part of the cardiovascular system consisting of all pulmonary arteries and all pulmonary veins." [ISBN:0073040584, Wikipedia:Pulmonary_circulation] subset: human_reference_atlas synonym: "pulmonary circulatory system" EXACT [FMA:45621] synonym: "pulmonary system" EXACT [ISBN:0073040584] xref: FMA:45621 xref: Wikipedia:Pulmonary_circulation is_a: UBERON:0007798 {source="Obol"} ! vascular system relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs.[FMA]" xsd:string {ontology="FMA", source="FMA:45621"} [Term] id: UBERON:0008887 name: rectal venous plexus def: "The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus." [Wikipedia:Rectal_venous_plexus] synonym: "haemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] synonym: "hemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] synonym: "plexus haemorrhoidalis" RELATED OMO:0003011 [Wikipedia:Rectal_venous_plexus] synonym: "plexus venosus rectalis" RELATED OMO:0003011 [Wikipedia:Rectal_venous_plexus] xref: FMA:18933 xref: NCIT:C32728 xref: SCTID:303051005 xref: UMLS:C0226766 {source="ncithesaurus:Hemorrhoidal_Plexus"} xref: Wikipedia:Rectal_venous_plexus is_a: UBERON:0001593 {source="FMA"} ! venous plexus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray587.png" xsd:anyURI [Term] id: UBERON:0008888 name: vesical venous plexus def: "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins." [Wikipedia:Vesical_venous_plexus] synonym: "plexus venosus vesicalis" RELATED OMO:0003011 [Wikipedia:Vesical_venous_plexus] xref: FMA:18934 xref: SCTID:31510008 xref: Wikipedia:Vesical_venous_plexus is_a: UBERON:0001593 {source="FMA"} ! venous plexus is_a: UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0002355 ! pelvic region of trunk property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI [Term] id: UBERON:0008889 name: uterine venous plexus def: "The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein." [Wikipedia:Uterine_venous_plexus] subset: human_reference_atlas synonym: "plexus venosus uterinus" RELATED OMO:0003011 [Wikipedia:Uterine_venous_plexus] synonym: "uterine plexus" RELATED [Wikipedia:Uterine_venous_plexus] xref: FMA:29712 xref: SCTID:294553007 xref: Wikipedia:Uterine_venous_plexus is_a: UBERON:0001593 {source="FMA"} ! venous plexus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png" xsd:anyURI [Term] id: UBERON:0008891 name: external gill def: "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes[BTO]." [BTO:0004689, Wikipedia:External_gills] xref: AAO:0010174 xref: BTO:0004689 xref: Wikipedia:External_gills xref: XAO:0000120 is_a: UBERON:0002535 {source="BTO"} ! gill is_a: UBERON:0003102 {source="XAO"} ! surface structure property_value: external_definition "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes. Instead, the respiratory organs are set on a frill of stalks protruding from the sides of an animals head. This type of gill is most commonly observed on the aquatic larva of most species of salamanders, lungfish, and bichirs (which have only one large pair), and are retained by neotenic adult salamanders and some species of adult lungfish. They are present on non-transforming salamander species such as the mudpuppy, as well as most members of the Proteidae and Sirenidae families, which naturally never metamorphose into an air-breathing form. The embryos of frogs and caecilians also develop external gills at some point in their development, though these are either resorbed before or disappear shortly after hatching. Fossils of the distant relatives of modern amphibians, such as Branchiosaurus and Apateon, also show evidence of external gills. The external gills commonly consist of a single stalk (rami) protruding from a gill arch behind the head of the animal, above an associated gill slit. The stalk usually contains muscle tissue, and may be moved by the animal as a free appendage, in order to stir up stagnant water. The stalk is lined by many thinly walled filaments (fimbriae), containing the majority of blood vessels used in gas exchange. Animals usually have one external gill originating on each gill arch (except the hyoid), which leads to there being three pairs of external gills in salamanders, and four in the gilled larvae of lungfish[Wikipedia:External_gills]." xsd:string {source="Wikipedia:External_gills"} [Term] id: UBERON:0008892 name: internal gill xref: AAO:0010176 is_a: UBERON:0002535 {source="AAO"} ! gill [Term] id: UBERON:0008894 name: pharyngeal gill precursor def: "A primordium or bud that develops into a gill." [http://orcid.org/0000-0002-6601-2165] synonym: "external gill anlage" RELATED [XAO:0000448] synonym: "gill primordium" EXACT [XAO:0000448] synonym: "internal gill bud" EXACT [ZFA:0001107] synonym: "internal gill buds" RELATED OMO:0003004 [ZFA:0001107] xref: TAO:0001107 xref: XAO:0000448 xref: ZFA:0001107 is_a: UBERON:0001048 {source="XAO"} ! primordium relationship: develops_from UBERON:0003114 {source="XAO"} ! pharyngeal arch 3 relationship: develops_from UBERON:0003115 {source="XAO"} ! pharyngeal arch 4 relationship: develops_from UBERON:0004117 {source="ZFA"} ! pharyngeal pouch [Term] id: UBERON:0008895 name: splanchnocranium def: "Subdivision of endoskeleton derived from pharyngeal arches." [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584, Wikipedia:Facial_skeleton] subset: human_reference_atlas synonym: "branchial arch skeleton" RELATED [] synonym: "gill arch skeleton" RELATED [] synonym: "pharyngeal arch" RELATED INCONSISTENT [VSAO:0000149] synonym: "pharyngeal arch skeleton" RELATED [ZFA:0001216] synonym: "pharyngeal endoskeleton" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pharyngeal skeleton" RELATED [ZFA:0001216] synonym: "visceral cranium" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "visceral skeletal system" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "visceral skeleton" RELATED [UBERONREF:0000007] synonym: "viscerocranium" EXACT INCONSISTENT [VHOG:0000315, Wikipedia:Viscerocranium, ZFA:0001216] xref: AAO:0010157 xref: TAO:0001216 xref: VHOG:0000315 xref: VSAO:0000149 xref: Wikipedia:Facial_skeleton xref: XAO:0003176 xref: ZFA:0001216 is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system relationship: develops_from UBERON:0002539 {source="https://github.com/obophenotype/uberon/issues/83"} ! pharyngeal arch relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg" xsd:anyURI property_value: external_definition "Anatomical cluster that is part of the cranium and consists of the jaws, hyoid and branchial arches.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001216", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Anatomical cluster that is part of the cranium and consists of the jaws, hyoid, and branchial arches.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010157", ontology="AAO", source="AAO:EJS"} property_value: external_definition "The part of the skull derived from the embryonic pharyngeal arches. [Biology_Online][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000315", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_ontology_notes "many sources define this as the part of the endoskeletal that is from pharyngeal arches - this would make it part-disjoint from dermatocranium. However, there are many bones in AOs that have part-paths to both" xsd:string property_value: external_ontology_notes "VSAO labels this term 'pharyngeal arch' (2012-06-01) - however, it clearly means pharyngeal arch skeleton." xsd:string {external_ontology="VSAO"} property_value: homology_notes "The skull of ancestral tetrapods has the three basic components that we have been considering: (1) chondrocranium, (2) splanchnocranium, and (3) dermatocranium (reference 1); Each part of the skull arises from a separate phylogenetic source. The most ancient part is the splanchnocranium (visceral cranium), which first arose to support pharyngeal slits in protochordates (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000315", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.242, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.235", source="http://bgee.unil.ch/"} [Term] id: UBERON:0008896 name: post-hyoid pharyngeal arch def: "A pharyngeal arch that is posterior to the hyoid arch. i.e. any pharyngeal arch with a number 3 or higher." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim synonym: "branchial arch" EXACT [ZFA:0001613] synonym: "branchial arches" EXACT OMO:0003004 [ZFA:0001613] synonym: "branchial bar" EXACT [ZFA:0001613] synonym: "branchial bars" EXACT OMO:0003004 [ZFA:0001613] synonym: "gill arch" EXACT [ZFA:0001613] synonym: "gill arches 1-5" EXACT [ZFA:0001613] synonym: "gill bar" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "pharyngeal arch 3-7" EXACT [ZFA:0001613] synonym: "visceral arches 3-7" EXACT [ZFA:0001613] xref: AAO:0010362 xref: BTO:0002152 xref: EFO:0003694 xref: TAO:0001597 xref: XAO:0000099 xref: ZFA:0001613 is_a: UBERON:0002539 ! pharyngeal arch property_value: external_definition "Posterior-most stream of cranial neural crest, which sub-divides during migration.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010362", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0008897 name: fin def: "An external projection of an aquatic animal as a fish used in propelling or guiding the body[BTO]." [BTO:0004649, Wikipedia:Fin] subset: efo_slim synonym: "fins" RELATED OMO:0003004 [ZFA:0000108] xref: AAO:0010374 xref: AEO:0001004 xref: BTO:0004649 xref: EFO:0000875 xref: MAT:0000087 xref: MESH:D058500 xref: MIAA:0000087 xref: SCTID:73003005 xref: TAO:0000108 xref: VSAO:0000099 xref: Wikipedia:Fin xref: XAO:0000002 xref: ZFA:0000108 is_a: UBERON:0000026 ! appendage relationship: never_in_taxon NCBITaxon:314146 relationship: never_in_taxon NCBITaxon:8782 property_value: external_definition "Surface structure involved in locomotion.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000108", ontology="TAO", source="TAO:wd"} property_value: external_definition "Surface structure involved in locomotion.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000099", ontology="VSAO", source="TAO:curator"} property_value: taxon_notes "This class groups together various structures that may have arisen through convergent evolution, including, for example, the dorsal fin of a cetacean" xsd:string [Term] id: UBERON:0008902 name: lateral recess of third ventricle def: "Lateral protrusion of the third ventricle." [ZFIN:curator] synonym: "lateral recess" BROAD OMO:0003004 [ZFA:0000231] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] synonym: "lateral recesses" RELATED OMO:0003004 [ZFA:0000231] xref: TAO:0000231 xref: ZFA:0000231 is_a: UBERON:0000464 {source="ZFA"} ! anatomical space relationship: part_of UBERON:0002286 {source="ZFA"} ! third ventricle [Term] id: UBERON:0008904 name: neuromast def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements." [ZFIN:ZDB-PUB-961014-576] subset: efo_slim synonym: "lateral line neuromast" EXACT [ZFA:0000243] synonym: "lateral line organ" BROAD [ZFA:0000243] synonym: "neuromast organ" EXACT [PHENOSCAPE:wd] synonym: "neuromasts" EXACT OMO:0003004 [ZFA:0000243] xref: AAO:0001004 xref: BTO:0006219 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003513 xref: TAO:0000243 xref: ZFA:0000243 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0035555 ! lateral line sense organ relationship: develops_from UBERON:0009128 {source="DOI:10.1038/ncomms1502"} ! lateral line placode relationship: part_of UBERON:0010202 ! lateral line relationship: transformation_of UBERON:2005227 {source="ZFA"} ! protoneuromast property_value: axiom_lost_from_external_ontology "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO"} property_value: axiom_lost_from_external_ontology "relationship loss: subclass lateral line receptor (AAO:0010705)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO"} property_value: external_definition "Type of mechanoreceptive organ of the lateral line which are arranged in lines on the body surface. These organs are constituted by hair cells and supporting cells and it is located in the epidermis with its hair cells exposed to the surface. Absent in some caecilians. These receptors receive afferent and efferent innervations.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO", source="AAO:EJS"} property_value: external_definition "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000243", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0008906 name: lateral line nerve def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] synonym: "lateral line nerves" EXACT OMO:0003004 [ZFA:0001479] xref: AAO:0010077 xref: TAO:0001479 xref: ZFA:0001479 is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0009128 {source="NCBIBook:NBK53175"} ! lateral line placode relationship: part_of UBERON:0002540 ! lateral line system property_value: axiom_lost_from_external_ontology "relationship loss: innervates lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"} property_value: axiom_lost_from_external_ontology "relationship type change: part_of_proxy lateral line system (AAO:0000975) CHANGED TO: part_of lateral line system (UBERON:0002540)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"} property_value: external_definition "Any of the sensory nerves that innervate mechano- and electroreceptors of the lateral line system. The lateral line nerves may be separated in two components, anterior and posterior, in relation to the position of its roots with respect to the otic capsule. These nerves develop from lateral line placodes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO", source="AAO:SIQ"} [Term] id: UBERON:0008907 name: dermal bone def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/267, VSAO:0000130] synonym: "dermal bones" RELATED OMO:0003004 [ZFA:0001590] xref: AAO:0010769 xref: TAO:0001590 xref: VSAO:0000130 xref: Wikipedia:Dermal_bone xref: XAO:0004015 xref: ZFA:0001590 is_a: UBERON:0004756 {source="wd"} ! dermal skeletal element is_a: UBERON:0007842 {source="VSAO"} ! membrane bone relationship: part_of UBERON:0010364 {source="VSAO"} ! dermal skeleton property_value: external_definition "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001590", ontology="TAO", source="TAO:wd"} property_value: external_ontology_notes "other AOs are not yet in sync with this classification" xsd:string [Term] id: UBERON:0008909 name: perichordal bone def: "Bone element that is adjacent to the notochord." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000307] synonym: "perichordal bone" RELATED [ZFA:0001629] synonym: "perichordal bones" EXACT OMO:0003004 [ZFA:0001629] xref: AAO:0010777 xref: TAO:0001639 xref: VSAO:0000307 xref: ZFA:0001629 is_a: UBERON:0012075 {notes="not in VSAO", source="ZFA"} ! replacement bone property_value: editor_note "We go with the latest VSAO in making this a subtype of bone, and add a logical definition based on the textual definition in VSAO. We also include the subtyping under 'replacement bone', for consistency with ZFA" xsd:string property_value: external_definition "Replacement bone that forms within the connective tissue surrounding the notochord.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001639", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0008911 name: chondral bone def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [https://github.com/obophenotype/uberon/issues/139, zfin:curator] xref: AAO:0010774 xref: ZFA:0001693 is_a: UBERON:0012075 {source="ZFA"} ! replacement bone property_value: external_ontology_notes "This class was introduced to be consistent with the ZFA hierarchy. The term was never introduced into VSAO." xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0008913 name: perichondral bone def: "Bone element that is located on the surface of a cartilage element." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000308] comment: include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class synonym: "perichondral bone" RELATED [ZFA:0001630] synonym: "perichondral bones" EXACT OMO:0003004 [ZFA:0001630] xref: AAO:0010779 xref: TAO:0001638 xref: VSAO:0000308 xref: ZFA:0001630 is_a: UBERON:0007842 {source="VSAO"} ! membrane bone relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium property_value: external_definition "Replacement bone that forms within the connective tissue surrounding cartilage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001638", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0008915 name: pore def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:curator] xref: AAO:0010441 xref: NCIT:C70672 xref: TAO:0001791 xref: UMLS:C1325742 {source="ncithesaurus:Pore"} xref: ZFA:0005449 is_a: UBERON:0000464 {source="ZFA"} ! anatomical space [Term] id: UBERON:0008917 name: ampullary organ def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd] subset: organ_slim synonym: "ampullary electroreceptor" EXACT [] synonym: "ampullary electroreceptor organ" EXACT [TAO:0002104] synonym: "ampullary receptor" BROAD [] synonym: "electrosensory ampullary organ" EXACT [] xref: AAO:0001006 xref: TAO:0002104 is_a: UBERON:0003103 {source="TAO"} ! compound organ is_a: UBERON:0035555 ! lateral line sense organ relationship: never_in_taxon NCBITaxon:7915 relationship: never_in_taxon NCBITaxon:7922 relationship: part_of UBERON:0010202 ! lateral line relationship: present_in_taxon NCBITaxon:7746 relationship: present_in_taxon NCBITaxon:7777 relationship: present_in_taxon NCBITaxon:7900 relationship: present_in_taxon NCBITaxon:7911 relationship: present_in_taxon NCBITaxon:8289 relationship: present_in_taxon NCBITaxon:8296 property_value: axiom_lost_from_external_ontology "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO"} property_value: axiom_lost_from_external_ontology "relationship loss: subclass lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO"} property_value: external_definition "An electroreceptor consisting of receptor cells sunk into the epidermis or located in an epidermal cavity opening to the surface through a duct and pore. It can detect weak electric currents generated by other animals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO", source="ZipcodeZoo:ampullary_organ"} property_value: taxon_notes "The presence of these organs varies greatly among anamniotes, but an out-group analysis of their distribution in adult anamniotes suggests that they were present in primitive vertebrates and retained in living lampreys, cartilaginous fishes, lobe-finned fishes and basal ray-finned fishes (bichirs, sturgeons and paddlefishes). Ampullary organs do not occur in gars and bowfins, two of the three groups of neopterygian fishes, nor are they found in most teleost fishes, but they do appear to have re-evolved at least twice (and more likely three or more times) in five groups of teleosts (Northcutt, 1997).[http://icb.oxfordjournals.org/content/42/4/743]" xsd:string [Term] id: UBERON:0008918 name: ampulla of Lorenzini def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [Wikipedia:Ampullae_of_Lorenzini] subset: organ_slim synonym: "ampullae of Lorenzini" EXACT OMO:0003004 [Wikipedia:Ampullae_of_Lorenzini] xref: Wikipedia:Ampullae_of_Lorenzini is_a: UBERON:0003103 ! compound organ is_a: UBERON:0035555 ! lateral line sense organ relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:32523 relationship: present_in_taxon NCBITaxon:119203 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/88/Electroreceptors_in_a_sharks_head.svg" xsd:anyURI [Term] id: UBERON:0008919 name: obsolete mesenchyme from somatopleure is_obsolete: true replaced_by: UBERON:0010377 [Term] id: UBERON:0008920 name: obsolete mesenchyme from splanchnopleure is_obsolete: true replaced_by: UBERON:0010378 [Term] id: UBERON:0008921 name: substratum of layer of retina def: "Missing definition for term UBERON:0008921. Please replace it using linked reference." [UBERON:CL_meeting_20110725] is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0008922 name: sublaminar layer S1 def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000113 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 [Term] id: UBERON:0008923 name: sublaminar layer S2 def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000114 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008924 name: sublaminar layer S3 def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000115 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008925 name: sublaminar layer S4 def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000116 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008926 name: sublaminar layer S5 def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm] xref: CP:0000117 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008927 name: sublaminar layers S1 or S2 def: "One of sublaminar layers S1 or S2." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000118 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina [Term] id: UBERON:0008928 name: sublaminar layers S2 or S3 def: "One of sublaminar layers S2 or S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000119 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina [Term] id: UBERON:0008929 name: sublaminar layers S4 or S5 def: "One of sublaminar layers S4 or S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000120 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina [Term] id: UBERON:0008930 name: somatosensory cortex def: "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus." [MESH:A08.186.211.730.885.213.670.675] subset: efo_slim subset: pheno_slim synonym: "primary somatic sensory cortex" RELATED [FMA:242642] synonym: "somatic sensory cortex" EXACT [FMA:242642] synonym: "somatic sensory cortex" RELATED [BTO:0004353] synonym: "somatosensory area" RELATED [BTO:0004353] synonym: "somatosensory areas" RELATED [BAMS:SS] synonym: "somesthetic area" RELATED [BTO:0004353] xref: BAMS:SS xref: BTO:0004353 xref: EFO:0001391 xref: FMA:242642 xref: GAID:681 xref: MBA:453 xref: MESH:D013003 xref: neuronames:3241 xref: SCTID:279252006 is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain relationship: part_of UBERON:0002581 {source="BTO"} ! postcentral gyrus property_value: editor_note "TODO - add layers" xsd:string property_value: editor_note "TODO - add relationship to system (not part of, as sensory systems are peripheral)" xsd:string [Term] id: UBERON:0008933 name: primary somatosensory cortex def: "(Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker (b71,b76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the ratbs cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the bgranular aggregateb type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the bbarrel-fieldb type (originally described by Woolsey and Van der Loos, b70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, b74)." [NLX:143551] subset: pheno_slim synonym: "postcentral gyrus" RELATED [Wikipedia:Sensory_system] synonym: "primary somatosensory area" RELATED [BAMS:SSp] synonym: "primary somatosensory cortex (area S1, areas 3,1,2)" EXACT [DHBA:10209] synonym: "S1" BROAD OMO:0003000 [] synonym: "S1C" RELATED OMO:0003000 [DHBA:10209] synonym: "somatosensory area 1" EXACT [Wikipedia:Sensory_system] xref: BAMS:S1 xref: BAMS:SSp xref: DHBA:10209 xref: EMAPA:35706 xref: MA:0000908 xref: MBA:322 xref: neuronames:1350 xref: NLX:143551 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0016530 {source="DHBA", source="MA", source="NIFSTD"} ! parietal cortex property_value: external_ontology_notes "ABA disjointness - Removed relationship: part_of UBERON:0001870 frontal cortex" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0008934 name: secondary somatosensory cortex def: "The area of the upper bank of the lateral sulcus that is involved in somatic sensation." [ISBN:0838580343, MP:0000863] subset: pheno_slim synonym: "S2" BROAD OMO:0003000 [] synonym: "somatosensory area 2" EXACT [Wikipedia:Sensory_system] synonym: "supplemental somatosensory area" RELATED [BAMS:SSs] xref: BAMS:S2 xref: BAMS:SSs xref: EMAPA:35756 xref: MA:0000918 xref: MBA:378 xref: neuronames:1909 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0010262 {source="WP"} ! operculum of brain property_value: editor_note "TODO - check brodmann" xsd:string [Term] id: UBERON:0008935 name: gastropod albumen gland def: "The posterior oviduct opens into the large white albumen gland which adds a layer of albumen to the zygote before it reaches the egg capsule gland." [BTO:0000054] xref: BTO:0000054 is_a: UBERON:0005398 {source="BTO"} ! female reproductive gland [Term] id: UBERON:0008936 name: gastropod genital pore def: "A small opening on the side of the head in some gastropods through which the penis is protruded." [BTO:0004684] synonym: "genital orifice" RELATED [BTO:0004684] synonym: "genital pore" EXACT [BTO:0004684] xref: BTO:0004684 is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0008937 name: visceral hump def: "Mollusks have three distinct divisions of their body. The head contains the sensory equipment (eyes, antennae, etc) and the primitive brain. The visceral hump, which is the main body, contains most of the organs, including a complete digestive and excretory tract as well as the reproductive organs. The visceral hump also includes the two external flaps of tissue, which are known as the mantle." [BTO:0001448, http://www.britannica.com/EBchecked/topic/630349/visceral-hump] synonym: "visceral sac" RELATED [BTO:0001448] xref: BTO:0001448 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008939 name: pedal ganglion def: "The pedal ganglia mainly are necessary for coordination of locomotion of a snail." [BTO:0001012] xref: BTO:0001012 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump [Term] id: UBERON:0008940 name: parietal ganglion def: "A lateral ganglion that innervates pallial cavity, gills and skin of a snail[BTO,modified]." [BTO:0001841] xref: BTO:0001841 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump [Term] id: UBERON:0008941 name: pleural ganglion def: "A knot of nerves in The pallial cavity that innervates the mantle of a snail[BTO,modified]." [BTO:0001842] xref: BTO:0001842 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump property_value: editor_note "to be ceded to MOLO" xsd:string [Term] id: UBERON:0008942 name: gastropod cerebral ganglion def: "The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail." [BTO:0001843] synonym: "cerebral ganglion" EXACT [BTO:0001843] xref: BTO:0001843 is_a: UBERON:0000045 {source="BTO"} ! ganglion property_value: editor_note "consider merging into brain" xsd:string [Term] id: UBERON:0008943 name: headfoot def: "The head-foot is the part you see most easily in slugs and snails. It is mostly a muscular organ covered in cilia and rich in mucous cells, which the mollusc uses to move around, it normally tapers to a tail at one end and has a head incorporated in the front. The head includes a mouth, eyes and tentacles, the last two may be much reduced or even absent. In those species with shells the head-foot can be drawn into the shell." [BTO:0003509] xref: BTO:0003509 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008944 name: albumen def: "Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo." [GO:0097099, https://sourceforge.net/tracker/index.php?func=detail&aid=3357613&group_id=36855&atid=440764, Wikipedia:Albumen] synonym: "egg white" EXACT [GO:0097099] xref: BTO:0000370 xref: GO:0097099 xref: ncithesaurus:Egg_White xref: Wikipedia:Albumen is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0007379 ! shelled egg [Term] id: UBERON:0008945 name: extraembryonic endoderm def: "An extraembryonic epithelium that is formed by the delaminated cells of the primitive endoderm (hypoblast) that goes on to form the yolk sac. In mammals, as in avians, these cells do not produce any part of the newborn organism (i.e. they are extraembryonic)." [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm, https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504] xref: EHDAA2:0000473 xref: EHDAA:105 xref: EMAPA:16052 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue property_value: development_notes "forms the yolk sac (Gilbert)" xsd:string property_value: development_notes "The origin of extraembryonic endoderm is a highly controversial issue" xsd:string [Term] id: UBERON:0008946 name: lung parenchyma def: "A parenchyma that is part of a lung." [OBOL:automatic] synonym: "parenchyma of lung" RELATED [BTO:0000763] synonym: "pulmonary parenchyma" RELATED [EMAPA:35522] synonym: "respiratory portion of lung" EXACT [FMA:27360] xref: EMAPA:35522 xref: FMA:27360 xref: MA:0003168 xref: SCTID:201712001 is_a: UBERON:0000353 {source="FMA"} ! parenchyma relationship: part_of UBERON:0002048 {source="FMA"} ! lung [Term] id: UBERON:0008947 name: respiratory primordium xref: EHDAA2:0004069 xref: NCIT:C34283 xref: UMLS:C1514898 {source="ncithesaurus:Respiratory_Primordium"} is_a: UBERON:0001048 {source="Obol"} ! primordium relationship: part_of UBERON:0003258 ! endoderm of foregut [Term] id: UBERON:0008948 name: upper lobe of lung def: "A lobe of the lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] synonym: "cranial lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus superior" EXACT [FMA:7334] synonym: "lobus superior pulmonis" EXACT OMO:0003011 [FMA:TA] synonym: "superior lobe of lung" EXACT [FMA:7334] xref: FMA:7334 xref: galen:UpperLobeOfLung xref: NCIT:C12285 xref: SCTID:303548008 xref: UMLS:C0225756 {source="ncithesaurus:Lung_Upper_Lobe"} is_a: UBERON:0000101 ! lobe of lung property_value: editor_note "the logical definition must have a clause stating position relative to a lower lobe, otherwise a single lobed side (such as the left lobe in the mouse) trivially classifies as an upper lobe" xsd:string [Term] id: UBERON:0008949 name: lower lobe of lung def: "The bottom most subdivision of either the right or left lung." [ncithesaurus:Lung_Lower_Lobe] synonym: "inferior lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus inferior" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus inferior pulmonis" EXACT [https://orcid.org/0000-0002-6601-2165] xref: FMA:7335 xref: galen:LowerLobeOfLung xref: NCIT:C12287 xref: SCTID:303549000 xref: UMLS:C0225758 {source="ncithesaurus:Lung_Lower_Lobe"} is_a: UBERON:0000101 ! lobe of lung property_value: editor_note "defining lobes spatially across species" xsd:string [Term] id: UBERON:0008950 name: azygous lobe of lung def: "The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure." [http://www.e-radiography.net/radpath/a/azygoslobe.htm, http://www.gpnotebook.co.uk] is_a: UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0008951 name: left lung lobe def: "A lobe of lung that is part of a left lung." [OBOL:automatic] synonym: "lobe of left lung" EXACT [] synonym: "lobe of the left lung" EXACT [] xref: EHDAA:2981 xref: NCIT:C48945 xref: SCTID:272655003 xref: UMLS:C1285107 {source="ncithesaurus:Lobe_of_the_Left_Lung"} is_a: UBERON:0000101 ! lobe of lung relationship: part_of UBERON:0002168 ! left lung property_value: taxon_notes "1 in mice, divided into 2 in human by a single interlobar fissure, the oblqiue fissure" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0008952 name: upper lobe of left lung def: "The lobe of the left lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] synonym: "left lung cranial lobe" EXACT [EHDAA2:0000953] synonym: "left upper lobe" EXACT [FMA:7370] synonym: "left upper lobe of lung" EXACT [FMA:7370] synonym: "lobus superior (pulmo sinister)" EXACT OMO:0003011 [FMA:7370, FMA:TA] synonym: "lobus superior pulmonis sinistri" EXACT OMO:0003011 [FMA:TA] synonym: "superior lobe of left lung" EXACT [FMA:7370] xref: EHDAA2:0000953 xref: EHDAA:4957 xref: FMA:7370 xref: galen:UpperLobeOfLeftLung xref: NCIT:C33021 xref: SCTID:361984006 xref: UMLS:C1261076 {source="ncithesaurus:Upper_Lobe_of_the_Left_Lung"} is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung is_a: UBERON:0008951 ! left lung lobe relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0008953 name: lower lobe of left lung def: "A lower lobe of lung that is part of a left lung." [OBOL:automatic] synonym: "inferior lobe of left lung" EXACT [FMA:7371] synonym: "left lower lobe" EXACT [FMA:7371] synonym: "left lower lobe of lung" EXACT [FMA:7371] synonym: "left lung caudal lobe" EXACT [EHDAA2:0000945] synonym: "lobus inferior (pulmo sinister)" EXACT [FMA:7371] synonym: "lobus inferior pulmonis sinistri" EXACT OMO:0003011 [FMA:TA] xref: EHDAA2:0000945 xref: EHDAA:4949 xref: FMA:7371 xref: galen:LowerLobeOfLeftLung xref: NCIT:C33020 xref: SCTID:361989001 xref: UMLS:C1261077 {source="ncithesaurus:Lower_Lobe_of_the_Left_Lung"} is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung is_a: UBERON:0008951 ! left lung lobe relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0008954 name: lingula of left lung def: "Anterioinferior portion of left upper lung lobe." [ISBN:0123813611, Wikipedia:Lingula_of_left_lung] synonym: "left pulmonary lingula" EXACT [FMA:7433] synonym: "lingula of lung" EXACT [FMA:7433] synonym: "lingula of the lung" EXACT [] synonym: "middle lobe of left lung" RELATED [galen:MiddleLobeOfLeftLung] xref: FMA:7433 xref: galen:MiddleLobeOfLeftLung xref: NCIT:C40373 xref: SCTID:184916009 xref: UMLS:C0225740 {source="ncithesaurus:Lingula"} xref: Wikipedia:Lingula_of_left_lung is_a: UBERON:0000063 {source="FMA"} ! organ subunit relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} relationship: part_of UBERON:0008952 {source="ISBN:0123813611"} ! upper lobe of left lung property_value: external_ontology_notes "in Galen, it is a middle lobe" xsd:string property_value: taxon_notes "the lingula of the left lung in humans is not normally considered a true lobe" xsd:string {seeAlso="https://github.com/obophenotype/uberon/issues/79"} [Term] id: UBERON:0008955 name: middle lobe of lung def: "A lobe of the lung that is situated somewhere between an upper lobe and lower lobe." [https://orcid.org/0000-0002-6601-2165] synonym: "lung middle lobe" EXACT [] xref: galen:MiddleLobeOfLung xref: SCTID:362900002 is_a: UBERON:0000101 ! lobe of lung property_value: taxon_notes "mice have 4 right lobes (5 in some schemes), humans have 2, and thus no middle lobe (the lingula is not a lobe)" xsd:string [Term] id: UBERON:0008956 name: involucrum def: "A layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum." [Wikipedia:Involucrum] xref: Wikipedia:Involucrum is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone element [Term] id: UBERON:0008957 name: sequestrum def: "A piece of dead bone that has become separated during the process of necrosis from normal/sound bone.." [Wikipedia:Sequestrum] xref: Wikipedia:Sequestrum is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone element [Term] id: UBERON:0008958 name: cetacean involucrum synonym: "whale involucrum" RELATED [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001474 {source="Wikipedia:Evolution_of_cetaceans"} ! bone element [Term] id: UBERON:0008959 name: auditory bulla def: "A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla] synonym: "auditory bullae" RELATED OMO:0003004 [] synonym: "bulla" BROAD [] synonym: "bulla tympanica" RELATED OMO:0003011 [https://orcid.org/0000-0002-6601-2165] synonym: "sigmoid process" NARROW [] synonym: "tympanic bulla" RELATED [] xref: EMAPA:37433 {source="MA:th"} xref: NCIT:C112425 xref: Wikipedia:Auditory_bulla is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001690 ! ear relationship: part_of UBERON:0003113 {source="ISBN:0073040584"} ! dermatocranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Toothed_whale_sound_production.png" xsd:anyURI property_value: development_notes "may be formed from entotympanic and ectotympanic" xsd:string property_value: taxon_notes "In extant primates, the structure is found in tarsiers, lemurs, and lorises[WP]. When present in marsupials, it usually forms the alisphenoid; in placentals variously constructed of ectotympanic, entotympanic, petrosal, or a combination of these and others" xsd:string {source="Rose"} [Term] id: UBERON:0008960 name: melon organ def: "The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation." [Wikipedia:Melon_(whale)] synonym: "melon" RELATED [] xref: Wikipedia:Melon_(whale) is_a: UBERON:0010053 ! echolocation organ relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0008961 name: parabronchus def: "Tertiary bronchus in the avian lung." [http://medical-dictionary.thefreedictionary.com/parabronchi] synonym: "neopulmonic parabronchus" NARROW [] synonym: "paleopulmonic parabronchus" NARROW [] synonym: "parabronchi" RELATED OMO:0003004 [] is_a: UBERON:0002184 {notes="tertiary", source="ISBN:0073040584"} ! segmental bronchus [Term] id: UBERON:0008962 name: forelimb bone def: "A bone that is part of a forelimb region. Examples: humerus, any of the phalanges. Counter-example: scapula (a bone of the pectoral girdle). Note that we consider the forelimb to end at the shoulder." [https://orcid.org/0000-0002-6601-2165] synonym: "free forelimb bone" EXACT [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "wing bone" NARROW SENSU [Geisha:syn, NCBITaxon:8782, OBOL:automatic] xref: GAID:178 xref: MESH:D001133 xref: NCIT:C12983 xref: SCTID:368532003 xref: UMLS:C0003793 {source="ncithesaurus:Bone_of_the_Upper_Extremity"} is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex is_a: UBERON:0015021 ! forelimb endochondral element relationship: develops_from UBERON:0010883 ! forelimb cartilage element [Term] id: UBERON:0008963 name: hoof def: "The tip of a toe of an ungulate mammal, strengthened by a thick horny (keratin) covering. The hoof consists of a hard or rubbery sole, and a hard wall formed by a thick nail rolled around the tip of the toe. The weight of the animal is normally borne by both the sole and the edge of the hoof wall. Hooves grow continuously, and are constantly worn down by use." [https://github.com/obophenotype/uberon/issues/296, Wikipedia:Hoof] comment: The hoof is the integument of the foot. Like skin, the integument of the foot has three layers, namely the epidermis, dermis, and SC tissue. xref: BTO:0003994 xref: SCTID:410026002 xref: Wikipedia:Hoof is_a: UBERON:0009564 ! distal limb integumentary appendage [Term] id: UBERON:0008964 name: abdominal ganglion of visceral hump def: "An unpaired knot of nerves in The visceral sacs that innervates the pallial organs as well as the inner organs." [BTO:0000022] synonym: "abdominal ganglion" RELATED [BTO:0000022] synonym: "visceral ganglion" RELATED [BTO:0000022] xref: BTO:0000022 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump [Term] id: UBERON:0008967 name: centrum semiovale def: "The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers." [Wikipedia:Semioval_center] synonym: "centrum ovale" EXACT OMO:0003011 [FMA:61939, FMA:TA] synonym: "centrum semiovale" RELATED OMO:0003011 [Wikipedia:Semioval_center] synonym: "cerebral white matter" RELATED [] synonym: "corpus medullare cerebri" EXACT OMO:0003011 [FMA:61939, FMA:TA] synonym: "medullary center" EXACT [FMA:61939] synonym: "semioval center" RELATED [BTO:0000229] synonym: "substantia centralis medullaris cerebri" EXACT OMO:0003011 [FMA:61939, FMA:TA] synonym: "white matter of cerebrum" RELATED [FMA:61939] xref: BAMS:cw xref: BAMS:sovc xref: BTO:0000229 xref: FMA:61939 xref: neuronames:190 xref: SCTID:369198002 xref: Wikipedia:Semioval_center is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/95/Gray752.png" xsd:anyURI property_value: external_ontology_notes "WP suggests a merge with cerebral white matter" xsd:string [Term] id: UBERON:0008969 name: dental follicle def: "A sac containing the developing tooth and its odontogenic organ. The dental follicle (DF) differentiates into the periodontal ligament. In addition, it may be the precursor of other cells of the periodontium, including osteoblasts, cementoblasts and fibroblasts. They develop into the alveolar bone, the cementum with Sharpey's fibers and the periodontal ligament fibers respectively." [Wikipedia:Dental_follicle] synonym: "dental sac" RELATED [MA:0003121, Wikipedia:Dental_follicle] synonym: "tooth follicle" RELATED [BTO:0000337] xref: BTO:0000337 xref: EMAPA:35275 xref: MA:0003121 xref: MESH:D003795 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34138 xref: SCTID:110975002 xref: Wikipedia:Dental_follicle is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:0008281 ! tooth bud [Term] id: UBERON:0008971 name: left colon def: "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." [BTO:0000646] synonym: "distal colon" RELATED [BTO:0000646] xref: BTO:0000646 xref: CALOHA:TS-0202 xref: galen:LeftColon xref: NCIT:C33929 xref: SCTID:362164005 xref: UMLS:C0227388 {source="ncithesaurus:Left_Colon"} is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0001046 {source="BTO"} ! hindgut relationship: part_of UBERON:0001155 {source="BTO"} ! colon [Term] id: UBERON:0008972 name: right colon def: "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." [BTO:0000649] synonym: "proximal colon" RELATED [BTO:0000649] xref: BTO:0000649 xref: galen:RightColon xref: NCIT:C12383 xref: SCTID:362161002 xref: UMLS:C1305188 {source="ncithesaurus:Right_Colon"} is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0001045 {source="BTO"} ! midgut relationship: part_of UBERON:0001155 {source="BTO"} ! colon [Term] id: UBERON:0008974 name: apocrine gland def: "Any exocrine gland whose cells bud their secretions off through the plasma membrane producing membrane-bound vesicles in the lumen; the apical portion of the secretory cell of the gland pinches off and enters the lumen; it loses part of its cytoplasm in their secretions; apocrine secretion is functional during hormonal stress or puberty; an example of true apocrine glands are mammary glands, responsible for secreting breast milk." [MGI:anna] subset: human_reference_atlas subset: organ_slim subset: pheno_slim synonym: "true apocrine gland" EXACT [] xref: BTO:0001162 xref: EMAPA:35141 xref: MA:0003040 xref: MESH:D001050 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:361698000 xref: Wikipedia:Apocrine is_a: UBERON:0002365 ! exocrine gland relationship: present_in_taxon NCBITaxon:9606 property_value: has_relational_adjective "apocrine" xsd:string property_value: taxon_notes "Mammary glands are modified apocrine glands present in both humans and mice; unlike humans, mice do not have axillary apocrine sweat glands[MGI:anna]" xsd:string [Term] id: UBERON:0008975 name: oviduct shell gland def: "A gland in the posterior expansion of the oviduct that secretes the calcareous surroundings of the egg shell." [ISBN:978-0226870137] subset: grouping_class synonym: "nidamental gland" RELATED [] synonym: "shell gland" EXACT [BTO:0001241] xref: BTO:0001241 xref: SCTID:14478002 is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0000993 ! oviduct [Term] id: UBERON:0008976 name: snake venom gland def: "The venom gland of snakes is in actual fact a modified salivary gland and is linked to the groove in the fangs by a duct." [BTO:0001440] comment: snake venom glands are modified salivary glands. In future this class may be merged into a more general modified salivary gland venom gland class synonym: "poison gland" RELATED [BTO:0001440] synonym: "venenosalivary gland" RELATED [] synonym: "venom gland" BROAD [BTO:0001440] xref: BTO:0001440 xref: SCTID:23993002 is_a: UBERON:0011579 ! venom gland property_value: has_relational_adjective "venenosalivary" xsd:string [Term] id: UBERON:0008977 name: pes anserinus of tibia def: "The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia." [Wikipedia:Pes_anserinus_(leg)] synonym: "pes anserine" RELATED [Wikipedia:Pes_anserinus_(leg)] synonym: "pes anserinus" EXACT [BTO:0001507] synonym: "pes anserinus of leg" RELATED [Wikipedia:Pes_anserinus_(leg)] xref: BTO:0001507 xref: FMA:311256 xref: neuronames:2298 xref: SCTID:360767004 xref: Wikipedia:Pes_anserinus_(leg) is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000043 {source="BTO"} ! tendon property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/b1/Pes_anserinus.png" xsd:anyURI property_value: editor_note "Consider adding muscle insertion site class" xsd:string [Term] id: UBERON:0008978 name: anal sac def: "In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands." [BTO:0001681, http://orcid.org/0000-0002-2825-0621] xref: BTO:0001681 xref: EMAPA:37395 {source="MA:th"} xref: MA:0003058 xref: MESH:D000695 xref: SCTID:362169000 is_a: UBERON:0000062 ! organ is_a: UBERON:0009856 ! sac [Term] id: UBERON:0008979 name: carcass def: "A body of a multi-cellular organism that is no longer living." [UBERON:cjm] synonym: "cadaver" RELATED [BTO:0001965] synonym: "dead body" RELATED [BTO:0001965] xref: BTO:0001965 xref: NCIT:C113674 xref: SCTID:127853004 is_a: UBERON:0000468 ! multicellular organism [Term] id: UBERON:0008981 name: obsolete rhinencephalon def: "The olfactory region of the brain, located in the cerebrum." [BTO:0002785] comment: Obsoleted because The term rhinencephalon has been used to describe different structures at different points in time.[ISBN 0-8493-8631-4]. May refer to: a specific structure in aves; a part of the brain involved with olfaction; synonym: "olfactory brain" RELATED [BTO:0002785] is_obsolete: true consider: BTO:0002785 consider: SCTID:361576004 [Term] id: UBERON:0008982 name: fascia def: "A dense regular connective tissue that that connects muscles together[WP, modified]." [Wikipedia:Fascia] subset: pheno_slim synonym: "fascia cluster" EXACT [FMA:30318] xref: BTO:0002930 xref: EV:0100150 xref: FMA:30318 xref: MESH:D005205 xref: NCIT:C13108 xref: SCTID:181772008 xref: UMLS:C0015641 {source="ncithesaurus:Fascia"} xref: Wikipedia:Fascia is_a: UBERON:0007846 {source="Wikipedia"} ! dense regular connective tissue relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0008987 name: renal parenchyma def: "The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604] synonym: "kidney parenchyma" RELATED [BTO:0003604] synonym: "parenchyma of kidney" EXACT [FMA:15574] xref: BTO:0003604 xref: FMA:15574 xref: SCTID:29704000 is_a: UBERON:0000353 {source="FMA"} ! parenchyma relationship: part_of UBERON:0002113 {source="FMA"} ! kidney [Term] id: UBERON:0008989 name: submucosal esophageal gland def: "One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed." [BTO:0003634, Wikipedia:Esophageal_glands] synonym: "esophageal gland" EXACT [FMA:9404] synonym: "glandulae oesophageae" EXACT [Wikipedia:Esophageal_glands] synonym: "mucous gland of submucosa of esophagus" EXACT [FMA:9404] synonym: "submocosal esophageal gland" RELATED [] xref: BTO:0003634 xref: FMA:9404 xref: NCIT:C32536 xref: SCTID:322749003 xref: UMLS:C0227178 {source="ncithesaurus:Esophageal_Gland"} xref: Wikipedia:Esophageal_glands is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0011148 ! submucosal gland relationship: part_of UBERON:0001043 ! esophagus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg" xsd:anyURI [Term] id: UBERON:0008992 name: chorion frondosum def: "The part of the chorion where the villi persist, forming the foetal part of the placenta." [BTO:0003677] synonym: "shaggy chorion" RELATED [BTO:0003677] xref: BTO:0003677 xref: SCTID:37333001 is_a: UBERON:0000478 {source="BTO"} ! extraembryonic structure relationship: part_of UBERON:0003124 {source="BTO"} ! chorion membrane [Term] id: UBERON:0008993 name: habenular nucleus def: "Either of the two neural nuclei within the habenula." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "ganglion habenulae" RELATED [BTO:0003685] synonym: "habenular nuclei" RELATED OMO:0003004 [DHBA:HN] synonym: "nucleus habenulae" RELATED [BTO:0003685] xref: BAMS:N.Hb xref: BTO:0003685 xref: DHBA:10452 xref: EHDAA2:0004710 xref: HBA:4521 xref: SCTID:279303009 xref: Wikipedia:Habenular_nuclei is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001904 ! habenula relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0008994 name: equine glandular stomach def: "Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones." [BTO:0003791] synonym: "stomachus glandularis" RELATED [BTO:0003791] xref: BTO:0003791 is_a: UBERON:0000945 {source="BTO"} ! stomach property_value: editor_note "We have a distinct class for 'glandular region of stomach'. We may want to merge into this class, even though this is not considered a distinct stomach." xsd:string [Term] id: UBERON:0008995 name: nucleus of cerebellar nuclear complex def: "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii." [BTO:0003835] subset: pheno_slim synonym: "cerebellar nucleus" EXACT [BTO:0003835] synonym: "deep cerebellar nucleus" EXACT [] xref: BTO:0003835 xref: EMAPA:35272 xref: FMA:321695 xref: MA:0000203 xref: SCTID:279220006 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002130 ! cerebellar nuclear complex relationship: present_in_taxon NCBITaxon:119203 {source="ISBN:0471888893"} relationship: present_in_taxon NCBITaxon:1476529 relationship: present_in_taxon NCBITaxon:32524 relationship: present_in_taxon NCBITaxon:7878 relationship: present_in_taxon NCBITaxon:7896 relationship: present_in_taxon NCBITaxon:8292 property_value: taxon_notes "One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[BgeeDb][ISBN:0471888893]" xsd:string [Term] id: UBERON:0008998 name: vasculature of brain alt_id: UBERON:0005284 def: "System pertaining to blood vessels in the brain." [BTO:0003840] subset: efo_slim synonym: "brain vasculature" EXACT [] synonym: "cerebrovascular system" EXACT [BTO:0003840] synonym: "intracerebral vasculature" EXACT [FMA:61935] xref: BTO:0003840 xref: EFO:0003491 xref: EMAPA:35186 xref: FMA:242007 xref: FMA:61935 xref: SCTID:362029003 xref: TAO:0000099 xref: ZFA:0000099 is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0008999 name: hoof lamina def: "The tissues which attach the third phalanx to the hoof wall." [BTO:0003997] synonym: "hoof laminae" RELATED [BTO:0003997] xref: BTO:0003997 xref: SCTID:370743008 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0008963 {source="BTO"} ! hoof [Term] id: UBERON:0009000 name: ischial spine def: "A bony process projecting backward and medialward from the posterior border of the ischium." [BTO:0004149] synonym: "spina ischialis" EXACT [FMA:17028] synonym: "spine of ischium" RELATED [Wikipedia:Ischial_spine] synonym: "spine of the ischium" RELATED [Wikipedia:Ischial_spine] synonym: "the ischial spines" RELATED [Wikipedia:Ischial_spine] xref: BTO:0004149 xref: FMA:17028 xref: SCTID:18074002 xref: Wikipedia:Ischial_spine is_a: UBERON:0013706 ! bone spine relationship: part_of UBERON:0001274 ! ischium property_value: external_definition "From the posterior border of the body of the Ischium there extends backward a thin and pointed triangular eminence, the ischial spine, more or less elongated in different subjects. It can serve as a landmark in pudendal anesthesia[Wikipedia:Ischial_spine]." xsd:string {source="Wikipedia:Ischial_spine"} property_value: external_ontology_notes "BTO places this in the vertebral column" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0009002 name: placental membrane def: "The membrane separating the fetal from the maternal blood in the placenta." [BTO:0004196] subset: pheno_slim synonym: "placental barrier" RELATED [BTO:0004196] xref: BTO:0004196 xref: NCIT:C34253 xref: SCTID:256591004 xref: UMLS:C0230984 {source="ncithesaurus:Placental_Membrane"} is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001987 {source="BTO"} ! placenta relationship: part_of UBERON:0005292 ! extraembryonic tissue [Term] id: UBERON:0009005 name: femorotibial joint def: "One of the two primary bendings of a typical leg, pertains to the femur and the tibia." [BTO:0004396] synonym: "femoratibial joint" EXACT [] synonym: "knee" RELATED [] synonym: "tibiofemoral joint" EXACT [FMA:43571] xref: BTO:0004396 xref: FMA:43571 xref: SCTID:182203004 is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint relationship: part_of UBERON:0001485 ! knee joint property_value: editor_note "proposed OWL definition: skeletal join that connects ONLY tibia and femur" xsd:string [Term] id: UBERON:0009006 name: deep inguinal lymph node def: "One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes." [BTO:0004548] subset: human_reference_atlas synonym: "deep inguinal node" EXACT [FMA:44225] synonym: "femoral lymph node" EXACT [PMID:28602173] synonym: "nodi lymphatici inguinales profundi" RELATED OMO:0003011 [BTO:0004548] synonym: "nodus lymphaticus inguinalis profundus" EXACT OMO:0003011 [FMA:44225] xref: BTO:0004548 xref: FMA:44225 xref: SCTID:65266007 xref: Wikipedia:Deep_inguinal_lymph_nodes is_a: UBERON:0001542 {source="Wikipedia"} ! inguinal lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009007 name: superficial inguinal lymph node def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549] synonym: "lymph node of Cloquet" EXACT [FMA:5036] synonym: "lymph node of Rosenmuller" EXACT [FMA:5036] synonym: "nodi lymphatici inguinales superficiali" RELATED OMO:0003004 [] synonym: "nodus lymphaticus inguinalis superficialis" EXACT OMO:0003011 [FMA:5036] synonym: "superficial inguinal node" EXACT [FMA:5036] xref: BTO:0004549 xref: FMA:5036 xref: SCTID:113340006 xref: Wikipedia:Superficial_inguinal_lymph_nodes is_a: UBERON:0001542 {source="Wikipedia"} ! inguinal lymph node is_a: UBERON:0015917 ! superficial lymph node [Term] id: UBERON:0009009 name: carotid sinus nerve def: "A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius)." [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] subset: human_reference_atlas synonym: "carotid branch of glossopharyngeal nerve" EXACT [FMA:53488] synonym: "Hering sinus nerve" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] synonym: "ramus sinus carotici" EXACT OMO:0003011 [FMA:53488] synonym: "ramus sinus carotici nervi glossopharyngei" EXACT OMO:0003011 [] synonym: "ramus sinus carotici nervus glossopharyngei" EXACT OMO:0003011 [FMA:53488, FMA:TA] synonym: "sinus nerve of Hering" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] xref: BTO:0004978 xref: FMA:53488 xref: SCTID:50624003 xref: Wikipedia:Branch_of_glossopharyngeal_nerve_to_carotid_sinus is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009010 name: periurethral tissue def: "Any portion of tissue that surrounds a urethra." [UBERON:cjm] xref: BTO:0005081 xref: SCTID:256880003 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: UBERON:0009013 name: white fibrocartilage def: "Fibrocartilage in which strong bundles of white fibrous tissue predominate." [http://www.ufrgs.br/imunovet/molecular_immunology/muscles.html] xref: EMAPA:37806 {source="MA:th"} xref: MA:0000486 xref: SCTID:3008003 is_a: UBERON:0001995 {source="cjm"} ! fibrocartilage property_value: editor_note "consider merging with fibrocartilage" xsd:string [Term] id: UBERON:0009014 name: lower back skin def: "A zone of skin that is part of a lower back." [OBOL:automatic] subset: organ_slim xref: EMAPA:37281 {source="MA:th"} xref: MA:0000504 xref: SCTID:286601005 is_a: UBERON:0001068 ! skin of back is_a: UBERON:0003836 {source="MA"} ! abdominal segment skin relationship: part_of UBERON:0005462 ! lower back [Term] id: UBERON:0009015 name: upper back skin def: "A zone of skin that is part of a dorsal thoracic segment of trunk." [OBOL:automatic] xref: EMAPA:37280 {source="MA:th"} xref: MA:0000510 xref: SCTID:304890003 is_a: UBERON:0001068 ! skin of back is_a: UBERON:0001418 {source="MA"} ! skin of thorax relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk [Term] id: UBERON:0009016 name: ciliary stroma synonym: "ocular ciliary stroma" EXACT [] synonym: "stroma of ciliary body" EXACT [] xref: EMAPA:35241 xref: FMA:312260 xref: MA:0001239 xref: SCTID:280868008 is_a: UBERON:0003891 ! stroma relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body [Term] id: UBERON:0009020 name: left uterine horn def: "An uterine horn that is in the left side of a uterus." [OBOL:automatic] xref: EMAPA:37374 {source="MA:th"} xref: MA:0001727 xref: SCTID:245482004 is_a: UBERON:0002247 ! uterine horn property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009022 name: right uterine horn def: "An uterine horn that is in the right side of a uterus." [OBOL:automatic] xref: EMAPA:37375 {source="MA:th"} xref: MA:0001728 xref: SCTID:245481006 is_a: UBERON:0002247 ! uterine horn property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009024 name: adrenal gland X zone def: "A transient cortical layer juxtaposed to the medulla and the zona reticularis; in males, this zone rapidly involutes at the onset of puberty whereas this zone persists in females until the first pregnancy or later in adulthood in non-pregnant females." [MP:0008296] subset: pheno_slim synonym: "juvenile zone" RELATED [MA:0001888] synonym: "X zone" BROAD [MP:0008296] synonym: "x-zone" BROAD [MP:0008296] xref: MA:0001888 xref: SCTID:24306004 is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone [Term] id: UBERON:0009025 name: gastroepiploic artery def: "One of two (right and left) arteries along the greater curvature of the stomach that supply blood to the greater omentum and stomach." [NCIT:C52857] subset: grouping_class xref: EMAPA:37082 {source="MA:th"} xref: MA:0001962 xref: MESH:D024405 xref: NCIT:C52857 xref: SCTID:261401008 xref: UMLS:C0447070 {source="ncithesaurus:Gastroepiploic_Artery"} xref: Wikipedia:Gastroepiploic_artery is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0003497 ! abdomen blood vessel [Term] id: UBERON:0009026 name: iliac circumflex artery def: "One of two (deep circumflex and superficial circumflex) iliac arteries that supply the lower abdomen, inguinal lymph nodes, sartorius, and tensor fasciae latae." [ncithesaurus:Circumflex_Iliac_Artery] xref: EMAPA:37084 {source="MA:th"} xref: MA:0001975 xref: NCIT:C52863 xref: SCTID:244327004 xref: UMLS:C0447101 {source="ncithesaurus:Circumflex_Iliac_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009027 name: vesical artery def: "An artery that supplies blood to the urinary bladder." [http://orcid.org/0000-0002-6601-2165] synonym: "arteria vesicali" EXACT OMO:0003011 [] synonym: "vesical arteries" EXACT OMO:0003004 [] xref: EMAPA:37131 {source="MA:th"} xref: MA:0002078 xref: SCTID:244307000 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009029 name: pudendal vein def: "Either the internal or external pudendal vein, running from the genital-vulvar area and abdomen and down the leg." [http://orcid.org/0000-0002-6601-2165, https://veintreatmentcenter.com/vein-information/pudendal-veins/] synonym: "pudic vein" RELATED [] synonym: "vena pudendae" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "vena pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] xref: EMAPA:37184 {source="MA:th"} xref: MA:0002202 xref: SCTID:395225000 is_a: UBERON:0001638 {source="MA"} ! vein is_a: UBERON:0003520 ! pelvis blood vessel [Term] id: UBERON:0009030 name: left pulmonary vein def: "Vein that drains left lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37165 {source="MA:th"} xref: MA:0002207 xref: NCIT:C48946 xref: SCTID:304057004 xref: UMLS:C0226670 {source="ncithesaurus:Left_Pulmonary_Vein"} is_a: UBERON:0002016 ! pulmonary vein property_value: external_definition "A vein that returns oxygenated blood from the left lung to the left atrium of the heart[ncithesaurus:Left_Pulmonary_Vein]." xsd:string {source="ncithesaurus:Left_Pulmonary_Vein"} [Term] id: UBERON:0009032 name: right pulmonary vein def: "Vein that drains right lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37379 {source="MA:th"} xref: MA:0002208 xref: NCIT:C48947 xref: SCTID:304056008 xref: UMLS:C0226669 {source="ncithesaurus:Right_Pulmonary_Vein"} is_a: UBERON:0002016 ! pulmonary vein property_value: external_definition "A vein that returns oxygenated blood from the right lung to the left atrium of the heart[ncithesaurus:Right_Pulmonary_Vein]." xsd:string {source="ncithesaurus:Right_Pulmonary_Vein"} [Term] id: UBERON:0009035 name: renal straight tubule def: "Any region of a nephron tubule that is straight. Examples: distal convoluted tubule, proximal convoluted tuble." [http://orcid.org/0000-0002-6601-2165] synonym: "kidney straight tubule" EXACT [MA:0002634] synonym: "straight tubule" EXACT [] xref: EMAPA:37489 {source="MA:th"} xref: MA:0002634 xref: SCTID:245151008 xref: Wikipedia:Tubuli_seminiferi_recti is_a: UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0009038 name: sulcus ampullaris def: "The groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove] subset: pheno_slim synonym: "ampullary groove" EXACT [FMA:74584] synonym: "ampullary sulcus" EXACT [] xref: FMA:74584 xref: MA:0002835 xref: SCTID:368954006 is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla [Term] id: UBERON:0009039 name: lymph node germinal center def: "A germinal center that is located in a lymph node." [CL:tm] subset: human_reference_atlas subset: pheno_slim synonym: "germinal center" BROAD [BTO:0003671] synonym: "lymph node activated zone" RELATED [] synonym: "lymph node central zone" RELATED [] synonym: "lymph node light zone" NARROW [] synonym: "lymph node nodule" RELATED [] xref: BTO:0003671 xref: CALOHA:TS-1269 xref: EMAPA:35528 xref: MA:0002989 xref: NCIT:C49757 xref: SCTID:327147000 is_a: UBERON:0010754 ! germinal center relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009040 name: deep circumflex iliac artery def: "The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone." [Wikipedia:Deep_circumflex_iliac_artery] subset: human_reference_atlas synonym: "arteria circumflexa ilium profunda" EXACT [Wikipedia:Deep_circumflex_iliac_artery] synonym: "arteria circumflexa ilium profunda" RELATED OMO:0003011 [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex" RELATED [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex artery" RELATED [Wikipedia:Deep_circumflex_iliac_artery] xref: FMA:20687 xref: MESH:D007083 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32432 xref: SCTID:181353005 xref: UMLS:C0226405 {source="ncithesaurus:Deep_Circumflex_Iliac_Artery"} xref: Wikipedia:Deep_circumflex_iliac_artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009026 ! iliac circumflex artery relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery relationship: part_of UBERON:0035551 ! deep vasculature relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png" xsd:anyURI [Term] id: UBERON:0009041 name: superficial circumflex iliac artery def: "The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries." [Wikipedia:Superficial_circumflex_iliac_artery] subset: human_reference_atlas synonym: "arteria circumflexa ilium superficialis" EXACT [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "iliac circumflex artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "superficial circumflex iliac artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] xref: FMA:20737 xref: NCIT:C52864 xref: UMLS:C0738891 {source="ncithesaurus:Superficial_Circumflex_Iliac_Artery"} xref: Wikipedia:Superficial_circumflex_iliac_artery is_a: UBERON:0009026 ! iliac circumflex artery relationship: part_of UBERON:0035549 ! vasculature of integument relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png" xsd:anyURI [Term] id: UBERON:0009042 name: prostatic venous plexus def: "The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses." [Wikipedia:Prostatic_venous_plexus] subset: human_reference_atlas synonym: "plexus venosus prostaticus" RELATED OMO:0003011 [Wikipedia:Prostatic_venous_plexus] synonym: "pudendal venous plexus" RELATED [FMA:29711] xref: FMA:29711 xref: SCTID:303052003 xref: Wikipedia:Prostatic_venous_plexus is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI [Term] id: UBERON:0009044 name: pudendal venous plexus def: "The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins." [Wikipedia:Pudendal_plexus_(veins)] xref: SCTID:65326006 xref: Wikipedia:Pudendal_plexus_(veins) is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0009046 name: inferior external pudendal vein synonym: "inferior external pudic vein" RELATED [] xref: EMAPA:37155 {source="MA:th"} xref: MA:0002203 is_a: UBERON:0018253 ! external pudendal vein [Term] id: UBERON:0009047 name: superior external pudendal vein synonym: "superior external pudic vein" RELATED [] xref: EMAPA:37192 {source="MA:th"} xref: MA:0002204 is_a: UBERON:0018253 ! external pudendal vein [Term] id: UBERON:0009048 name: deep external pudendal vein subset: human_reference_atlas synonym: "deep external pudic vein" RELATED [] synonym: "vena pudendae externalis profunda" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "vena pudendales externalis profunda" EXACT OMO:0003011 [doi:10.1002/ca.23705] xref: FMA:44488 is_a: UBERON:0018253 ! external pudendal vein is_a: UBERON:0035552 ! deep vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009049 name: superficial external pudendal vein subset: human_reference_atlas synonym: "superficial external pudic vein" RELATED [] synonym: "vena pudendae externalis superficialis" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "vena pudendales externalis superficialis" EXACT OMO:0003011 [doi:10.1002/ca.23705] xref: FMA:21377 is_a: UBERON:0018253 ! external pudendal vein is_a: UBERON:0035550 ! superficial vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009050 name: nucleus of solitary tract def: "A neural nucleus that is part of the solitary tract nuclear complex. The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [OBOL:automatic, Wikipedia:Solitary_nucleus] synonym: "nuclei tractus solitarii" RELATED OMO:0003011 [NeuroNames:742] synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:1429] synonym: "nucleus of the tractus solitarius" EXACT [BIRNLEX:1429] synonym: "nucleus of tractus solitarius" EXACT [Wikipedia:Solitary_nucleus] synonym: "nucleus solitarius" RELATED OMO:0003011 [NeuroNames:742] synonym: "nucleus tracti solitarii" RELATED OMO:0003011 [NeuroNames:742] synonym: "nucleus tractus solitarii" RELATED OMO:0003011 [BTO:0003963] synonym: "nucleus tractus solitarii medullae oblongatae" EXACT OMO:0003011 [Wikipedia:Solitary_nucleus] synonym: "solitary nuclear complex" RELATED [NeuroNames:742] synonym: "solitary nucleus" EXACT [] synonym: "solitary nucleus" RELATED [BTO:0003963] synonym: "solitary tract nucleus" EXACT [] xref: BAMS:NTS xref: BAMS:Sol xref: BIRNLEX:1429 xref: BM:Me-NS xref: BTO:0003963 xref: DHBA:12557 xref: EMAPA:35787 xref: EV:0100288 xref: FMA:256691 xref: GAID:593 xref: HBA:9653 xref: MA:0001052 xref: MBA:651 xref: MESH:D017552 xref: NCIT:C13067 xref: ncithesaurus:Nucleus_of_the_Solitary_Tract xref: neuronames:742 {source="BIRNLEX:1429"} xref: UMLS:C0175518 {source="ncithesaurus:Solitary_Nucleus", source="BIRNLEX:1429"} xref: Wikipedia:Solitary_nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus relationship: part_of UBERON:0002126 ! solitary tract nuclear complex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI [Term] id: UBERON:0009051 name: gelatinous nucleus of solitary tract xref: FMA:77463 xref: MBA:674 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009052 name: medial nucleus of solitary tract xref: FMA:229585 xref: MBA:691 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009053 name: dorsal nucleus of trapezoid body synonym: "dorsal nucleus of trapezoid body" EXACT [BIRNLEX:2575] synonym: "nucleus dorsalis corporis trapezoidei" EXACT OMO:0003011 [] xref: BIRNLEX:2575 xref: neuronames:1282 xref: SCTID:369021001 xref: UMLS:C0228438 {source="BIRNLEX:2575"} xref: UMLS:C1289450 {source="BIRNLEX:2575"} is_a: UBERON:0007633 ! nucleus of trapezoid body property_value: editor_note "merge with SOC? See https://github.com/obophenotype/uberon/issues/631#issuecomment-67754754" xsd:string [Term] id: UBERON:0009054 name: open circulatory system comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph xref: FBbt:00005057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001009 {source="GO"} ! circulatory system relationship: never_in_taxon NCBITaxon:33511 [Term] id: UBERON:0009055 name: closed circulatory system is_a: UBERON:0001009 {source="GO"} ! circulatory system property_value: editor_note "consider merging with cardiovascular system?" xsd:string property_value: taxon_notes "The circulatory systems of all vertebrates, as well as of annelids (for example, earthworms) and cephalopods (squid and octopus) are closed, just as in humans. Still, the systems of fish, amphibians, reptiles, and birds show various stages of the evolution of the circulatory system" xsd:string [Term] id: UBERON:0009056 name: two-pass circulatory system def: "A closed circulatory system in which blood passes twice through the heart to supply the body once." [GO:0035905, Wikipedia:Double_circulatory_system] xref: Wikipedia:Double_circulatory_system is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009057 name: one-pass circulatory system def: "A closed circulatory system in which blood passes once through the heart to supply the body once." [GO:0035907] is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009058 name: faveolus def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [PMID:12869615] comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] synonym: "edicula" RELATED SENSU [PMID:12625309] synonym: "faveoli" RELATED OMO:0003004 [] synonym: "lung faveolus" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009060 name: air sac def: "Any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs." [http://www.thefreedictionary.com/air+sac, Wikipedia:Bird_anatomy#Respiratory_system] comment: Three distinct sets of organs perform respiration-the anterior air sacs (interclavicular, cervicals, and anterior thoracics), the lungs, and the posterior air sacs (posterior thoracics and abdominals). The posterior and anterior air sacs, typically nine, expand during inhalation. Air enters the bird via the trachea. Half of the inhaled air enters the posterior air sacs, the other half passes through the lungs and into the anterior air sacs. Air from the anterior air sacs empties directly into the trachea and out the bird's mouth or nares. The posterior air sacs empty their air into the lungs. Air passing through the lungs as the bird exhales is expelled via the trachea. Some taxonomic groups (Passeriformes) possess 7 air sacs, as the clavicular air sacs may interconnect or be fused with the cranial thoracic air sacs[WP] synonym: "psotcranial air sac" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "sacci pneumatici" EXACT OMO:0003011 [] xref: MESH:D000400 xref: NCIT:C120926 xref: SCTID:49081009 xref: Wikipedia:Bird_anatomy#Respiratory_system is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001004 ! respiratory system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f2/BirdRespiration.svg" xsd:anyURI [Term] id: UBERON:0009061 name: anterior air sac comment: interclavicular, cervicals, & anterior thoracics subset: grouping_class synonym: "cranial air sac" RELATED [] is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009062 name: posterior air sac comment: Half of the inhaled air enters the posterior air sacs. The posterior air sacs empty their air into the lungs. // posterior thoracics & abdominals subset: grouping_class synonym: "caudal air sac" RELATED [] is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009063 name: interclavicular air sac comment: Unapaired[Kardong] is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009064 name: cervical air sac xref: SCTID:62426003 is_a: UBERON:0009061 ! anterior air sac is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0009065 name: anterior thoracic air sac synonym: "cranial thoracic air sac" RELATED [] synonym: "cranial thoracic sac" RELATED [] xref: SCTID:17911004 is_a: UBERON:0009061 ! anterior air sac is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0009066 name: posterior thoracic air sac synonym: "caudal thoracic air sac" RELATED [] synonym: "caudal thoracic sac" RELATED [] xref: SCTID:10576005 is_a: UBERON:0009062 ! posterior air sac is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0009067 name: abdominal air sac xref: SCTID:43701009 is_a: UBERON:0009062 ! posterior air sac is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0009071 name: mesobronchus subset: organ_slim synonym: "mesobronchi" RELATED OMO:0003004 [] is_a: UBERON:0002182 {source="ISBN:0073040584"} ! main bronchus is_a: UBERON:0035767 ! intrapulmonary bronchus [Term] id: UBERON:0009072 name: ventrobronchus subset: organ_slim synonym: "ventrobronchi" RELATED OMO:0003004 [] is_a: UBERON:0035767 ! intrapulmonary bronchus [Term] id: UBERON:0009073 name: dorsobronchus synonym: "dorsobronchi" RELATED OMO:0003004 [] is_a: UBERON:0002183 {notes="secondary"} ! lobar bronchus [Term] id: UBERON:0009074 name: syrinx organ def: "Vocal organ of birds, located at the base of a trachea." [Wikipedia:Syrinx_(bird_anatomy)] subset: organ_slim synonym: "avian vocal organ" RELATED [] synonym: "syrinx" RELATED [] xref: NCIT:C111323 xref: Wikipedia:Syrinx_(bird_anatomy) is_a: UBERON:0034681 ! vocal organ relationship: part_of UBERON:0003126 ! trachea property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/87/Syrinx.jpg" xsd:anyURI [Term] id: UBERON:0009075 name: membrana tympaniformis def: "An anatomical wall that is part of a syrinx organ." [OBOL:automatic] synonym: "syrinx organ wall" EXACT [] synonym: "wall of syrinx" EXACT [Wikipedia:Syrinx_(bird_anatomy)] is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009076 name: membrana tympaniformis lateralis synonym: "lateral wall of syrinx" EXACT [] is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009077 name: membrana tympaniformis medialis synonym: "medial wall of syrinx" EXACT [] is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009078 name: pessulus def: "A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds." [http://www.encyclo.co.uk/webster/P/64] is_a: UBERON:0003604 ! trachea cartilage relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009089 name: inner medulla descending vasa recta xref: KUPO:0001003 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medullar parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009090 name: outer medulla descending vasa recta xref: KUPO:0001004 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medullar parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009091 name: ascending vasa recta subset: human_reference_atlas xref: KUPO:0001005 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009092 name: inner medulla ascending vasa recta xref: KUPO:0001006 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medulla parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009093 name: outer medulla ascending vasa recta xref: KUPO:0001007 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medulla parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009095 name: tip of renal papilla subset: human_reference_atlas synonym: "papillary tip" EXACT [KUPO:0001009] synonym: "papillary tips" EXACT OMO:0003004 [KUPO:0001009] xref: KUPO:0001009 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009096 name: obsolete gravid stage comment: Obsoleted as the gravid stage is not a life cycle stage. A similar term may be recreated when we have stages specific to structures such as the uterus is_obsolete: true consider: UBERON:0009097 [Term] id: UBERON:0009097 name: gravid organism def: "An organism containing a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733] synonym: "gravid" RELATED [BTO:0004733] synonym: "pregnant adult" RELATED [BTO:0004733] synonym: "pregnant adult stage" RELATED [BTO:0004733] synonym: "pregnant organism" RELATED [] synonym: "pregnant stage" RELATED [BTO:0004733] xref: BTO:0004733 xref: IDOMAL:0000443 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0007023 ! adult organism [Term] id: UBERON:0009098 name: gravid uterus def: "The uterus in pregnancy." [http://medical-dictionary.thefreedictionary.com/gravid+uterus] synonym: "womb" RELATED [] xref: NCIT:C12406 xref: ncithesaurus:Gravid_Uterus xref: SCTID:362253003 xref: UMLS:C1514389 {source="ncithesaurus:Pregnant_Uterus"} is_a: UBERON:0000995 ! uterus relationship: part_of UBERON:0009097 ! gravid organism [Term] id: UBERON:0009099 name: typhlosole def: "An invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development." [PMCID:PMC2093943, Wikipedia:Typhlosole] xref: Wikipedia:Typhlosole is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0003929 ! digestive tract epithelium relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0009100 name: nephric fold def: "Missing definition for term UBERON:0009100. Please replace it using linked reference." [PMCID:PMC2093943] comment: Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0009101 name: ammocoete def: "Lamprey at larval stage." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002548 ! larva [Term] id: UBERON:0009102 name: supraneural body def: "One of the primary immunological organs of the adult lamprey is the supraneural body. This structure lies dorsal to spinal column and becomes heavily populated with lymphocytes following after immune challenge." [DOI:10.2307/1442643] subset: organ_slim synonym: "dorsal fat body" EXACT [PMCID:PMC2093943] synonym: "pro-vertebral arch" EXACT [PMCID:PMC2093943] is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ property_value: taxon_notes "The supraneural body from hematopoietically stimulated lampreys appears to be histologically-similar to 'bone marrow' in higher vertebrates and contains all blood cell lineages and their precursors, including lymphocytes at all stages of maturity" xsd:string [Term] id: UBERON:0009113 name: obsolete thymic region is_obsolete: true [Term] id: UBERON:0009114 name: cervical thymus def: "A mature thymus that is entirely part of the cervical region." [https://orcid.org/0000-0002-6601-2165] subset: organ_slim is_a: UBERON:0002370 ! thymus relationship: part_of UBERON:0000974 ! neck relationship: present_in_taxon NCBITaxon:39107 relationship: present_in_taxon NCBITaxon:9263 property_value: taxon_notes "A cervical thymus is a pathological structure in a human - it can form during the migration of the thymus to its location in the mediastinum. Some mice have a cervical thymus. There are examples of cervical thymi in marsupials and prosimians[ISBN:0781714125]" xsd:string [Term] id: UBERON:0009115 name: thoracic thymus def: "A mature thymus that is entirely part of thoracic region." [https://orcid.org/0000-0002-6601-2165] subset: organ_slim is_a: UBERON:0002370 ! thymus is_a: UBERON:0005178 ! thoracic cavity element [Term] id: UBERON:0009116 name: thymoid def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [PMID:21293377] comment: Genes: FOXN1 subset: organ_slim is_a: UBERON:0003295 ! pharyngeal gland is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0005058 ! hemolymphoid system gland is_a: UBERON:0006925 ! digestive system gland relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0009117 name: indifferent gonad def: "A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981] comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] subset: organ_slim synonym: "gonad rudiment" RELATED [] xref: EHDAA2:0000716 xref: NCIT:C34192 xref: UMLS:C1512703 {source="ncithesaurus:Indifferent_Gonad"} is_a: UBERON:0000991 ! gonad relationship: part_of UBERON:0009196 ! indifferent external genitalia [Term] id: UBERON:0009118 name: marsupium synonym: "marsupial pouch" EXACT [] synonym: "pouch" BROAD [] xref: Wikipedia:Pouch_(marsupial) is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0009119 name: branchial basket def: "The network-like non-segmented cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali, connected to the heart and surrounding respiratory tissue." [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm, UBERON:cjm] subset: cyclostome_subset synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton relationship: never_in_taxon NCBITaxon:117570 relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depiction "http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg" xsd:anyURI property_value: editor_note "developmental relationship needs to be changed if the scope is broadened, as NC is vertebrate-specific" xsd:string property_value: function_notes "functions by elastic recoil" xsd:string property_value: taxon_notes "May also be present in amphioxus" xsd:string [Term] id: UBERON:0009120 name: gill filament def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [http://www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-961014-576] subset: efo_slim synonym: "gill filaments" EXACT OMO:0003004 [ZFA:0000667] xref: BTO:0002150 xref: EFO:0003554 xref: TAO:0000667 xref: ZFA:0000667 is_a: UBERON:0000479 {source="ZFA"} ! tissue relationship: part_of UBERON:0002535 {source="ZFA"} ! gill property_value: external_definition "Branched region of the gill where respiratory exchange takes place. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000667", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0009121 name: vomeronasal nerve def: "Nerve carrying fibers from the vomeronasal organ epithelium to the accessory olfactory bulb." [AAO:DSM, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] synonym: "accessory olfactory bulb vomeronasal nerve" RELATED [BAMS:vn] xref: AAO:0010608 xref: BAMS:vn xref: BAMS:von xref: BTO:0001351 xref: MBA:949 xref: neuronames:1567 xref: NLXANAT:1005018 is_a: UBERON:0001785 {source="NIFSTD"} ! cranial nerve is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003050 {source="ISBN:0471888893"} ! olfactory placode relationship: part_of UBERON:0009954 ! vomeronasal system property_value: external_definition "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010608", ontology="AAO", source="AAO:DSM"} property_value: taxon_notes "In the human this disappears before birth" xsd:string [Term] id: UBERON:0009122 name: adenohypophyseal placode def: "The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary." [http://www.ncbi.nlm.nih.gov/books/NBK53175/] subset: efo_slim synonym: "pituitary placode" RELATED [ZFA:0001198] xref: EFO:0000229 xref: TAO:0001198 xref: XAO:0004208 xref: ZFA:0001198 is_a: UBERON:0002546 ! cranial placode is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode relationship: develops_from UBERON:0005497 {source="ZFA"} ! non-neural ectoderm property_value: development_notes "Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathke's pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathke's pouch, the anlage of the adenohypophysis. Rathke's pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke's pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009)" xsd:string property_value: editor_note "consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm" xsd:string [Term] id: UBERON:0009124 name: geniculate placode def: "Rostralmost epibranchial placode. Associated with 1st branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to geniculate ganglion synonym: "epibranchial placode 1" EXACT [EHDAA2:0004206] synonym: "facial epibranchial placode" EXACT [XAO:0004211] synonym: "facial placode" EXACT [ZFA:0001295] synonym: "facial VII placode" RELATED [] synonym: "hyoid placode" RELATED [ISBN:0471888893] synonym: "hyoid VII placode" RELATED [ISBN:0471888893] xref: EHDAA2:0004206 xref: TAO:0001295 xref: XAO:0004211 xref: ZFA:0001295 is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode [Term] id: UBERON:0009125 name: petrosal placode def: "Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to glossopharyngeal ganglion synonym: "epibranchial placode 2" EXACT [EHDAA2:0004207] synonym: "glossopharyngeal epibranchial placode" EXACT [XAO:0004212] synonym: "glossopharyngeal IX placode" EXACT [ISBN:0471888893] synonym: "glossopharyngeal placode" EXACT [ISBN:0471888893, ZFA:0001296] xref: EHDAA2:0004207 xref: TAO:0001296 xref: XAO:0004212 xref: ZFA:0001296 is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode [Term] id: UBERON:0009126 name: nodosal placode def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: Gives rise to inferior vagus ganglion. Note that ZFA has 4 vagal placodes synonym: "epibranchial placode 3" EXACT [EHDAA2:0004208] synonym: "nodose placode" EXACT [XAO:0004213] synonym: "nodose placodes" EXACT OMO:0003004 [XAO:0004213] synonym: "vagal epibranchial placode" EXACT [XAO:0004213] synonym: "vagal epibranchial placodes" EXACT OMO:0003004 [XAO:0004213] synonym: "vagal placode" RELATED [ISBN:0471888893] synonym: "vagal X placode" RELATED [ISBN:0471888893] xref: EHDAA2:0004208 xref: XAO:0004213 is_a: UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibranchial placode [Term] id: UBERON:0009127 name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest subset: human_reference_atlas synonym: "epibranchial ganglia" EXACT OMO:0003004 [ZFA:0001555] xref: BTO:0006250 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001555 xref: ZFA:0001555 is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibranchial placode relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009128 name: lateral line placode def: "An ectodermal placode that will develop into the components of the lateral line system." [http://orcid.org/0000-0002-6601-2165] synonym: "lateral line placodes" RELATED OMO:0003004 [XAO:0000440] xref: AAO:0010718 xref: XAO:0000440 is_a: UBERON:0003067 {source="ISBN:0471888893"} ! dorsolateral placode relationship: never_in_taxon NCBITaxon:32524 {source="http://tolweb.org/Amniota"} property_value: editor_note "TODO - compare with protoneuromast" xsd:string property_value: external_definition "Specialized series of dorsolateral ectodermal placodes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010718", ontology="AAO", source="AAO:SIQ"} [Term] id: UBERON:0009129 name: right atrium endocardium def: "Endocardium that is part of the right atrium." [http://orcid.org/0000-0002-6601-2165] synonym: "endocardium of right atrium" EXACT [FMA:7281] synonym: "right atrial endocardium" EXACT [FMA:7281] synonym: "right atrium endocardial tissue" RELATED [VHOG:0001228] xref: EHDAA2:0000274 xref: FMA:7281 xref: NCIT:C102339 xref: SCTID:3194006 xref: VHOG:0001228 is_a: UBERON:0002166 ! endocardium of atrium relationship: develops_from UBERON:0005092 {source="EHDAA2"} ! right horn of sinus venosus relationship: part_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0006218 {source="EHDAA2"} ! common atrial chamber [Term] id: UBERON:0009130 name: dorsal meso-duodenum xref: RETIRED_EHDAA2:0000411 xref: SCTID:361433003 is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure relationship: part_of UBERON:0005712 {source="EHDAA2"} ! midgut duodenum mesentery [Term] id: UBERON:0009131 name: obsolete midbrain vesicle comment: Obsoleted as the meaning of the class was unclear in earlier versions of EHDAA2 is_obsolete: true consider: EHDAA2:0001103 consider: SCTID:361481005 [Term] id: UBERON:0009132 name: peroneus def: "One of a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals." [Wikipedia:Fibularis_muscles] subset: pheno_slim synonym: "fibularis" EXACT [] synonym: "fibularis muscle" EXACT [] synonym: "peroneal muscle" EXACT [] synonym: "peroneal muscle group" EXACT [] synonym: "peroneal muscles" EXACT [] synonym: "peroneus muscle" EXACT [] synonym: "peronæus muscle" EXACT [] xref: EHDAA2:0001450 xref: EHDAA:8297 xref: EMAPA:36251 xref: SCTID:181694005 xref: Wikipedia:Fibularis_muscles is_a: UBERON:0004256 ! hindlimb zeugopod muscle [Term] id: UBERON:0009133 name: pleuroperitoneal membrane alt_id: UBERON:0009146 def: "A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities." [http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane, Wikipedia:Pleuroperitoneal] synonym: "pleuroperitoneal fold" EXACT [VHOG:0000757] synonym: "pleuroperitoneal membranes" EXACT OMO:0003004 [EHDAA2:0001483] xref: EHDAA2:0001483 xref: EMAPA:17709 xref: NCIT:C34256 xref: SCTID:361429005 xref: UMLS:C1283968 {source="ncithesaurus:Pleuroperitoneal_Membrane"} xref: VHOG:0000757 xref: Wikipedia:Pleuroperitoneal is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue property_value: homology_notes "In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000757", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.205-206", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009138 name: right common cardinal vein synonym: "common cardinal vein right" EXACT [EHDAA2:0004535] xref: EHDAA2:0004535 xref: FMA:70310 xref: SCTID:361507009 is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein property_value: taxon_notes "only a vestige of the right duct in the adult hagfish (21)[PMID:20959416, S1]" xsd:string [Term] id: UBERON:0009139 name: right posterior cardinal vein alt_id: UBERON:0013123 def: "A posterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "posterior cardinal vein right" EXACT [EHDAA2:0004536] synonym: "right postcardinal vein" EXACT [FMA:70315] xref: EHDAA2:0004536 xref: FMA:70315 xref: SCTID:361505001 is_a: UBERON:0002065 ! posterior cardinal vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009140 name: right subcardinal vein def: "A subcardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "subcardinal vein right" EXACT [EHDAA2:0004538] xref: EHDAA2:0004538 xref: SCTID:361452009 is_a: UBERON:0006296 ! subcardinal vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009141 name: craniocervical region vein def: "A vein that is part of a craniocervical region." [OBOL:automatic] synonym: "craniocervical vein" EXACT [] synonym: "head and neck veins" EXACT [EHDAA2:0004542] synonym: "vein of head and neck" EXACT [] xref: EHDAA2:0004542 xref: SCTID:32945007 is_a: UBERON:0013140 ! systemic vein relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0009142 name: entire embryonic mesenchyme alt_id: UBERON:0003313 def: "Sum total of mesenchyme in the embryo." [https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/7] xref: EHDAA2:0001113 xref: EHDAA:177 xref: EMAPA:16097 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000922 ! embryo property_value: editor_note "consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)" xsd:string [Term] id: UBERON:0009143 name: obsolete developing esophageal region synonym: "oesophageal region" BROAD [EMAPA:16700] synonym: "oesophageal region" EXACT [RETIRED_EHDAA2:0000654] is_obsolete: true consider: UBERON:0001043 [Term] id: UBERON:0009145 name: pharyngeal region of foregut synonym: "pharyngeal region" EXACT [EMAPA:16549] xref: EMAPA:16549 xref: RETIRED_EHDAA2:0001454 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut [Term] id: UBERON:0009149 name: foramen primum def: "Opening in the septum primum between the two atria of the embryonic heart[TMD]." [http://medical-dictionary.thefreedictionary.com/foramen+primum, Wikipedia:Primary_interatrial_foramen] synonym: "interatrial foramen primum" EXACT [Wikipedia:Primary_interatrial_foramen] synonym: "ostium primum" EXACT [http://medical-dictionary.thefreedictionary.com/foramen+primum] synonym: "primary interatrial foramen" EXACT [Wikipedia:Primary_interatrial_foramen] xref: EHDAA2:0001826 xref: EMAPA:17012 xref: NCIT:C34178 xref: SCTID:308852002 xref: UMLS:C1517292 {source="ncithesaurus:Foramen_Primum"} xref: VHOG:0001470 xref: Wikipedia:Primary_interatrial_foramen is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0004154 ! atrial septum primum property_value: external_definition "First of the two openings to perforate the septum primum between the two atria of the embryonic heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001470", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/foramen"} property_value: homology_notes "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620]; [about heart development] In the various tetrapod classes ontogenetic events essentially recapitulate the phylogenetic stages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001470", ontology="VHOG", source="ISBN:978-0721676678 p.433", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009191 name: sphenoid bone pre-cartilage condensation def: "A sphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] xref: EHDAA2:0003446 xref: EMAPA:18015 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0009891 ! facial mesenchyme is_a: UBERON:0015060 ! sphenoid endochondral element relationship: part_of UBERON:0001703 {source="EHDAA2"} ! neurocranium relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium [Term] id: UBERON:0009192 name: basisphenoid pre-cartilage condensation synonym: "basi-sphenoid pre-cartilage condensation" EXACT [EHDAA2:0003447] xref: EHDAA2:0003447 xref: EMAPA:18013 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium [Term] id: UBERON:0009193 name: sphenoid cartilage element def: "A sphenoid endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] xref: EHDAA2:0001888 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0009891 ! facial mesenchyme is_a: UBERON:0015060 ! sphenoid endochondral element relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation [Term] id: UBERON:0009194 name: basisphenoid cartilage condenstion synonym: "basisphenoid cartilage condensation" EXACT [VHOG:0001338] xref: EHDAA2:0000166 xref: EMAPA:18338 xref: VHOG:0001338 is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009891 ! facial mesenchyme relationship: develops_from UBERON:0009192 {source="EHDAA2"} ! basisphenoid pre-cartilage condensation relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid cartilage element [Term] id: UBERON:0009195 name: anal membrane def: "The dorsal part of the cloacal membrane following its partition by the urorectal septum." [ncithesaurus:Anal_Membrane] comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] xref: EHDAA2:0004018 xref: NCIT:C34105 xref: SCTID:344130000 xref: UMLS:C1288337 {source="ncithesaurus:Anal_Membrane"} is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0006217 {source="EHDAA2"} ! cloacal membrane relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region [Term] id: UBERON:0009196 name: indifferent external genitalia subset: organ_slim xref: EHDAA2:0004021 is_a: UBERON:0004176 {source="cjm"} ! external genitalia relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009197 name: basioccipital pre-cartilage condensation def: "A basioccipital endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] xref: EHDAA2:0000165 xref: EHDAA:6033 xref: EMAPA:18012 xref: VHOG:0000959 is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0015048 ! basioccipital endochondral element [Term] id: UBERON:0009198 name: craniofacial suture def: "Any suture between cranial and/or facial bones." [GO:0097094] synonym: "articulation of skull bones" RELATED [OBOL:automatic] synonym: "joint of the skull bones" EXACT [OBOL:automatic] is_a: UBERON:0002209 ! fibrous joint relationship: part_of UBERON:0010323 ! cranial skeletal system property_value: editor_note "we follow GO in dividing sutures into cranial and facial and making a grouping class, but this is not consistent with FMA" xsd:string [Term] id: UBERON:0009199 name: facial suture def: "Any suture between facial bones." [GO:0097096] is_a: UBERON:0009198 ! craniofacial suture relationship: part_of UBERON:0011156 ! facial skeleton [Term] id: UBERON:0009200 name: limb epidermis def: "The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." [GOC:dph, GOC:sdb_2009, GOC:tb] xref: EMAPA:32728 is_a: UBERON:0001003 ! skin epidermis is_a: UBERON:3000981 ! limb external integument structure [Term] id: UBERON:0009201 name: nephric duct def: "A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176] comment: pronephric duct or mesonephric duct xref: EMAPA:16577 xref: Wikipedia:Wolffian_duct is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006553 ! renal duct is_a: UBERON:0006555 ! excretory tube [Term] id: UBERON:0009202 name: descending vasa recta subset: human_reference_atlas xref: KUPO:0001002 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009203 name: internasal suture def: "A suture joining the nasal bones." [Wikipedia:Internasal_suture] synonym: "inter-nasal suture" EXACT [] synonym: "internasal suture of skull" EXACT [FMA:52959] synonym: "nasal suture" BROAD [GO:0097097] synonym: "sutura internasalis" EXACT [Wikipedia:Internasal_suture] synonym: "sutura internasalis" RELATED OMO:0003011 [Wikipedia:Internasal_suture] xref: FMA:52959 xref: SCTID:368990004 xref: Wikipedia:Internasal_suture is_a: UBERON:0011160 ! nasal suture [Term] id: UBERON:0009204 name: medial nasal process mesenchyme def: "Mesenchyme that is part of a medial nasal prominence." [OBOL:automatic] xref: EHDAA2:0001077 xref: EMAPA:16810 xref: FMA:312659 is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process relationship: part_of UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence [Term] id: UBERON:0009205 name: lateral nasal process mesenchyme def: "Mesenchyme that is part of a lateral nasal prominence." [OBOL:automatic] synonym: "mesenchyme of latero-nasal process" EXACT [EMAPA:16807] xref: EHDAA2:0000917 xref: EMAPA:16807 xref: FMA:312665 is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process relationship: part_of UBERON:0004067 ! lateral nasal prominence [Term] id: UBERON:0009206 name: lateral nasal process surface ectoderm def: "An ectoderm that is part of a lateral nasal prominence." [OBOL:automatic] synonym: "ectoderm of latero-nasal process" EXACT [EMAPA:16806] xref: EHDAA2:0000918 xref: EMAPA:16806 is_a: UBERON:0000924 ! ectoderm is_a: UBERON:0014702 ! frontonasal process epithelium relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0004067 ! lateral nasal prominence [Term] id: UBERON:0009207 name: geschmacksstreifen def: "Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982)." [PMID:19295142] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0009210 name: pharyngeal membrane def: "A thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] comment: each membrane is initially composed of an inner layer formed by the endodermal lining of a branchial pouch and an outer layer formed by the ectodermal lining of the branchial groove; later, these two layers become separated by a thin layer of mesoderm; only the first branchial membrane contributes to the formation of an adult structure, i.e. the tympanic membrane (aka eardrum); the second, third, and fourth membranes are obliterated[MP] subset: pheno_slim synonym: "branchial arch membrane" EXACT [EMAPA:32749] synonym: "branchial membrane" EXACT [] synonym: "pharyngeal membrane" EXACT [] xref: EMAPA:32749 xref: FMA:295758 xref: NCIT:C34251 xref: UMLS:C1519040 {source="ncithesaurus:Pharyngeal_Membrane"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002539 {source="EMAPA"} ! pharyngeal arch property_value: homology_notes "In all vertebrates, the endodermal epithelium lining each pouch contacts the surface ectoderm of the clefts to form a series of bilayered branchial membranes, that break down in fish to form the gill openings.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001427", ontology="VHOG", source="ISBN:978-0124020603 Kaufman MH, Bard JBL, The anatomical basis of mouse development (1999) p.72", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009213 name: pharyngeal membrane of 1st arch def: "A pharyngeal membrane that separates the first pharyngeal cleft from the first pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] synonym: "1st branchial membrane" EXACT [EMAPA:16992] synonym: "1st pharyngeal membrane" EXACT [VHOG:0001427] synonym: "future tympanic membrane" EXACT [EMAPA:17281] synonym: "tympanic membrane primordium" EXACT [ISBN:1416037055] xref: EHDAA:3788 xref: EMAPA:16121 xref: EMAPA:16992 xref: EMAPA:17281 xref: VHOG:0001427 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0004362 {source="EMAPA"} ! pharyngeal arch 1 property_value: editor_note "check EMAPA - 3 terms appear to match. We follow EMAPA in making each membrane part of the arch with the same number, though in fact it is between these arches" xsd:string [Term] id: UBERON:0009215 name: pharyngeal membrane of 2nd arch def: "A pharyngeal membrane that separates the second pharyngeal cleft from the second pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] synonym: "2nd pharyngeal membrane" EXACT [VHOG:0000877] xref: EMAPA:16273 xref: VHOG:0000877 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0003066 {source="EMAPA"} ! pharyngeal arch 2 property_value: homology_notes "In all vertebrates, the endodermal epithelium lining each pouch contacts the surface ectoderm of the clefts to form a series of bilayered branchial membranes, that break down in fish to form the gill openings.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000877", ontology="VHOG", source="ISBN:978-0124020603 Kaufman MH and Bard JBL, The anatomical basis of mouse development (1999) p.72", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009216 name: pharyngeal membrane of 3rd arch def: "A pharyngeal membrane that separates the third pharyngeal cleft from the third pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] synonym: "3rd pharyngeal membrane" EXACT [VHOG:0000876] xref: EMAPA:16583 xref: VHOG:0000876 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0003114 {source="EMAPA"} ! pharyngeal arch 3 property_value: homology_notes "In all vertebrates, the endodermal epithelium lining each pouch contacts the surface ectoderm of the clefts to form a series of bilayered branchial membranes, that break down in fish to form the gill openings.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000876", ontology="VHOG", source="ISBN:978-0124020603 Kaufman MH and Bard JBL, The anatomical basis of mouse development (1999) p.72", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009217 name: pharyngeal membrane of 4th arch def: "A pharyngeal membrane that separates the fourth pharyngeal cleft from the fourth pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] synonym: "4th pharyngeal membrane" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:16763 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0003115 {source="EMAPA"} ! pharyngeal arch 4 [Term] id: UBERON:0009291 name: cartilaginous vertebral centrum def: "Cartilaginous form of a vertebral centrum, a skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, VSAO:0000183, VSAO:curator] comment: cartilaginous centrum of vertebra[PMID:11746457] synonym: "cartilaginous centrum of vertebra" EXACT [] synonym: "postcaudal cartilaginous centrum" NARROW [PMID:11746457] xref: SCTID:317278007 is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0016491 ! vertebral centrum element relationship: part_of UBERON:0011094 ! vertebra cartilage element [Term] id: UBERON:0009292 name: embryonic nasal process synonym: "nasal placode" RELATED [] xref: EHDAA2:0000581 xref: EHDAA:4776 xref: EMAPA:16680 xref: SCTID:308881001 is_a: UBERON:0012314 ! embryonic facial prominence property_value: external_ontology_notes "medial or lateral; in EHDAA2 also frontonasal or intermaxillary" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0009293 name: embryonic frontal process synonym: "frontal process" EXACT [VHOG:0001323] xref: EHDAA:4780 xref: EMAPA:16802 xref: FMA:313738 xref: SCTID:346265009 xref: VHOG:0001323 is_a: UBERON:0012314 ! embryonic facial prominence relationship: part_of UBERON:0004066 {source="EMAPA"} ! frontonasal prominence [Term] id: UBERON:0009468 name: basiotic bone def: "A small bone in the fetus between the basilar process and the basisphenoid." [http://medical-dictionary.thefreedictionary.com/basiotic+bone] synonym: "basiotic" EXACT [] xref: FMA:321631 xref: SCTID:95946002 is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009470 name: postsphenoidal bone def: "The posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae." [http://www.merriam-webster.com/dictionary/postsphenoid, Wikipedia:Ossification_of_sphenoid#Postsphenoid] xref: FMA:321633 xref: SCTID:95950009 xref: Wikipedia:Ossification_of_sphenoid#Postsphenoid is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone [Term] id: UBERON:0009471 name: dorsum of tongue def: "The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html] subset: human_reference_atlas synonym: "dorsal tongue" EXACT [FMA:54651] synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "tongue dorsum" EXACT [FMA:54651] xref: FMA:54651 xref: NCIT:C32482 xref: SCTID:66938003 xref: UMLS:C0226952 {source="ncithesaurus:Dorsum_of_the_Tongue"} is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 {source="FMA"} ! tongue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009472 name: axilla def: "The axilla is the area directly under the joint where the forelimb connects to the shoulder." [Wikipedia:Axilla] subset: efo_slim subset: pheno_slim synonym: "arm pit" EXACT [Wikipedia:Axilla] synonym: "armpit" EXACT [Wikipedia:Axilla] synonym: "armpits" RELATED [Wikipedia:Axilla] synonym: "axilla" RELATED OMO:0003011 [Wikipedia:Axilla] synonym: "axillae" RELATED [Wikipedia:Axilla] synonym: "axillary region" EXACT [FMA:24864] synonym: "axillary region" RELATED [Wikipedia:Axilla] synonym: "oxter" RELATED [Wikipedia:Axilla] synonym: "regio axillaris" EXACT OMO:0003011 [FMA:TA] synonym: "underarm" RELATED [Wikipedia:Axilla] xref: CALOHA:TS-2208 xref: EFO:0001395 xref: FMA:24864 xref: galen:Axilla xref: MESH:D001365 xref: NCIT:C12674 xref: SCTID:362732006 xref: UMLS:C0004454 {source="ncithesaurus:Axilla"} xref: Wikipedia:Axilla is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001421 {source="FMA"} ! pectoral girdle region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png" xsd:anyURI property_value: has_relational_adjective "axillary" xsd:string [Term] id: UBERON:0009473 name: parapodium def: "Either of a pair of fleshy lateral processes borne by most segments of a polychaete worm." [http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672, Wikipedia:Parapodium] synonym: "paradpod" EXACT [] synonym: "paradpodia" RELATED OMO:0003004 [] synonym: "polychaete paradpodium" EXACT [] xref: Wikipedia:Parapodium is_a: UBERON:0000026 {source="cjm"} ! appendage relationship: part_of UBERON:0000914 ! organismal segment [Term] id: UBERON:0009474 name: ascidian ampulla synonym: "ampulla" BROAD [] xref: NCIT:C93230 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0009475 name: ampullar siphon is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0009474 ! ascidian ampulla [Term] id: UBERON:0009476 name: madreporite def: "The madreporite is an opening used to filter water into the water vascular system of echinoderms. It is visible as a small red or yellow button-like structure, looking like a small wart, on the aboral surface of the central disk of a sea star. Close up, it is visibly structured, resembling a 'madrepore' colony. From this, it derives its name. The water vascular system of the sea star consists of a series of seawater-filled ducts that function in locomotion and feeding and respiration. Its main parts are the madreporite, the stone canal, the ring canal, the radial canals, the lateral canals, and the tube feet. The sieve-like madreporite allows entry of seawater into the stone canal, which connects to the ring canal around the mouth. Five or more radial canals extend from the ring canal, one in each arm above the ambulacral groove. From the radial canals extend many lateral canals, each of which leads to a tube foot. Each tube foot is a closed cylinder with muscular walls, having a sucker at the outer end and a bulb-like ampulla at its inner end within the body cavity." [Wikipedia:Madreporite] xref: Wikipedia:Madreporite is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system relationship: part_of UBERON:0008259 ! aboral subdivision of organism [Term] id: UBERON:0009477 name: associated mesenchyme of otic placode def: "Mesenchyme that is part of a otic placode." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0001340 xref: EMAPA:16196 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0003069 ! otic placode [Term] id: UBERON:0009478 name: associated mesenchyme of midgut def: "Mesenchyme that is part of a developing midgut." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "early midgut associated mesenchyme" EXACT [EHDAA2:0001186] xref: EHDAA2:0001186 xref: EMAPA:16256 is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0010378 {source="EHDAA2"} ! mesenchyme from splanchnopleure relationship: part_of UBERON:0001045 ! midgut property_value: editor_note "previously logically defined as mesenchyme of midgut, but this caused disjointness violations between dense and loose mesenchyme" xsd:string [Term] id: UBERON:0009479 name: ectoderm of buccopharyngeal membrane def: "An ectoderm that is part of a buccopharyngeal membrane." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000190 xref: EMAPA:16260 is_a: UBERON:0000924 ! ectoderm relationship: part_of UBERON:0006211 ! buccopharyngeal membrane [Term] id: UBERON:0009480 name: endoderm of buccopharyngeal membrane def: "An endoderm that is part of a buccopharyngeal membrane." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000191 xref: EMAPA:16261 is_a: UBERON:0000925 ! endoderm relationship: part_of UBERON:0006211 ! buccopharyngeal membrane [Term] id: UBERON:0009481 name: cavity of pericardio-peritoneal canal def: "A tube lumen that is part of a pericardio-peritoneal canal." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "cavity of the pericardio-peritoneal canal" EXACT [VHOG:0000564] xref: EHDAA2:0001441 xref: EMAPA:16283 xref: VHOG:0000564 is_a: UBERON:0005082 ! tube lumen relationship: part_of UBERON:0006275 ! pericardio-peritoneal canal [Term] id: UBERON:0009482 name: associated mesenchyme of foregut-midgut junction def: "Mesenchyme that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000570 xref: EMAPA:16364 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009483 name: mesentery of foregut-midgut junction def: "A mesentery that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "foregut-midgut junction mesentery" EXACT [VHOG:0000430] xref: EHDAA2:0000575 xref: EMAPA:16365 xref: VHOG:0000430 is_a: UBERON:0002095 ! mesentery relationship: part_of UBERON:0006235 ! foregut-midgut junction property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000430", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009484 name: dorsal mesentery of mesentery of foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA2:0000571 xref: EMAPA:16366 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction [Term] id: UBERON:0009494 name: pharyngeal arch mesenchymal region def: "A portion of mesenchymal tissue associated with an individual pharyngeal arch." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "branchial arch mesenchyme" EXACT [MP:0011262] synonym: "pharyngeal arch mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:32755 xref: FMA:295694 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: part_of UBERON:0002539 ! pharyngeal arch relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme property_value: editor_note "this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures." xsd:string {source="MP:0011262"} [Term] id: UBERON:0009495 name: extrahepatic part of biliary bud subset: emapa_ehdaa2 xref: EHDAA2:0000172 xref: EMAPA:16562 is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud [Term] id: UBERON:0009496 name: intrahepatic part of biliary bud subset: emapa_ehdaa2 xref: EHDAA2:0000173 xref: EMAPA:16563 is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud [Term] id: UBERON:0009497 name: epithelium of foregut-midgut junction def: "An epithelium that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000573 xref: EMAPA:16564 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0009550 {source="EHDAA2"} ! endoderm of foregut-midgut junction relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009499 name: parietal of mesothelium of pericardio-peritoneal canal subset: emapa_ehdaa2 xref: EHDAA2:0001409 xref: EMAPA:16590 is_a: UBERON:0007185 ! pericardio-peritoneal canal mesothelium relationship: part_of UBERON:0007185 ! pericardio-peritoneal canal mesothelium [Term] id: UBERON:0009500 name: periotic mesenchyme def: "Anatomical region that surrounds the otic vesicle." [PMID:3794595, XAO:0004474, XAO:curators] subset: emapa_ehdaa2 synonym: "otocyst associated mesenchyme" EXACT [EHDAA2:0001343] synonym: "otocyst mesenchyme" EXACT [EMAPA:16670] synonym: "periotic region" RELATED [XAO:0004474] xref: EHDAA2:0001343 xref: EMAPA:16670 xref: XAO:0004474 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest relationship: develops_from UBERON:0009477 {source="EHDAA2"} ! associated mesenchyme of otic placode relationship: part_of UBERON:0001444 {source="XAO"} ! subdivision of head [Term] id: UBERON:0009501 name: mesenchyme of fronto-nasal process def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head." [MP:0011266] subset: emapa_ehdaa2 subset: pheno_slim synonym: "frontonasal mesenchyme" EXACT [MP:0011266] synonym: "naso-frontal mesenchyme" EXACT [MP:0011266] xref: EHDAA2:0004109 xref: EMAPA:16683 xref: FMA:295821 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0004066 ! frontonasal prominence [Term] id: UBERON:0009502 name: ventral mesentery of mesentery of foregut-midgut junction subset: emapa_ehdaa2 xref: EMAPA:16714 xref: RETIRED_EHDAA2:0000576 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction [Term] id: UBERON:0009503 name: mesenchyme of hindgut def: "Mesenchyme that is part of a developing hindgut." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "hindgut associated mesenchyme" EXACT [EHDAA2:0000780] xref: EHDAA2:0000780 xref: EMAPA:16716 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0009504 name: mesenchyme of main bronchus def: "Mesenchyme that is part of a developing main bronchus." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "main bronchus associated mesenchyme" EXACT [EHDAA2:0001045] synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] xref: EHDAA2:0001045 xref: EMAPA:16850 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0009505 name: mesenchyme of trachea def: "Mesenchyme that is part of a developing trachea." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "trachea associated mesenchyme" EXACT [EHDAA2:0002067] xref: EHDAA2:0002067 xref: EMAPA:16854 is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0002539 ! pharyngeal arch relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0009506 name: mesenchyme of middle ear def: "Mesenchyme that is part of a developing middle ear." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "middle ear associated mesenchyme" EXACT [EHDAA2:0001182] synonym: "otic mesenchyme" BROAD [] xref: EHDAA2:0001182 xref: EMAPA:17001 is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: part_of UBERON:0001756 ! middle ear property_value: external_ontology_notes "Also 1st arch maxillary mesenchyme in EHDAA2" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0009521 name: anal membrane endodermal component def: "An endoderm that is part of a anal region." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0004020 xref: EMAPA:17177 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0009522 name: lateral lingual swelling epithelium def: "An epithelium that is part of a lateral lingual swelling." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000913 xref: EMAPA:17190 xref: FMA:313717 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0006757 ! lateral lingual swelling [Term] id: UBERON:0009523 name: mesenchyme of handplate def: "Mesenchyme that is part of a handplate." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "hand plate mesenchyme" EXACT [] synonym: "handplate mesenchyme" EXACT [EHDAA2:0000731] xref: EHDAA2:0000731 xref: EMAPA:17248 xref: EMAPA:17457 is_a: UBERON:0010377 ! mesenchyme from somatopleure relationship: develops_from UBERON:0003413 {source="EHDAA2"} ! pectoral appendage bud mesenchyme relationship: part_of UBERON:0006875 ! embryonic handplate property_value: external_ontology_notes "We group two EMAPA classes here but these may need to be separated" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0009526 name: maxillary process mesenchyme def: "Mesenchyme that is part of a maxillary prominence." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "mesenchyme of maxillary process" EXACT [EMAPA:17361] synonym: "mesenchyme of maxillary prominence" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0001071 xref: EMAPA:17361 xref: FMA:312691 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005868 ! maxillary prominence [Term] id: UBERON:0009536 name: vascular element of left lung def: "A vascular plexus that is part of a left lung." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000963 xref: EMAPA:17660 is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0009537 name: vascular element of right lung def: "A vascular plexus that is part of a right lung." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0001757 xref: EMAPA:17668 is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0009538 name: mesenchyme of sublingual gland primordium def: "Mesenchyme that is part of a sublingual gland primordium." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0001937 xref: EMAPA:17754 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003324 ! mesenchyme of lower jaw relationship: part_of UBERON:0006297 ! sublingual gland primordium [Term] id: UBERON:0009539 name: mesenchyme of submandibular gland primordium def: "Mesenchyme that is part of a submandibular gland primordium." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "submaxillary gland primordium mesenchyme" RELATED [EMAPA:17757] xref: EHDAA2:0001941 xref: EMAPA:17757 is_a: UBERON:0003324 ! mesenchyme of lower jaw is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003324 ! mesenchyme of lower jaw relationship: part_of UBERON:0006298 ! submandibular gland primordium [Term] id: UBERON:0009548 name: hepatic sinusoid of left of lobe of liver def: "A hepatic sinusoid that is part of a left lobe of liver." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "left lobe hepatic sinusoids" EXACT [VHOG:0000709] xref: EHDAA2:0001001 xref: EMAPA:18309 xref: VHOG:0000709 is_a: UBERON:0001281 ! hepatic sinusoid relationship: part_of UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0009549 name: hepatic sinusoid of right of lobe of liver def: "A hepatic sinusoid that is part of a right lobe of liver." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "right lobe hepatic sinusoids" EXACT [VHOG:0000710] xref: EHDAA2:0001009 xref: EMAPA:18316 xref: VHOG:0000710 is_a: UBERON:0001281 ! hepatic sinusoid relationship: part_of UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0009550 name: endoderm of foregut-midgut junction def: "An endoderm that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000572 xref: EMAPA:18403 is_a: UBERON:0000925 ! endoderm relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009551 name: distal segment of digit def: "A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [DOI:10.1038/nature10346] synonym: "digit tip" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "distal digit segment" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tip of digit" EXACT [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002544 ! digit property_value: development_notes "Newborn and adult mice are able to regrow forelimb (finger) and hindlimb (toe) digit tips after their amputation through the distal interphalangeal joint. Regeneration of the digit tip involves the integrated regrowth of multiple tissues within 2-3 months, reaching an external morphology that is cosmetically and functionally similar to normal digits. Most importantly, regeneration of the mouse distal digit shares morphological similarities with clinical cases documenting regrowth of missing distal portions of fingers in both children and adults" xsd:string [Term] id: UBERON:0009552 name: distal segment of manual digit alt_id: UBERON:0004093 def: "A segment of the manual digit containing the distal phalanx." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "finger digit tip" EXACT [DOI:10.1038/nature10346] synonym: "finger distal segment" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "finger tip" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "fingertip" EXACT [HP:0001211] synonym: "forelimb digit tip" EXACT [DOI:10.1038/nature10346] synonym: "tip of finger" EXACT [] xref: SCTID:312543003 is_a: UBERON:0005451 ! segment of manus is_a: UBERON:0009551 ! distal segment of digit relationship: part_of UBERON:0002389 ! manual digit [Term] id: UBERON:0009553 name: distal segment of pedal digit def: "A segment of the pedal digit containing the distal phalanx. Note this class represents a digit segment and thus includes tissues in addition to bone." [http://orcid.org/0000-0002-6601-2165] synonym: "distalmost part of toe" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "hindlimb digit tip" EXACT [DOI:10.1038/nature10346] synonym: "P3 segment of pedal digit" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "tip of toe" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "toe digit tip" EXACT [DOI:10.1038/nature10346] synonym: "toe distal segment" EXACT [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0005445 ! segment of pes is_a: UBERON:0009551 ! distal segment of digit relationship: part_of UBERON:0001466 ! pedal digit [Term] id: UBERON:0009554 name: obsolete coffin bone def: "The bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint." [Wikipedia:Coffin_bone] comment: Was made obsolete in favor of the more generic grouping is_obsolete: true replaced_by: UBERON:0014485 [Term] id: UBERON:0009555 name: short pastern bone def: "The middle phalanx of digit 3 in a horse." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pastern] synonym: "equine middle phalanx" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "equine phalanx 2" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "equine phalanx 2 of digit III" EXACT [https://orcid.org/0000-0002-6601-2165] xref: SCTID:370730008 is_a: UBERON:0009558 ! pastern bone is_a: UBERON:0014489 ! middle phalanx of digit 3 property_value: editor_note "in future this may be merged into a species-neutral phalanx 2 digit III" xsd:string [Term] id: UBERON:0009556 name: long pastern bone def: "The proximal phalanx of digit 3 in a horse." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pastern] synonym: "equine phalanx 1 of digit III" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "equine proximal phalanx" EXACT [https://orcid.org/0000-0002-6601-2165] xref: SCTID:370733005 is_a: UBERON:0009558 ! pastern bone is_a: UBERON:0014503 ! proximal phalanx of digit 3 property_value: editor_note "in future this may be merged into a species-neutral phalanx 1 digit III" xsd:string [Term] id: UBERON:0009557 name: obsolete coffin joint is_obsolete: true replaced_by: UBERON:0009768 [Term] id: UBERON:0009558 name: pastern bone def: "A bone that is part of the pastern region of a horse limb. i.e. proximal or middle (P1 or P2) phalanges in digit 3." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pastern] xref: Wikipedia:Pastern is_a: UBERON:0003221 ! phalanx relationship: part_of UBERON:0009563 ! pastern region of limb property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/Equine-dist-forelimb-bones.png" xsd:anyURI property_value: editor_note "in future this may be merged into a more species-neutral class" xsd:string [Term] id: UBERON:0009559 name: metacarpal/tarsal-phalangeal joint def: "A skeletal joint that connects a mesopodium bone and connects a proximal phalanx." [OBOL:automatic] synonym: "fetlock" NARROW SENSU [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788, Wikipedia:Fetlock] synonym: "metacarpo-tarsophalangeal joint" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "metapodial-phalangeal joint" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "metapodium-phalanx joint" EXACT [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003841 ! autopod joint is_a: UBERON:0011139 ! synovial limb joint relationship: part_of UBERON:0002544 ! digit property_value: editor_note "We include these joints as being part of the digits; this is consistent with the FMA, and makes classification easier. Note that digit and metapodial regions are part-disjoint" xsd:string [Term] id: UBERON:0009563 name: pastern region of limb def: "A part of the leg of a horse between the fetlock and the top of the hoof. It incorporates the long pastern bone (proximal phalanx) and the short pastern bone (middle phalanx), which are held together by two sets of paired ligaments to form the pastern joint (proximal interphalangeal joint)." [Wikipedia:Pastern] xref: SCTID:370725009 xref: Wikipedia:Pastern is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0006050 ! digit 3 property_value: editor_note "in future this may be merged into a more species-neutral class for the distal and medial segments of a digit." xsd:string [Term] id: UBERON:0009564 name: distal limb integumentary appendage def: "A nail, hoof or claw." [PMID:11710767] synonym: "hoof or claw" RELATED [] synonym: "hoof, claw or nail" RELATED [] synonym: "keratin plate" RELATED [] synonym: "keratin sheath" RELATED [] synonym: "unguis" RELATED [] xref: MESH:D006724 is_a: UBERON:0013703 ! integumentary projection relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0009551 {source="cjm"} ! distal segment of digit [Term] id: UBERON:0009565 name: nail of manual digit def: "A nail that is part of a manual digit." [OBOL:automatic] subset: pheno_slim synonym: "claw of hand" NARROW SENSU [] synonym: "claw of manus" NARROW SENSU [] synonym: "finger nail" EXACT [FMA:54327] synonym: "fingernail" EXACT [FMA:54327] synonym: "forelimb digit claw" NARROW SENSU [EMAPA:35349] synonym: "manual claw" NARROW SENSU [] synonym: "nail of finger" EXACT [FMA:54327] synonym: "nail plate of finger" RELATED [FMA:54327] xref: EMAPA:35349 xref: FMA:54327 xref: NCIT:C32609 xref: SCTID:244197001 xref: UMLS:C0222001 {source="ncithesaurus:Fingernail"} is_a: UBERON:0001705 ! nail relationship: part_of UBERON:0005276 {source="FMA"} ! dorsal skin of finger relationship: part_of UBERON:0009552 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! distal segment of manual digit [Term] id: UBERON:0009566 name: intestinal submucosa def: "A submucosa that is part of a intestine." [OBOL:automatic] synonym: "submucosa of intestine" EXACT [FMA:15696] xref: FMA:15696 is_a: UBERON:0018257 ! submucosa of digestive tract relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine [Term] id: UBERON:0009567 name: nail of pedal digit def: "A nail that is part of a pedal digit." [OBOL:automatic] subset: pheno_slim synonym: "claw of foot" NARROW SENSU [] synonym: "claw of pes" NARROW SENSU [] synonym: "claw of toe" NARROW SENSU [] synonym: "hindlimb claw" NARROW SENSU [EMAPA:36457] synonym: "hindlimb digit claw" NARROW SENSU [] synonym: "nail of pes" EXACT [] synonym: "nail of toe" EXACT [FMA:54328] synonym: "nail plate of toe" RELATED [FMA:54328] synonym: "pedal claw" NARROW SENSU [] synonym: "toe nail" EXACT [FMA:54328] synonym: "toenail" EXACT [FMA:54328] xref: EMAPA:36457 xref: FMA:54328 xref: NCIT:C33790 xref: SCTID:244198006 xref: UMLS:C0222007 {source="ncithesaurus:Toe_Nail"} xref: XAO:0003103 is_a: UBERON:0001705 ! nail relationship: part_of UBERON:0005277 {source="FMA"} ! dorsal skin of toe relationship: part_of UBERON:0009553 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! distal segment of pedal digit [Term] id: UBERON:0009568 name: trunk region of vertebral column def: "Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. In organisms that have a thoracic and lumbar distinction, this corresponds to the sum of both of these regions." [UBERONREF:0000006] subset: pheno_slim synonym: "presacral region" RELATED [AAO:0000612] synonym: "thoracolumbar column" EXACT [] synonym: "thoracolumbar region" RELATED [AAO:0000612] synonym: "thoracolumbar region of vertebral column" EXACT [] synonym: "thoracolumbar vertebrae set" EXACT [FMA:72066] synonym: "thoracolumbar vertebral column" EXACT [] synonym: "trunk region" RELATED [AAO:0000612] synonym: "trunk skeleton" RELATED [] synonym: "trunk spine" RELATED [] synonym: "trunk vertebrae series" EXACT [] synonym: "trunk vertebral column" EXACT [] xref: FMA:72066 xref: NCIT:C92597 xref: SCTID:281699004 is_a: UBERON:0006077 ! subdivision of vertebral column relationship: part_of UBERON:0002100 ! trunk property_value: external_definition "Region of the vertebral column between the atlas and the sacrum consisting of seven to 285 vertebrae.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000612", ontology="AAO", source="AAO:Duellman_and_Trueb_1994"} [Term] id: UBERON:0009569 name: subdivision of trunk subset: non_informative synonym: "region of trunk" EXACT [FMA:25054] synonym: "trunk subdivision" EXACT [FMA:25054] xref: FMA:25054 xref: SCTID:22943007 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0009570 name: spinal cord sulcus limitans def: "A sulcus limitans of neural tube that is part of a future spinal cord." [OBOL:automatic] synonym: "spinal cord lateral wall sulcus limitans" EXACT [EHDAA2:0001265] xref: EHDAA2:0001265 xref: EMAPA:17584 xref: VHOG:0001548 is_a: UBERON:0005478 ! sulcus limitans of neural tube relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0009571 name: ventral midline def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] xref: FBbt:00000093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0009572 name: lumen of central canal of spinal cord def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal] synonym: "cavity of central canal of spinal cord" EXACT [FMA:242845] synonym: "central canal lumen" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "neural lumen" RELATED [] synonym: "spinal cord lumen" EXACT [EMAPA:25042] xref: EMAPA:25042 xref: FMA:242845 xref: Wikipedia:Central_canal is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002291 ! central canal of spinal cord relationship: transformation_of UBERON:0003842 ! neural tube lumen [Term] id: UBERON:0009573 name: sulcus limitans of fourth ventricle def: "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP]." [Wikipedia:Sulcus_limitans] synonym: "s. limitans fossae rhomboideae" RELATED OMO:0003011 [Wikipedia:Sulcus_limitans] synonym: "sulcus limitans" BROAD [FMA:78496] xref: BAMS:slim xref: BAMS:slm xref: DHBA:12823 xref: FMA:78496 xref: NCIT:C33656 xref: neuronames:629 xref: UMLS:C0262332 {source="ncithesaurus:Sulcus_Limitans"} xref: Wikipedia:Sulcus_limitans is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002422 ! fourth ventricle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png" xsd:anyURI [Term] id: UBERON:0009576 name: medulla oblongata sulcus limitans def: "A sulcus limitans of neural tube that is part of a future medulla oblongata." [OBOL:automatic] xref: EHDAA2:0001100 xref: EMAPA:17561 is_a: UBERON:0005478 ! sulcus limitans of neural tube relationship: develops_from UBERON:0009578 {source="EHDAA2"} ! myelencephalon sulcus limitans relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0009577 name: metencephalon sulcus limitans def: "A sulcus limitans of neural tube that is part of a future metencephalon." [OBOL:automatic] xref: EHDAA2:0001161 xref: EMAPA:17567 is_a: UBERON:0005478 ! sulcus limitans of neural tube relationship: part_of UBERON:0010092 ! future metencephalon [Term] id: UBERON:0009578 name: myelencephalon sulcus limitans def: "A sulcus limitans of neural tube that is part of a future myelencephalon." [OBOL:automatic] xref: EHDAA2:0001945 is_a: UBERON:0005478 ! sulcus limitans of neural tube relationship: part_of UBERON:0010096 ! future myelencephalon [Term] id: UBERON:0009579 name: myelencephalon basal plate synonym: "basal plate myelencephalon" EXACT [VHOG:0000322] synonym: "future myelencephalon basal plate" EXACT [EHDAA2:0000646] xref: EHDAA2:0000646 xref: EMAPA:17088 xref: VHOG:0000322 is_a: UBERON:0004064 ! neural tube basal plate property_value: editor_note "TODO - check EHDAA2 post-CNS-revision" xsd:string property_value: external_definition "The ventral half of the developing neural tube that is the myelencephalon. [Chordate_evolution_and_the_origin_of_craniates:_An_old_brain_in_a_new_head._AnaT_Rec_(New_Anat)_(2000)_261(3):_111-125, See_Butler_AB][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000322", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009580 name: diencephalon mantle layer synonym: "diencephalon lateral wall mantle layer" EXACT [] synonym: "mantle layer lateral wall diencephalon" EXACT [VHOG:0000912] xref: EHDAA2:0000397 xref: EMAPA:16906 xref: VHOG:0000912 is_a: UBERON:0004061 ! neural tube mantle layer relationship: part_of UBERON:0006222 ! future diencephalon [Term] id: UBERON:0009581 name: midbrain mantle layer synonym: "mantle layer lateral wall mesencephalon" RELATED [VHOG:0000910] synonym: "mantle layer lateral wall midbrain" EXACT [VHOG:0000910] synonym: "midbrain lateral wall mantle layer" EXACT [] xref: EHDAA2:0001172 xref: EMAPA:16977 xref: VHOG:0000910 is_a: UBERON:0004061 ! neural tube mantle layer relationship: part_of UBERON:0009616 ! presumptive midbrain [Term] id: UBERON:0009582 name: spinal cord lateral wall subset: efo_slim synonym: "lateral wall spinal cord" EXACT [ZFA:0000996] xref: EFO:0003602 xref: EMAPA:17579 xref: MA:0003192 xref: TAO:0000996 xref: ZFA:0000996 is_a: UBERON:0005496 ! neural tube lateral wall relationship: part_of UBERON:0002240 {source="EMAPA"} ! spinal cord [Term] id: UBERON:0009583 name: spinal cord mantle layer synonym: "mantle layer lateral wall spinal cord" EXACT [VHOG:0000911] synonym: "spinal cord lateral wall mantle layer" EXACT [] xref: EMAPA:17580 xref: VHOG:0000911 is_a: UBERON:0004061 ! neural tube mantle layer relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0009584 name: 1st arch mandibular mesenchyme alt_id: UBERON:0010043 def: "Mesenchyme that is part of a 1st arch mandibular component." [OBOL:automatic] synonym: "mandibular component mesenchyme" RELATED [] synonym: "mandibular mesenchyme" RELATED [] synonym: "mesenchymal region of mandibular component of first pharyngeal arch" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "mesenchyme of mandibular component" EXACT [EMAPA:16385] xref: EHDAA2:0000034 xref: EMAPA:16385 is_a: UBERON:0010042 ! 1st arch mesenchyme relationship: part_of UBERON:0007237 {source="EMAPA"} ! 1st arch mandibular component [Term] id: UBERON:0009585 name: interdigital region mesenchyme def: "Mesenchyme that is part of a developing interdigital region." [OBOL:automatic] comment: influences identity of anterior digit[Dahn and Fallon 2000], likely via BMP4 synonym: "interdigit mesenchyme" RELATED [] synonym: "interdigital mesenchyme" EXACT [] synonym: "mesenchyme of interdigital region" EXACT [] xref: EMAPA:32609 is_a: UBERON:0009749 ! limb mesenchyme relationship: part_of UBERON:0006012 ! interdigital region [Term] id: UBERON:0009586 name: mesenchyme of interdigital region between manual digits 1 and 2 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 1 and 2." [OBOL:automatic] synonym: "interdigital region between fingers 1 and 2 mesenchyme" EXACT [EHDAA2:0000846] synonym: "mesenchyme of interdigital region between manual digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000846 xref: EMAPA:17447 is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2 is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus relationship: part_of UBERON:0006026 {source="EMAPA"} ! interdigital region between manual digits 1 and 2 [Term] id: UBERON:0009587 name: mesenchyme of interdigital region between manual digits 2 and 3 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 2 and 3." [OBOL:automatic] synonym: "interdigital region between fingers 2 and 3 mesenchyme" EXACT [EHDAA2:0000849] synonym: "mesenchyme of interdigital region between manual digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000849 xref: EMAPA:17450 is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3 is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus relationship: part_of UBERON:0006029 {source="EMAPA"} ! interdigital region between manual digits 2 and 3 [Term] id: UBERON:0009588 name: mesenchyme of interdigital region between manual digits 3 and 4 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 3 and 4." [OBOL:automatic] synonym: "interdigital region between fingers 3 and 4 mesenchyme" EXACT [EHDAA2:0000852] synonym: "mesenchyme of interdigital region between manual digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000852 xref: EMAPA:17453 is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4 is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus relationship: part_of UBERON:0006032 {source="EMAPA"} ! interdigital region between manual digits 3 and 4 [Term] id: UBERON:0009589 name: mesenchyme of interdigital region between manual digits 4 and 5 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 4 and 5." [OBOL:automatic] synonym: "interdigital region between fingers 4 and 5 mesenchyme" EXACT [EHDAA2:0000855] synonym: "mesenchyme of interdigital region between manual digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000855 xref: EMAPA:17456 is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5 is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus relationship: part_of UBERON:0006035 {source="EMAPA"} ! interdigital region between manual digits 4 and 5 [Term] id: UBERON:0009590 name: mesenchyme of interdigital region between pedal digits 1 and 2 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 1 and 2." [OBOL:automatic] synonym: "interdigital region between toes 1 and 2 mesenchyme" EXACT [EHDAA2:0000858] synonym: "mesenchyme of interdigital region between pedal digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000858 xref: EMAPA:17478 is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2 is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes relationship: part_of UBERON:0006038 {source="EMAPA"} ! interdigital region between pedal digits 1 and 2 [Term] id: UBERON:0009591 name: mesenchyme of interdigital region between pedal digits 2 and 3 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 2 and 3." [OBOL:automatic] synonym: "interdigital region between toes 2 and 3 mesenchyme" EXACT [EHDAA2:0000861] synonym: "mesenchyme of interdigital region between pedal digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000861 xref: EMAPA:17481 is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3 is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes relationship: part_of UBERON:0006041 {source="EMAPA"} ! interdigital region between pedal digits 2 and 3 [Term] id: UBERON:0009592 name: mesenchyme of interdigital region between pedal digits 3 and 4 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 3 and 4." [OBOL:automatic] synonym: "interdigital region between toes 3 and 4 mesenchyme" EXACT [EHDAA2:0000864] synonym: "mesenchyme of interdigital region between pedal digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000864 xref: EMAPA:17484 is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4 is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes relationship: part_of UBERON:0006044 {source="EMAPA"} ! interdigital region between pedal digits 3 and 4 [Term] id: UBERON:0009593 name: mesenchyme of interdigital region between pedal digits 4 and 5 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 4 and 5." [OBOL:automatic] synonym: "interdigital region between toes 4 and 5 mesenchyme" EXACT [EHDAA2:0000867] synonym: "mesenchyme of interdigital region between pedal digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000867 xref: EMAPA:17487 is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5 is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes relationship: part_of UBERON:0006047 {source="EMAPA"} ! interdigital region between pedal digits 4 and 5 [Term] id: UBERON:0009596 name: mesenchyme of interdigital region between digits 1 and 2 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 1 and 2." [OBOL:automatic] synonym: "mesenchyme of interdigital region between digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme relationship: part_of UBERON:0006016 ! interdigital region between digits 1 and 2 [Term] id: UBERON:0009597 name: mesenchyme of interdigital region between digits 2 and 3 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 2 and 3." [OBOL:automatic] synonym: "mesenchyme of interdigital region between digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme relationship: part_of UBERON:0006019 ! interdigital region between digits 2 and 3 [Term] id: UBERON:0009598 name: mesenchyme of interdigital region between digits 3 and 4 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 3 and 4." [OBOL:automatic] synonym: "mesenchyme of interdigital region between digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme relationship: part_of UBERON:0006022 ! interdigital region between digits 3 and 4 [Term] id: UBERON:0009599 name: mesenchyme of interdigital region between digits 4 and 5 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 4 and 5." [OBOL:automatic] synonym: "mesenchyme of interdigital region between digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme relationship: part_of UBERON:0006025 ! interdigital region between digits 4 and 5 [Term] id: UBERON:0009600 name: mesenchyme of interdigital region of manus def: "An interdigital region mesenchyme that is part of a manus." [OBOL:automatic] synonym: "mesenchyme of interdigital region of forelimb" EXACT [] xref: EMAPA:32653 is_a: UBERON:0003859 ! forelimb mesenchyme is_a: UBERON:0009585 ! interdigital region mesenchyme relationship: part_of UBERON:0006013 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! interdigital region between manual digits [Term] id: UBERON:0009601 name: mesenchyme of interdigital region of pes def: "An interdigital region mesenchyme that is part of a pes." [OBOL:automatic] synonym: "mesenchyme of interdigital region of hindlimb" EXACT [] xref: EMAPA:32955 is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0009585 ! interdigital region mesenchyme relationship: part_of UBERON:0006014 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! interdigital region between pedal digits [Term] id: UBERON:0009602 name: left lung associated mesenchyme def: "Mesenchyme that is part of a developing left lung." [OBOL:automatic] synonym: "left lung mesenchyme" EXACT [EMAPA:17654] xref: EHDAA2:0000944 xref: EMAPA:16730 xref: EMAPA:17654 is_a: UBERON:0004883 ! lung mesenchyme relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0009603 name: right lung associated mesenchyme def: "Mesenchyme that is part of a developing right lung." [OBOL:automatic] synonym: "right lung mesenchyme" EXACT [EMAPA:17662] xref: EHDAA2:0001739 xref: EMAPA:17662 is_a: UBERON:0004883 ! lung mesenchyme relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0009610 name: forebrain neural plate def: "A neural plate that develops_from a future forebrain." [OBOL:automatic] xref: TAO:0007018 xref: ZFA:0007018 is_a: UBERON:0003075 ! neural plate relationship: develops_from UBERON:0006240 ! future forebrain relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate [Term] id: UBERON:0009611 name: midbrain neural plate def: "A neural plate that develops_from a presumptive midbrain." [OBOL:automatic] xref: TAO:0007019 xref: ZFA:0007019 is_a: UBERON:0003075 ! neural plate relationship: develops_from UBERON:0009616 ! presumptive midbrain relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate [Term] id: UBERON:0009612 name: forebrain midbrain boundary neural plate synonym: "diencephalic-mesencephalic boundary neural plate" EXACT [ZFA:0007020] xref: TAO:0007020 xref: ZFA:0007020 is_a: UBERON:0007651 {source="ZFA"} ! anatomical junction relationship: develops_from UBERON:0007288 {source="ZFA"} ! presumptive forebrain midbrain boundary relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate [Term] id: UBERON:0009614 name: hindbrain neural plate def: "A neural plate that develops_from a presumptive hindbrain." [OBOL:automatic] xref: TAO:0007022 xref: ZFA:0007022 is_a: UBERON:0003075 ! neural plate relationship: develops_from UBERON:0007277 ! presumptive hindbrain relationship: part_of UBERON:0003057 {source="ZFA"} ! chordal neural plate [Term] id: UBERON:0009615 name: midbrain hindbrain boundary neural plate synonym: "MHB neural plate" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044] xref: TAO:0007044 xref: ZFA:0007044 is_a: UBERON:0006598 ! presumptive structure relationship: immediate_transformation_of UBERON:0007281 {notes="https://github.com/obophenotype/uberon/issues/438", source="Bgee:AN"} ! presumptive midbrain hindbrain boundary relationship: part_of UBERON:0003075 {source="ZFA"} ! neural plate property_value: editor_note "TODO - developmental relationships for lines" xsd:string [Term] id: UBERON:0009616 name: presumptive midbrain def: "A presumptive structure that has the potential to develop into a midbrain." [OBOL:automatic] subset: efo_slim synonym: "early midbrain" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "future midbrain" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "mesencephalon" RELATED [EHDAA2:0000615] synonym: "presumptive mesencephalon" EXACT [ZFA:0000148] xref: BAMS:MES xref: EFO:0003432 xref: EHDAA2:0000615 xref: EMAPA:16140 xref: TAO:0000148 xref: Wikipedia:Mesencephalon xref: ZFA:0000148 is_a: UBERON:0006598 ! presumptive structure relationship: develops_from UBERON:0003080 ! anterior neural tube relationship: develops_from UBERON:0010286 {source="ZFA"} ! midbrain neural tube relationship: part_of UBERON:0006238 {source="ZFA"} ! future brain property_value: editor_note "TODO - unify naming conventions" xsd:string [Term] id: UBERON:0009617 name: head paraxial mesoderm def: "Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022] synonym: "cephalic paraxial mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "cephalic paraxial mesoderm" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "cranial paraxial mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "cranial paraxial mesoderm" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "head paraxial mesenchyme" EXACT [EHDAA2:0000736, https://github.com/obophenotype/uberon/issues/30] synonym: "somitomere" RELATED [] synonym: "somitomeric mesoderm" RELATED [] xref: EHDAA2:0000736 xref: EHDAA:364 xref: EMAPA:16171 is_a: UBERON:0005253 ! head mesenchyme relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005253 {source="EHDAA2"} ! head mesenchyme property_value: development_notes "A major contributor to neurocranium [PMID:16313393]" xsd:string [Term] id: UBERON:0009618 name: trunk paraxial mesoderm synonym: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094] synonym: "trunk paraxial mesenchyme" RELATED [https://github.com/obophenotype/uberon/issues/30] xref: EHDAA2:0002094 is_a: UBERON:0005256 ! trunk mesenchyme relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme [Term] id: UBERON:0009620 name: tail bud paraxial mesoderm xref: EHDAA2:0003239 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0009618 {source="EHDAA2"} ! trunk paraxial mesoderm relationship: part_of UBERON:0002533 {source="EHDAA2"} ! post-anal tail bud relationship: part_of UBERON:0003077 ! paraxial mesoderm [Term] id: UBERON:0009621 name: tail somite def: "A somite that is part of a tail." [OBOL:automatic] xref: AAO:0010383 xref: EMAPA:16860 xref: XAO:0003143 is_a: UBERON:0002329 ! somite relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:0009622 name: pronephric proximal straight tubule def: "A proximal straight tubule that is part of a pronephros." [ZFIN:ZDB-PUB-071029-9] synonym: "proximal straight tubules" RELATED OMO:0003004 [TAO:0002239] xref: TAO:0002239 xref: ZFA:0001621 is_a: UBERON:0001290 ! proximal straight tubule is_a: UBERON:0005310 ! pronephric nephron tubule relationship: part_of UBERON:0006173 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! pronephric proximal tubule [Term] id: UBERON:0009623 name: spinal nerve root def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A08.800.800.720.725] subset: human_reference_atlas synonym: "root of spinal nerve" EXACT [FMA:14060] synonym: "spinal neural root" EXACT [FMA:14060] synonym: "spinal root" EXACT [BTO:0000883] xref: BTO:0000883 xref: DHBA:146035120 xref: FMA:14060 xref: GAID:717 xref: MESH:D013126 xref: NCIT:C12791 xref: UMLS:C0037940 {source="ncithesaurus:Spinal_Nerve_Root"} xref: ZFA:0005578 is_a: UBERON:0002211 {source="FMA"} ! nerve root relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS)" xsd:string {external_ontology="ZFA"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd:string [Term] id: UBERON:0009624 name: lumbar nerve def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves] subset: human_reference_atlas synonym: "lumbar spinal nerve" EXACT [FMA:5861] synonym: "nervi lumbales" RELATED OMO:0003011 [Wikipedia:Lumbar_nerves] synonym: "nervus lumbalis" EXACT OMO:0003011 [FMA:5861, FMA:TA] xref: FMA:5861 xref: NCIT:C33015 xref: neuronames:1730 xref: SCTID:361600002 xref: UMLS:C0228897 {source="ncithesaurus:Lumbar_Nerve"} xref: Wikipedia:Lumbar_nerves is_a: UBERON:0001780 ! spinal nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] id: UBERON:0009625 name: sacral nerve def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves] subset: human_reference_atlas synonym: "nervi sacrales" RELATED OMO:0003011 [Wikipedia:Sacral_nerves] synonym: "nervus sacralis" EXACT OMO:0003011 [FMA:5862, FMA:TA] synonym: "sacral spinal nerve" EXACT [FMA:5862] xref: FMA:5862 xref: NCIT:C33505 xref: neuronames:1720 xref: SCTID:361601003 xref: UMLS:C0228922 {source="ncithesaurus:Sacral_Nerve"} xref: Wikipedia:Sacral_nerves is_a: UBERON:0001780 ! spinal nerve relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] id: UBERON:0009629 name: coccygeal nerve def: "The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone." [Wikipedia:Coccygeal_nerve] synonym: "coccygeal spinal nerve" EXACT [FMA:5863] synonym: "nervus coccygeus" RELATED OMO:0003011 [Wikipedia:Coccygeal_nerve] xref: FMA:5863 xref: NCIT:C32333 xref: neuronames:2369 xref: SCTID:287477006 xref: UMLS:C0228967 {source="ncithesaurus:Coccygeal_Nerve"} xref: Wikipedia:Coccygeal_nerve is_a: UBERON:0001780 ! spinal nerve is_a: UBERON:0015212 ! lateral structure property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] id: UBERON:0009630 name: root of thoracic nerve def: "A spinal nerve root that is part of a thoracic nerve." [OBOL:automatic] synonym: "nerve root part of thoracic spinal cord" EXACT [NIF:NIF] synonym: "thoracic nerve root" EXACT [FMA:14064] synonym: "thoracic neural root" EXACT [FMA:14064] xref: BIRNLEX:836 xref: FMA:14064 is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009631 name: root of lumbar spinal nerve def: "A spinal nerve root that is part of a lumbar nerve." [OBOL:automatic] synonym: "lumbar spinal nerve root" EXACT [FMA:16421] synonym: "lumbar spinal neural root" EXACT [FMA:16421] synonym: "nerve root part of lumbar spinal cord" EXACT [NIF:NIF] xref: BIRNLEX:1613 xref: FMA:16421 xref: NCIT:C12924 xref: SCTID:180968005 xref: UMLS:C0581666 {source="ncithesaurus:Lumbar_Spinal_Nerve_Root"} is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009632 name: root of cervical nerve synonym: "cervical neural root" EXACT [FMA:16422] synonym: "cervical spinal root" EXACT [FMA:16422] synonym: "nerve root part of cervical spinal cord" EXACT [NIF:NIF] synonym: "root of cervical spinal nerve" EXACT [FMA:16422] xref: BIRNLEX:955 xref: FMA:16422 xref: NCIT:C12893 xref: SCTID:180966009 xref: UMLS:C0581631 {source="ncithesaurus:Cervical_Spinal_Nerve_Root"} is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009633 name: root of sacral nerve def: "A spinal nerve root that is part of a sacral nerve." [OBOL:automatic] synonym: "nerve root part of sacral spinal cord" EXACT [NIF:NIF] synonym: "root of sacral spinal nerve" EXACT [FMA:18028] synonym: "sacral neural root" EXACT [FMA:18028] xref: BIRNLEX:1518 xref: FMA:18028 xref: NCIT:C12925 xref: SCTID:244454000 xref: UMLS:C0581672 {source="ncithesaurus:Sacral_Spinal_Nerve_Root"} is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009634 name: root of coccygeal nerve def: "A spinal nerve root that is part of a coccygeal nerve." [OBOL:automatic] synonym: "coccygeal neural root" EXACT [FMA:18131] synonym: "coccygeal spinal nerve root" EXACT [FMA:18131] synonym: "root of coccygeal spinal nerve" EXACT [FMA:18131] xref: FMA:18131 is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009635 name: parachordal cartilage def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [https://orcid.org/0000-0002-6601-2165, ISBN:1588903958] synonym: "parachordal cartilages" EXACT OMO:0003004 [ZFA:0001423] xref: NCIT:C34243 xref: TAO:0001423 xref: UMLS:C1518887 {source="ncithesaurus:Parachordal_Cartilage"} xref: ZFA:0001423 is_a: UBERON:0003932 {source="ZFA"} ! cartilage element of chondrocranium property_value: external_definition "Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001423", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0009636 name: prechordal cartilage def: "Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid." [https://orcid.org/0000-0002-6601-2165, ISBN:1588903958] comment: classified as part of chondrocranium based on developmental relationships is_a: UBERON:0003932 ! cartilage element of chondrocranium [Term] id: UBERON:0009637 name: alisphenoid ossification center synonym: "alisphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center [Term] id: UBERON:0009638 name: orbitosphenoid ossification center comment: merge with sphenoid lesser wing cartilage element? synonym: "orbitosphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center [Term] id: UBERON:0009639 name: body of sphenoid def: "The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum." [Wikipedia:Body_of_sphenoid_bone] synonym: "body of sphenoidal bone" EXACT [FMA:52867] synonym: "central body of sphenoid" EXACT [FMA:52867] synonym: "corpus (os sphenoidale)" EXACT [FMA:52867] synonym: "corpus ossis sphenoidalis" RELATED OMO:0003011 [Wikipedia:Body_of_sphenoid_bone] synonym: "Entire body of sphenoid bone" EXACT [] synonym: "sphenoid body" EXACT [FMA:52867] xref: FMA:52867 xref: SCTID:140491003 xref: Wikipedia:Body_of_sphenoid_bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0009636 {source="ISBN:1588903958"} ! prechordal cartilage relationship: develops_from UBERON:0009640 {source="ISBN:1588903958"} ! hypophyseal cartilage relationship: part_of UBERON:0001677 {source="FMA"} ! sphenoid bone relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d5/Gray146.png" xsd:anyURI [Term] id: UBERON:0009640 name: hypophyseal cartilage def: "Forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone." [ISBN:1588903958] comment: classified as part of chondrocranium based on developmental relationships is_a: UBERON:0003932 ! cartilage element of chondrocranium [Term] id: UBERON:0009641 name: ansa lenticularis def: "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus." [Wikipedia:Ansa_lenticularis] synonym: "ansa lenticularis in thalamo" EXACT OMO:0003011 [FMA:TA] synonym: "ansa lenticularis in thalamus" EXACT [FMA:62070] synonym: "ventral peduncle of lateral forebrain bundle" EXACT [FMA:62070] xref: BAMS:al xref: DHBA:10571 xref: FMA:62070 xref: HBA:9237 xref: neuronames:444 xref: NLXANAT:1010011 xref: SCTID:37467007 xref: Wikipedia:Ansa_lenticularis is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001900 {source="FMA"} ! ventral thalamus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/DA-loops_in_PD.jpg" xsd:anyURI [Term] id: UBERON:0009643 name: central tegmental tract def: "A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info)." [NLXANAT:1010012] xref: BAMS:ctg xref: DHBA:12730 xref: FMA:83850 xref: HBA:12952 xref: neuronames:2204 xref: NLXANAT:1010012 xref: SCTID:369034000 xref: Wikipedia:Central_tegmental_tract is_a: UBERON:0007702 {source="FMA"} ! tract of brain property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Midbrainsuperiorcolliculus.png" xsd:anyURI property_value: external_definition "The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum[Wikipedia:Central_tegmental_tract]." xsd:string {source="Wikipedia:Central_tegmental_tract"} [Term] id: UBERON:0009644 name: trachea non-cartilage connective tissue subset: human_reference_atlas xref: EMAPA:35878 xref: MA:0001859 is_a: UBERON:0003571 {source="MA"} ! trachea connective tissue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009645 name: ampullary gland def: "A paired accessory, glandular, androgen-dependent outpouchings of the proximal ductus deferens, one on each side, that produce and secrete lipids and glycogen, components of the seminal fluid; they open into the ampullae at the level of the colliculus seminalis, are lined by simple columnar epithelium with large, oval nuclei, and may be distinguished from those of the prostate as they are surrounded by a characteristic, dense, fibromuscular stroma." [MP:0013323] subset: pheno_slim synonym: "ampulla of the vas" EXACT [] synonym: "ampullae of the vas" EXACT OMO:0003004 [] synonym: "ampullary gland of seminal duct" EXACT [] xref: EMAPA:35123 xref: MA:0000400 xref: NCIT:C77955 xref: UMLS:C2698103 {source="ncithesaurus:Ampullary_Gland"} is_a: UBERON:0005399 {source="MA"} ! male reproductive gland relationship: never_in_taxon NCBITaxon:9606 {source="MP"} relationship: part_of UBERON:0001000 ! vas deferens property_value: structure_notes "usually encapsulated by connective tissue and containing smooth muscle" xsd:string property_value: taxon_notes "Ampullary glands are situated in an ampulla-like enlargement of the seminal duct, or embedded in the latter; they are present, eg in the Shrew, Ruminants, and certain Carnivores and Rodents. (Wiedersheim et al., 1907)" xsd:string {source="MorphoBank"} property_value: taxon_notes "there is no known human counterpart to the ampullary glands of the mouse[MP]" xsd:string [Term] id: UBERON:0009646 name: lumbar sympathetic nerve trunk def: "A sympathetic nerve trunk that is part of a lower back." [OBOL:automatic] synonym: "lumbar part of sympathetic trunk" RELATED [FMA:6263] synonym: "lumbar sympathetic chain" RELATED [FMA:6263] synonym: "lumbar sympathetic trunk" EXACT [FMA:6263] xref: EMAPA:37655 {source="MA:th"} xref: FMA:6263 xref: MA:0001163 xref: NCIT:C52828 xref: SCTID:280534006 xref: UMLS:C1708762 {source="ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk"} is_a: UBERON:0004295 ! sympathetic nerve trunk relationship: part_of UBERON:0005462 ! lower back [Term] id: UBERON:0009647 name: tympanic membrane epithelium def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)." [https://orcid.org/0000-0002-6601-2165, PMID:11237469] synonym: "tympanic epithelium" EXACT [MA:0001224] synonym: "tympanic membrane epithelial layer" EXACT [] xref: EMAPA:19064 xref: MA:0001224 xref: NCIT:C49308 xref: SCTID:70839004 xref: UMLS:C1711401 {source="ncithesaurus:Tympanic_Epithelium"} is_a: UBERON:0010071 ! layer of tympanic membrane is_a: UBERON:0015813 ! middle ear epithelium [Term] id: UBERON:0009648 name: eyelid subcutaneous connective tissue def: "An eyelid connective tissue that is part of a hypodermis." [OBOL:automatic] synonym: "superficial fascia of eyelid" RELATED [FMA:63975] xref: EMAPA:37533 {source="MA:th"} xref: FMA:63975 xref: MA:0001252 xref: NCIT:C49226 xref: UMLS:C1707991 {source="ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue"} is_a: UBERON:0003581 ! eyelid connective tissue relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0009650 name: cortical arch of kidney def: "The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney." [http://www.medilexicon.com/medicaldictionary.php?t=5968] synonym: "cortex proper of kidney" RELATED [FMA:17876] synonym: "cortical arches of kidney" RELATED OMO:0003004 [] synonym: "renal cortex proper" EXACT [FMA:17876] synonym: "renal cortical arch" EXACT [FMA:17876] xref: EMAPA:37486 {source="MA:th"} xref: FMA:17876 xref: MA:0001650 xref: NCIT:C32385 xref: UMLS:C1511525 {source="ncithesaurus:Cortical_Arch"} is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002189 {source="MA"} ! outer cortex of kidney [Term] id: UBERON:0009651 name: nephron tubule basement membrane def: "A basement membrane that is part of a nephron tubule." [OBOL:automatic] synonym: "kidney tubule basement membrane" EXACT [MA:0001680] synonym: "renal tubular basement membrane" EXACT [] synonym: "renal tubule basement membrane" EXACT [MA:0001680] xref: EMAPA:37490 {source="MA:th"} xref: MA:0001680 xref: NCIT:C49273 xref: SCTID:245251000 xref: UMLS:C1709901 {source="ncithesaurus:Renal_Tubule_Basement_Membrane"} is_a: UBERON:0005769 ! basement membrane of epithelium relationship: part_of UBERON:0004810 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! nephron tubule epithelium [Term] id: UBERON:0009652 name: bronchus basement membrane def: "A basement membrane that is part of a bronchus." [OBOL:automatic] synonym: "bronchial basement membrane" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37809 {source="MA:th"} xref: MA:0001832 xref: NCIT:C49208 xref: UMLS:C1707051 {source="ncithesaurus:Bronchus_Basement_Membrane"} is_a: UBERON:0015329 ! respiratory system basement membrane relationship: part_of UBERON:0002031 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of bronchus property_value: external_ontology_notes "MA classifies as type of connective tissue: https://github.com/obophenotype/mouse-anatomy-ontology/issues/108" xsd:string {external_ontology="MA"} [Term] id: UBERON:0009653 name: trachea basement membrane def: "A basement membrane that is part of a trachea." [OBOL:automatic] xref: EMAPA:37552 {source="MA:th"} xref: MA:0001854 xref: NCIT:C49302 xref: UMLS:C1710455 {source="ncithesaurus:Trachea_Basement_Membrane"} is_a: UBERON:0015329 ! respiratory system basement membrane relationship: part_of UBERON:0001901 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of trachea relationship: part_of UBERON:0009644 {source="MA-modified"} ! trachea non-cartilage connective tissue [Term] id: UBERON:0009654 name: alveolar artery def: "A branch of the maxillary artery that is found in the gingiva, premolars, and molars." [ncithesaurus:Alveolar_Artery] subset: human_reference_atlas xref: EMAPA:37069 {source="MA:th"} xref: MA:0001913 xref: NCIT:C52848 xref: UMLS:C1706783 {source="ncithesaurus:Alveolar_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery relationship: part_of UBERON:0011595 ! jaw region relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "add child terms" xsd:string [Term] id: UBERON:0009655 name: auricular artery def: "An artery that supplies oxygenated blood to the ear." [ncithesaurus:Auricular_Artery] xref: EMAPA:37072 {source="MA:th"} xref: MA:0001918 xref: NCIT:C52849 xref: UMLS:C1706858 {source="ncithesaurus:Auricular_Artery"} is_a: UBERON:0001637 ! artery property_value: editor_note "add child terms" xsd:string [Term] id: UBERON:0009656 name: obsolete frontal artery comment: insufficiently defined is_obsolete: true consider: MA:0001960 [Term] id: UBERON:0009657 name: artery of lip synonym: "labial artery" BROAD [MA:0001987] xref: EMAPA:37092 {source="MA:th"} xref: MA:0001987 xref: NCIT:C52947 xref: UMLS:C1708633 {source="ncithesaurus:Labial_Artery"} is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009658 name: pancreaticoduodenal artery synonym: "arteriae pancreaticoduodenales" EXACT OMO:0003011 [] synonym: "pancreatico-duodenal artery" EXACT [MA:0002013] xref: EMAPA:36529 xref: MA:0002013 xref: NCIT:C52992 xref: UMLS:C1709455 {source="ncithesaurus:Pancreatico-Duodenal_Artery"} xref: Wikipedia:Pancreaticoduodenal_artery is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009659 name: spermatic artery def: "A branch of the abdominal aorta that supplies oxygenated blood to the testis." [ncithesaurus:Spermatic_Artery] xref: MA:0002040 xref: NCIT:C33581 xref: UMLS:C0226409 {source="ncithesaurus:Spermatic_Artery"} is_a: UBERON:0001187 ! testicular artery property_value: editor_note "add child terms; consider merging with testicular artery" xsd:string [Term] id: UBERON:0009660 name: obsolete adrenal vein is_obsolete: true replaced_by: UBERON:0001146 [Term] id: UBERON:0009661 name: midbrain nucleus def: "Nucleus located in the midbrain." [ZFIN:curator] xref: SCTID:279285003 xref: TAO:0002209 xref: ZFA:0001665 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0009662 name: hindbrain nucleus def: "Nucleus located within the hindbrain." [ZFIN:curator] xref: TAO:0002177 xref: ZFA:0001658 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0009663 name: telencephalic nucleus def: "A nucleus of brain that is part of a telencephalon." [OBOL:automatic] xref: TAO:0002178 xref: ZFA:0001660 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0009664 name: gut mesentery synonym: "peritoneal cavity mesentary" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "peritoneal mesentary" RELATED [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0004566 xref: EMAPA:32911 xref: MA:0003203 is_a: UBERON:0002095 ! mesentery property_value: seeAlso "https://github.com/obophenotype/uberon/issues/509" xsd:anyURI [Term] id: UBERON:0009668 name: ventral mesentery def: "Ventral mesentery is the part of the peritoneum closest to the navel." [Wikipedia:Ventral_mesentery] xref: EHDAA2:0004569 xref: SCTID:361430000 xref: Wikipedia:Ventral_mesentery is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery property_value: development_notes "degenerates during development except foregut portion" xsd:string [Term] id: UBERON:0009669 name: embryonic cloacal lumen def: "An anatomical space that surrounded_by a embryonic cloaca." [OBOL:automatic] xref: EHDAA2:0004586 is_a: UBERON:0012463 ! cloacal lumen relationship: part_of UBERON:0000163 ! embryonic cloaca [Term] id: UBERON:0009670 name: rectal lumen def: "An anatomical space that surrounded_by a rectum." [OBOL:automatic] synonym: "lumen of rectum" EXACT [FMA:14598] xref: EHDAA2:0004587 xref: EMAPA:18388 xref: FMA:14598 xref: SCTID:259740004 is_a: UBERON:0000464 ! anatomical space relationship: develops_from UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen relationship: part_of UBERON:0001052 ! rectum relationship: part_of UBERON:0012465 {source="cjm"} ! lumen of terminal part of digestive tract [Term] id: UBERON:0009671 name: nasal fin def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308] xref: EHDAA2:0004548 xref: FMA:295940 is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0005384 ! nasal cavity epithelium relationship: part_of UBERON:0002424 {source="EHDAA2"} ! oral epithelium relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium [Term] id: UBERON:0009672 name: oronasal membrane def: "The oronasal membrane separates the oral cavity and nasal cavity." [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] synonym: "bucconasal membrane" EXACT [EHDAA:7840] xref: EHDAA2:0000188 xref: EHDAA:7840 xref: EHDAA:7984 xref: FMA:295942 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure relationship: develops_from UBERON:0009671 {notes="posterior portion", source="EHDAA2"} ! nasal fin relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium property_value: editor_note "split into two?" xsd:string property_value: taxon_notes "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" xsd:string [Term] id: UBERON:0009673 name: accessory XI nerve cranial component comment: Thus in contemporary discussions of the accessory nerve, the common practice is to dismiss the cranial part altogether, referring to the accessory nerve specifically as the spinal accessory nerve. xref: EHDAA2:0000107 xref: EHDAA:5574 xref: EMAPA:17266 xref: MA:0001089 xref: VHOG:0001174 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001759 ! vagus nerve relationship: part_of UBERON:0002019 {source="MA"} ! accessory XI nerve property_value: editor_note "May be obsoleted in future. WP states: Traditional descriptions of the accessory nerve divide it into two parts: a spinal part and a cranial part.[1] But because the cranial component rapidly joins the vagus nerve and serves the same function as other vagal nerve fibers, modern descriptions often consider the cranial component part of the vagus nerve and not part of the accessory nerve proper." xsd:string property_value: homology_notes "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001174", ontology="VHOG", source="Wikipedia:Cranial_nerves", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009674 name: accessory XI nerve spinal component def: "The spinal root of accessory nerve (or part) is firm in texture, and its fibers arise from the motor cells in the lateral part of the anterior column of the gray substance of the medulla spinalis as low as the fifth cervical nerve. Passing through the lateral funiculus of the medulla spinalis, they emerge on its surface and unite to form a single trunk, which ascends between the ligamentum denticulatum and the posterior roots of the spinal nerves; enters the skull through the foramen magnum, and is then directed to the jugular foramen, through which it passes, lying in the same sheath of dura mater as the vagus, but separated from it by a fold of the arachnoid. In the jugular foramen, it receives one or two filaments from the cranial part of the nerve, or else joins it for a short distance and then separates from it again. As its exit from the jugular foramen, it runs backward in front of the internal jugular vein in 66.6 per cent. of cases, and behind in it 33.3 per cent. The nerve then descends obliquely behind the Digastricus and Stylohyoideus to the upper part of the Sternocleidomastoideus; it pierces this muscle, and courses obliquely across the posterior triangle of the neck, to end in the deep surface of the Trapezius. As it traverses the Sternocleidomastoideus it gives several filaments to the muscle, and joins with branches from the second cervical nerve. In the posterior triangle it unites with the second and third cervical nerves, while beneath the Trapezius it forms a plexus with the third and fourth cervical nerves, and from this plexus fibers are distributed to the muscle." [Wikipedia:Spinal_root_of_accessory_nerve] synonym: "spinal part of the accessory nerve" EXACT [NeuroNames:1709] xref: EHDAA2:0000108 xref: EHDAA:5576 xref: EMAPA:17267 xref: MA:0001090 xref: neuronames:1709 xref: VHOG:0001115 xref: Wikipedia:Spinal_root_of_accessory_nerve is_a: UBERON:0001780 ! spinal nerve relationship: part_of UBERON:0002019 {source="EHDAA2"} ! accessory XI nerve property_value: homology_notes "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001115", ontology="VHOG", source="Wikipedia:Cranial_nerves", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009675 name: chorda tympani branch of facial nerve def: "The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves." [Wikipedia:Chorda_tympani] subset: human_reference_atlas synonym: "chorda tympani" EXACT [FMA:53228] synonym: "chorda tympani nerve" RELATED [Wikipedia:Chorda_tympani] synonym: "corda tympani nerve" RELATED [Wikipedia:Chorda_tympani] synonym: "facial VII nerve chorda tympani branch" EXACT [MA:0001092] synonym: "nervus corda tympani" RELATED [Wikipedia:Chorda_tympani] synonym: "parasympathetic root of submandibular ganglion" EXACT [FMA:53228] synonym: "radix parasympathica ganglii submandibularis" EXACT [FMA:TA] synonym: "tympanic cord" RELATED [Wikipedia:Chorda_tympani] xref: EHDAA2:0000490 xref: EHDAA:3719 xref: EMAPA:18217 xref: FMA:53228 xref: MA:0001092 xref: neuronames:1434 xref: SCTID:280274004 xref: VHOG:0001343 xref: Wikipedia:Chorda_tympani is_a: UBERON:0001785 ! cranial nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009676 name: early telencephalic vesicle subset: efo_slim synonym: "early telencephalic ventricle" RELATED [] synonym: "early telencephalic vesicle" EXACT [EHDAA2:0001981] xref: EFO:0003562 xref: EHDAA2:0001981 xref: EHDAA:1993 xref: EHDAA:2671 xref: EMAPA:16914 is_a: UBERON:0013150 ! future brain vesicle relationship: develops_from UBERON:0006284 {source="EHDAA2"} ! early prosencephalic vesicle relationship: part_of UBERON:0001893 {source="EHDAA2"} ! telencephalon [Term] id: UBERON:0009678 name: tooth row def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator] synonym: "dental arcade" EXACT [FMA:59415] synonym: "row of teeth" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tooth rows" EXACT OMO:0003004 [ZFA:0001642] xref: FMA:59415 xref: TAO:0001667 xref: ZFA:0001642 is_a: UBERON:0003672 ! dentition is_a: UBERON:0034926 ! anatomical row [Term] id: UBERON:0009679 name: set of lower jaw teeth def: "A tooth row that is part of a skeleton of lower jaw." [OBOL:automatic] subset: pheno_slim synonym: "arcus dentalis inferior" EXACT OMO:0003011 [FMA:TA] synonym: "lower dental arcade" EXACT [FMA:55635] synonym: "lower jaw teeth" EXACT [EHDAA2:0001029] synonym: "mandibular dental arcade" RELATED [FMA:55635] synonym: "set of all lower teeth" EXACT [FMA:55635] xref: EHDAA2:0001029 xref: FMA:55635 is_a: UBERON:0009678 ! tooth row relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] id: UBERON:0009680 name: set of upper jaw teeth def: "A tooth row that is part of a skeleton of upper jaw." [OBOL:automatic] subset: pheno_slim synonym: "arcus dentalis superior" EXACT OMO:0003011 [FMA:TA] synonym: "maxillary dental arcade" RELATED [FMA:55634] synonym: "set of all upper teeth" EXACT [FMA:55634] synonym: "upper dental arcade" EXACT [FMA:55634] synonym: "upper jaw teeth" EXACT [EHDAA2:0002129] xref: EHDAA2:0002129 xref: FMA:55634 is_a: UBERON:0009678 ! tooth row relationship: part_of UBERON:0003277 ! skeleton of upper jaw [Term] id: UBERON:0009687 name: middle cardiac vein def: "The middle cardiac vein commences at the apex of the heart, ascends in the posterior longitudinal sulcus, and ends in the coronary sinus near its right extremity." [Wikipedia:Middle_cardiac_vein] subset: human_reference_atlas synonym: "lesser cardiac vein" EXACT [FMA:4713] synonym: "posterior interventricular vein" EXACT [FMA:4713] synonym: "vena cardiaca media" RELATED OMO:0003011 [Wikipedia:Middle_cardiac_vein] xref: EHDAA2:0004509 xref: FMA:4713 xref: NCIT:C12880 xref: SCTID:277729002 xref: UMLS:C0226660 {source="ncithesaurus:Middle_Cardiac_Vein"} xref: Wikipedia:Middle_cardiac_vein is_a: UBERON:0004148 {source="FMA"} ! cardiac vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0009688 name: posterior inferior cerebellar artery def: "The posterior inferior cerebellar artery (PICA), the largest branch of the vertebral, is one of the three main arterial blood supplies for the cerebellum." [Wikipedia:Posterior_inferior_cerebellar_artery] subset: human_reference_atlas synonym: "posterior inferior cerebellar artery" EXACT [EHDAA2:0000660] xref: EHDAA2:0000660 xref: FMA:50518 xref: NCIT:C33362 xref: SCTID:244212001 xref: UMLS:C0149573 {source="ncithesaurus:Posterior_Inferior_Cerebellar_Artery"} xref: Wikipedia:Posterior_inferior_cerebellar_artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0035307 ! branch of vertebral artery relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery relationship: part_of UBERON:0001535 {source="FMA"} ! vertebral artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009689 name: anterior inferior cerebellar artery def: "A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum." [ncithesaurus:Anterior_Inferior_Cerebellar_Artery] subset: human_reference_atlas xref: EHDAA2:0000587 xref: EMAPA:37070 {source="MA:th"} xref: FMA:50544 xref: NCIT:C32091 xref: SCTID:244213006 xref: UMLS:C0226245 {source="ncithesaurus:Anterior_Inferior_Cerebellar_Artery"} xref: Wikipedia:Anterior_inferior_cerebellar_artery is_a: UBERON:0003472 ! cerebellar artery is_a: UBERON:0035489 ! branch of basilar artery relationship: develops_from UBERON:0001532 {source="EHDAA2"} ! internal carotid artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009692 name: lumen of pharyngotympanic tube def: "An organ cavity that is part of a pharyngotympanic tube." [OBOL:automatic] synonym: "auditory tube lumen" EXACT [EHDAA2:0004118] synonym: "lumen of auditory tube" EXACT [FMA:60079] synonym: "lumen of eustachian tube" EXACT [FMA:60079] synonym: "pharyngotympanic tube lumen" EXACT [FMA:60079] xref: EHDAA2:0004118 xref: FMA:60079 is_a: UBERON:0002558 ! organ cavity is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen relationship: part_of UBERON:0002393 ! pharyngotympanic tube property_value: editor_note "Check relationships for conformance with AAO and XAO" xsd:string [Term] id: UBERON:0009695 name: epithelium of laryngopharynx def: "An epithelium that is part of a hypopharynx." [OBOL:automatic] synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454] synonym: "laryngopharynx epithelium" EXACT [FMA:62454] xref: EHDAA2:0004575 xref: FMA:62454 is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0001051 {source="EHDAA2"} ! hypopharynx relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium [Term] id: UBERON:0009697 name: epithelium of appendix def: "An epithelium that is part of a vermiform appendix." [OBOL:automatic] synonym: "appendix epithelium" EXACT [FMA:63581] synonym: "epithelium of vermiform appendix" EXACT [FMA:63581] xref: CALOHA:TS-2062 xref: EHDAA2:0004561 xref: FMA:63581 is_a: UBERON:0001278 ! epithelium of large intestine relationship: develops_from UBERON:0005636 {source="EHDAA2"} ! caecum epithelium relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium relationship: part_of UBERON:0004989 ! mucosa of appendix [Term] id: UBERON:0009708 name: dorsal pancreas subset: human_reference_atlas subset: organ_slim synonym: "pancreatis dorsalis" RELATED [] xref: EHDAA2:0001371 is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland is_a: UBERON:0005177 ! trunk region element relationship: develops_from UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009709 name: ventral pancreas subset: human_reference_atlas subset: organ_slim synonym: "pancreatis ventralis" RELATED [] xref: EHDAA2:0001393 is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland is_a: UBERON:0005177 ! trunk region element relationship: develops_from UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009712 name: endocardium of right ventricle def: "Any endocardium that is part of the right ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "endocardial lining of right ventricle" RELATED [EMAPA:17341] synonym: "right ventricle endocardial tissue" RELATED [VHOG:0001235] synonym: "right ventricle endocardium" EXACT [VHOG:0001235] synonym: "right ventricular endocardium" EXACT [FMA:9536] xref: EHDAA2:0002188 xref: EMAPA:17341 xref: FMA:9536 xref: NCIT:C102343 xref: SCTID:8911002 xref: VHOG:0001235 is_a: UBERON:0001081 ! endocardium of ventricle relationship: develops_from UBERON:0004706 {source="EHDAA2"} ! bulbus cordis relationship: part_of UBERON:0002080 ! heart right ventricle property_value: external_definition "Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk." xsd:string {source="FMA:9536"} [Term] id: UBERON:0009713 name: endocardium of left ventricle def: "Any endocardium that is part of the left ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "endocardial lining of left ventricle" RELATED [EMAPA:17338] synonym: "left ventricle endocardial tissue" RELATED [VHOG:0001233] synonym: "left ventricle endocardium" EXACT [VHOG:0001233] synonym: "left ventricular endocardium" EXACT [FMA:9559] xref: EHDAA2:0002182 xref: EMAPA:17338 xref: FMA:9559 xref: SCTID:191004004 xref: VHOG:0001233 is_a: UBERON:0001081 ! endocardium of ventricle relationship: part_of UBERON:0002084 ! heart left ventricle property_value: external_definition "Endocardium of ventricle which is continuous with mitral valve, aortic valve, atrioventricular septum and the tunica intima of the aorta." xsd:string {source="FMA:9559"} [Term] id: UBERON:0009714 name: intermaxillary process def: "The primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate." [http://www.medilexicon.com/medicaldictionary.php?s=intermaxillary+segment] synonym: "globular process" RELATED DEPRECATED [Wikipedia:Intermaxillary_segment] synonym: "globular processes of his" RELATED DEPRECATED [Wikipedia:Intermaxillary_segment] synonym: "intermaxillary segment" RELATED [Wikipedia:Intermaxillary_segment] xref: EHDAA2:0000868 xref: EHDAA:7856 xref: FMA:295872 xref: Wikipedia:Intermaxillary_segment is_a: UBERON:0009292 {source="EHDAA2-modified"} ! embryonic nasal process relationship: develops_from UBERON:0004067 {notes="inconsistent", source="EHDAA2"} ! lateral nasal prominence relationship: develops_from UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence property_value: editor_note "requires verification. Note EHDAA2 has this as coming from both lateral and medial prominences. See also: median cleft lip" xsd:string [Term] id: UBERON:0009715 name: stomodeal lumen def: "An anatomical cavity that surrounded_by a stomodeum." [OBOL:automatic] synonym: "lumen of stomatodaeum" EXACT [] synonym: "lumen of stomodeum" EXACT [] synonym: "stomatodeal cavity" EXACT [] is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0009716 name: cupular organ def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell." [DOI:10.2108/zsj.27.842] is_a: UBERON:0000020 ! sense organ property_value: taxon_notes "possible homologues of neuromasts in the inner ear (Bone & Ryan, 1978; Wada et al 1998). In the tunicate cupular organ, the sensory cell is a primary neuron sending an axon to the CNS. The sensory cilium is within a deep indentation of the cell and is surrounded by a collar of short microvilli." xsd:string [Term] id: UBERON:0009717 name: coronal organ def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [DOI:10.1002/jez.b.21013] subset: organ_slim xref: BSA:0000122 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0009720 ! oral siphon [Term] id: UBERON:0009718 name: neurohypophyseal duct def: "Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians." [DOI:10.1002/jez.b.21013] comment: Homology: candidate homolog for both neural crest and for the combined olfactory and adenohypophyseal placodes (Burighel et al., 2003; Manni et al., 2004a). Development: During formation of the adult ascidian, the ectodermal neurohypophyseal duct fuses with an evagination of the pharynx to form the neural gland rudiment is_a: UBERON:0000058 ! duct [Term] id: UBERON:0009719 name: tunicate siphon def: "Tubular appendage for drawing or ejecting fluids." [http://orcid.org/0000-0002-6601-2165] synonym: "siphon" EXACT [BTO:0002056] xref: BTO:0002056 is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009720 name: oral siphon synonym: "anterior buccal siphon" EXACT [ISBN:0030229073] synonym: "branchial siphon" RELATED [] synonym: "buccal siphon" EXACT [ISBN:0030229073] synonym: "pharyngeal siphon" RELATED [] xref: BSA:0000106 is_a: UBERON:0009719 ! tunicate siphon relationship: develops_from UBERON:0009896 ! oral siphon primordia [Term] id: UBERON:0009721 name: atrial siphon xref: BSA:0000051 is_a: UBERON:0009719 ! tunicate siphon relationship: develops_from UBERON:0009895 ! atrial siphon primordia [Term] id: UBERON:0009722 name: entire pharyngeal arch endoderm synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621] xref: EHDAA2:0004621 xref: EMAPA:32754 xref: FMA:293087 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium relationship: part_of UBERON:0008814 ! pharyngeal arch system [Term] id: UBERON:0009731 name: sublaminar layers S3 or S4 def: "One of sublaminar layers S3 or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina [Term] id: UBERON:0009732 name: sublaminar layers S1 or S2 or S5 def: "One of sublaminar layers S1, S2, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001041 is_a: UBERON:0008921 ! substratum of layer of retina [Term] id: UBERON:0009733 name: sublaminar layers S1 or S2 or S3 def: "One of sublaminar layers S1, S2, or S3." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001042 is_a: UBERON:0008921 ! substratum of layer of retina [Term] id: UBERON:0009734 name: sublaminar layers S2 or S3 or S4 def: "One of sublaminar layers S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001043 is_a: UBERON:0008921 ! substratum of layer of retina [Term] id: UBERON:0009735 name: sublaminar layers S1 or S3 or S4 def: "One of sublaminar layers S1, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001044 is_a: UBERON:0008921 ! substratum of layer of retina [Term] id: UBERON:0009736 name: sublaminar layers S3 or S4 or S5 def: "One of sublaminar layers S3, S4, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001045 is_a: UBERON:0008921 ! substratum of layer of retina [Term] id: UBERON:0009737 name: sublaminar layers S1 or S2 or S3 or S4 def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001046 is_a: UBERON:0008921 ! substratum of layer of retina [Term] id: UBERON:0009738 name: border of sublaminar layers S1 and S2 def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] xref: CP:0001038 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 [Term] id: UBERON:0009739 name: border of sublaminar layers S3 and S4 def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] xref: CP:0001039 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 [Term] id: UBERON:0009740 name: border between sublaminar layers def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0009741 name: obsolete tailbud stage comment: Was made obsolete as it was xenopus specific is_obsolete: true consider: XAO:1000007 [Term] id: UBERON:0009742 name: proamniotic cavity def: "The cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds." [MP:0011197] subset: pheno_slim xref: EMAPA:36038 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009743 name: visceral yolk sac cavity def: "The closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm)." [MP:0011201] subset: pheno_slim is_a: UBERON:0007473 ! lumen of epithelial sac is_a: UBERON:0012466 ! extraembryonic cavity relationship: part_of UBERON:0008852 ! visceral yolk sac [Term] id: UBERON:0009744 name: lymph node medullary sinus def: "The channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels." [MP:0011222] comment: Lymph flows into the medullary sinuses from cortical sinuses, and into efferent lymphatic vessels. Medullary sinuses contain histiocytes (immobile macrophages) and reticular cells.[WP] subset: human_reference_atlas subset: pheno_slim synonym: "lymph node medullary sinusoid" RELATED [] synonym: "medullary sinus" BROAD [] xref: EMAPA:37898 {source="MA:th"} xref: FMA:312359 is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0002007 ! medulla of lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009745 name: lymph node medullary cord def: "The dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node." [MP:0011224] subset: human_reference_atlas subset: pheno_slim synonym: "medullary cord" BROAD [] xref: EMAPA:37897 {source="MA:th"} is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002007 ! medulla of lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009746 name: head fold of embryonic disc def: "The crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo." [MP:0011257] subset: pheno_slim synonym: "head fold" EXACT [] xref: FMA:295585 xref: SCTID:361453004 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004749 ! blastodisc [Term] id: UBERON:0009747 name: tail fold of embryonic disc def: "The crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo." [MP:0011258] subset: pheno_slim synonym: "tail fold" EXACT [] xref: FMA:295589 xref: SCTID:361439004 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004749 ! blastodisc [Term] id: UBERON:0009748 name: cephalic neural fold def: "The elevated margins of the neural groove that are located in the future cephalic region of the embryo." [MP:0011259] subset: pheno_slim xref: EMAPA:16090 is_a: UBERON:0005062 ! neural fold [Term] id: UBERON:0009749 name: limb mesenchyme def: "The primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261] subset: pheno_slim synonym: "limb mesoderm" RELATED [Geisha:syn, NCBITaxon:8782] xref: EMAPA:32705 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0002101 ! limb property_value: external_ontology_notes "EMAPA mapping from TH" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0009751 name: cardiac mesenchyme def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures." [MP:0011264] subset: pheno_slim synonym: "heart mesenchyme" EXACT [EMAPA:36438] xref: EHDAA2:0004162 xref: EMAPA:36438 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0000948 ! heart property_value: editor_note "decide whether to merge with cardiac mesoderm. In EHDAA2 this lasts CS12->unbounded, includes mesenchyme of individual components as parts" xsd:string [Term] id: UBERON:0009752 name: pancreas mesenchyme def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas." [MP:0011265] subset: efo_slim subset: human_reference_atlas subset: pheno_slim xref: EFO:0002557 xref: EMAPA:26220 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009753 name: adrenal gland cortex zone synonym: "adrenal cortical region" EXACT [FMA:69086] synonym: "region of adrenal cortex" RELATED [FMA:69086] xref: EMAPA:35113 xref: FMA:69086 xref: MA:0001887 xref: SCTID:68594002 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex [Term] id: UBERON:0009754 name: blubber def: "A thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians." [Wikipedia:Blubber] xref: SCTID:83953006 xref: Wikipedia:Blubber is_a: UBERON:0002190 {source="Wikipedia"} ! subcutaneous adipose tissue property_value: location_notes "Lipid-rich, collagen fiber-laced blubber comprises the hypodermis and covers the whole body, except for parts of the appendages, strongly attached to the musculature and skeleton by highly organized, fan-shaped networks of tendons and ligaments. It can comprise up to 50% of the body mass of some marine mammals during some points in their lives, and can range from two inches (5 cm) thick in dolphins and smaller whales, to more than 12 inches (30 cm)thick in some bigger whales, such as right and bowhead whales" xsd:string [Term] id: UBERON:0009755 name: spermaceti def: "Wax present in the head cavities of the sperm whale." [Wikipedia:Spermaceti] xref: MESH:C009301 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Spermaceti is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0009756 name: spermaceti organ def: "An organ that contains spermaceti." [Wikipedia:Spermaceti_organ] subset: organ_slim xref: Wikipedia:Spermaceti_organ is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0000033 ! head property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Sperm_whale_head_anatomy.svg" xsd:anyURI [Term] id: UBERON:0009757 name: ambergris def: "A biliary secretion of the intestines of the sperm whale." [Wikipedia:Ambergris] xref: MESH:D018648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Ambergris is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0009758 name: abdominal ganglion def: "A ganglion that is part of a abdominal segment of trunk." [OBOL:automatic] xref: SCTID:280508003 is_a: UBERON:0007134 ! trunk ganglion relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0009767 name: proximal interphalangeal joint def: "An inter-phalangeal joint that connects a proximal phalanx to either a medial or distal phalanx." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "PIJ joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] synonym: "PIP joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] xref: FMA:65022 xref: NCIT:C101528 is_a: UBERON:0006658 ! interphalangeal joint [Term] id: UBERON:0009768 name: distal interphalangeal joint def: "An inter-phalangeal joint that connects a distal phalanx to either a medial or proximal phalanx." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "DIJ joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] synonym: "DIP joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] xref: FMA:65024 xref: NCIT:C101529 is_a: UBERON:0006658 ! interphalangeal joint [Term] id: UBERON:0009769 name: left common cardinal vein synonym: "common cardinal vein left" EXACT [EHDAA2:0000304] xref: EHDAA2:0000304 xref: FMA:70311 xref: SCTID:361506000 is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein property_value: taxon_notes "the left duct atrophies at metamorphosis in the lamprey (22)[PMID:20959416, S1]" xsd:string [Term] id: UBERON:0009771 name: left anterior cardinal vein def: "An anterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "left precardinal vein" EXACT [FMA:70313] synonym: "precardinal vein left" EXACT [EHDAA2:0000127] xref: EHDAA2:0000127 xref: FMA:70313 xref: SCTID:361502003 is_a: UBERON:0003087 ! anterior cardinal vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009772 name: right anterior cardinal vein def: "An anterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "precardinal vein right" EXACT [EHDAA2:0004537] synonym: "right precardinal vein" EXACT [FMA:70312] xref: EHDAA2:0004537 xref: FMA:70312 xref: SCTID:361503008 is_a: UBERON:0003087 ! anterior cardinal vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009773 name: renal tubule def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [DOI:10.1371/journal.pone.0099864, GO:0061333, GOC:dph, GOC:mtg_kidney_jan10] subset: grouping_class subset: pheno_slim synonym: "renal tubule (generic)" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tubule of excretory system" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0006555 ! excretory tube property_value: curator_notes "this class groups vertebrate nephron tubules with analagous structures such as insect Malpighian tubules" xsd:string [Term] id: UBERON:0009774 name: obsolete embryonic midbrain hindbrain boundary is_obsolete: true [Term] id: UBERON:0009775 name: lateral medullary reticular complex def: "A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal[WP,modified]." [Wikipedia:Lateral_reticular_nucleus] comment: The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis[WP] synonym: "lateral group of medullary reticular formation" EXACT [FMA:72573] synonym: "lateral medullary reticular group" EXACT [FMA:72573] synonym: "lateral reticular formation of the medulla oblongata" EXACT [FMA:72573] synonym: "nuclei laterales myelencephali" EXACT OMO:0003011 [FMA:72573, FMA:TA] xref: BAMS:LMRt xref: FMA:72573 xref: HBA:9613 xref: neuronames:726 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation [Term] id: UBERON:0009776 name: intermediate reticular formation synonym: "intermediate reticular formations" RELATED OMO:0003004 [ZFA:0000219] xref: TAO:0000219 xref: ZFA:0000219 is_a: UBERON:0007245 {source="https://orcid.org/0000-0002-6601-2165"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="GOC:pr", source="brainspan.org"} ! medullary reticular formation property_value: term_tracker_item "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855" xsd:anyURI [Term] id: UBERON:0009777 name: intermediate reticular nucleus def: "A nucleus of brain that is part of a intermediate reticular formation." [OBOL:automatic] xref: BAMS:IRN xref: BAMS:IRt xref: DHBA:12620 xref: FMA:84336 xref: MBA:136 xref: neuronames:1114 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0009776 ! intermediate reticular formation [Term] id: UBERON:0009778 name: pleural sac def: "A serous sac that has the pleura and the pleural cavity as parts." [https://github.com/obophenotype/uberon/issues/86] subset: non_informative xref: EHDAA2:0004737 xref: FMA:9690 xref: SCTID:361996004 is_a: UBERON:0005906 ! serous sac is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001558 {source="FMA"} ! lower respiratory tract property_value: external_ontology_notes "despite its name the class EHDAA2:0004737 is not a true cavity, it corresponds to what we call the sac" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0009779 name: cardiac muscle tissue of right auricle def: "A cardiac muscle tissue that is part of a right atrium auricular region." [OBOL:automatic] synonym: "cardiac muscle of right auricular region" EXACT [EMAPA:16826] synonym: "right atrium auricular region heart muscle" EXACT [EHDAA2:0004169] synonym: "right auricular region cardiac muscle" RELATED [VHOG:0000611] synonym: "right auricular region myocardium" EXACT [VHOG:0000611] xref: EHDAA2:0004169 xref: EMAPA:16826 xref: EMAPA:17324 xref: FMA:84280 xref: VHOG:0000611 is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region is_a: UBERON:0003379 ! cardiac muscle of right atrium relationship: part_of UBERON:0006631 ! right atrium auricular region [Term] id: UBERON:0009780 name: cardiac muscle tissue of left auricle def: "A cardiac muscle tissue that is part of a left atrium auricular region." [OBOL:automatic] synonym: "cardiac muscle of left auricular region" EXACT [EMAPA:16818] synonym: "left atrium auricular region heart muscle" EXACT [EHDAA2:0004168] xref: EHDAA2:0004168 xref: EMAPA:16818 xref: EMAPA:17318 xref: FMA:84281 is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region is_a: UBERON:0003380 ! cardiac muscle of left atrium relationship: part_of UBERON:0006630 ! left atrium auricular region property_value: seeAlso "https://github.com/obophenotype/uberon/issues/321" xsd:anyURI [Term] id: UBERON:0009834 name: dorsolateral prefrontal cortex def: "The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 - 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas." [Wikipedia:Dorsolateral_prefrontal_cortex] xref: DHBA:10173 xref: FMA:276189 xref: Wikipedia:Dorsolateral_prefrontal_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex property_value: editor_note "check dorsolateral prefrontal neocortex" xsd:string [Term] id: UBERON:0009835 name: anterior cingulate cortex def: "The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. Wikipedia:File:Gray727.svg." [BIRNLEX:936] synonym: "ACC" RELATED OMO:0003000 [BTO:0004249] xref: BIRNLEX:936 xref: BTO:0004249 xref: FMA:271599 xref: Wikipedia:Anterior_cingulate_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png" xsd:anyURI [Term] id: UBERON:0009836 name: fronto-orbital gyrus synonym: "fronto-orbital gyrus" EXACT [BIRNLEX:1243] synonym: "gyrus fronto-orbitalis" RELATED OMO:0003011 [NeuroNames:90] synonym: "orbito-frontal gyrus" EXACT [] synonym: "orbitofrontal gyrus" EXACT [] xref: BAMS:FOG xref: BAMS:OFG xref: BIRNLEX:1243 xref: neuronames:90 {source="BIRNLEX:1243"} xref: UMLS:C0262239 {source="BIRNLEX:1243"} is_a: UBERON:0007193 {source="NIF"} ! orbital gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0009840 name: lower rhombic lip def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] subset: pheno_slim synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lower (caudal) rhombic lip" EXACT [] xref: DHBA:10666 xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] id: UBERON:0009841 name: upper rhombic lip def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator] subset: pheno_slim synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] synonym: "rostral rhombic lip" EXACT [DHB:URL] synonym: "upper (rostral) rhombic lip" EXACT [] xref: DHBA:10665 xref: EHDAA2:0000229 xref: TAO:0001442 xref: ZFA:0001442 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0005499 {source="ZFA"} ! rhombomere 1 relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] id: UBERON:0009842 name: glandular acinus def: "The many-lobed berry cluster of cells that is the terminous of a gland where the secretion is produced is acinar in form." [Wikipedia:Acinus] synonym: "acini" RELATED OMO:0003004 [Wikipedia:Acinus] synonym: "acinus" BROAD [FMA:55588] xref: FMA:55588 xref: Wikipedia:Acinus is_a: UBERON:0034922 ! cell cluster relationship: part_of UBERON:0002530 ! gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png" xsd:anyURI property_value: has_relational_adjective "acinar" xsd:string [Term] id: UBERON:0009843 name: prostate epithelial cord def: "A solid cord of prostate epithelium." [GO:0060527, OBOL:automatic, PMID:18977204] comment: Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204] synonym: "cord of prostate epithelium" EXACT [PMID:18977204] synonym: "epithelial cord of prostate" EXACT [] is_a: UBERON:0005154 ! epithelial cord [Term] id: UBERON:0009844 name: urogenital sinus lumen def: "An anatomical space that surrounded_by a primitive urogenital sinus." [OBOL:automatic] xref: EHDAA2:0002142 is_a: UBERON:0000464 ! anatomical space relationship: develops_from UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen relationship: part_of UBERON:0000164 ! primitive urogenital sinus [Term] id: UBERON:0009845 name: urogenital sinus mesenchyme def: "Mesenchyme that surrounds primitive urogenital sinus." [OBOL:automatic] synonym: "UGM" EXACT OMO:0003000 [PMID:18977204] xref: EMAPA:31500 is_a: UBERON:0003104 ! mesenchyme property_value: development_notes "Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth" xsd:string [Term] id: UBERON:0009846 name: embryonic cloacal epithelium def: "An epithelium that is part of a embryonic cloaca." [OBOL:automatic] synonym: "cloacal epithelium" BROAD [EHDAA2:0004585] xref: EHDAA2:0004585 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0009521 ! anal membrane endodermal component is_a: UBERON:0012481 ! cloacal epithelium relationship: develops_from UBERON:0003353 {source="EHDAA2"} ! epithelium of hindgut relationship: part_of UBERON:0000163 ! embryonic cloaca relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium [Term] id: UBERON:0009847 name: prostate field def: "A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, PMID:18977204] synonym: "prostate primordium" RELATED [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:0004902 {source="PMID:18977204"} ! urogenital sinus epithelium [Term] id: UBERON:0009848 name: zona limitans intrathalamica def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] synonym: "MDO" RELATED OMO:0003000 [Wikipedia:Thalamus] synonym: "mid-diencephalic organizer" RELATED [Wikipedia:Thalamus] synonym: "ZLI" EXACT OMO:0003000 [GO:0022006] synonym: "ZLI organizer" RELATED [Wikipedia:Thalamus] xref: EMAPA:36604 xref: TAO:0001344 xref: Wikipedia:Zona_limitans_intrathalamica xref: XAO:0004305 xref: ZFA:0001344 is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001897 {source="ZFA"} ! dorsal plus ventral thalamus property_value: editor_note "Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17" xsd:string property_value: external_definition "The border between the dorsal and ventral thalamus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001344", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0009849 name: tadpole stage def: "Wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [ISBN:0471209627, ISSN:0003-276X, Wikipedia:Tadpole] xref: Wikipedia:Tadpole xref: XAO:1000008 is_a: UBERON:0004728 ! amphibian larval stage [Term] id: UBERON:0009850 name: nematode larva def: "A multicellular organism that existence_starts_and_ends_during a nematode larval stage." [OBOL:automatic] is_a: UBERON:0002548 ! larva relationship: present_in_taxon NCBITaxon:6239 [Term] id: UBERON:0009851 name: border of sublaminar layers S4 and S5 def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0009852 name: border of sublaminar layers S2 and S3 def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0009853 name: body of uterus def: "The part of the uterus above the isthmus and below the orifices of the uterine tubes." [http://medical-dictionary.thefreedictionary.com/corpus+uteri] subset: efo_slim subset: human_reference_atlas synonym: "corpus uteri" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "uterine body" EXACT [FMA:17739] synonym: "uterine corpus" EXACT [FMA:17739] xref: CALOHA:TS-1265 xref: EFO:0000382 xref: FMA:17739 xref: NCIT:C12316 xref: SCTID:279878007 xref: UMLS:C0227813 {source="ncithesaurus:Corpus_Uteri"} is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000995 {source="FMA"} ! uterus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI [Term] id: UBERON:0009854 name: digestive tract diverticulum def: "Branch or outpocketing of the digestive tract." [https://orcid.org/0000-0002-6601-2165] synonym: "diverticulum of gut" RELATED [FBbt:00100316] synonym: "intestinal pouch" RELATED [] xref: FBbt:00100316 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0009856 ! sac [Term] id: UBERON:0009855 name: echinoderm gastric caecum def: "Non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer." [PMID:20955602] comment: The digestive tract of many metazoan invertebrates is characterized by the presence of caeca or diverticula that serve secretory and/or absorptive functions. With the development of various feeding habits, distinctive digestive organs may be present in certain taxa. This also holds true for sea urchins (Echinodermata: Echinoidea), in which a highly specialized gastric caecum can be found in members of a derived subgroup, the Irregularia (cake urchins, sea biscuits, sand dollars, heart urchins, and related forms)... Homologous with the more or less pronounced dilation of the anterior stomach that is observed in most "regular" sea urchin taxa[PMID:20955602] is_a: UBERON:0009854 ! digestive tract diverticulum [Term] id: UBERON:0009856 name: sac synonym: "diverticulum" RELATED [] synonym: "pouch" EXACT [] xref: galen:Diverticulum is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0009857 name: cavum septum pellucidum def: "A space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum." [BTO:0003447, Wikipedia:Cave_of_septum_pellucidum] synonym: "cave of septum pellucidum" EXACT [FMA:61874] synonym: "cavum of septum pellucidum" EXACT [FMA:61874] synonym: "cavum septi pellucidi" RELATED OMO:0003011 [Wikipedia:Cave_of_septum_pellucidum] synonym: "fifth ventricle" RELATED [FMA:61874, Wikipedia:Cave_of_septum_pellucidum] synonym: "septum pellucidum cave" EXACT [FMA:61874] synonym: "ventriculus septi pellucidi" EXACT [FMA:61874] xref: BAMS:CSP xref: BTO:0003447 xref: DHBA:12099 xref: FMA:61874 xref: NCIT:C32602 xref: neuronames:257 xref: SCTID:180933005 xref: UMLS:C0228158 {source="ncithesaurus:Fifth_Ventricle"} xref: Wikipedia:Cave_of_septum_pellucidum is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004714 ! septum pellucidum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/CavumSeptumPellucidumDiagram.jpg" xsd:anyURI property_value: taxon_notes "In humans, present in 100% of fetuses, but over 85% of them fuse by 3-6 months after birth" xsd:string [Term] id: UBERON:0009858 name: outer fibrous layer of periosteum synonym: "capsular layer of periosteum" EXACT [FMA:234354] synonym: "external layer of periosteum" EXACT [] synonym: "external periosteum" EXACT [] synonym: "fibrous layer of periosteum" EXACT [FMA:234354] synonym: "outer fibrous layer of periosteum" EXACT [FMA:234354] xref: FMA:234354 is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum [Term] id: UBERON:0009859 name: endosteum def: "A thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones." [Wikipedia:Endosteum] subset: pheno_slim xref: FMA:32692 xref: NCIT:C13183 xref: SCTID:57487002 xref: UMLS:C0222658 {source="ncithesaurus:Endosteum"} xref: Wikipedia:Endosteum is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0002495 ! long bone property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg" xsd:anyURI property_value: has_relational_adjective "endosteal" xsd:string [Term] id: UBERON:0009860 name: ascidian digestive gland xref: ANISEED:1239655 is_a: UBERON:0006925 ! digestive system gland [Term] id: UBERON:0009861 name: ascidian neural complex def: "Missing definition for term UBERON:0009861. Please replace it using linked reference." [PMID:21558186] is_a: UBERON:0002530 ! gland [Term] id: UBERON:0009862 name: ascidian cerebral ganglion def: "Missing definition for term UBERON:0009862. Please replace it using linked reference." [PMID:21558186] comment: the CG appears to be a diencephalic brain. It originates mainly from the posterior sensory vesicle (Takamura 2002; Dufour et al. 2006) and shows endocrine activity. For examples, ascidian genes orthologous to GnRH and OT/VP, which are secreted from the hypothalamus and the NH, respectively, in vertebrates, are expressed in the cortex of the CG, suggesting that the NC is not distinctly compartmentalized as are vertebrate brains (Tsutsui et al. 1998; Kavanaugh et al. 2005; Kawada et al. 2008; Ukena et al. 2008; Kawada et al. 2009). Moreover, PC2 expression in the cortex of the CG supports possible endocrine activity (Sekiguchi et al. 2007). // Editor notes: consider merging into brain, based on http://www.ncbi.nlm.nih.gov/pubmed/21062451 "We suggest using the term brain not only for the 'dorsal ganglia' of adult Tunicata and Pterobranchia, but also for the larval 'cerebral ganglion' of tunicates." is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009863 name: ascidian ciliated funnel def: "Missing definition for term UBERON:0009863. Please replace it using linked reference." [PMID:21558186] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009864 name: ascidian neural gland def: "Missing definition for term UBERON:0009864. Please replace it using linked reference." [PMID:21558186] comment: assumed to be a pituitary homolog. Current data from the Ciona genome suggests that the ascidian NC, including the CF, is unlikely to be a pituitary-like endocrine gland, while it is necessary to examine other ascidians before drawing a final conclusion [PMID:21558186] is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0009718 ! neurohypophyseal duct relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009865 name: Hatschek's pit def: "A deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [Wikipedia:Hatschek's_pit] xref: Wikipedia:Hatschek's_pit is_a: UBERON:0003102 ! surface structure relationship: develops_from UBERON:0009868 ! Hatschek's left diverticulum relationship: develops_from UBERON:0009957 ! ciliated pit [Term] id: UBERON:0009866 name: Hatschek's nephridium def: "An unpaired kidney whose duct opens into the anterior pharynx. It can be seen as a deep ciliated fossa on the dorsal midline of the buccal cavity (mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [http://orcid.org/0000-0002-6601-2165] subset: organ_slim is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001008 ! renal system [Term] id: UBERON:0009867 name: Hatschek's diverticulum is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0009868 name: Hatschek's left diverticulum def: "A Hatschek's diverticulum that is in the left side of a multicellular organism." [OBOL:automatic] is_a: UBERON:0009867 ! Hatschek's diverticulum property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009869 name: Hatschek's right diverticulum def: "A Hatschek's diverticulum that is in the right side of a multicellular organism." [OBOL:automatic] is_a: UBERON:0009867 ! Hatschek's diverticulum property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009870 name: zone of stomach alt_id: UBERON:0009034 def: "A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland." [ISBN:0073040584, Wikipedia:Stomach#Sections] synonym: "gastric zone" EXACT [FMA:14558] synonym: "region of stomach" EXACT [] synonym: "section of stomach" EXACT [] xref: EMAPA:35821 xref: FMA:14558 xref: MA:0002561 xref: SCTID:245415005 xref: Wikipedia:Stomach#Sections is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000945 ! stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Regions_of_stomach.svg" xsd:anyURI property_value: editor_note "We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach" xsd:string [Term] id: UBERON:0009871 name: nephrogenic zone def: "Outer portion of the renal cortex. Site of formation of medullary and cortical elements." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "cortical nephrogenic niche" EXACT [PMID:29449449] synonym: "cortical nephrogenic zone" EXACT [PMID:29449449] synonym: "nephrogenic tissue" RELATED [] xref: EMAPA:27721 xref: http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png xref: MA:0002996 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001225 ! cortex of kidney property_value: taxon_notes "see http://www.ncbi.nlm.nih.gov/pubmed/12761251 for description of nephrogenic zone in dogfish." xsd:string [Term] id: UBERON:0009877 name: metapodium region def: "Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region." [https://orcid.org/0000-0002-6601-2165, MA:th] synonym: "cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "equine cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "metacarpal or metatarsal part of limb" EXACT [] synonym: "metacarpus/metatarsus" RELATED [] synonym: "metacarpus/metatarsus region" EXACT [] synonym: "metapodial segment" EXACT [] synonym: "metapodium" RELATED [] xref: SCTID:370640001 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0012140 {source="PHENOSCAPE:ni"} ! digitopodium region property_value: editor_note "considering adding 'acropodial region'" xsd:string property_value: terminology_notes "Naming conventions for pod terms under discussion within phenoscape group" xsd:string [Term] id: UBERON:0009878 name: mesopodial skeleton def: "The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton." [https://orcid.org/0000-0002-6601-2165] synonym: "basipodium" RELATED [VSAO:0005022, VSAO:NI] synonym: "basipodium skeleton" EXACT [VSAO:0005022, VSAO:NI] synonym: "carpal/tarsal skeleton" EXACT [] synonym: "mesopodial skeleton" EXACT [VSAO:0005022] synonym: "mesopodium" RELATED [VSAO:0005022, VSAO:NI] synonym: "mesopodium skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "skeletal parts of mesopodium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: VSAO:0005022 is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0006716 ! mesopodium region relationship: part_of UBERON:0006717 ! autopodial skeleton property_value: axiom_lost_from_external_ontology "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0005022", ontology="VSAO"} property_value: external_definition "Limb skeleton subdivision consisting of endochondral bones increasing the freedom of movement of the autopodia, and located between zeugopodia and autopodia.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0005022", ontology="VSAO", source="VSAO:NI"} [Term] id: UBERON:0009879 name: tarsal skeleton def: "Subdivision of skeleton that consists of endochondral elements distal to the zeugopodial skeletal elements which constitute the proximal region of the posterior autopod skeleton[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/94, PHENOSCAPE:ad, VSAO:0005024] subset: pheno_slim synonym: "basipodium" RELATED [VSAO:0005024] synonym: "hind mesopodial skeleton" EXACT [] synonym: "hind mesopodium" EXACT [] synonym: "hind mesopodium skeleton" EXACT [] synonym: "mesopodium" RELATED [VSAO:0005024] synonym: "set of tarsal bones" EXACT [FMA:71339] synonym: "skeletal parts of hind mesopodium" EXACT [] synonym: "tarsal bones" RELATED [] synonym: "tarsal bones set" EXACT [FMA:71339] synonym: "tarsalia" EXACT [XAO:0003211] synonym: "tarsus" RELATED [XAO:0003211] xref: AAO:0000220 xref: EMAPA:19133 xref: FMA:71339 xref: GAID:1223 xref: MA:0000050 xref: SCTID:264228001 xref: SCTID:361796005 xref: VHOG:0001160 xref: VSAO:0005024 xref: Wikipedia:Tarsus_(skeleton) xref: XAO:0003211 is_a: UBERON:0009878 ! mesopodial skeleton relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0004454 ! tarsal region property_value: external_definition "Segment of the leg corresponding to the tarsus. It consists of several elements that articulate with the tibia and fibula at one end and the metatarsals at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000220", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "we assume MA:tarsus belongs here, as there is a distinct class MA:ankle, with the tarsal bone being part of the former. XAO:tarsus is part of the hindlimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent." xsd:string {external_ontology="MA"} property_value: homology_notes "The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001160", ontology="VHOG", source="DOI:10.1002/jez.1100 Wagner GP, Chiu C, The tetrapod limb: A hypothesis on its origin. J Exp Zool (Mol Dev Evol) (2001)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present" xsd:string {source="PHENOSCAPE:ad"} [Term] id: UBERON:0009880 name: carpal skeleton def: "Subdivision of skeleton that consists of the endochondral elements distal to the anterior limb/fin zeugopodial skeletal elements which constitute the proximal region of the anterior autopod skeleton[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/93, PHENOSCAPE:ad] synonym: "carpal bones" EXACT [EMAPA:25056, FMA:71335] synonym: "carpal bones set" EXACT [FMA:71335] synonym: "carpus" RELATED [MA:0000040, XAO:0003207] synonym: "fore mesopodial skeleton" EXACT [] synonym: "fore mesopodium" RELATED [AAO:0000201] synonym: "fore mesopodium skeleton" EXACT [] synonym: "ossa carpi" EXACT [] synonym: "ossa carpi" RELATED OMO:0003011 [Wikipedia:Carpus] synonym: "set of carpal bones" RELATED [FMA:71335] synonym: "skeletal parts of fore mesopodium" EXACT [] synonym: "skeleton of carpus" EXACT [] xref: AAO:0000201 xref: FMA:71335 xref: http://palaeos.com/vertebrates/glossary/images/382x366xUnciform1.jpg.pagespeed.ic.NirdxtwNVu.jpg xref: MA:0000040 xref: VHOG:0001161 xref: VSAO:0005023 xref: Wikipedia:Carpus xref: XAO:0003207 is_a: UBERON:0009878 ! mesopodial skeleton relationship: part_of UBERON:0001442 ! skeleton of manus relationship: part_of UBERON:0004452 ! carpal region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg" xsd:anyURI property_value: external_definition "Segment of the forearm corresponding to the carpus. It consists of several elements that articulate with the radius and ulna at one end and the metacarpals at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000201", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "we assume MA:carpus belongs here, as there is a distinct class MA:wrist, with the carpal bone being part of the former. XAO:carpus is part of the forelimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent." xsd:string {external_ontology="MA"} property_value: homology_notes "The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001161", ontology="VHOG", source="DOI:10.1002/jez.1100 Wagner GP, Chiu C, The tetrapod limb: A hypothesis on its origin. J Exp Zool (Mol Dev Evol) (2001)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present[PHENOSCAPE:ad]." xsd:string {source="Wikipedia:Carpus#Evolutionary_variations"} property_value: taxon_notes "The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone" xsd:string [Term] id: UBERON:0009881 name: anterior lateral plate mesoderm subset: efo_slim synonym: "ALPM" EXACT [ZFA:0005041] xref: EFO:0003704 xref: TAO:0005041 xref: ZFA:0005041 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm [Term] id: UBERON:0009882 name: anal column def: "One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal[WP]." [Wikipedia:Anal_columns] synonym: "column of Morgagni" EXACT [FMA:15713] synonym: "columnae anales" RELATED OMO:0003011 [Wikipedia:Anal_columns] xref: FMA:15713 xref: NCIT:C32067 xref: SCTID:245444007 xref: UMLS:C0227428 {source="ncithesaurus:Anal_Column"} xref: Wikipedia:Anal_columns is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000159 ! anal canal property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png" xsd:anyURI [Term] id: UBERON:0009883 name: medullary ray def: "A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla." [MP:0011347, Wikipedia:Bone_marrow_of_ovaryry_ray_(anatomy)] subset: human_reference_atlas subset: pheno_slim synonym: "Ferrein's pyramid" EXACT [MP:0011347] synonym: "kidney medullary ray" EXACT [MP:0011347] synonym: "renal medullary ray" EXACT [MP:0011347] xref: BTO:0001155 xref: EMAPA:37906 {source="MA:th"} xref: FMA:74299 xref: Wikipedia:Bone_marrow_of_ovaryry_ray_(anatomy) is_a: UBERON:0000064 {source="FMA"} ! organ part relationship: part_of UBERON:0001225 {source="MP"} ! cortex of kidney relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "FMA says parenchyma, MP says cortex" xsd:string {external_ontology="FMA"} property_value: terminology_notes "Their name is potentially misleading -- the 'medullary' refers to their destination, not their location. They are located only in the renal cortex, and not in the renal medulla" xsd:string [Term] id: UBERON:0009885 name: interlobar artery def: "An artery that supplies a renal lobe." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Interlobar_arteries] subset: human_reference_atlas subset: pheno_slim synonym: "arteriae interlobares renis" EXACT OMO:0003004 [FMA:TA] synonym: "arteriae interlobares renis" RELATED OMO:0003011 [Wikipedia:Interlobar_arteries] synonym: "interlobar arteries of kidney" RELATED [FMA:71637] synonym: "interlobar artery of kidney" EXACT [FMA:71637] synonym: "kidney interlobar artery" EXACT [] synonym: "renal interlobar artery" EXACT [MP:0011355] synonym: "set of interlobar arteries of kidney" RELATED [FMA:71637] xref: EMAPA:37091 {source="MA:th"} xref: FMA:71637 xref: SCTID:62802007 xref: Wikipedia:Interlobar_arteries is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: external_ontology_notes "FMA only has the set term" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0009887 name: interlobar vein def: "The interlobar veins are veins of the renal circulation which drain the renal lobes." [Wikipedia:Interlobar_veins] subset: human_reference_atlas synonym: "interlobar vein of kidney" EXACT [FMA:71631] synonym: "interlobar veins of kidney" RELATED [FMA:71631] synonym: "set of interlobar veins of kidney" RELATED [FMA:71631] synonym: "venae interlobares renis" EXACT OMO:0003004 [FMA:TA] synonym: "venae interlobares renis" RELATED OMO:0003011 [Wikipedia:Interlobar_veins] xref: FMA:71631 xref: Wikipedia:Interlobar_veins is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: external_ontology_notes "FMA only has the set term" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0009888 name: Koller's sickle def: "A local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast." [PMID:9693154, Wikipedia:Koller's_sickle] subset: early_development synonym: "Kohler's sickle" EXACT [] xref: Wikipedia:Koller's_sickle is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0009889 name: secondary heart field def: "A specific region of the lateral mesoderm that will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract)." [GO:0003139, GOC:mtg_heart, GOC:rl] synonym: "anterior heart field" EXACT [PMID:17276708] synonym: "anterior/second heart field" EXACT [Geisha:syn, NCBITaxon:8782] synonym: "second heart field" EXACT [XAO:0004186] synonym: "SHF" RELATED [XAO:0004186] xref: XAO:0004186 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:0003081 {source="GO:0003129"} ! lateral plate mesoderm property_value: development_notes "in mouse has left ventricular identity[PMID:22855565]" xsd:string property_value: external_definition "extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract[PMID:17276708]." xsd:string {source="PMID:17276708"} property_value: taxon_notes "In general, the two studies in chick concluded that the contribution of the SHF was to the outflow tract, whereas the mouse work suggested that the second lineage contributed more broadly to the heart, including the outflow tract and much or all of the right ventricle [11-14]. These different conclusions may represent differences in the experimental approaches used or may represent bona fide differences in the contribution of the second lineage to the hearts of birds compared to mammals [11]. Alternatively, the secondary/anterior heart fields described in the chick may represent a subset of a broader field that makes a more substantial contribution to the heart, as the mouse studies suggested" xsd:string {source="PMID:17276708"} [Term] id: UBERON:0009890 name: anterior intestinal portal def: "Opening of the foregut into the midgut." [http://www.drugs.com/dict/fovea-cardiaca.html] synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009891 name: facial mesenchyme def: "Mesenchyme that is part of a developing face." [OBOL:automatic] synonym: "face mesenchyme" EXACT [] synonym: "mesenchyme of face" EXACT [] xref: EMAPA:35337 xref: FMA:302884 is_a: UBERON:0005253 ! head mesenchyme relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0009892 name: ascidian anterior sensory vesicle xref: ANISEED:777309 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009893 name: ascidian ocellus xref: ANISEED:874489 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0009892 ! ascidian anterior sensory vesicle [Term] id: UBERON:0009894 name: siphon primordium xref: ANISEED:1210451 is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0009895 name: atrial siphon primordia xref: ANISEED:1210456 is_a: UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009896 name: oral siphon primordia xref: ANISEED:1225922 is_a: UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009897 name: right auditory cortex def: "An auditory cortex that is in the left side of a brain." [OBOL:automatic] xref: FMA:242654 is_a: UBERON:0001393 ! auditory cortex is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009898 name: left auditory cortex def: "An auditory cortex that is in the right side of a brain." [OBOL:automatic] xref: FMA:242656 is_a: UBERON:0001393 ! auditory cortex is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009899 name: pole of cerebral hemisphere def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [Wikipedia:Poles_of_cerebral_hemispheres] xref: Wikipedia:Poles_of_cerebral_hemispheres is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI [Term] id: UBERON:0009906 name: root of optic nerve def: "A nerve root that extends_fibers_into a nerve connecting eye with brain." [OBOL:automatic] synonym: "optic nerve root" EXACT [BIRNLEX:1328] synonym: "optic tract root" EXACT [FMA:84573] synonym: "root of optic tract" EXACT [FMA:84573] xref: BIRNLEX:1328 xref: FMA:84573 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve property_value: editor_note "TODO - check. See comments for optic tract. FMA also has medial root." xsd:string [Term] id: UBERON:0009907 name: sensory root of trigeminal nerve synonym: "radix sensoria (nervus trigeminus [v])" EXACT [FMA:52611] synonym: "radix sensoria nervus trigemini" EXACT OMO:0003011 [FMA:52611, FMA:TA] synonym: "sensory root of the trigeminal nerve" RELATED [BAMS:s5, BAMS:sV] xref: BAMS:s5 xref: BAMS:sV xref: DHBA:12867 xref: FMA:52611 xref: MBA:229 xref: neuronames:1403 xref: SCTID:280188009 is_a: UBERON:0004673 {source="FMA"} ! trigeminal nerve root is_a: UBERON:0010313 ! neural crest-derived structure [Term] id: UBERON:0009908 name: caudal root of abducens nerve synonym: "radix caudalis nervi abducentis" EXACT [ZFA:0000179] xref: TAO:0000179 xref: ZFA:0000179 is_a: UBERON:0002786 ! root of abducens nerve [Term] id: UBERON:0009909 name: rostral root of abducens nerve xref: TAO:0000665 xref: ZFA:0000665 is_a: UBERON:0002786 ! root of abducens nerve [Term] id: UBERON:0009910 name: posterior lateral plate mesoderm subset: efo_slim synonym: "PLPM" EXACT [ZFA:0005042] xref: EFO:0003705 xref: TAO:0005042 xref: ZFA:0005042 is_a: UBERON:0000926 {source="ZFA"} ! mesoderm relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm [Term] id: UBERON:0009911 name: lobule subset: upper_level synonym: "lobulus" EXACT OMO:0003011 [FMA:45737, FMA:TA] xref: FMA:45737 xref: NCIT:C12990 xref: UMLS:C0921005 {source="ncithesaurus:Lobule"} is_a: UBERON:0000063 {source="cjm"} ! organ subunit property_value: editor_note "todo - provide definition. Clearly distinguish between lobules, lobes and acinar parts of glands (see for example lobule of mammary gland)" xsd:string [Term] id: UBERON:0009912 name: anatomical lobe def: "A portion of an organ, such as the liver, lung, breast, or brain." [ncithesaurus:Lobe] subset: upper_level synonym: "lobus" EXACT OMO:0003011 [FMA:45728, FMA:TA] xref: FMA:45728 xref: NCIT:C13393 xref: UMLS:C0796494 is_a: UBERON:0000063 {source="cjm"} ! organ subunit [Term] id: UBERON:0009913 name: renal lobe def: "The portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it[MP]. It is composed of many renal lobules[WP]." [MP:0011381, Wikipedia:Renal_lobe] subset: pheno_slim synonym: "kidney lobe" EXACT [MP:0011381] synonym: "lobi renales" RELATED OMO:0003011 [Wikipedia:Renal_lobe] synonym: "lobi renalis" EXACT OMO:0003004 [Wikipedia:Renal_lobe] synonym: "lobus renalis" EXACT [http://www.mondofacto.com/facts/dictionary?lobus+renalis] xref: FMA:17881 xref: NCIT:C32894 xref: UMLS:C0736382 {source="ncithesaurus:Kidney_Lower_Lobe"} xref: Wikipedia:Renal_lobe is_a: UBERON:0009912 ! anatomical lobe relationship: part_of UBERON:0002113 ! kidney property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: editor_note "todo - add has_part relationships." xsd:string property_value: taxon_notes "human kidneys have multilobar (multipyramidal) architecture while mice and rats have unilobar (unipyramidal) kidneys" xsd:string {source="MP"} [Term] id: UBERON:0009914 name: renal lobule def: "The portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys." [MP:0011382, Wikipedia:Cortical_lobule] comment: Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis subset: pheno_slim synonym: "cortical lobule" RELATED [MP:0011382, Wikipedia:Cortical_lobule] synonym: "cortical lobule of kidney" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "kidney lobule" EXACT [MP:0011382] synonym: "lobuli corticales renis" RELATED OMO:0003011 [Wikipedia:Cortical_lobule] synonym: "lobulus corticalis renalis" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "lobulus renalis" EXACT [] synonym: "renal cortical lobule" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "renculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "reniculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "renunculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] xref: FMA:17670 xref: SCTID:361330004 xref: Wikipedia:Cortical_lobule is_a: UBERON:0009911 ! lobule relationship: part_of UBERON:0009913 {source="FMA"} ! renal lobe [Term] id: UBERON:0009916 name: wall of ureter def: "An anatomical wall that is part of a ureter." [OBOL:automatic] synonym: "ureteral wall" EXACT [FMA:15888] xref: FMA:15888 xref: SCTID:279397004 is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0009917 name: kidney corticomedullary boundary def: "The region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary." [MP:0011376] subset: pheno_slim xref: EMAPA:37886 {source="MA:th"} is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0002113 {source="MP"} ! kidney [Term] id: UBERON:0009918 name: retrotrapezoid nucleus def: "The loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain." [MP:0011406] subset: pheno_slim xref: DHBA:12531 xref: DMBA:17327 xref: MA:0003022 is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:0009919 name: ureter smooth muscle def: "The smooth muscle tissue surrounding the epithelium of the ureter." [MP:0011426] subset: human_reference_atlas subset: pheno_slim synonym: "ureteral smooth muscle" EXACT [MP:0011426] synonym: "ureteral smooth muscle layer" EXACT [EMAPA:28844] xref: EMAPA:28811 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0006855 ! muscular coat of ureter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0009920 name: optic neural crest xref: EHDAA2:0001315 xref: EHDAA:1122 is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest [Term] id: UBERON:0009921 name: hypophyseal tube is_a: UBERON:0000025 ! tube [Term] id: UBERON:0009948 name: clavicular air sac xref: SCTID:2574004 is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009949 name: humeral diverticulum of clavicular air sac is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0009950 name: olfactory bulb plexiform layer synonym: "plexiform layer" BROAD [NLXANAT:20090405] xref: NLXANAT:20090405 is_a: UBERON:0004001 {source="NIFSTD"} ! olfactory bulb layer property_value: editor_note "check if the NIF class is actually a grouping class" xsd:string [Term] id: UBERON:0009951 name: main olfactory bulb def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb] xref: BAMS:MOB xref: MBA:507 xref: MESH:D009830 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: Wikipedia:Olfactory_bulb#Main_olfactory_bulb is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus relationship: mutually_spatially_disjoint_with UBERON:0002590 {source="ABA"} ! prepyriform area relationship: mutually_spatially_disjoint_with UBERON:0002893 {source="ABA"} ! nucleus of lateral olfactory tract relationship: mutually_spatially_disjoint_with UBERON:0004069 {source="ABA"} ! accessory olfactory bulb relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb property_value: external_ontology_notes "the structure in many ontologies called simply 'olfactory bulb' may in fact belong here" xsd:string [Term] id: UBERON:0009952 name: dentate gyrus subgranular zone def: "A narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs." [Wikipedia:Subgranular_zone] synonym: "SGZ" BROAD OMO:0003000 [] synonym: "subgranular zone" EXACT [] synonym: "subgranular zone of dentate gyrus" EXACT [] xref: EMAPA:35831 xref: MA:0003149 xref: MBA:10702 xref: Wikipedia:Subgranular_zone is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/Doublecortin_expression-2.png" xsd:anyURI [Term] id: UBERON:0009953 name: post-embryonic organism def: "A multicellular organism that existence_starts_with a post-embryonic stage." [OBOL:automatic] synonym: "post-hatching organism" NARROW [https://orcid.org/0000-0002-6601-2165] synonym: "post-natal organism" NARROW [https://orcid.org/0000-0002-6601-2165] synonym: "postnatal mouse" NARROW [MA:0002405] synonym: "postnatal organism" EXACT [] synonym: "TS28 mouse" NARROW [MA:0002405] xref: MA:0002405 is_a: UBERON:0000468 ! multicellular organism property_value: seeAlso "https://github.com/obophenotype/uberon/issues/667" xsd:anyURI [Term] id: UBERON:0009954 name: vomeronasal system def: "A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0005725 ! olfactory system property_value: editor_note "check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES]" xsd:string [Term] id: UBERON:0009955 name: neurogenic placode def: "Cranial ectodermal placode with potential to develop into a component of the nervous system, such as nerves or ganglia." [http://orcid.org/0000-0002-6601-2165, PMID:11523831] subset: efo_slim synonym: "neurogenic placodes" EXACT OMO:0003004 [ZFA:0001309] synonym: "placodae neurogenicae" RELATED OMO:0003011 [Wikipedia:Neurogenic_placodes] xref: EFO:0003460 xref: TAO:0001309 xref: Wikipedia:Neurogenic_placodes xref: XAO:0004620 xref: ZFA:0001309 is_a: UBERON:0002546 {source="cjm"} ! cranial placode relationship: develops_from UBERON:2007013 ! preplacodal ectoderm property_value: curator_notes "Includes: trigeminal, otic, lateral line and epibranchial placodes." xsd:string property_value: taxon_notes "While some sensory placodes (otic and olfactory) may have homologues in basal chordates (Wada et al., 1998), the so-called neurogenenic placodes (trigeminal, otic, lateral line and epibranchial placodes) appear to have emerged at a later time (Shimeld and Holland, 2000)" xsd:string {source="NCBIBook:NBK53171"} [Term] id: UBERON:0009956 name: corpuscle of de Quatrefage def: "A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve." [PMID:11523831] synonym: "organ of de Quatrefage" EXACT [] is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009957 name: ciliated pit comment: Development: joins with Hatschek's diverticulum to form Hatschek's pit in the adult. Location: anterior to the mouth. synonym: "pre-oral pit" RELATED [] is_a: UBERON:0006846 ! surface groove [Term] id: UBERON:0009958 name: bladder lumen def: "An anatomical space that is enclosed by a urinary bladder." [OBOL:automatic] synonym: "bladder cavity" EXACT [FMA:15924] synonym: "cavity of urinary bladder" EXACT [FMA:15924] synonym: "lumen of urinary bladder" EXACT [FMA:15924] synonym: "urinary bladder lumen" EXACT [FMA:15924] xref: EHDAA2:0004058 xref: FMA:15924 xref: galen:UrinaryBladderCavity xref: SCTID:279405003 is_a: UBERON:0000464 ! anatomical space relationship: develops_from UBERON:0009844 {source="EHDAA2"} ! urogenital sinus lumen relationship: part_of UBERON:0001255 {source="FMA"} ! urinary bladder [Term] id: UBERON:0009959 name: lumen of oropharynx def: "An anatomical space that is enclosed by a oropharynx." [OBOL:automatic] synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556] synonym: "oropharynx lumen" EXACT [FMA:55095] xref: EHDAA2:0004556 xref: FMA:55095 is_a: UBERON:0000464 ! anatomical space relationship: develops_from UBERON:0006272 {source="EHDAA2"} ! oronasal cavity relationship: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0001731 ! cavity of pharynx [Term] id: UBERON:0009960 name: esophagus smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a esophagus." [OBOL:automatic] synonym: "circular muscle layer of esophagus" EXACT [FMA:67605] synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574] synonym: "inner circular muscle layer of esophagus" EXACT [FMA:67605] xref: EMAPA:37523 {source="MA:th"} xref: FMA:67605 xref: MA:0001574 is_a: UBERON:0012368 ! circular muscle layer of muscular coat relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus [Term] id: UBERON:0009961 name: esophagus smooth muscle longitudinal layer synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575] synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573] synonym: "outer longitudinal muscle layer of esophagus" EXACT [FMA:63573] xref: EMAPA:37524 {source="MA:th"} xref: FMA:63573 xref: MA:0001575 is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus [Term] id: UBERON:0009962 name: excretory gland def: "A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland." [Dorlands_Medical_Dictionary:MerckSource] synonym: "renal gland" NARROW [https://github.com/obophenotype/uberon/issues/1450] xref: BTO:0000431 is_a: UBERON:0002530 {source="BTO"} ! gland relationship: part_of UBERON:8450002 ! excretory system property_value: editor_note "TODO - child terms" xsd:string [Term] id: UBERON:0009963 name: antennal gland def: "Excretory gland situated in the basal article of the antennal peduncle. It functions to rehulate ionic balance." [BTO:0000075, https://orcid.org/0000-0002-6601-2165] synonym: "green gland" EXACT [] xref: BTO:0000075 is_a: UBERON:0009962 {source="BTO"} ! excretory gland property_value: editor_note "cede this term to Arthropod AO" xsd:string property_value: editor_note "consider also classifying this as a renal tubule - or separate terms for coiled/nephridial canal" xsd:string [Term] id: UBERON:0009964 name: crustacean maxillary gland def: "Excretory organ in maxillary segment with duct opening on maxilla." [http://crustacea.nhm.org/glossary/define.html] is_a: UBERON:0009962 {source="BTO"} ! excretory gland property_value: editor_note "cede this term to Arthropod AO" xsd:string property_value: taxon_notes "consider generalizing to include millipedes, centipedes. Function: Two different excretory organs are found among crustaceans: the antennal gland and the maxillary gland. Both have the same basic structure: an end sac and a convoluted duct that may expand into a bladder before opening to the outside. In most adult crustaceans only one or the other gland functions. The functional gland may change during the life cycle. Terminology note: http://crustacea.nhm.org/glossary/define.html?termID=327 suggests green gland as the generic term and antennal as the decapoda term" xsd:string [Term] id: UBERON:0009965 name: coxal gland def: "A gland found in some arthropods, for collecting and excreting urine. The gland comprises an end sac (saccule), a long duct (labyrinth) and a terminal bladder (reservoir). There is generally only one pair (two in some spiders), and they open on the coxae of the walking legs[WP]." [Wikipedia:Coxal_gland] xref: SPD:0000116 xref: TADS:0000080 xref: Wikipedia:Coxal_gland is_a: UBERON:0009962 {source="BTO"} ! excretory gland property_value: editor_note "cede this term to Arthropod AO" xsd:string property_value: taxon_notes "They are found in all arachnids (with the exception of some Acari), and in other chelicerates, such as horseshoe crabs. Homology: The coxal gland is thought to be homologous with the antennal gland of crustaceans" xsd:string [Term] id: UBERON:0009966 name: internodal tract def: "A conducting pathway in the conducting tissue of heart through which electrical activity spreads from the SA node to the AV node." [Wikipedia:Electrical_conduction_system_of_the_heart] synonym: "interatrial conduction tract" EXACT [] synonym: "internodal conduction tract" EXACT [] synonym: "internodal fasciculus" EXACT [FMA:9479] synonym: "internodal tract muscle tissue" EXACT [FMA:9479] xref: FMA:9479 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart property_value: curator_notes "evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial" xsd:string {source="http://www.cvphysiology.com/Arrhythmias/A003.htm"} property_value: editor_note "include 3 subtypes?" xsd:string [Term] id: UBERON:0009967 name: spleen venous sinus synonym: "sinus lienalis" EXACT OMO:0003011 [FMA:TA] synonym: "sinus splenicus" EXACT OMO:0003011 [FMA:TA] synonym: "splenic sinus" EXACT [FMA:62815] synonym: "venous sinus of red pulp of spleen" EXACT [FMA:62815] xref: EMAPA:37751 {source="MA:th"} xref: FMA:62815 xref: MA:0000761 xref: NCIT:C33605 xref: UMLS:C1179415 {source="ncithesaurus:Splenic_Sinus"} is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0006615 {source="cjm"} ! venous sinus relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen relationship: seeAlso UBERON:0003910 ! splenic sinusoid [Term] id: UBERON:0009968 name: primitive superior sagittal sinus xref: EHDAA2:0001527 xref: EHDAA:9876 xref: EMAPA:18636 is_a: UBERON:0006615 {source="cjm"} ! venous sinus relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus property_value: editor_note "consider merging into developed structure" xsd:string [Term] id: UBERON:0009969 name: statoacoustic epithelium synonym: "stato-acoustic epithelium" EXACT [FMA:64804] xref: FMA:64804 is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium [Term] id: UBERON:0009970 name: epithelium of pancreatic duct def: "An epithelium that is part of a pancreatic duct." [OBOL:automatic] subset: efo_slim synonym: "pancreatic duct epithelium" EXACT [FMA:67681] synonym: "pancreatic ductal epithelium" EXACT [FMA:67681] xref: EFO:0002556 xref: FMA:67681 is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0013697 ! exocrine pancreas epithelium is_a: UBERON:0034969 ! epithelial layer of duct relationship: part_of UBERON:0007329 ! pancreatic duct property_value: editor_note "in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them subclasses of this" xsd:string [Term] id: UBERON:0009971 name: principal gastric gland def: "One of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]." [http://www.drugs.com/dict/acid-gland.html, MP:0003892] synonym: "acid gland" EXACT [http://www.drugs.com/dict/acid-gland.html] synonym: "gastric follicle" RELATED [MP:0003892] synonym: "gastric gland" BROAD [MP:0003892] synonym: "glandula gastrica propria" EXACT [FMA:14921] synonym: "main gastric gland" EXACT [FMA:14921] synonym: "oxyntic gland" EXACT [FMA:14921] synonym: "principal gland of fundus of stomach" EXACT [FMA:14923] synonym: "Wassman gland" RELATED [MP:0003892] xref: FMA:14921 xref: FMA:14923 is_a: UBERON:0000325 {source="FMA"} ! gastric gland property_value: external_ontology_notes "FMA has this as part of both the fundus and the body, but these are largely spatially disjoint." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0009972 name: ureteropelvic junction def: "The junction between the ureter and the renal pelvis of the kidney." [MP:0011487] subset: pheno_slim synonym: "pelviureteric junction" EXACT [FMA:15898] synonym: "pelvoureteric junction" EXACT [] xref: EMAPA:37782 {source="MA:th"} xref: FMA:15898 xref: MA:0003021 xref: NCIT:C106203 xref: SCTID:264130006 is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001008 {source="MP"} ! renal system [Term] id: UBERON:0009973 name: ureterovesical junction def: "The valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney." [MP:0011488] subset: pheno_slim synonym: "vesico-ureteral junction" EXACT [MA:0003020] synonym: "vesico-ureteric junction" EXACT [] synonym: "vesicoureteric junction" EXACT [] xref: EMAPA:37783 {source="MA:th"} xref: FMA:15899 xref: MA:0003020 xref: NCIT:C106202 xref: SCTID:261187001 is_a: UBERON:0003978 ! valve is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001008 {source="MP"} ! renal system [Term] id: UBERON:0009974 name: lumen of Rathke's pouch def: "An anatomical cavity that surrounded_by a Rathke's pouch." [OBOL:automatic] synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138] xref: EHDAA2:0004138 xref: EMAPA:25037 is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen is_a: UBERON:0007473 ! lumen of epithelial sac relationship: part_of UBERON:0005356 ! Rathke's pouch [Term] id: UBERON:0009975 name: remnant of lumen of Rathke's pouch synonym: "adenohypophysis invagination" RELATED [EHDAA2:0004139] xref: EHDAA2:0004139 is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen relationship: develops_from UBERON:0009974 ! lumen of Rathke's pouch relationship: part_of UBERON:0002196 ! adenohypophysis property_value: editor_note "requires review" xsd:string [Term] id: UBERON:0009976 name: hypothalamo-hypophyseal system def: "An intrinsic circulatory network that transports hormones from the median eminence of the hypothalamus to the adenohypophysis." [ISBN:0471888893, Wikipedia:Hypophyseal_portal_system] synonym: "hypophyseal portal system" EXACT [Wikipedia:Hypophyseal_portal_system] synonym: "hypothalamic hypophyseal portal system" EXACT [ISBN:0471888893] synonym: "hypothalamo hypophyseal system" RELATED [MESH:A06.407.747.357] synonym: "hypothalamo-hypophyseal system" RELATED [MESH:A06.407.747.357] synonym: "hypothalamohypophyseal portal system" EXACT [] synonym: "portal veins of hypophysis" RELATED [FMA:70860] synonym: "set of portal veins of hypophysis" RELATED [FMA:70860] synonym: "venae portales hypophysiales" EXACT [Wikipedia:Hypophyseal_portal_system] synonym: "venae portales hypophysiales" RELATED OMO:0003011 [Wikipedia:Hypophyseal_portal_system] xref: FMA:70860 xref: MESH:D007030 xref: NCIT:C32759 xref: UMLS:C1512570 {source="ncithesaurus:Hypothalamohypophyseal_Portal_System"} xref: Wikipedia:Hypophyseal_portal_system is_a: UBERON:0005806 ! portal system relationship: never_in_taxon NCBITaxon:32443 {source="ISBN:0471888893"} relationship: part_of UBERON:0000949 ! endocrine system property_value: editor_note "we represent this structure strictly as a system of blood vessels (presumably in line with the FMA). It could also be extended to include neurons and fiber tracts, as per the MESH definition" xsd:string property_value: function_notes "One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). The hypothalamus is responsible for certain metabolic processes and other activities of the autonomic nervous system. It synthesizes and secretes certain neurohormones, often called hypothalamic-releasing hormones, and these in turn stimulate or inhibit the secretion of pituitary hormones. The hypothalamus controls body temperature, hunger, thirst, fatigue, sleep, and circadian cycles" xsd:string property_value: taxon_notes "in lampreys and teleost hormones enter the adenohypophysis by diffusion." xsd:string {source="WP"} [Term] id: UBERON:0009977 name: natal tooth def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)." [MESH:A14.254.860.700.500] synonym: "natal teeth" EXACT OMO:0003004 [GAID:1267] synonym: "natal tooth" RELATED [GAID:1267] xref: GAID:1267 xref: MESH:D009306 is_a: UBERON:0007115 {source="GAID"} ! deciduous tooth [Term] id: UBERON:0009978 name: epicondyle comment: grouping class that collected the entepicondyles and epicondyles icondyles of humerus and femur subset: grouping_class synonym: "epicondylus" RELATED OMO:0003011 [Wikipedia:Epicondyle] xref: FMA:75435 xref: galen:Epicondyle xref: NCIT:C69300 xref: SCTID:333209006 xref: UMLS:C0222681 {source="ncithesaurus:Epicondyle"} xref: Wikipedia:Epicondyle is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ property_value: has_relational_adjective "epicondylar" xsd:string [Term] id: UBERON:0009979 name: condyle def: "An articular prominence of a bone, typically present in pairs, resembling a pair of knuckles. Examples: Condyle of humerus, condyle of femur." [http://www.merriam-webster.com/dictionary/condyle, PHENOSCAPE:ad] synonym: "condylus" EXACT OMO:0003011 [Wikipedia:Condyle_(anatomy)] xref: FMA:75434 xref: galen:Condyle xref: NCIT:C83002 xref: SCTID:91737009 xref: TAO:0002259 xref: UMLS:C0524414 {source="ncithesaurus:Condyle"} xref: Wikipedia:Condyle_(anatomy) is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ property_value: external_definition "Protuberance on a bone that participates in a joint with another bone.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002259", ontology="TAO", source="TAO:wd"} property_value: external_definition "the round prominence at the end of a bone, most often part of a joint - an articulation with another bone[WP][Wikipedia:Condyle_(anatomy)]." xsd:string {source="Wikipedia:Condyle_(anatomy)"} property_value: has_relational_adjective "condylar" xsd:string property_value: has_relational_adjective "condyloid" xsd:string [Term] id: UBERON:0009980 name: condyle of femur def: "A condyle that is part of a distal epiphysis of femur." [OBOL:automatic] subset: human_reference_atlas synonym: "condylus femoralis" EXACT [] synonym: "condylus femoris" EXACT [] synonym: "femoral condyle" EXACT [] synonym: "fibular condyle" RELATED [AAO:0000900] xref: AAO:0000900 xref: FMA:32855 xref: galen:FemoralCondyle xref: NCIT:C114186 xref: SCTID:304912006 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle relationship: part_of UBERON:0004406 ! distal epiphysis of femur relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Convex articular facet of the distal head of the femur that articulates with the proximal head of the fibula.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000900", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0009984 name: medial condyle of femur def: "The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the 'medial epicondyle' and can be palpated by running fingers medially from the patella with the knee in flexion." [Wikipedia:Medial_condyle_of_femur] subset: human_reference_atlas synonym: "c. medialis femoris" RELATED OMO:0003011 [Wikipedia:Medial_condyle_of_femur] synonym: "condylus medialis femoris" EXACT OMO:0003011 [FMA:32858, FMA:TA] synonym: "medial condyle of the femur" RELATED [Wikipedia:Medial_condyle_of_femur] synonym: "medial femoral condyle" RELATED [FMA:32858] xref: FMA:32858 xref: SCTID:182056007 xref: Wikipedia:Medial_condyle_of_femur is_a: UBERON:0009980 ! condyle of femur relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png" xsd:anyURI [Term] id: UBERON:0009985 name: lateral condyle of femur def: "The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters." [Wikipedia:Lateral_condyle_of_femur] subset: human_reference_atlas synonym: "c. lateralis femoris" RELATED OMO:0003011 [Wikipedia:Lateral_condyle_of_femur] synonym: "condylus lateralis femoris" EXACT OMO:0003011 [FMA:32859, FMA:TA] synonym: "lateral condyle of the femur" RELATED [Wikipedia:Lateral_condyle_of_femur] synonym: "lateral femoral condyle" RELATED [FMA:32859] xref: FMA:32859 xref: SCTID:182057003 xref: Wikipedia:Lateral_condyle_of_femur is_a: UBERON:0009980 ! condyle of femur relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png" xsd:anyURI [Term] id: UBERON:0009986 name: lateral epicondyle of femur def: "The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle." [Wikipedia:Lateral_epicondyle_of_the_femur] subset: human_reference_atlas synonym: "e. lateralis femoris" RELATED OMO:0003011 [Wikipedia:Lateral_epicondyle_of_the_femur] synonym: "epicondylus lateralis (femur)" EXACT [FMA:32867] synonym: "epicondylus lateralis femoris" EXACT OMO:0003011 [FMA:32867, FMA:TA] synonym: "lateral femoral epicondyle" RELATED [Wikipedia:Lateral_epicondyle_of_the_femur] xref: FMA:32867 xref: galen:LateralFemoralEpicondyle xref: SCTID:209275007 xref: Wikipedia:Lateral_epicondyle_of_the_femur is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0009985 {source="FMA"} ! lateral condyle of femur relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png" xsd:anyURI [Term] id: UBERON:0009987 name: medial epicondyle of femur def: "The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or 'tendinous insertion', of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius." [Wikipedia:Medial_epicondyle_of_the_femur] subset: human_reference_atlas synonym: "epicondylus medialis (femur)" EXACT [FMA:32864] synonym: "epicondylus medialis femoris" RELATED OMO:0003011 [Wikipedia:Medial_epicondyle_of_the_femur] synonym: "medial femoral epicondyle" RELATED [Wikipedia:Medial_epicondyle_of_the_femur] xref: FMA:32864 xref: galen:MedialFemoralEpicondyle xref: SCTID:209172001 xref: Wikipedia:Medial_epicondyle_of_the_femur is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0009984 {source="FMA"} ! medial condyle of femur relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray345.png" xsd:anyURI [Term] id: UBERON:0009988 name: condyle of humerus def: "The distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae." [http://www.medilexicon.com/medicaldictionary.php?t=19715] synonym: "condylus humeri" EXACT OMO:0003011 [] synonym: "humeral condyle" EXACT [FMA:23377] xref: FMA:23377 xref: SCTID:361778001 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle relationship: mutually_spatially_disjoint_with UBERON:0016497 ! epicondyle of humerus relationship: part_of UBERON:0004404 ! distal epiphysis of humerus property_value: taxon_notes "As in the N.A., the Condylus humeri is the whole distal end of the bone except the epicondyles. The Capitulum humeri is present in Carnivora, more distinctly in the cat than in the dog. The Fossa coronoidea, present in the cat is medial to the Fossa radialis and accommodates the Processus coronoideus medialis ulnae when the elbow is flexed. A Foramen supratrochleare occurs in carnivora and occasionally in pig.[NOMINA ANATOMICA VETERINARIA (2005)]" xsd:string [Term] id: UBERON:0009989 name: condyle of tibia def: "One of the lateral or medial condyles of the tibia." [Wikipedia:Tibial_condyle] synonym: "tibial condyle" EXACT [AAO:0000899] xref: AAO:0000899 xref: SCTID:182062002 xref: Wikipedia:Tibial_condyle is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle relationship: part_of UBERON:0008772 ! proximal epiphysis of tibia property_value: external_definition "Convex articular facet of the distal head of the femur that articulates with the proximal head of the tibia.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000899", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0009990 name: medial condyle of tibia def: "The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]." [Wikipedia:Medial_condyle_of_tibia] subset: human_reference_atlas synonym: "c. medialis tibiae" RELATED OMO:0003011 [Wikipedia:Medial_condyle_of_tibia] synonym: "condylus medialis (tibia)" EXACT [FMA:35445] synonym: "condylus medialis tibiae" EXACT OMO:0003011 [FMA:35445, FMA:TA] synonym: "medial condyle of the tibia" RELATED [Wikipedia:Medial_condyle_of_tibia] synonym: "medial tibial condyle" RELATED [Wikipedia:Medial_condyle_of_tibia] xref: FMA:35445 xref: galen:MedialTibialCondyle xref: SCTID:182066004 xref: Wikipedia:Medial_condyle_of_tibia is_a: UBERON:0009989 ! condyle of tibia relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray257.png" xsd:anyURI [Term] id: UBERON:0009991 name: lateral condyle of tibia def: "The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]." [Wikipedia:Lateral_condyle_of_tibia] subset: human_reference_atlas synonym: "c. lateralis tibiae" RELATED OMO:0003011 [Wikipedia:Lateral_condyle_of_tibia] synonym: "condylus lateralis (tibia)" EXACT [FMA:35448] synonym: "condylus lateralis tibiae" EXACT OMO:0003011 [FMA:35448, FMA:TA] xref: FMA:35448 xref: SCTID:182067008 xref: Wikipedia:Lateral_condyle_of_tibia is_a: UBERON:0009989 ! condyle of tibia relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray257.png" xsd:anyURI [Term] id: UBERON:0009992 name: cranial sensory ganglion def: "The ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons." [http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion] comment: ontology notes: has no subtypes in FMA synonym: "cranial nerve sensory ganglion" EXACT [FMA:5887] synonym: "ganglion sensorium cranialium" EXACT [FMA:5887] synonym: "ganglion sensorium nervi cranialis" EXACT OMO:0003011 [FMA:5887, FMA:TA] synonym: "sensory ganglion of cranial nerve" EXACT [FMA:5887] xref: FMA:5887 is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion is_a: UBERON:0001800 {source="FMA"} ! sensory ganglion [Term] id: UBERON:0009993 name: primary chorionic villus def: "A chorionic villus that is a solid outgrowth of the cytotrophoblast that protrudes into the syncytiotrophoblast." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] xref: NCIT:C34261 xref: UMLS:C1514421 {source="ncithesaurus:Primary_Chorionic_Villus"} is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus [Term] id: UBERON:0009994 name: secondary chorionic villus def: "A chorionic villus that is has a core of loose connective tissue, which in humans grows into the primary villi about the third week of development." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] xref: NCIT:C34291 xref: UMLS:C1519213 {source="ncithesaurus:Secondary_Chorionic_Villus"} is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus [Term] id: UBERON:0009995 name: tertiary chorionic villus def: "Tertiary chorionic villi contain embryonic blood vessels that develop from mesenchymal cells in the loose connective tissue core. These blood vessels connect up with vessels that develop in the chorion and connecting stalk and begin to circulate embryonic blood about the third week of development in humans." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] xref: NCIT:C34310 xref: UMLS:C1515280 {source="ncithesaurus:Tertiary_Chorionic_Villus"} is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus [Term] id: UBERON:0010000 name: multicellular anatomical structure def: "An anatomical structure that has more than one cell as a part." [CARO:0010000] subset: common_anatomy subset: upper_level synonym: "multicellular structure" EXACT [FBbt:00100313] xref: CARO:0010000 xref: FBbt:00100313 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000061 ! anatomical structure relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0010001 name: cell cluster organ def: "A small cluster of cells of various types which form a discrete structure, largely delimited by a morphological boundary and whose components work together to make the whole structure capable of a specific function." [CARO:0010001] comment: Examples include arthropod sensilla. subset: upper_level xref: CARO:0010001 xref: FBbt:00007229 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000062 {source="CARO"} ! organ is_a: UBERON:0034922 {source="CARO"} ! cell cluster [Term] id: UBERON:0010002 name: pulmonary neuroendocrine body def: "Corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors." [MP:0010921] subset: pheno_slim synonym: "NEB" RELATED OMO:0003000 [MP:0010921] synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921] xref: EMAPA:37943 {source="MA:th"} is_a: UBERON:0000061 {source="MP"} ! anatomical structure relationship: part_of UBERON:0000115 ! lung epithelium relationship: part_of UBERON:8600018 ! neuroendocrine system [Term] id: UBERON:0010005 name: placental labyrinth villous def: "The vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation." [MP:0011522] subset: pheno_slim synonym: "placental labyrinth villi" RELATED OMO:0003004 [] synonym: "villous of placental labyrinth" EXACT [] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth [Term] id: UBERON:0010006 name: placenta intervillous maternal lacunae def: "The spaces of the placenta occupied by maternal blood, into which the fetal labyrinth villi project." [MP:0011525] subset: pheno_slim is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0012466 ! extraembryonic cavity relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth [Term] id: UBERON:0010007 name: placenta fetal blood space def: "The spaces of the placenta occupied by fetal blood, primarily within the fetal labyrinth villi." [MP:0011526] subset: pheno_slim is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0012466 ! extraembryonic cavity relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth [Term] id: UBERON:0010008 name: placental cotyledon def: "Round structure consisting of chorionic villi[PMID]. A separation of the decidua basalis of the placenta, separated by placental septa. Each cotyledon consists of a main stem of a chorionic villus as well as its branches and subbranches. The cotyledons receive fetal blood from chorionic vessels, which branch off cotyledon vessels into the cotyledons, which, in turn, branch into capillaries. The cotyledons are surrounded by maternal blood, which can exchange oxygen and nutrients with the fetal blood in the capillaries[WP]." [PMID:19829370, Wikipedia:Placental_cotyledon] synonym: "cotyledon" BROAD [] synonym: "discoid placenta" RELATED [] synonym: "placenta cotyledon" EXACT [] xref: NCIT:C34135 xref: SCTID:256491001 xref: UMLS:C0242769 {source="ncithesaurus:Cotyledon"} xref: Wikipedia:Placental_cotyledon is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0002450 ! decidua property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/30/Placental_cotyledon.png" xsd:anyURI property_value: taxon_notes "in ruminants, this is" xsd:string property_value: taxon_notes "Rodents have a single cotyledon (called a discoid placenta), whereas humans have multiple cotyledons, although they are consolidated into a cluster that resembles a single disc[PMID:19829370]" xsd:string [Term] id: UBERON:0010009 name: aggregate regional part of brain def: "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NLXANAT:20090509] subset: non_informative synonym: "set of nuclei of neuraxis" RELATED [FMA:256381] xref: NLXANAT:20090509 is_a: UBERON:0034923 ! disconnected anatomical group relationship: part_of UBERON:0000955 ! brain property_value: editor_note "May be obsoleted." xsd:string [Term] id: UBERON:0010010 name: basal nucleus of telencephalon def: "A group of neurons in the basal forebrain that has wide projections to the neocortex and is rich in acetylcholine and choline acetyltransferase. It undergoes degeneration in paralysis agitans and Alzheimer's disease." [BTO:0001480] synonym: "basal forebrain nucleus" RELATED [NeuroNames:275] synonym: "basal magnocellular nucleus" RELATED [NeuroNames:275] synonym: "basal magnocellular nucleus (substantia innominata)" EXACT [FMA:61887] synonym: "basal nuclei of Meynert" EXACT [FMA:61887] synonym: "basal nucleus" EXACT [BIRNLEX:1107] synonym: "basal nucleus (Meynert)" RELATED [BAMS:B] synonym: "basal nucleus of Meynert" EXACT [FMA:61887] synonym: "basal substance of telencephalon" EXACT [FMA:61887] synonym: "ganglion of Meynert" EXACT [FMA:61887] synonym: "magnocellular nucleus of the pallidum" RELATED [NeuroNames:275] synonym: "magnocellular preoptic nucleus" RELATED [NeuroNames:275] synonym: "Meynert's nucleus" EXACT [FMA:61887] synonym: "nucleus basalis" EXACT [BIRNLEX:1107] synonym: "nucleus basalis (Meynert)" RELATED OMO:0003011 [NeuroNames:275] synonym: "nucleus basalis Meynert" RELATED OMO:0003011 [NeuroNames:275] synonym: "nucleus basalis of Meynert" EXACT [BIRNLEX:1107] synonym: "nucleus basalis telencephali" RELATED OMO:0003011 [Wikipedia:Nucleus_basalis_of_Meynert] synonym: "nucleus of the horizontal limb of the diagonal band (Price-Powell)" RELATED [NeuroNames:275] synonym: "substantia basalis telencephali" EXACT OMO:0003011 [FMA:TA] xref: BAMS:MA xref: BAMS:MCPO xref: BIRNLEX:1107 xref: BTO:0001480 xref: DHBA:10353 xref: FMA:61887 xref: HBA:4308 xref: MESH:D020532 xref: neuronames:275 {source="BIRNLEX:1107"} xref: PBA:10141 xref: SCTID:369109003 xref: UMLS:C0004788 {source="BIRNLEX:1107"} xref: Wikipedia:Basal_optic_nucleus_of_Meynert xref: Wikipedia:Nucleus_basalis_of_Meynert is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0003017 {source="WP"} ! substantia innominata property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG" xsd:anyURI property_value: external_ontology_notes "MA has basal nucleus as synonym for BG." xsd:string {external_ontology="MA"} property_value: function_notes "rich in acetylcholine and choline acetyltransferase" xsd:string {source="WP"} property_value: location_notes "The NBM is inferior to the globus pallidus and within an area known as the substantia innominata" xsd:string [Term] id: UBERON:0010011 name: collection of basal ganglia def: "Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum." [BIRNLEX:826] subset: human_reference_atlas subset: pheno_slim synonym: "basal ganglia" EXACT [FMA:84013] synonym: "basal ganglia set" EXACT [FMA:84013] synonym: "basal nuclei" RELATED [] synonym: "basal nuclei (basal ganglia)" EXACT [PBA:BN] synonym: "cerebral nuclei" RELATED [NeuroNames:2677] synonym: "set of basal ganglia" EXACT [FMA:84013] synonym: "set of basal nuclei" RELATED [FMA:84013] synonym: "subcortical nuclei" RELATED [NeuroNames:2677] xref: BAMS:BG xref: BIRNLEX:826 xref: BM:Tel-BG xref: EMAPA:32673 xref: FMA:84013 xref: GAID:617 xref: HBA:4276 xref: MA:0000184 xref: MBA:623 xref: MESH:D001479 xref: NCIT:C12447 xref: neuronames:2677 xref: PBA:4001 xref: UMLS:C0004781 {source="ncithesaurus:Basal_Ganglia"} xref: VHOG:0001696 xref: Wikipedia:Basal_ganglia is_a: UBERON:0010009 {source="FMA"} ! aggregate regional part of brain relationship: part_of UBERON:0000454 {source="FMA"} ! cerebral subcortex relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done." xsd:string property_value: homology_notes "All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001696", ontology="VHOG", source="DOI:10.1016/j.cub.2011.05.001 Stephenson-Jones M, Samuelsson E, Ericsson J, Robertson B, Grillner S, Evolutionary conservation of the basal ganglia as a common vertebrate mechanism for action selection. Current Biology (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0010012 name: upper beak synonym: "maxillary beak" RELATED [] synonym: "rostrum maxillare" RELATED [] synonym: "upper mandible" RELATED SENSU [] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001709 ! upper jaw region relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0010013 name: lower beak synonym: "lower mandible" RELATED SENSU [] synonym: "mandibular beak" RELATED [] synonym: "rostrum mandibulare" RELATED [] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001710 ! lower jaw region relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0010014 name: epigonal organ def: "An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system." [http://www.fishbase.org/glossary/Glossary.php?q=epigonal+organ] synonym: "subgonal organ" EXACT [] is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0015212 ! lateral structure relationship: never_in_taxon NCBITaxon:7863 {source="Wikipedia"} [Term] id: UBERON:0010015 name: ventral patch of Leydig's organ def: "The ventralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000040 ! Leydig's organ property_value: taxon_notes "Gradation varies in species. In the stingray, two distinct lobes are seen, in the banded dogfish each lobe is divided into lobules [Homma et al 1984]" xsd:string [Term] id: UBERON:0010016 name: spiral valve of intestine def: "Coiled structure in the lumen of the small intestine that increases the length of the route through the digestive tract.[WP,cjm,Kardong]." [Wikipedia:Spiral_valve] synonym: "intestinal spiral valve" EXACT [] synonym: "spiral valve" BROAD [] xref: Wikipedia:Spiral_valve is_a: UBERON:0003978 {source="cjm"} ! valve is_a: UBERON:0035118 ! material entity in digestive tract relationship: never_in_taxon NCBITaxon:32523 {source="Wikipedia"} relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0010017 name: spiral valve of cystic duct def: "A series of crescentic folds of mucous membrane somewhat spirally arranged on the interior of the gallbladder and continuing into the cystic duct." [http://dictionary.reference.com/browse/spiral+valve, Wikipedia:Spiral_valves_of_Heister] synonym: "Heister's valve" EXACT [FMA:15855] synonym: "plica spiralis" EXACT OMO:0003011 [FMA:TA] synonym: "plica spiralis (ductus cysticus)" EXACT [FMA:15855] synonym: "spiral fold of cystic duct" EXACT [FMA:15855] synonym: "valve of Heister" EXACT [] xref: FMA:15855 xref: SCTID:270125000 xref: Wikipedia:Spiral_valves_of_Heister is_a: UBERON:0003978 {source="FMA"} ! valve relationship: part_of UBERON:0001152 ! cystic duct [Term] id: UBERON:0010018 name: spiral valve of conus arteriosus def: "The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs)." [http://people.eku.edu/ritchisong/342notes9.html] xref: AAO:0010251 xref: http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter21/medialib/Kardong_fig_12_29.html is_a: UBERON:0003978 {source="cjm"} ! valve relationship: never_in_taxon NCBITaxon:32524 relationship: part_of UBERON:0003983 {source="AAO"} ! conus arteriosus property_value: taxon_notes "found in dipnoans and amphibians" xsd:string property_value: taxon_notes "The spiral valve is considered to have evolved from the right member of the four embryonic endocardial ridges (Goodrich, 1930 - via Morris 1974)" xsd:string [Term] id: UBERON:0010019 name: spiracle (sensu Vertebrata) def: "A small hole behind each eye that opens to the mouth in some fish. In the primitive jawless fish the first gill opening immediately behind the mouth is essentially similar to the other gill openings." [ISBN:0073040584, Wikipedia:Spiracle#Vertebrates] synonym: "spiracle" BROAD SENSU [NCBITaxon:7742] synonym: "vertebrate spiracle" EXACT [] xref: Wikipedia:Spiracle#Vertebrates is_a: UBERON:0003102 {source="cjm"} ! surface structure relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 relationship: never_in_taxon NCBITaxon:32523 relationship: part_of UBERON:0001004 ! respiratory system relationship: present_in_taxon NCBITaxon:119203 property_value: external_ontology_notes "GO term spiracle morphogenesis, open tracheal system - does not refer to this structure" xsd:string {isAbout="GO:0035277"} property_value: taxon_notes "In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups." xsd:string property_value: taxon_notes "The spiracle is still found in all cartilaginous fish except chimaeras, and in bony fishes in the coelacanth, sturgeon, paddlefish and bichirs. It is also seen as an otic notch in the skull of the extinct labyrinthodonts, and is thought to be associated with the ear opening in amniotes and frogs" xsd:string {source="WP"} [Term] id: UBERON:0010020 name: tubotympanic recess epithelium def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [ISBN:0124020607, VHOG:0001297] synonym: "tubotympanic recess" RELATED [VHOG:0001297] xref: EHDAA2:0004115 xref: EHDAA:6772 xref: EMAPA:17002 xref: MA:0001218 xref: NCIT:C34318 xref: SCTID:361516008 xref: UMLS:C1284046 {source="ncithesaurus:Tubotympanic_Recess"} xref: VHOG:0001297 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac is_a: UBERON:0015813 ! middle ear epithelium relationship: develops_from UBERON:0007122 {source="EHDAA2", source="ISBN:0073040584", source="PMID:11237469"} ! pharyngeal pouch 1 property_value: homology_notes "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001297", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417", source="http://bgee.unil.ch/"} [Term] id: UBERON:0010021 name: dorsal part of pharyngeal pouch 1 synonym: "dorsal 1st branchial pouch" EXACT [] synonym: "dorsal branchial pouch 1 endoderm" RELATED [] synonym: "dorsal elongation of first pouch endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 1" EXACT [] synonym: "dorsal pharyngeal pouch 1 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 property_value: development_notes "in humans, dorsal diverticulum deepens as the tubotympanic recess to form the auditory tube" xsd:string {source="ISBN:1607950324"} [Term] id: UBERON:0010022 name: ventral part of pharyngeal pouch 1 synonym: "ventral 1st branchial pouch" EXACT [] synonym: "ventral branchial pouch 1 endoderm" RELATED [] synonym: "ventral elongation of first pouch endoderm" RELATED [] synonym: "ventral pharyngeal pouch 1" EXACT [] synonym: "ventral pharyngeal pouch 1 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 property_value: development_notes "in humans, the ventral portion of pouches 1 and 2 are obliterated by the developing tongue" xsd:string {source="ISBN:1607950324"} [Term] id: UBERON:0010023 name: dorsal part of pharyngeal pouch 2 synonym: "dorsal 2nd branchial pouch" EXACT [] synonym: "dorsal branchial pouch 2 endoderm" RELATED [] synonym: "dorsal elongation of second pouch endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 2" EXACT [] synonym: "dorsal pharyngeal pouch 2 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 property_value: development_notes "in humans, persists as the tonsillar fossa - the endodermal lining covers the mesodermal lymphatic tissue to form the palatine tonsil[ISBN:1607950324]. the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract" xsd:string {source="MP"} [Term] id: UBERON:0010024 name: ventral part of pharyngeal pouch 2 synonym: "ventral 2nd branchial pouch" EXACT [] synonym: "ventral branchial pouch 2 endoderm" RELATED [] synonym: "ventral elongation of second pouch endoderm" RELATED [] synonym: "ventral pharyngeal pouch 2" EXACT [] synonym: "ventral pharyngeal pouch 2 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 property_value: development_notes "in humans, the ventral portion of pouches 1 and 2 are obliterated by the developing tongue" xsd:string {source="ISBN:1607950324"} [Term] id: UBERON:0010025 name: dorsal part of pharyngeal pouch 3 synonym: "cranial dorsal aspect of third dorsal pharyngeal pouch" RELATED [] synonym: "dorsal 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0000409] synonym: "dorsal 3rd branchial pouch" EXACT [] synonym: "dorsal branchial pouch 3 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 3" EXACT [] synonym: "dorsal pharyngeal pouch 3 endoderm" RELATED [] synonym: "dorsal wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0000409 xref: EMAPA:16758 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 property_value: development_notes "Derivatives of the dorsal wings include the inferior parathyroid glands[WP] in mammals, the cranial dorsal aspect of the third pouch generates the inferior parathyroids (or parathyroid III)" xsd:string {source="MP"} [Term] id: UBERON:0010026 name: ventral part of pharyngeal pouch 3 synonym: "caudal ventral aspect of third dorsal pharyngeal pouch" RELATED [] synonym: "ventral 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0002173] synonym: "ventral 3rd branchial pouch" EXACT [] synonym: "ventral branchial pouch 3 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 3" EXACT [] synonym: "ventral pharyngeal pouch 3 endoderm" RELATED [] synonym: "ventral wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0002173 xref: EMAPA:16759 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 property_value: development_notes "The ventral wings fuse to form the cytoreticular cells of the thymus[WP] the caudal ventral part of the pouch gives rise to the thymus epithelium" xsd:string {source="MP"} [Term] id: UBERON:0010027 name: dorsal part of pharyngeal pouch 4 synonym: "dorsal 4th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 4 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 4" EXACT [] synonym: "dorsal pharyngeal pouch 4 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] id: UBERON:0010028 name: ventral part of pharyngeal pouch 4 synonym: "ventral 4th branchial pouch" EXACT [] synonym: "ventral branchial pouch 4 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 4" EXACT [] synonym: "ventral pharyngeal pouch 4 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] id: UBERON:0010029 name: dorsal part of pharyngeal pouch 5 synonym: "dorsal 5th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 5 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 5" EXACT [] synonym: "dorsal pharyngeal pouch 5 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] id: UBERON:0010030 name: ventral part of pharyngeal pouch 5 synonym: "ventral 5th branchial pouch" EXACT [] synonym: "ventral branchial pouch 5 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 5" EXACT [] synonym: "ventral pharyngeal pouch 5 endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] id: UBERON:0010031 name: 6th arch mesenchyme def: "Mesenchyme that is part of a pharyngeal arch 6." [OBOL:automatic] synonym: "6th branchial arch mesenchyme" RELATED [] synonym: "6th pharyngeal arch mesenchyme" EXACT [] synonym: "pharyngeal arch 6 mesenchyme" RELATED [] xref: EHDAA2:0004076 xref: EMAPA:32765 xref: FMA:318209 is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region relationship: part_of UBERON:0003117 ! pharyngeal arch 6 [Term] id: UBERON:0010032 name: anterior part of tongue def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [Wikipedia:Anterior_tongue] subset: human_reference_atlas synonym: "anterior 2/3 of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "anterior 2/3 of tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "anterior two thirds of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "apex linguae" RELATED [Wikipedia:Anterior_tongue] synonym: "apex of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "buccal part of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "front of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "oral part of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "pars anterior dorsi linguae" RELATED OMO:0003011 [Wikipedia:Anterior_tongue] xref: EMAPA:37437 {source="MA:th"} xref: FMA:229084 xref: NCIT:C32130 xref: UMLS:C0226946 {source="ncithesaurus:Apex_of_the_Tongue"} xref: Wikipedia:Anterior_tongue is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0006260 ! lingual swellings relationship: part_of UBERON:0001723 ! tongue relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg" xsd:anyURI property_value: development_notes "The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue" xsd:string property_value: external_ontology_notes "check NCIT" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0010033 name: posterior part of tongue def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)." [Wikipedia:Posterior_tongue] synonym: "base of the tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "base of tongue" EXACT [Wikipedia:Posterior_tongue] synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645] synonym: "pars posterior dorsi linguae" EXACT OMO:0003011 [Wikipedia:Posterior_tongue] synonym: "pars posterior linguae" EXACT OMO:0003011 [FMA:TA] synonym: "pars postsulcalis (dorsum linguae)" EXACT [FMA:54645] synonym: "pharyngeal part of the tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "pharyngeal part of tongue" EXACT [FMA:54645] synonym: "pharyngeal portion of dorsum of tongue" EXACT [FMA:54645] synonym: "posterior 1/3 of the tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "posterior part of dorsum of tongue" EXACT [FMA:54645] synonym: "posterior third of tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "postsulcal part of dorsum of tongue" EXACT [FMA:54645] synonym: "radix linguae" RELATED [Wikipedia:Posterior_tongue] xref: EMAPA:37438 {source="MA:th"} xref: FMA:54645 xref: MA:0003031 xref: NCIT:C12228 xref: SCTID:362094001 xref: UMLS:C0226958 {source="ncithesaurus:Base_of_the_Tongue"} xref: Wikipedia:Posterior_tongue is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009471 {source="FMA"} ! dorsum of tongue property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg" xsd:anyURI [Term] id: UBERON:0010034 name: copula linguae def: "A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]." [Wikipedia:Copula_linguae] synonym: "copula" EXACT [EHDAA2:0004611] synonym: "copula linguae" RELATED OMO:0003011 [Wikipedia:Copula_linguae] xref: EHDAA2:0004611 xref: SCTID:361424000 xref: Wikipedia:Copula_linguae is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/85/Gray980.png" xsd:anyURI property_value: editor_note "add new term for Hypobranchial_eminence?" xsd:string [Term] id: UBERON:0010036 name: anterior tegmental nucleus def: "A group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 )." [neuronames:1115] xref: BAMS:AT xref: BAMS:ATg xref: DMBA:17008 xref: EMAPA:37416 {source="MA:th"} xref: MA:0001055 xref: MBA:231 xref: neuronames:1115 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009661 ! midbrain nucleus [Term] id: UBERON:0010038 name: fundic gastric gland def: "The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct." [Wikipedia:Fundic_glands] synonym: "fundal gland" EXACT [] synonym: "fundus gland" EXACT [] synonym: "gastric fundal gland" EXACT [] synonym: "gastric fundus gland" EXACT [] synonym: "gastric gland of fundus of stomach" EXACT [] synonym: "glandulae gastricae" RELATED OMO:0003011 [Wikipedia:Fundic_glands] xref: EMAPA:27161 xref: NCIT:C32643 xref: SCTID:268338004 xref: UMLS:C0017130 {source="ncithesaurus:Fundic_Gland"} xref: Wikipedia:Fundic_glands is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 ! mucous gland relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg" xsd:anyURI property_value: editor_note "Consider FMA:14923 ! Principal gland of fundus of stomach. Added part_of to mucosa to be consistent with FMA pattern (note that Kardong places this in the glandular epithelium)" xsd:string [Term] id: UBERON:0010039 name: food storage organ def: "An organ of the digestive tract that is capable of retaining and storing food." [https://orcid.org/0000-0002-6601-2165] subset: functional_classification subset: grouping_class xref: BSA:0000123 xref: TADS:0000172 xref: TGMA:0001041 is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system property_value: curator_notes "This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates" xsd:string [Term] id: UBERON:0010040 name: stomach non-glandular epithelium def: "Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands." [ISBN:0073040584] synonym: "stomach aglandular epithelium" EXACT [] synonym: "stomach squamous epithelium" RELATED [ISBN:0123813611] is_a: UBERON:0001276 ! epithelium of stomach is_a: UBERON:0011952 ! non-glandular epithelium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Mammalian_Stomachs_remake.png" xsd:anyURI property_value: editor_note "OWL definition to be added later" xsd:string property_value: editor_note "todo - clarify if mucus glands are also excluded, in addition to gastric glands. See notes for rumen." xsd:string property_value: taxon_notes "this region may develop from the base of the esophagus (some herbivores) - in rodents, loss of the gastric glands in the mucosa leavea a nonglandular epithelial stomach in which smooth muscle contractions knead and mix digesta. This can be keratinized." xsd:string [Term] id: UBERON:0010041 name: median ovary is_a: UBERON:0000992 ! ovary property_value: taxon_notes "In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo" xsd:string {source="Wikipedia:Ovary#In_other_animals"} [Term] id: UBERON:0010042 name: 1st arch mesenchyme def: "Mesenchyme that is part of a pharyngeal arch 1." [OBOL:automatic] synonym: "mesenchyme of 1st arch" EXACT [EMAPA:16128] xref: EMAPA:16128 is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region relationship: part_of UBERON:0004362 ! pharyngeal arch 1 [Term] id: UBERON:0010045 name: 1st arch maxillary mesenchyme def: "Mesenchyme that is part of a 1st arch maxillary component." [OBOL:automatic] synonym: "maxillary component mesenchyme" RELATED [] synonym: "maxillary mesenchyme" RELATED [] synonym: "mesenchyme of maxillary component" EXACT [EMAPA:16391] xref: EHDAA2:0000041 xref: EMAPA:16391 is_a: UBERON:0010042 ! 1st arch mesenchyme relationship: part_of UBERON:0007238 ! 1st arch maxillary component [Term] id: UBERON:0010046 name: entire pharyngeal arch associated mesenchyme def: "The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells." [https://orcid.org/0000-0002-6601-2165, XAO:0004524] synonym: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550] synonym: "entire branchial arch associated mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459] xref: EHDAA2:0001459 xref: EMAPA:16550 xref: XAO:0004524 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: part_of UBERON:0008814 {source="EHDAA2"} ! pharyngeal arch system [Term] id: UBERON:0010047 name: oral gland alt_id: UBERON:0003293 def: "Gland of the epithelium lining the oral cavity. The most common are the salivary glands." [ISBN:0073040584] subset: human_reference_atlas synonym: "buccal gland" NARROW [] synonym: "gland of oral opening" RELATED [] synonym: "gland of oral region" RELATED [] synonym: "mouth gland" RELATED [] synonym: "oral cavity gland" RELATED [] synonym: "oral region gland" RELATED [] xref: EHDAA2:0001327 xref: EHDAA:2181 xref: EMAPA:16572 xref: EMAPA:16723 xref: VHOG:0000652 is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003408 ! gland of digestive tract relationship: part_of UBERON:0000165 ! mouth relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "Note that Kardong classifies lacrimal glands here. EHDAA2 includes pituitary primordium, as this develops from oral mucosa" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0010048 name: Duvernoy's gland def: "A gland situated on the upper lip posterior to the eye, found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth." [http://public.wsu.edu/~kkardong/Web%20of%20KVK_06b/Publications/reptile%20glands.pdf, ISBN:0073040584, UBERON:cjm, Wikipedia:Duvernoy's_gland] comment: positioned posterior to the eye, encased in a thin cover of connective tissue, and consists mostly of serous cells. A single, short duct extends anteromedially from the lumen of the gland to the base of the posterior fangs.[WP] xref: Wikipedia:Duvernoy's_gland is_a: UBERON:0010047 ! oral gland [Term] id: UBERON:0010049 name: supralabial gland def: "Oral gland in reptiles situated immediately above the lip." [ISBN:0073040584] xref: Wikipedia:Duvernoy's_gland is_a: UBERON:0010047 ! oral gland relationship: never_in_taxon NCBITaxon:40674 [Term] id: UBERON:0010050 name: infralabial gland def: "Oral gland in reptiles situated immediately below the lip." [ISBN:0073040584] xref: Wikipedia:Duvernoy's_gland is_a: UBERON:0010047 ! oral gland relationship: never_in_taxon NCBITaxon:40674 [Term] id: UBERON:0010051 name: dorsal patch of Leydig's organ def: "The dosralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000040 ! Leydig's organ property_value: taxon_notes "Gradation varies in species. In the stingray, two distinct lobes are seen, in the banded dogfish each lobe is divided into lobules [Homma et al 1984]" xsd:string [Term] id: UBERON:0010052 name: mucosa of dorsum of tongue def: "A mucosa that is part of a dorsum of tongue." [OBOL:automatic] synonym: "mucosa of dorsal surface of tongue" EXACT [] xref: FMA:74871 xref: SCTID:245835003 is_a: UBERON:0005020 ! mucosa of tongue relationship: part_of UBERON:0009471 ! dorsum of tongue property_value: development_notes "develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN:1607950324" xsd:string property_value: editor_note "check surface terms" xsd:string [Term] id: UBERON:0010053 name: echolocation organ def: "Any organ that plays a role in the process of echolocation." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000062 ! organ relationship: never_in_taxon NCBITaxon:314146 [Term] id: UBERON:0010054 name: malleus cartilage element def: "A malleus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] xref: EMAPA:18229 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015018 ! malleus endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation [Term] id: UBERON:0010055 name: stapes cartilage element def: "A stapes endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] xref: EMAPA:18230 is_a: UBERON:0011607 {source="http://people.eku.edu/ritchisong/342notes4.htm"} ! hyomandibular cartilage is_a: UBERON:0015016 ! stapes endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation relationship: part_of UBERON:0001686 ! auditory ossicle bone property_value: editor_note "TODO - check relationship to Recihert's" xsd:string property_value: taxon_notes "The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks." xsd:string [Term] id: UBERON:0010056 name: future tongue def: "A compound organ that has the potential to develop into a tongue." [OBOL:automatic] xref: EHDAA2:0000696 xref: EHDAA:2951 is_a: UBERON:0003103 {source="EHDAA2"} ! compound organ is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0010057 name: hypopharyngeal eminence synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic] xref: EHDAA2:0000799 xref: EMAPA:17352 xref: SCTID:361420009 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue [Term] id: UBERON:0010059 name: hypoglossal cord xref: EHDAA2:0004610 is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue [Term] id: UBERON:0010060 name: pharyngeal opening of pharyngotympanic tube def: "On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "ostium pharyngeum tubae auditivae" EXACT OMO:0003011 [FMA:TA] synonym: "ostium pharyngeum tubae auditivae" RELATED OMO:0003011 [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "ostium pharyngeum tubae auditoriae" EXACT OMO:0003011 [FMA:TA] synonym: "pharyngeal opening of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal opening of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of pharyngotympanic tube" EXACT [FMA:54979] synonym: "pharyngeal ostium" RELATED [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "pharyngeal ostium of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal ostium of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal ostium of pharyngotympanic tube" EXACT [FMA:54979] synonym: "pharyngeal tubal ostium" EXACT [FMA:54979] xref: FMA:54979 xref: SCTID:368945008 xref: Wikipedia:Pharyngeal_opening_of_auditory_tube is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray1029.png" xsd:anyURI [Term] id: UBERON:0010061 name: lumen of nasopharynx synonym: "nasopharyngeal luman" EXACT [] synonym: "nasopharynx cavity" EXACT [] synonym: "nasopharynx lumen" EXACT [FMA:55094] xref: FMA:55094 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001731 ! cavity of pharynx [Term] id: UBERON:0010062 name: pharyngotympanic tube epithelium synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117] synonym: "eustachian tube epithelium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0004117 xref: EMAPA:32801 xref: FMA:285217 xref: MA:0003142 is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015813 ! middle ear epithelium relationship: part_of UBERON:0002393 {source="cjm"} ! pharyngotympanic tube [Term] id: UBERON:0010063 name: tympanic cavity epithelium xref: EHDAA2:0004116 is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac is_a: UBERON:0015813 ! middle ear epithelium [Term] id: UBERON:0010064 name: open anatomical space def: "An anatomical space with at least one opening to another space or the exterior." [AEO:0000221] xref: AEO:0000221 xref: EHDAA2:0004616 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0010065 name: auditory meatus epithelium xref: EHDAA2:0004114 is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0015814 ! outer ear epithelium relationship: develops_from UBERON:0005872 {source="EHDAA2", source="PMID:16313389"} ! 1st arch pharyngeal cleft [Term] id: UBERON:0010066 name: tympanic plate def: "The tympanic part of the temporal bone is a curved plate of bone lying below the squama and in front of the mastoid process." [Wikipedia:Tympanic_part_of_the_temporal_bone] synonym: "ectotympanic" RELATED [Wikipedia:Ectotympanic] synonym: "ectotympanic bone" RELATED [Wikipedia:Ectotympanic] synonym: "pars tympanica" RELATED [Wikipedia:Tympanic_part_of_the_temporal_bone] synonym: "pars tympanica (os temporale)" EXACT [FMA:52880] synonym: "pars tympanica ossis temporalis" RELATED OMO:0003011 [Wikipedia:Tympanic_part_of_the_temporal_bone] synonym: "tympanic bone" RELATED [Wikipedia:Tympanic_part_of_the_temporal_bone] synonym: "tympanic part" RELATED [Wikipedia:Tympanic_part_of_the_temporal_bone] synonym: "tympanic part of temporal bone" EXACT [FMA:52880] xref: FMA:52880 xref: SCTID:138773005 xref: Wikipedia:Tympanic_part_of_the_temporal_bone is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ relationship: develops_from UBERON:0002218 ! tympanic ring relationship: part_of UBERON:0001678 ! temporal bone property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png" xsd:anyURI property_value: editor_note "consider merging with tympanic ring. See discussion page on wikipedia page for ectotympanic" xsd:string property_value: editor_note "TODO distinguish ecto- and ento- tympanics" xsd:string [Term] id: UBERON:0010069 name: outer epithelial layer of tympanic membrane def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane." [https://orcid.org/0000-0002-6601-2165, PMID:11237469] synonym: "cuticular layer of tympanic membrane" EXACT [FMA:56819] synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819] synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819] synonym: "outer layer of tympanic membrane" EXACT [] synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165] xref: FMA:56819 xref: SCTID:39725007 is_a: UBERON:0009647 ! tympanic membrane epithelium is_a: UBERON:0015814 ! outer ear epithelium relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0010070 name: intermediate layer of tympanic membrane def: "The intermediate fibrous layer of the tympanic membrane." [https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376, PMID:11237469] synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830] synonym: "intermediate fibrous layer of tympanic membrane" EXACT [FMA:56830] synonym: "tympanic endothelium" EXACT [MA:0001223] xref: EMAPA:19063 xref: FMA:56830 xref: MA:0001223 xref: SCTID:44692008 is_a: UBERON:0010071 {source="FMA"} ! layer of tympanic membrane property_value: external_ontology_notes "check MA" xsd:string {external_ontology="MA"} [Term] id: UBERON:0010071 name: layer of tympanic membrane subset: grouping_class synonym: "tympanic membrane layer" EXACT [FMA:56732] xref: FMA:56732 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002364 ! tympanic membrane property_value: taxon_notes "In mammals, this class groups together the two epithelial layers plus the intermediate fibrous layer" xsd:string [Term] id: UBERON:0010074 name: chromaffin system def: "Organ system subdivision that consists primarily of chromaffin cells and their supporting structures." [http://orcid.org/0000-0002-6601-2165] synonym: "argentaffin system" RELATED [MESH:A06.224] synonym: "chromaffin tissue" RELATED [] xref: FMA:79645 xref: MESH:D002838 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0000949 {source="cjm"} ! endocrine system property_value: taxon_notes "in adult cylostomes and teleosts, the interrenal bodies are separate from chromaffin bodies" xsd:string [Term] id: UBERON:0010075 name: sacral neural crest def: "One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia." [http://www.ncbi.nlm.nih.gov/books/NBK10065/, XB:curator] xref: XAO:0004192 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0010076 name: network of trabecular spaces in bone tissue def: "Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone." [FMA:259332] synonym: "trabecular network of bone tissue" EXACT [FMA:259332] synonym: "trabecular space network" RELATED [FMA:259332] xref: FMA:259332 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0008867 ! trabecular network of bone [Term] id: UBERON:0010077 name: cuboidal epithelium def: "An epithelium consisting of cuboidal epithelial cells." [Wikipedia:Cuboidal_epithelium] xref: NCIT:C32415 xref: UMLS:C0682577 {source="ncithesaurus:Cuboidal_Epithelium"} xref: Wikipedia:Cuboidal_epithelium is_a: UBERON:0000483 ! epithelium property_value: editor_note "TODO - coordinate with CL, add cuboidal cell" xsd:string property_value: external_ontology_notes "in NCIT this is glandular" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0010078 name: optic choroid vascular plexus synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] synonym: "choroid vasculature" RELATED [ZFA:0005094] synonym: "choroidal vascular plexus" RELATED [TAO:0005094] synonym: "CVP" EXACT OMO:0003000 [ZFA:0005094] synonym: "optic choroid vascular plexus" RELATED [XAO:0004176] xref: TAO:0005094 xref: XAO:0004176 xref: ZFA:0005094 is_a: UBERON:0002203 {source="ZFA"} ! vasculature of eye is_a: UBERON:0005629 {source="XAO"} ! vascular plexus relationship: part_of UBERON:0001776 {source="ZFA"} ! optic choroid property_value: editor_note "Consider merging with capillary layer. Consider choriocapillaris complex" xsd:string property_value: external_definition "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruchs's membrane.[XAO:0004176]." xsd:string {source="XAO:0004176"} property_value: external_definition "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string {source="ZFA:0005094"} property_value: taxon_notes "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string {source="PMID:14738502"} [Term] id: UBERON:0010081 name: future common hepatic duct def: "An extrahepatic bile duct that has the potential to develop into a common hepatic duct." [OBOL:automatic] xref: EHDAA2:0000595 is_a: UBERON:0003703 ! extrahepatic bile duct is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0034932 ! epithelium of biliary system relationship: develops_from UBERON:0005604 ! extrahepatic part of hepatic duct [Term] id: UBERON:0010083 name: future dermis def: "Mesenchyme that has the potential to develop into a dermis." [OBOL:automatic] xref: EHDAA2:0000598 is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0003089 {source="EHDAA2"} ! sclerotome relationship: develops_from UBERON:0004016 {source="XAO"} ! dermatome relationship: part_of UBERON:0002199 {source="EHDAA2"} ! integument property_value: editor_note "check development" xsd:string [Term] id: UBERON:0010084 name: future diaphragm def: "A structure that will develop into a diaphragm." [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0000599 is_a: UBERON:0006598 ! presumptive structure relationship: develops_from UBERON:0005594 {source="PMID:23586979"} ! head somite [Term] id: UBERON:0010090 name: future falx cerebri def: "A developing anatomical structure that has the potential to develop into a falx cerebri." [OBOL:automatic] xref: EHDAA2:0000608 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007524 ! dense mesenchyme tissue [Term] id: UBERON:0010091 name: future hindbrain meninx def: "A multi-tissue structure that has the potential to develop into a meninx of hindbrain." [OBOL:automatic] synonym: "future hindbrain meninges" EXACT [EHDAA2:0000610] xref: EHDAA2:0000610 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0007645 ! future meninx relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010092 name: future metencephalon def: "A developing anatomical structure that has the potential to develop into a metencephalon." [OBOL:automatic] xref: EHDAA2:0000623 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010096 name: future myelencephalon def: "A developing anatomical structure that has the potential to develop into a myelencephalon." [OBOL:automatic] xref: EHDAA2:0000640 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010123 name: future facial nucleus def: "A gray matter that has the potential to develop into a facial nucleus." [OBOL:automatic] xref: EHDAA2:0004639 is_a: UBERON:0002020 ! gray matter [Term] id: UBERON:0010124 name: future inferior salivatory nucleus def: "A gray matter that has the potential to develop into a inferior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004643 is_a: UBERON:0002020 ! gray matter property_value: editor_note "TODO - devfrom" xsd:string [Term] id: UBERON:0010125 name: future superior salivatory nucleus def: "A gray matter that has the potential to develop into a superior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004644 is_a: UBERON:0002020 ! gray matter [Term] id: UBERON:0010126 name: future nucleus ambiguus def: "A gray matter that has the potential to develop into a nucleus ambiguus." [OBOL:automatic] xref: EHDAA2:0004647 is_a: UBERON:0002020 ! gray matter [Term] id: UBERON:0010127 name: future dorsal motor nucleus of vagus def: "A gray matter that has the potential to develop into a dorsal motor nucleus of vagus nerve." [OBOL:automatic] xref: EHDAA2:0004650 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0010128 name: future pterygopalatine ganglion def: "A ganglion that has the potential to develop into a pterygopalatine ganglion." [OBOL:automatic] synonym: "future Meckel ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future Meckel's ganglion" EXACT [FMA:6965, OBOL:automatic] synonym: "future nasal ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future palatine ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future pterygopalatine ganglia" EXACT [MP:0008314, OBOL:automatic] synonym: "future sphenopalatine ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0000673, EHDAA2:0001889, OBOL:automatic] xref: EHDAA2:0000673 is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0001808 {source="EHDAA2"} ! parasympathetic ganglion [Term] id: UBERON:0010129 name: femur cartilage element def: "A femur endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015052 ! femur endochondral element relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation relationship: part_of UBERON:0005254 {source="EMAPA"} ! upper leg mesenchyme property_value: editor_note "TODO - request EHDAA2" xsd:string [Term] id: UBERON:0010130 name: embryonic autopod plate def: "The distal elements of the developing limb of vertebrates that will give rise to the autopod (e.g. manus, pes, paw)." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/1151, MP:0004576, UBERON:cjm] synonym: "autopod plate" EXACT [] synonym: "limb plate" EXACT [] is_a: UBERON:0006598 ! presumptive structure relationship: develops_from UBERON:0004347 ! limb bud [Term] id: UBERON:0010131 name: conducting tissue of heart def: "Any portion of cardiac muscle tissue that is part of the conducting system of heart or the Purkinje fibers." [http://orcid.org/0000-0002-6601-2165] synonym: "specialized conducting tissue of heart" EXACT [FMA:83378] synonym: "specialized muscle tissue of heart" EXACT [FMA:83378] xref: EHDAA2:0004528 xref: FMA:83378 is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0010132 name: gastroduodenal artery def: "A small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries)." [Wikipedia:Gastroduodenal_artery] subset: human_reference_atlas synonym: "arteria gastroduodenalis" RELATED OMO:0003011 [Wikipedia:Gastroduodenal_artery] xref: EHDAA2:0000310 xref: EHDAA:8574 xref: FMA:14775 xref: galen:GastroduodenalArtery xref: SCTID:244269002 xref: Wikipedia:Gastroduodenal_artery is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0005436 {source="EHDAA2"} ! common hepatic artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI [Term] id: UBERON:0010133 name: neuroendocrine gland def: "Any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli." [ISBN:0-683-40008-8, MP:0000631] subset: pheno_slim synonym: "neuroendocrine system gland" EXACT [] xref: MA:0000720 is_a: UBERON:0002368 ! endocrine gland relationship: part_of UBERON:8600018 ! neuroendocrine system [Term] id: UBERON:0010134 name: secretory circumventricular organ def: "A circumventricular organ that is capable of secreting substances into the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: EMAPA:35759 xref: MA:0002943 xref: neuronames:2857 is_a: UBERON:0005408 {source="MA"} ! circumventricular organ is_a: UBERON:0010133 {source="MA"} ! neuroendocrine gland [Term] id: UBERON:0010135 name: sensory circumventricular organ def: "A circumventricular organ that is capable of monitoring the levels of substances to the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "humerosensory circumventricular organ" RELATED [] synonym: "humerosensory system" RELATED OMO:0003004 [NeuroNames:2856] synonym: "humerosensory system organ" RELATED [] synonym: "sensitive circumventricular organs" RELATED OMO:0003004 [NeuroNames:2856] synonym: "sensitive organs" RELATED OMO:0003004 [NeuroNames:2856] synonym: "sensory circumventricular organs" RELATED [NeuroNames:2856] synonym: "sensory CVOs" RELATED OMO:0003004 [NeuroNames:2856] xref: EMAPA:37741 {source="MA:th"} xref: MA:0002944 xref: neuronames:2856 is_a: UBERON:0005408 ! circumventricular organ relationship: part_of UBERON:0001032 ! sensory system [Term] id: UBERON:0010136 name: epithelial sheet def: "An epithelial sheet is a flat surface consisting of closely packed epithelial cells." [GO:0002011] is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0010137 name: polarized epithelium def: "A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis." [GO:0001738] is_a: UBERON:0000483 ! epithelium property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Epithelial-configurations" xsd:anyURI [Term] id: UBERON:0010141 name: primitive sex cord of indifferent gonad def: "A sex cord that is part of a indifferent gonad." [OBOL:automatic] synonym: "indifferent sex cord" EXACT [] synonym: "primitive sex cords" EXACT [EHDAA2:0004051] xref: EHDAA2:0004051 is_a: UBERON:0004909 ! epithelium of gonad is_a: UBERON:0005295 ! sex cord relationship: develops_from UBERON:0005891 {source="EHDAA2"} ! coelomic epithelium relationship: part_of UBERON:0009117 ! indifferent gonad property_value: curator_notes "note that this represents the indifferent structure." xsd:string [Term] id: UBERON:0010143 name: seminal vesicle fluid def: "A bodily secretion that is produced by a seminal vesicle." [http://orcid.org/0000-0002-6601-2165] synonym: "secretion of seminal vesicle" EXACT [FMA:62969] synonym: "seminal fluid" RELATED INCONSISTENT [] synonym: "seminal vesicle secretion" EXACT [FMA:62969] synonym: "vesicular fluid" BROAD [] xref: BTO:0002053 xref: FMA:62969 xref: MA:0002526 xref: NCIT:C33529 xref: NCIT:C52552 xref: UMLS:C0036614 {source="ncithesaurus:Seminal_Fluid"} xref: UMLS:C0227987 {source="ncithesaurus:Seminal_Vesicle_Secretion"} is_a: UBERON:0006530 {source="FMA"} ! seminal fluid property_value: external_ontology_notes "in ncit, seminal fluid is a subtype of seminal vesicle secretion" xsd:string {external_ontology="ncit"} property_value: function_notes "important for semen coagulation, sperm motility, and stability of sperm chromatin and suppression of the immune activity in the female reproductive tract[MP]" xsd:string property_value: taxon_notes "constitutes 60-70 % of the ejaculate in humans[MP]" xsd:string [Term] id: UBERON:0010145 name: paraurethral gland def: "The numerous mucous-secreting glands found in several female mammalian species (including rodents and humans) on the anterior wall of the vagina, around the lower end of the urethra, and possessing a common paraurethral duct which opens (on each side) near the external urethral orifice; they are homologous with the prostate gland in males, have highly variable anatomy, and are believed to be the source of the female ejaculate, a lubricating fluid with a similar consistency to male prostatic fluid that is expelled through the urethra during sexual stimulation; like the male prostate, these glands are susceptible to infection (skenitis), cyst development, and cancer." [MGI:anna, MP:0011793] subset: pheno_slim synonym: "female prostate" EXACT [MP:0011793, PMID:10668204, Wikipedia:Skene%27s_gland] synonym: "female urethral gland" BROAD [EMAPA:29653, MP:0011793] synonym: "female urethral gland" RELATED INCONSISTENT [] synonym: "glandula vestibulares minor" RELATED OMO:0003011 [MP:0011793] synonym: "glandulae vestibulares minores" RELATED OMO:0003011 [Wikipedia:Skene%27s_gland] synonym: "Guerin's gland" RELATED [MP:0011793] synonym: "para-urethral gland" EXACT [FMA:20083, MP:0011793] synonym: "periurethral gland" EXACT [Wikipedia:Skene%27s_gland] synonym: "Schueller's gland" RELATED [MP:0011793] synonym: "Skene gland" EXACT [MP:0011793] synonym: "Skene's gland" EXACT [FMA:20083, MP:0011793] synonym: "Skene's gland of clitoral urethra" RELATED [EMAPA:36133] synonym: "U-spot" RELATED [MP:0011793, Wikipedia:Skene%27s_gland] synonym: "urethral gland of clitoral urethra" EXACT [EMAPA:36134] xref: EMAPA:36133 xref: EMAPA:36134 xref: FMA:20083 xref: NCIT:C12339 xref: SCTID:264125007 xref: UMLS:C0221315 {source="ncithesaurus:Paraurethral_Gland"} xref: Wikipedia:Skene%27s_gland is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0000997 {source="FMA"} ! mammalian vulva property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg" xsd:anyURI property_value: external_ontology_notes "in MP female urethral gland, Skene gland and paraurethral gland are exact syns. Note that NCITA seems to use the term in a more generic way, as a parent for skene gland, cowper gland (which may be the same as the male bulbo-urethral gland)" xsd:string {external_ontology="MP"} [Term] id: UBERON:0010146 name: paraurethral duct alt_id: UBERON:0035064 def: "The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening." [Wikipedia:Skene%27s_ducts] synonym: "duct of paraurethral gland" EXACT [FMA:21860] synonym: "duct of Skene's gland" EXACT [FMA:21860] synonym: "ductus paraurethrales urethrae femininae" RELATED OMO:0003011 [Wikipedia:Skene%27s_ducts] synonym: "female prostate duct" EXACT [PMID:10668204] synonym: "paraurethral gland duct" EXACT [FMA:21860] synonym: "periurethral duct" EXACT [] synonym: "Skene's duct" EXACT [FMA:21445] xref: FMA:21445 xref: FMA:21860 xref: SCTID:279480006 xref: Wikipedia:Skene%27s_ducts is_a: UBERON:0000058 ! duct is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0010145 ! paraurethral gland property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg" xsd:anyURI property_value: external_ontology_notes "FMA has two classes that may be equivalent here" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010147 name: male accessory sex gland def: "Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male." [BTO:0004798] subset: human_reference_atlas subset: pheno_slim synonym: "male accessory gland" RELATED [BTO:0004798] synonym: "male accessory reproductive gland" RELATED [] xref: BTO:0004798 is_a: UBERON:0005399 {source="BTO"} ! male reproductive gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010148 name: mating plug def: "A gelatinous secretion used in the mating of some species. It is deposited by a male into a female genital tract and later hardens into a plug or glues the tract together." [Wikipedia:Mating_plug] synonym: "copulation plug" EXACT [Wikipedia:Mating_plug] synonym: "copulatory plug" EXACT [SPD:0000547] synonym: "sement" RELATED [Wikipedia:Mating_plug] synonym: "sperm plug" EXACT [Wikipedia:Mating_plug] synonym: "sphragis" RELATED [Wikipedia:Mating_plug] synonym: "vaginal plug" EXACT [Wikipedia:Mating_plug] xref: SPD:0000547 xref: Wikipedia:Mating_plug is_a: UBERON:0035784 ! seminal clot relationship: present_in_taxon NCBITaxon:10088 relationship: present_in_taxon NCBITaxon:6656 relationship: present_in_taxon NCBITaxon:9397 relationship: present_in_taxon NCBITaxon:9443 [Term] id: UBERON:0010150 name: duct of major vestibular gland def: "One of a pair of ducts leading from the Bartholin's glands to the surface of the vulva." [Wikipedia:Bartholin's_duct] synonym: "Bartholin's duct" RELATED INCONSISTENT [Wikipedia:Bartholin's_duct] synonym: "duct of greater vestibular gland" EXACT [FMA:20088] synonym: "greater vestibular gland duct" EXACT [FMA:20088] xref: FMA:20088 xref: Wikipedia:Bartholin's_duct is_a: UBERON:0011831 ! duct of vestibular gland relationship: part_of UBERON:0000460 ! major vestibular gland [Term] id: UBERON:0010151 name: duct of bulbourethral gland def: "A duct that is part of a bulbo-urethral gland." [OBOL:automatic] synonym: "bulbourethral gland duct" EXACT [FMA:20091] synonym: "duct of bulbo-urethral gland" EXACT [FMA:20091] synonym: "ductus glandulae bulbourethralis" EXACT OMO:0003011 [FMA:TA] xref: FMA:20091 xref: SCTID:279709005 is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0002366 ! bulbo-urethral gland [Term] id: UBERON:0010152 name: skin mucus def: "A mucous secretion that is produced by glands in the epidermis." [http://orcid.org/0000-0002-6601-2165] synonym: "epidermal mucus" RELATED [BTO:0005082] synonym: "skin mucous" RELATED [] is_a: UBERON:0000912 ! mucus [Term] id: UBERON:0010153 name: rumen papilla synonym: "rumen papillae" EXACT OMO:0003004 [] xref: SCTID:43386000 is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0008285 ! rumen epithelium [Term] id: UBERON:0010154 name: inner lining mucosa of the abomasum def: "The inner mucosa of the fourth stomach chamber of a ruminant produces rennet." [Wikipedia:Rennet] synonym: "muscoa of abomasum" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "muscoa of fourth stomach" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "rennet" RELATED [BTO:0001168] xref: BTO:0001168 xref: Wikipedia:Rennet is_a: UBERON:0006931 ! stomach glandular region mucosa relationship: part_of UBERON:0007358 {source="BTO"} ! abomasum [Term] id: UBERON:0010155 name: parietomastoid suture def: "Unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP:Squamosal_suture]." [http://orcid.org/0000-0002-6601-2165] synonym: "parieto-mastoid suture of skull" EXACT [] synonym: "parietomastoid suture of skull" EXACT [FMA:52947] xref: FMA:52947 xref: SCTID:136753005 is_a: UBERON:0003685 {source="FMA"} ! cranial suture [Term] id: UBERON:0010156 name: sphenofrontal suture def: "The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone." [Wikipedia:Sphenofrontal_suture] synonym: "frontosphenoid suture" EXACT [FMA:52938] synonym: "spheno-frontal suture" RELATED [] synonym: "sphenofrontal" RELATED [Wikipedia:Sphenofrontal_suture] synonym: "sphenofrontal suture of skull" EXACT [FMA:52938] synonym: "sutura sphenofrontalis" RELATED OMO:0003011 [Wikipedia:Sphenofrontal_suture] xref: FMA:52938 xref: SCTID:136349005 xref: Wikipedia:Sphenofrontal_suture is_a: UBERON:0003685 ! cranial suture property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png" xsd:anyURI [Term] id: UBERON:0010157 name: sphenoparietal suture def: "The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone." [Wikipedia:Sphenoparietal_suture] synonym: "spheno-parietal suture" EXACT [] synonym: "sphenoparietal suture of skull" EXACT [FMA:52945] synonym: "sutura sphenoparietalis" RELATED OMO:0003011 [Wikipedia:Sphenoparietal_suture] xref: FMA:52945 xref: SCTID:136551005 xref: Wikipedia:Sphenoparietal_suture is_a: UBERON:0003685 ! cranial suture property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png" xsd:anyURI [Term] id: UBERON:0010158 name: sphenozygomatic suture def: "The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone." [Wikipedia:Sphenozygomatic_suture] synonym: "sphenozygomatica suture of skull" EXACT [FMA:52956] synonym: "sutura sphenozygomatica" RELATED OMO:0003011 [Wikipedia:Sphenozygomatic_suture] xref: FMA:52956 xref: SCTID:368980007 xref: Wikipedia:Sphenozygomatic_suture is_a: UBERON:0003685 ! cranial suture property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png" xsd:anyURI [Term] id: UBERON:0010159 name: occipitomastoid suture def: "The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture." [Wikipedia:Occipitomastoid_suture] synonym: "occipito-mastoid suture" RELATED [Wikipedia:Occipitomastoid_suture] synonym: "occipitomastoid suture of skull" EXACT [FMA:52934] synonym: "sutura occipitomastoidea" RELATED OMO:0003011 [Wikipedia:Occipitomastoid_suture] xref: FMA:52934 xref: SCTID:134136005 xref: Wikipedia:Occipitomastoid_suture is_a: UBERON:0003685 {source="FMA"} ! cranial suture property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Occipitomastoideus.PNG" xsd:anyURI [Term] id: UBERON:0010160 name: lumen of lymphatic vessel def: "An anatomical cavity that surrounded_by a lymphatic vessel." [OBOL:automatic] synonym: "lumen of lymphatic duct" EXACT [FMA:59681] synonym: "lymphatic vessel lumen" EXACT [FMA:59681] xref: FMA:59681 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0010161 name: lumen of blood vessel def: "An anatomical cavity that surrounded_by a blood vessel." [OBOL:automatic] synonym: "blood vessel lumen" EXACT [] xref: FMA:312610 xref: SCTID:91747007 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0010162 name: post-anal tail tip def: "The distal end of the tail." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "end of tail" RELATED [MA:0002848] synonym: "tail tip" EXACT [MA:0002848] xref: EMAPA:37760 {source="MA:th"} xref: MA:0002848 xref: XAO:0004057 is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: part_of UBERON:0007812 {source="MA"} ! post-anal tail [Term] id: UBERON:0010163 name: eyebrow def: "The eyebrow is an area of thick, delicate hairs above the eye that follows the shape of the lower margin of the brow ridges. Their main function is to protect the eye, but they are also important to human communication and facial expression. It is not uncommon for people to modify their eyebrows by means of hair addition or removal, make up, or piercings." [Wikipedia:Eyebrow] subset: pheno_slim subset: phenotype_rcn synonym: "supercilium" RELATED OMO:0003011 [Wikipedia:Eyebrow] xref: FMA:54237 xref: MESH:D005138 xref: NCIT:C32575 xref: SCTID:265781000 xref: UMLS:C0015420 {source="ncithesaurus:Eyebrow"} xref: Wikipedia:Eyebrow is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face relationship: part_of UBERON:0035639 ! ocular adnexa property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/29/Eyes_chris.jpg" xsd:anyURI property_value: external_ontology_notes "in NCIT, this is an 'eye appendage'" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0010164 name: collection of hairs def: "An anatomical cluster that composed_primarily_of a strand of hair." [OBOL:automatic] synonym: "hairs" EXACT [FMA:70752] synonym: "hairs set" EXACT [FMA:70752] synonym: "pili" EXACT OMO:0003011 [FMA:TA] synonym: "set of hairs" EXACT [FMA:70752] xref: FMA:70752 is_a: UBERON:0034925 ! anatomical collection [Term] id: UBERON:0010165 name: collection of hair on face def: "A collection of hairs that is part of a face." [OBOL:automatic] subset: phenotype_rcn synonym: "facial hair" RELATED [] synonym: "facial hairs set" EXACT [FMA:70741] synonym: "set of facial hairs" EXACT [FMA:70741] xref: FMA:70741 is_a: UBERON:0014382 ! collection of hairs on head or neck relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0010166 name: coat of hair subset: pheno_slim subset: phenotype_rcn synonym: "coat" BROAD [] synonym: "coat pelt" RELATED [] synonym: "fleece" BROAD [] synonym: "fur coat" NARROW [] synonym: "hair coat" EXACT [] synonym: "lanugo" NARROW [] synonym: "mane" NARROW [] synonym: "pelage" RELATED [] synonym: "pelt" RELATED [] synonym: "set of coat hairs" EXACT [] synonym: "velli" NARROW [] synonym: "wool coat" NARROW [] synonym: "wooly coat" NARROW [] xref: NCIT:C88212 xref: Wikipedia:Coat_(animal) is_a: UBERON:0010164 ! collection of hairs [Term] id: UBERON:0010167 name: beard def: "The collection of hair that grows on the chin, cheeks and neck of human beings. Usually, only pubescent or adult males are able to grow beards. However, women with hirsutism may develop a beard. When differentiating between upper and lower facial hair, a beard specifically includes the moustache, which refers to hair above the upper lip and around it." [Wikipedia:Beard] subset: phenotype_rcn xref: FMA:54240 xref: SCTID:256924005 xref: Wikipedia:Beard is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face [Term] id: UBERON:0010168 name: collection of eyelashes def: "A collection of hair on face that is part of a eyelash." [OBOL:automatic] synonym: "cilia" EXACT OMO:0003011 [FMA:TA] synonym: "eyelashes" EXACT [FMA:70742] synonym: "eyelashes set" EXACT [FMA:70742] synonym: "set of eyelashes" EXACT [FMA:70742] xref: FMA:70742 xref: SCTID:367575006 is_a: UBERON:0010165 ! collection of hair on face [Term] id: UBERON:0010169 name: moustache def: "Facial hair grown on the outer surface of the upper lip. It may or may not be accompanied by a type of beard, a facial hair style grown and cropped to cover most of the lower half of the face." [Wikipedia:Moustache] subset: phenotype_rcn synonym: "mustache" EXACT [] synonym: "set of hair of upper lip proper" RELATED [FMA:59652] xref: FMA:59652 xref: SCTID:256925006 xref: Wikipedia:Moustache is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0010170 name: region of neural crest is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002342 ! neural crest property_value: external_definition "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000045", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0010171 name: strand of hair of face def: "A strand of hair that is part of a face." [OBOL:automatic] subset: pheno_slim synonym: "face hair" EXACT [FMA:54360] synonym: "face hair strand" EXACT [] synonym: "facial hair" RELATED [FMA:54360] synonym: "hair of face" EXACT [FMA:54360] xref: FMA:54360 xref: SCTID:368910000 is_a: UBERON:0016446 ! hair of head relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0010172 name: bulb of aorta def: "The portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles." [MP:0011572] subset: pheno_slim synonym: "aorta bulb" EXACT [MP:0011575] synonym: "aortic bulb" EXACT [FMA:3740] synonym: "aortic root" EXACT [MP:0011572] synonym: "bulb of ascending aorta" EXACT [FMA:3740] synonym: "bulbus aortae" EXACT OMO:0003011 [FMA:TA] synonym: "root of aorta" EXACT [FMA:3740] synonym: "supraaortic valve area" EXACT [FMA:3740] xref: BTO:0004695 xref: FMA:3740 xref: SCTID:362032000 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001496 {source="FMA"} ! ascending aorta property_value: external_definition "The dilated first part of the aorta containing the aortic semilunar valves and the aortic sinuses." xsd:string {source="http://medical-dictionary.thefreedictionary.com/aortic+bulb"} [Term] id: UBERON:0010173 name: sinotubular junction def: "The point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure." [MP:0011572] subset: pheno_slim synonym: "sinotubular ridge" EXACT [MP:0011572] xref: EMAPA:37951 {source="MA:th"} is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001496 {source="MP"} ! ascending aorta [Term] id: UBERON:0010174 name: Schweigger-Seidel sheath def: "A phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen." [PMCID:PMC3204613, Wikipedia:Schweigger-Seidel_sheath] xref: Wikipedia:Schweigger-Seidel_sheath is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001980 ! arteriole relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0010175 name: nutrient foramen vein def: "A vein or veins draining a bone and emerging from a nutrient foramen." [http://www.medilexicon.com/medicaldictionary.php?t=97392] synonym: "nutrient vein" EXACT [FMA:50780] synonym: "vena nutricia" RELATED OMO:0003011 [] xref: FMA:50780 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0010176 name: nutrient foramen artery def: "The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals." [Wikipedia:Nutrient_artery] synonym: "a. nutricia" RELATED OMO:0003011 [Wikipedia:Nutrient_artery] synonym: "a. nutriens" RELATED OMO:0003011 [Wikipedia:Nutrient_artery] synonym: "aretria nutricia" RELATED OMO:0003011 [] synonym: "nutrient artery" EXACT [FMA:50779] xref: FMA:50779 xref: NCIT:C33189 xref: SCTID:337318006 xref: UMLS:C0278431 {source="ncithesaurus:Nutrient_Artery"} xref: Wikipedia:Nutrient_artery is_a: UBERON:0004573 {source="FMA"} ! systemic artery [Term] id: UBERON:0010181 name: straight venules of kidney def: "The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries." [Wikipedia:Straight_venules_of_kidney] subset: human_reference_atlas synonym: "set of straight venules of kidney" EXACT [FMA:72007] synonym: "venae rectae" RELATED [Wikipedia:Straight_venules_of_kidney] synonym: "venulae rectae" RELATED [Wikipedia:Straight_venules_of_kidney] synonym: "venulae rectae of kidney" EXACT [FMA:72007] synonym: "venulae rectae renis" EXACT OMO:0003011 [FMA:TA] synonym: "venulae rectae renis" RELATED OMO:0003011 [Wikipedia:Straight_venules_of_kidney] synonym: "venulae recti" RELATED [Wikipedia:Straight_venules_of_kidney] xref: FMA:72007 xref: SCTID:245983001 xref: Wikipedia:Straight_venules_of_kidney is_a: UBERON:0005629 ! vascular plexus is_a: UBERON:0006544 ! kidney vasculature relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010183 name: liver trabecula def: "A trabecula that is part of a liver." [GO:0060344, OBOL:automatic] synonym: "hepatic trabecula" RELATED [] synonym: "liver trabeculae" EXACT OMO:0003004 [] is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0010185 name: rete ovarii def: "A structure formed from the primary sex cords in females, counterpart of the rete testis in males." [Wikipedia:Rete_ovarii] subset: pheno_slim synonym: "rete ovarii of ovary" EXACT [MA:0003237] xref: EMAPA:17966 xref: MA:0003237 xref: NCIT:C61561 xref: SCTID:259261007 xref: UMLS:C0227880 {source="ncithesaurus:Rete_Ovarii"} xref: Wikipedia:Rete_ovarii is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: develops_from UBERON:0005296 ! ovary sex cord relationship: part_of UBERON:0000992 ! ovary property_value: editor_note "todo" xsd:string [Term] id: UBERON:0010186 name: male urethral gland def: "Any of the numerous small mucous-secreting glands located in the wall of the penile urethra." [MGI:anna, MP:0011794] subset: pheno_slim synonym: "gland of Littre" EXACT [] synonym: "gland of male urethra" EXACT [] synonym: "glandulae urethrales urethrae masculinae" RELATED OMO:0003011 [Wikipedia:Urethral_gland] synonym: "Littre's gland" EXACT [FMA:21443] synonym: "male urethra gland" EXACT [] synonym: "urethral gland (male)" EXACT [FMA:21443] xref: EMAPA:29645 xref: FMA:21443 xref: NCIT:C49311 xref: SCTID:303562001 xref: UMLS:C1314737 {source="ncithesaurus:Urethral_Gland"} xref: Wikipedia:Urethral_gland is_a: UBERON:0001338 ! urethral gland relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0010187 name: female urethral gland def: "An urethral gland that is part of a female urethra." [OBOL:automatic] synonym: "female urethra gland" EXACT [] synonym: "gland of female urethra" EXACT [] synonym: "urethral gland (female)" EXACT [FMA:21444] xref: EMAPA:29653 xref: FMA:21444 xref: SCTID:279476001 is_a: UBERON:0001338 ! urethral gland relationship: part_of UBERON:0001334 ! female urethra [Term] id: UBERON:0010188 name: protuberance def: "A roughly circular bulge in a surface." [EHDAA2:0003250] xref: AEO:0000205 xref: EHDAA2:0003250 xref: FMA:82506 is_a: UBERON:0034944 {source="FMA"} ! zone of organ property_value: editor_note "requires review" xsd:string [Term] id: UBERON:0010189 name: right atrium venous valve synonym: "right venous valve" RELATED [EHDAA2:0001762] xref: EHDAA2:0001762 xref: EMAPA:17010 xref: EMAPA:17328 xref: MA:0001872 is_a: UBERON:0005208 ! right atrium valve is_a: UBERON:0006675 ! venous valve property_value: external_ontology_notes "part_of in EHDAA2. Only child in MA." xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0010190 name: pair of dorsal aortae def: "The paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation." [ISBN:0-914294-08-3, MP:0004787] subset: pheno_slim synonym: "paired dorsal aortae" EXACT [EHDAA2:0000410] xref: EHDAA2:0000410 xref: EMAPA:18606 xref: MA:0000476 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system [Term] id: UBERON:0010191 name: aortic system xref: EHDAA2:0004512 is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0004571 {source="Wikipedia"} ! systemic arterial system [Term] id: UBERON:0010192 name: genital artery def: "One of the laterally paired arteries that supply the gonads." [ISBN:0073040584, Wikipedia:Gonadal_artery] synonym: "gonadal artery" EXACT [] xref: Wikipedia:Gonadal_artery is_a: UBERON:0012254 ! abdominal aorta artery [Term] id: UBERON:0010193 name: renal portal vein def: "A portal vein that empties into capillaries within the kidneys." [ISBN:0073040584] synonym: "renal portal veins" EXACT OMO:0003004 [ZFA:0000577] xref: TAO:0000577 xref: ZFA:0000577 is_a: UBERON:0001638 {source="ZFA"} ! vein is_a: UBERON:0003513 ! trunk blood vessel relationship: part_of UBERON:0002201 {source="ZFA"} ! vasculature of trunk property_value: function_notes "function not well understood." xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0010194 name: hepatic portal system def: "A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver." [ISBN:0073040584] synonym: "hepatic-portal system" EXACT [AAO:0010225] synonym: "portal system of liver" EXACT [] xref: AAO:0010225 is_a: UBERON:0005806 ! portal system property_value: external_definition "Part of the circulatory system which includes the ventral abdominal vein, pelvic veins, and portal vein and collects blood from the pelvic region, liver, gall bladder and stomach.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010225", ontology="AAO", source="AAO:BJB"} [Term] id: UBERON:0010195 name: renal portal system def: "A portal system that transports blood returning from capillary beds within tail or hindlimbs through paired renal portal veins that empty into capillaries within the kidneys." [ISBN:0073040584] synonym: "portal system of kidney" EXACT [] synonym: "renal-portal system" EXACT [AAO:0010518] xref: AAO:0010518 is_a: UBERON:0005806 ! portal system relationship: never_in_taxon NCBITaxon:40674 {source="ISBN:0073040584"} property_value: external_definition "Part of the circulatory system in which the veins of the hindlimb combine to form the pair Jacobson's veins which receive many small vesicles from the kidney and also collects blood from the oviducal vein.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010518", ontology="AAO", source="AAO:BJB"} property_value: function_notes "function not well understood" xsd:string property_value: taxon_notes "present in all classes of vertebrates except mammals; the mammalian kidney has a low pressure vascular network that may be its counterpart" xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0010197 name: trunk of common carotid artery def: "The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery." [https://orcid.org/0000-0002-6601-2165] synonym: "common carotid arterial trunk" EXACT [FMA:69323] synonym: "common carotid artery" RELATED INCONSISTENT [EHDAA2:0000306] xref: EHDAA2:0000306 xref: FMA:69323 is_a: UBERON:0005396 ! carotid artery segment relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches [Term] id: UBERON:0010198 name: carotid duct def: "A segment of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it regresses early in development to allow the carotid axis to take its definitive appearance." [http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus, MP:MP] subset: pheno_slim synonym: "ductus caroticus" EXACT [EMAPA:17006] xref: EMAPA:17006 xref: SCTID:340062006 is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0005805 ! dorsal aorta property_value: taxon_notes "In amphibians, closes at metamorphosis" xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0010199 name: bona-fide anatomical boundary def: "An anatomical boundary that corresponds to some physical discontinuity." [CARO:0001004] comment: One might argue that all boundaries are actually fiat in the sense that there must be some fiat element at a fine enough scale of granularity. This ontology choses to ignore this issue as below the level of granularity relevant to anatomy. (DOS121102) subset: upper_level xref: CARO:0001004 is_a: UBERON:0000466 {source="CARO"} ! immaterial anatomical entity [Term] id: UBERON:0010202 name: lateral line def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [Wikipedia:Lateral_line, ZFA:0001469] synonym: "lateral lines" EXACT OMO:0003004 [ZFA:0001469] xref: AAO:0011128 xref: TAO:0001469 xref: Wikipedia:Lateral_line xref: XAO:0004002 xref: ZFA:0001469 is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0009128 ! lateral line placode relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system [Term] id: UBERON:0010204 name: tail vasculature def: "A vasculature that is part of a post-anal tail." [OBOL:automatic] synonym: "post-vent vasculature" EXACT [ZFA:0005037] synonym: "tail vasculature" RELATED [ZFA:0005037] xref: TAO:0005037 xref: XAO:0004151 xref: ZFA:0005037 is_a: UBERON:0002049 ! vasculature relationship: part_of UBERON:0007812 ! post-anal tail property_value: external_ontology_notes "isa blood vessel in XAO" xsd:string {external_ontology="XAO"} [Term] id: UBERON:0010205 name: mesencephalic vein def: "One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]." [http://www.medilexicon.com/medicaldictionary.php?t=97378, XAO:0004174] synonym: "msv" RELATED [TAO:0005092] synonym: "vena mesencephalica" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] synonym: "venae mesencephalicae" EXACT OMO:0003004 [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] xref: SCTID:43225002 xref: TAO:0005092 xref: XAO:0004174 xref: ZFA:0005092 is_a: UBERON:0001638 {source="XAO"} ! vein property_value: editor_note "review this term, check taxon scope; note FMA has specific subtypes" xsd:string [Term] id: UBERON:0010207 name: nictitating membrane def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [MESH:A13.660, Wikipedia:Nictitating_membrane] subset: pheno_slim synonym: "haw" RELATED [Wikipedia:Nictitating_membrane] synonym: "membrana nictitans" EXACT OMO:0003011 [Wikipedia:Nictitating_membrane] synonym: "nictitans" EXACT [http://tolweb.org/Amniota] synonym: "palperbra tertia" EXACT OMO:0003011 [PMID:7559104] synonym: "third eyelid" EXACT [MESH:A13.660] xref: MESH:D009541 xref: NCIT:C77657 xref: SCTID:113326005 xref: UMLS:C0028058 {source="ncithesaurus:Nictitating_Membrane"} xref: Wikipedia:File\:Chickenblinking.jpg xref: Wikipedia:Nictitating_membrane is_a: UBERON:0001711 ! eyelid relationship: never_in_taxon NCBITaxon:376913 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:8570 relationship: part_of UBERON:0001811 ! conjunctiva relationship: present_in_taxon NCBITaxon:261739 relationship: present_in_taxon NCBITaxon:8292 relationship: present_in_taxon NCBITaxon:8782 relationship: present_in_taxon NCBITaxon:9632 relationship: present_in_taxon NCBITaxon:9709 relationship: present_in_taxon NCBITaxon:9816 relationship: present_in_taxon NCBITaxon:9835 property_value: editor_note "We exclude the shark structure for this via a taxon constraint." xsd:string property_value: taxon_notes "in mice, the nictitating membrane is very small and composed of a very thin core of cartilage covered by loose connective tissue" xsd:string property_value: taxon_notes "In most primate species, a plica semilunaris is present, although fully developed nictitating membranes can be found in lemurs and lorisoid primates[Wikipedia:Nictitating_membrane]" xsd:string property_value: taxon_notes "Some reptiles, birds, and sharks have full nictitating membranes; in many mammals, a small, vestigial portion of the membrane remains in the corner of the eye. Some mammals, such as camels, polar bears, seals, and aardvarks, have full nictitating membranes. fully developed nictitating membranes can be found in lemurs and lorisoid primates." xsd:string {source="WP"} property_value: taxon_notes "The Calabar angwantibo (Arctocebus calabarensis, a lorisoid) is the only primate to have a functioning nictitating membrane[Wikipedia:Calabar_angwantibo]" xsd:string [Term] id: UBERON:0010209 name: plica semilunaris of conjunctiva def: "The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted." [Wikipedia:Plica_semilunaris_of_conjunctiva] synonym: "plica semilunaris (conjunctiva)" EXACT [FMA:59045] synonym: "plica semilunaris conjunctivae" RELATED OMO:0003011 [Wikipedia:Plica_semilunaris_of_conjunctiva] synonym: "plica semilunaris of the conjunctiva" RELATED [Wikipedia:Plica_semilunaris_of_conjunctiva] synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045] xref: FMA:59045 xref: SCTID:280686009 xref: Wikipedia:Plica_semilunaris_of_conjunctiva is_a: UBERON:0005160 {source="Wikipedia"} ! vestigial structure relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png" xsd:anyURI property_value: taxon_notes "It is the vestigial remnant of the nictitating membrane" xsd:string [Term] id: UBERON:0010210 name: blood clot def: "A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network." [BTO:0000102, Wikipedia:Thrombus] synonym: "clot" NARROW [] synonym: "coagulated blood" EXACT [] synonym: "fibrin clot" EXACT [] synonym: "hemostatic plug" EXACT [Wikipedia:Thrombus] synonym: "thrombus" EXACT [BTO:0000102] xref: BTO:0000102 xref: galen:BloodClot xref: Wikipedia:Thrombus is_a: UBERON:0000463 ! organism substance relationship: develops_from UBERON:0000178 {source="BTO"} ! blood [Term] id: UBERON:0010211 name: granulation tissue def: "Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes." [BTO:0003257] xref: BTO:0003257 xref: MESH:D006097 is_a: UBERON:0002384 {source="BTO"} ! connective tissue [Term] id: UBERON:0010212 name: laryngeal apparatus def: "Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring." [AAO:0000267] synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904] xref: AAO:0000267 xref: EHDAA2:0000904 is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx relationship: part_of UBERON:0008895 ! splanchnocranium property_value: editor_note "check this. See also https://github.com/obophenotype/uberon/wiki/The-axial-skeleton" xsd:string [Term] id: UBERON:0010213 name: laryngeal pre-cartilage condensation is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0010221 {source="EHDAA2-abstracted"} ! laryngeal associated mesenchyme relationship: part_of UBERON:0010212 {source="EHDAA2-abstracted"} ! laryngeal apparatus [Term] id: UBERON:0010214 name: cricoid pre-cartilage condensation xref: EHDAA2:0000327 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010215 name: arytenoid swellings def: "Paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed." [http://www.medilexicon.com/medicaldictionary.php?t=87317] xref: EHDAA2:0000146 is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation relationship: develops_from UBERON:0010221 {source="EHDAA2"} ! laryngeal associated mesenchyme relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus property_value: external_ontology_notes "EHDAA2 and EMAPA appear to be inconsistent" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0010219 name: thyroid pre-cartilage condensation xref: EHDAA2:0004088 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010220 name: arytenoid pre-cartilage condensation synonym: "arytenoid swelling pre-cartilage condensation" EXACT [EMAPA:17387] xref: EHDAA2:0000144 xref: EMAPA:17387 xref: VHOG:0000998 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation relationship: develops_from UBERON:0010215 {source="EHDAA2"} ! arytenoid swellings [Term] id: UBERON:0010221 name: laryngeal associated mesenchyme comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? xref: EHDAA2:0004085 is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx relationship: part_of UBERON:0008895 ! splanchnocranium [Term] id: UBERON:0010222 name: anatomical line between pupils subset: pheno_slim synonym: "inter-pupillary line" EXACT [] synonym: "interpupillary line" EXACT [] is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0010223 name: left pupil def: "A pupil that is part of a left eye." [OBOL:automatic] synonym: "pupil of left eye" EXACT [FMA:58254] xref: FMA:58254 xref: SCTID:368597006 is_a: UBERON:0001771 ! pupil relationship: part_of UBERON:0004548 ! left eye property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.3/assets/3d-vh-f-eye-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.3/assets/3d-vh-m-eye-l.glb" xsd:anyURI [Term] id: UBERON:0010224 name: right pupil def: "A pupil that is part of a right eye." [OBOL:automatic] synonym: "pupil of right eye" EXACT [FMA:58253] xref: FMA:58253 xref: SCTID:368575009 is_a: UBERON:0001771 ! pupil relationship: part_of UBERON:0004549 ! right eye property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.3/assets/3d-vh-f-eye-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.3/assets/3d-vh-m-eye-r.glb" xsd:anyURI [Term] id: UBERON:0010225 name: thalamic complex def: "A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]." [Wikipedia:Thalamus#Thalamic_nuclei] xref: EHDAA2:0004469 xref: FMA:258745 is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019269 ! gray matter of diencephalon [Term] id: UBERON:0010227 name: future cardiac atrium def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFA:0001718] synonym: "presumptive atrium heart tube" EXACT [ZFA:0001718] synonym: "primordial atrium" EXACT [FMA:71005] synonym: "primordial cardiac atrium" EXACT [FMA:71005] xref: FMA:71005 xref: TAO:0002228 xref: ZFA:0001718 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube [Term] id: UBERON:0010228 name: ruminal fluid def: "A portion of organism substance that is produced a rumen." [OBOL:automatic] xref: BTO:0004789 is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0007365 ! rumen [Term] id: UBERON:0010229 name: ruminant esophageal groove def: "A muscular structure at the lower end of the esophagus that, when closed, forms a tube allowing milk to go directly into the abomasum. (This prevents milk from being fermented or soured by the ruminal microorganisms)." [http://www.extension.org/pages/16468/esophageal-groove] comment: The formation of the esophageal groove is controlled by neural stimulation from suckling and milk proteins. This means milk, colostrum, and milk replacer bypass the rumen, while water enters it. This is modelled as the structure itself, rather that the space of the groove, see https://github.com/obophenotype/uberon/pull/2691 for more information. synonym: "esophageal groove" BROAD SENSU [] synonym: "reticular groove" BROAD SENSU [] synonym: "ruminant reticular groove" EXACT [] xref: BTO:0004789 xref: SCTID:86149002 is_a: UBERON:0004111 ! anatomical conduit relationship: develops_from UBERON:0007361 ! ruminant reticulum [Term] id: UBERON:0010230 name: eyeball of camera-type eye def: "The core globe-shaped component of the camera-type eye." [UBERON:cjm] subset: pheno_slim synonym: "bulbus oculi" EXACT [] synonym: "eye" RELATED INCONSISTENT [] synonym: "eye globe" EXACT [VHOG:0001616] synonym: "eyeball" EXACT [FMA:12513] synonym: "globe" RELATED [HP:0100886, MIAA:0000283] xref: FMA:12513 xref: MIAA:0000283 xref: SCTID:244486005 xref: VHOG:0001616 xref: Wikipedia:Globe_(human_eye) is_a: UBERON:0000020 ! sense organ relationship: fma_set_term FMA:264089 relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye property_value: curator_notes "See notes for camera-type eye" xsd:string [Term] id: UBERON:0010231 name: anatomical line between outer ears synonym: "inter-otic line" RELATED [] synonym: "inter-pinna line" RELATED [] synonym: "otic line" RELATED [] is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0010232 name: placodal ectoderm xref: FMA:293966 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0010233 name: stroma of thyroid gland def: "The connective tissue that supports the lobules and follicles of the thyroid gland." [http://www.drugs.com/dict/stroma-of-thyroid-gland.html] synonym: "thyroid gland stroma" EXACT [FMA:86304] synonym: "thyroid stroma" EXACT [] xref: FMA:86304 xref: SCTID:157862000 is_a: UBERON:0003891 ! stroma is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0010234 name: palatopharyngeus muscle def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [Wikipedia:Palatopharyngeus_muscle] subset: human_reference_atlas synonym: "musculus palatopharyngeus" RELATED OMO:0003011 [Wikipedia:Palatopharyngeus_muscle] synonym: "palatopharyngeal muscle" EXACT [] synonym: "palatopharyngeus" EXACT [FMA:46666] synonym: "pharyngopalatinus" RELATED [Wikipedia:Palatopharyngeus_muscle] synonym: "pharyngopalatinus muscle" EXACT [Wikipedia:Palatopharyngeus_muscle] xref: FMA:46666 xref: SCTID:244796000 xref: Wikipedia:Palatopharyngeus_muscle is_a: UBERON:0000933 {source="FMA"} ! chordate pharyngeal muscle is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png" xsd:anyURI property_value: external_definition "Palatopharyngeus is a muscle that attaches to the palatine bones, soft palate, and pharynx and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: structure_notes "It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae" xsd:string [Term] id: UBERON:0010235 name: uvular muscle def: "The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]." [Wikipedia:Musculus_uvulae] synonym: "azygos uvulae" RELATED [Wikipedia:Musculus_uvulae] synonym: "m. uvulae" RELATED [Wikipedia:Musculus_uvulae] synonym: "musculus uvulae" RELATED [Wikipedia:Musculus_uvulae] synonym: "musculus uvulae muscle" RELATED [Wikipedia:Musculus_uvulae] synonym: "uvulae muscle" RELATED [Wikipedia:Musculus_uvulae] synonym: "uvular muscle" EXACT [FMA:46733] xref: FMA:46733 xref: SCTID:244797009 xref: Wikipedia:Musculus_uvulae is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray169.png" xsd:anyURI property_value: external_definition "The muscle of the uvuli is an integral part of the soft palate and is innervated by Cranial Nerve X .[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010238 name: torus pylorus def: "A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal." [http://medical-dictionary.thefreedictionary.com/torus+pyloricus] synonym: "torus pyloricus" EXACT [] xref: SCTID:14214007 is_a: UBERON:0000064 ! organ part relationship: never_in_taxon NCBITaxon:314146 relationship: part_of UBERON:0001166 ! pylorus [Term] id: UBERON:0010239 name: spiral colon def: "A variant of the ascending colon in ruminants and pigs." [Wikipedia:Spiral_colon] synonym: "coiled colon" EXACT [] xref: NCIT:C92438 xref: UMLS:C0227374 {source="ncithesaurus:Spiral_Colon"} xref: Wikipedia:Spiral_colon is_a: UBERON:0000168 ! proximal-distal subdivision of colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:35497 relationship: present_in_taxon NCBITaxon:9845 property_value: editor_note "Consider merging with ascending colon" xsd:string [Term] id: UBERON:0010240 name: zygomatic gland def: "A salivary gland best developed in carnivores; located above the zygomatic arch and below the eye. Enlargement or mucocele of the gland causes exophthalmos." [http://medical-dictionary.thefreedictionary.com/zygomatic+gland] synonym: "orbital gland" RELATED [] synonym: "superior buccal gland" RELATED [] synonym: "superior buccal salivary gland" RELATED [] synonym: "upper molar gland" RELATED [] xref: NCIT:C77624 xref: UMLS:C2700338 {source="ncithesaurus:Zygomatic_Gland"} is_a: UBERON:0012102 ! buccal salivary gland [Term] id: UBERON:0010241 name: molar gland comment: a variety of mammals have salivary glands variously terms upper molar/buccal gland - this class groups all of these synonym: "molar salivary gland" EXACT [FMA:59794] xref: FMA:59794 xref: SCTID:59637006 is_a: UBERON:0012102 ! buccal salivary gland [Term] id: UBERON:0010242 name: anterior buccal gland def: "The racemose, mucous or serous glands in the submucous tissue of the cheeks." [ISBN:0-683-40008-8, MP:0009519] subset: pheno_slim synonym: "anterior buccal salivary gland" RELATED [] xref: MA:0002700 is_a: UBERON:0012102 ! buccal salivary gland [Term] id: UBERON:0010243 name: merocrine gland def: "An exocrine gland whose secretions are excreted via exocytosis from secretory cells into an epithelial-walled duct or ducts and thence onto a bodily surface or into the lumen; the gland releases its product and no part of the gland is lost or damaged." [MGI:anna, MP:0013544, Wikipedia:Merocrine] subset: pheno_slim xref: BTO:0002324 xref: MA:0003041 xref: Wikipedia:Merocrine is_a: UBERON:0002365 ! exocrine gland property_value: has_relational_adjective "merocrine" xsd:string [Term] id: UBERON:0010244 name: choroid tapetum lucidum def: "A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] synonym: "choroidal tapetum lucidum" EXACT [] synonym: "tapetum choroideae" EXACT [BTO:0001828] xref: BTO:0001828 xref: SCTID:3034006 xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye relationship: part_of UBERON:0001776 ! optic choroid property_value: external_ontology_notes "we make the assumption that the BTO class belongs here rather than with the parent; the other type is the retinal type" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0010245 name: retinal tapetum lucidum def: "A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye relationship: part_of UBERON:0000966 ! retina relationship: present_in_taxon NCBITaxon:30559 {editor="cjm", source="PMID:14738502"} relationship: present_in_taxon NCBITaxon:32443 {editor="cjm", source="PMID:14738502"} relationship: present_in_taxon NCBITaxon:8493 {editor="cjm", source="PMID:14738502"} relationship: present_in_taxon NCBITaxon:9263 {editor="cjm", source="PMID:14738502"} property_value: taxon_notes "as seen in teleosts, crocodiles, marsupials and fruit bats" xsd:string {source="WP"} property_value: taxon_notes "In crocodilians, a semicircular area of the retinal epithelium in the superior fundus shows a fair sulfur yellow coloration and is specialized as a tapetum lucidum." xsd:string {source="PMID:14738502", taxon="NCBITaxon:8493"} property_value: taxon_notes "In the tapetal area, no melanosomes are formed indicating a nonocclusible tapetum in the Caiman sclerops." xsd:string {source="PMID:14738502", taxon="NCBITaxon:8499"} property_value: taxon_notes "Retinal tapeta lucida are common in fish and some reptiles, but rarely occur in mammals. In most of these species the retinal tapetum can be classified as either a lipid (in some teleosts, mammals) or guanine type (in some teleosts, reptiles). Another differentiation can be made among the retinal tapeta lucida based on whether the tapetum is occlusible (found in most of teleosts), or nonocclusible (or static) (found in mammals)" xsd:string {source="PMID:14738502"} property_value: taxon_notes "the tapetum lucidum is an integral part of the pigment epithelium in primitive teleosts (lying in the pro- cesses of the pigmented epithelial cells). It can vary in chemical nature." xsd:string {source="PMID:14738502", taxon="NCBITaxon:32443"} [Term] id: UBERON:0010246 name: choroidal guanine tapetum def: "A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0010244 ! choroid tapetum lucidum relationship: present_in_taxon NCBITaxon:7778 relationship: present_in_taxon NCBITaxon:7864 property_value: taxon_notes "A choroidal tapetum of reflecting cells lying immediately outside the choriocapillaris is formed in a few primitive teleosts." xsd:string {source="PMID:14738502", taxon="NCBITaxon:32443"} property_value: taxon_notes "elasmobranchii (skates, rays, and sharks) and chimaeras" xsd:string {source="WP"} property_value: taxon_notes "The elasmobranch tapetum in Squalus and Scyliorhinus con- sists of sheets of 12-13 superposed guanine crystals in the choroid." xsd:string {source="PMID:14738502", taxon="NCBITaxon:7778"} [Term] id: UBERON:0010247 name: choroidal tapetum cellulosum def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] comment: The choroidal stroma adjacent to the tapetum lucidum contains numerous small blood vessels that penetrate the tapetal layer to form a single-layered capillary network, known as the choriocapillaris, on the surface of the tapetum. The tapetum cellulosum is thus interposed between the large branching vessels in the choroid and the single layer of the choriocapillaris beneath the retinal epithelium[PMID:14738502] synonym: "choroid tapetum cellulosum" EXACT [] xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0010244 ! choroid tapetum lucidum relationship: present_in_taxon NCBITaxon:33554 {editor="cjm", notes="most carnivores", source="PMID:14738502"} relationship: present_in_taxon NCBITaxon:9721 {editor="cjm", source="PMID:14738502"} relationship: present_in_taxon NCBITaxon:9989 {editor="cjm", source="PMID:14738502", taxon="spotted cavy"} [Term] id: UBERON:0010248 name: choroidal tapetum fibrosum def: "A choroid tapetum lucidum that is an array of extracellular fibers." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] synonym: "fibrous tapetum" RELATED [NCBITaxon:9845, PMID:14738502] xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0010244 ! choroid tapetum lucidum relationship: present_in_taxon NCBITaxon:9788 {editor="cjm", source="PMID:14738502"} relationship: present_in_taxon NCBITaxon:9845 {editor="cjm", source="PMID:14738502"} property_value: taxon_notes "cows, sheep, goats and horses" xsd:string {source="WP"} [Term] id: UBERON:0010249 name: posterior meningeal artery def: "The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen." [Wikipedia:Posterior_meningeal_artery] subset: human_reference_atlas synonym: "arteria meningea posterior" RELATED OMO:0003011 [Wikipedia:Posterior_meningeal_artery] synonym: "meningeal branches of the ascending pharyngeal artery" RELATED [Wikipedia:Posterior_meningeal_artery] synonym: "posterior meningeal arteries" RELATED OMO:0003004 [Wikipedia:Posterior_meningeal_artery] synonym: "terminal branch of ascending pharyngeal artery" EXACT [FMA:49503] xref: FMA:49503 xref: NCIT:C33369 xref: UMLS:C0221310 {source="ncithesaurus:Posterior_Meningeal_Artery"} xref: Wikipedia:Posterior_meningeal_artery is_a: UBERON:0003474 ! meningeal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png" xsd:anyURI [Term] id: UBERON:0010250 name: middle meningeal artery def: "The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma." [Wikipedia:Middle_meningeal_artery] subset: human_reference_atlas synonym: "arteria meningea media" RELATED OMO:0003011 [Wikipedia:Middle_meningeal_artery] xref: FMA:49711 xref: SCTID:278100005 xref: Wikipedia:Middle_meningeal_artery is_a: UBERON:0003474 ! meningeal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Middle_meningeal_artery.png" xsd:anyURI [Term] id: UBERON:0010251 name: anterior meningeal artery def: "A meningeal branch to the dura mater arising from the anterior ethmoidal artery." [Wikipedia:Anterior_ethmoidal_artery#Branches] subset: human_reference_atlas synonym: "a. ethmoidalis anterior" RELATED OMO:0003011 [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior ethmoid arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior ethmoid artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal branch of anterior ethmoidal artery" EXACT [FMA:49993] synonym: "arteria ethmoidalis anterior" RELATED OMO:0003011 [Wikipedia:Anterior_ethmoidal_artery] synonym: "ramus meningeus anterior (arteria ethmoidalis anterioris)" EXACT OMO:0003011 [FMA:49993, FMA:TA] xref: FMA:49993 xref: NCIT:C32099 xref: SCTID:369327009 xref: UMLS:C0226187 {source="ncithesaurus:Anterior_Meningeal_Artery"} xref: Wikipedia:Anterior_ethmoidal_artery#Branches is_a: UBERON:0003474 ! meningeal artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png" xsd:anyURI property_value: editor_note "this needs checking as part of a general revision of the blood vessels and their branches - unclear if the anterior meningeal artery should be treated separately from the anterior ethmoidal artery (ie as a branch) or the same thing" xsd:string [Term] id: UBERON:0010252 name: 1st arch mandibular mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch mandibular mesenchyme." [OBOL:automatic] xref: EHDAA2:0000037 is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme is_a: UBERON:0010259 {source="inferred"} ! 1st arch mesenchyme from neural crest relationship: develops_from UBERON:0007098 ! mandibular neural crest relationship: part_of UBERON:0009584 {source="EHDAA2"} ! 1st arch mandibular mesenchyme relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010253 name: 1st arch maxillary mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch maxillary mesenchyme." [OBOL:automatic] xref: EHDAA2:0000044 is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme is_a: UBERON:0010259 ! 1st arch mesenchyme from neural crest relationship: part_of UBERON:0010045 {source="EHDAA2"} ! 1st arch maxillary mesenchyme relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010254 name: 2nd arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 2nd arch mesenchyme." [OBOL:automatic] synonym: "branchial arch 2 mesenchyme from neural crest" RELATED [] synonym: "neural crest derived arch 2 mesenchyme" EXACT [] synonym: "pharyngeal arch 2 mesenchyme from neural crest" EXACT [] xref: EHDAA2:0000068 xref: EMAPA:16281 is_a: UBERON:0005689 ! 2nd arch mesenchyme is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest relationship: develops_from UBERON:0007099 ! hyoid neural crest relationship: part_of UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010255 name: 3rd arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 3rd arch mesenchyme." [OBOL:automatic] synonym: "3rd pharyngeal arch mesenchyme derived from neural crest" EXACT [VHOG:0000571] synonym: "branchial arch 3 mesenchyme from neural crest" RELATED [] synonym: "mesenchyme derived from neural crest of mesenchyme of 3rd arch" EXACT [EMAPA:16404] synonym: "neural crest derived arch 3 mesenchyme" EXACT [] synonym: "pharyngeal arch 3 mesenchyme from neural crest" EXACT [] xref: EHDAA2:0000083 xref: EMAPA:16404 xref: VHOG:0000571 is_a: UBERON:0005690 ! 3rd arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest relationship: part_of UBERON:0005690 {source="EHDAA2"} ! 3rd arch mesenchyme property_value: homology_notes "In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000571", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0010256 name: 4th arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 4th arch mesenchyme." [OBOL:automatic] synonym: "4th pharyngeal arch mesenchyme derived from neural crest" EXACT [VHOG:0000580] synonym: "branchial arch 4 mesenchyme from neural crest" RELATED [] synonym: "mesenchyme derived from neural crest of mesenchyme of 4th arch" EXACT [EMAPA:16772] synonym: "neural crest derived arch 4 mesenchyme" EXACT [] synonym: "pharyngeal arch 4 mesenchyme from neural crest" EXACT [] xref: EHDAA2:0000098 xref: EMAPA:16772 xref: VHOG:0000580 is_a: UBERON:0005691 ! 4th arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest relationship: part_of UBERON:0005691 {source="EHDAA2"} ! 4th arch mesenchyme relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest property_value: homology_notes "In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000580", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0010257 name: 6th arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 6th arch mesenchyme." [OBOL:automatic] synonym: "branchial arch 6 mesenchyme from neural crest" RELATED [] synonym: "neural crest derived arch 6 mesenchyme" EXACT [] synonym: "pharyngeal arch 6 mesenchyme from neural crest" EXACT [] xref: EHDAA2:0004077 is_a: UBERON:0010031 ! 6th arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest relationship: part_of UBERON:0010031 {source="EHDAA2"} ! 6th arch mesenchyme relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010258 name: mesenchyme from rhombencephalic neural crest def: "Mesenchyme that develops_from a rhombencephalon neural crest." [OBOL:automatic] xref: EHDAA2:0004423 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0014387 ! mesenchyme derived from neural crest relationship: develops_from UBERON:0003852 ! rhombencephalon neural crest relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest [Term] id: UBERON:0010259 name: 1st arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch mesenchyme." [OBOL:automatic] synonym: "branchial arch 1 mesenchyme from neural crest" RELATED [] synonym: "mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129] synonym: "neural crest derived arch 1 mesenchyme" EXACT [] synonym: "pharyngeal arch 1 mesenchyme from neural crest" EXACT [] xref: EMAPA:16129 is_a: UBERON:0010042 ! 1st arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest relationship: part_of UBERON:0010042 ! 1st arch mesenchyme [Term] id: UBERON:0010260 name: umbilical blood vessel def: "One of the three blood vessels, usually one large umbilical vein and two small umbilical arteries, buried within Wharton's jelly, that transport blood to and from the placenta, where exchange between the mother and fetus takes place; the umbilical vein carries oxygenated, nutrient-rich blood from the placenta to the fetus, and the umbilical arteries carry deoxygenated, nutrient-depleted blood from the fetus to the placenta." [MP:0003230] subset: pheno_slim synonym: "allantoic vessel" EXACT [Hymans:Hymans] synonym: "umbilical cord blood vessel" EXACT [] synonym: "umbilical cord blood vessels" RELATED OMO:0003004 [] synonym: "umbilical vasculature" RELATED [] synonym: "umbilical vessel" EXACT [] xref: EMAPA:36493 xref: SCTID:408728001 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0010262 name: operculum of brain def: "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery[WP]." [Wikipedia:Operculum_(brain)] subset: pheno_slim synonym: "operculum" BROAD [HP:0100954] xref: SCTID:362351003 xref: Wikipedia:Operculum_(brain) is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 ! frontal lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png" xsd:anyURI [Term] id: UBERON:0010263 name: obsolete embryoid body def: "Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors." [BTO:0001718, Wikipedia:Embryoid_body] comment: Obsoled, as does not cover naturally occurring entity xref: Wikipedia:Embryoid_body is_obsolete: true consider: BTO:0001718 [Term] id: UBERON:0010264 name: hepatopancreas def: "An organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food." [Wikipedia:Hepatopancreas] xref: BTO:0000597 xref: MESH:D043143 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Hepatopancreas is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0006925 {source="BTO"} ! digestive system gland relationship: part_of UBERON:0001045 {source="BTO"} ! midgut relationship: present_in_taxon NCBITaxon:6447 relationship: present_in_taxon NCBITaxon:6657 [Term] id: UBERON:0010265 name: mollusc hepatopancreas xref: Wikipedia:Digestive_system_of_gastropods#Hepatopancreas is_a: UBERON:0010264 ! hepatopancreas [Term] id: UBERON:0010266 name: arthropod hepatopancreas def: "Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage." [BTO:0000597] synonym: "crustacean digestive gland" RELATED [] synonym: "midgut gland" RELATED [BTO:0000597] is_a: UBERON:0005057 ! immune organ is_a: UBERON:0010264 ! hepatopancreas property_value: editor_note "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0010267 name: obsolete inferior reticular formation def: "Missing definition for term UBERON:0010267. Please replace it using linked reference." [GO:0021728] is_obsolete: true [Term] id: UBERON:0010268 name: obsolete superior reticular formation def: "Missing definition for term UBERON:0010268. Please replace it using linked reference." [GO:0021729] is_obsolete: true [Term] id: UBERON:0010269 name: filum terminale internum synonym: "internal part of filum terminale" EXACT [FMA:256524] xref: FMA:256524 xref: SCTID:315673007 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] id: UBERON:0010270 name: filum terminale externum synonym: "external part of filum terminale" EXACT [FMA:256526] xref: FMA:256526 xref: SCTID:315573001 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] id: UBERON:0010271 name: musculus retractor bulbi def: "Cranial nerve VI innervated; ventral and posterior to the eye." [AAO:0010122] synonym: "M. retractor bulbi" EXACT [] synonym: "retractor bulbi" EXACT [] synonym: "retractor bulbi muscle" EXACT [] xref: AAO:0010122 is_a: UBERON:0001601 {source="cjm"} ! extra-ocular muscle relationship: never_in_taxon NCBITaxon:9606 {source="Wikipedia"} relationship: present_in_taxon NCBITaxon:40674 property_value: editor_note "TODO - add innervation relationships" xsd:string property_value: taxon_notes "In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection" xsd:string {source="wiki/Abducens_nerve"} [Term] id: UBERON:0010272 name: hyoid apparatus def: "A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage." [http://www.biology-online.org/dictionary/Hyoid_apparatus] synonym: "apparatus hyobranchialis" RELATED OMO:0003011 [] synonym: "apparatus hyoideus" RELATED [http://www.biology-online.org/dictionary/Hyoid_apparatus] synonym: "hyobranchial apparatus" RELATED [AAO:0000225] synonym: "hyolingual system" RELATED [AAO:0000225] xref: AAO:0000225 xref: AAO:0000682 xref: EMAPA:37600 {source="MA:th"} xref: http://palaeos.com/vertebrates/bones/gill_arches/images/ReptileHyoids.gif xref: MA:0003037 xref: SCTID:410035009 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of hyolaryngeal complex (AAO:0000226)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000225", ontology="AAO"} property_value: external_definition "Apparatus located in the floor of the mouth, under the mandibular arcade. The apparatus consists of a central corpus and four pairs of processes. This apparatus serves as the site of insertion for a variety of muscles associated with movements of the tongue and as the origin of the m. hyoglossus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000225", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "In most mammals, including humans, the hyoid apparatus is shaped like a horseshoe. However, in humans, some of the bones of the hyoid apparatus are fused into a single bone called os hyoideum. In other animals such as frogs, the hyoid apparatus has a hyoid body that is chiefly comprised of hyaline cartilage and two pairs of processes (i.e. alary process and the posteriolateral process)." xsd:string [Term] id: UBERON:0010273 name: zone of hyoid bone def: "A zone of bone organ that is part of a hyoid bone." [OBOL:automatic] synonym: "hyoid bone zone" EXACT [FMA:59494] xref: FMA:59494 xref: SCTID:119534005 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001685 ! hyoid bone [Term] id: UBERON:0010276 name: space in vertebral column def: "Any anatomical space that is part of a vertebral column." [OBOL:automatic] synonym: "vertebral column opening" EXACT [AAO:0000700] synonym: "vertebral conduit" EXACT [] xref: AAO:0000700 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0010277 name: mesocardium def: "The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind." [http://medical-dictionary.thefreedictionary.com/mesocardium] subset: pheno_slim synonym: "cardiac mesentery" RELATED [EMAPA:16212] xref: MA:0000098 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004873 {source="EHDAA2"} ! splanchnopleure relationship: part_of UBERON:0003282 ! mesentery of heart property_value: editor_note "consider merging with heart mesentery" xsd:string property_value: has_relational_adjective "mesocardial" xsd:string [Term] id: UBERON:0010279 name: pericardial sinus def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery." [Wikipedia:Pericardial_sinus] synonym: "oblique pericardial" RELATED [Wikipedia:Pericardial_sinus] synonym: "oblique pericardial sinus" RELATED [Wikipedia:Pericardial_sinus] synonym: "oblique sinus" RELATED [Wikipedia:Pericardial_sinus] synonym: "pericardial sinuses" RELATED [Wikipedia:Pericardial_sinus] synonym: "transverse pericardial" RELATED [Wikipedia:Pericardial_sinus] synonym: "transverse pericardial sinus" RELATED [Wikipedia:Pericardial_sinus] xref: SCTID:314273005 xref: Wikipedia:Pericardial_sinus is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001074 {source="FMA-abduced"} ! pericardial cavity relationship: part_of UBERON:0010277 {source="MA-abduced"} ! mesocardium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png" xsd:anyURI [Term] id: UBERON:0010283 name: oblique pericardial sinus def: "The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium.[WP,unvetted]." [Wikipedia:Pericardial_sinus] synonym: "oblique sinus of pericardial cavity" EXACT [FMA:77133] xref: FMA:77133 xref: Wikipedia:Pericardial_sinus is_a: UBERON:0010279 ! pericardial sinus [Term] id: UBERON:0010284 name: lacrimal punctum def: "A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi." [Wikipedia:Lacrimal_punctum] subset: pheno_slim synonym: "lacrimal point" RELATED [Wikipedia:Lacrimal_punctum] synonym: "lacrimal puncta" RELATED OMO:0003004 [Wikipedia:Lacrimal_punctum] synonym: "puncta lacrimalia" RELATED OMO:0003011 [Wikipedia:Lacrimal_punctum] xref: FMA:59365 xref: SCTID:263344003 xref: Wikipedia:Lacrimal_punctum is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0001850 ! lacrimal drainage system property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/53/Gray895.png" xsd:anyURI property_value: function_notes "collect tears produced by the lacrimal glands" xsd:string [Term] id: UBERON:0010285 name: midbrain basal plate def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ZFA:0000761] subset: efo_slim synonym: "basal plate midbrain" EXACT [TAO:0000761] synonym: "basal plate midbrain region" EXACT [ZFA:0000761] xref: DHBA:12322 xref: EFO:0003567 xref: EHDAA2:0004375 xref: TAO:0000761 xref: ZFA:0000761 is_a: UBERON:0002020 {source="EHDAA2"} ! gray matter relationship: part_of UBERON:0009581 {source="EHDAA2"} ! midbrain mantle layer relationship: part_of UBERON:0010286 {source="ZFA"} ! midbrain neural tube [Term] id: UBERON:0010286 name: midbrain neural tube def: "Portion of neural tube that gives rise to the midbrain." [ZFA:0007039] xref: TAO:0007039 xref: ZFA:0007039 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003080 {source="ZFA"} ! anterior neural tube property_value: editor_note "we follow ZFA in temporally dividing midbrain NT from presumptive midbrain, but in future this may be collapsed" xsd:string [Term] id: UBERON:0010287 name: motor root of facial nerve synonym: "facial nerve motor root" EXACT [FMA:53419] synonym: "motor component of the VIIth (facial) nerve" EXACT [] synonym: "seventh cranial nerve motor root" EXACT [FMA:53419] xref: DHBA:12863 xref: FMA:53419 xref: SCTID:280191009 is_a: UBERON:0004674 {source="FMA"} ! facial nerve root relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon [Term] id: UBERON:0010288 name: obsolete future medulla oblongata is_obsolete: true consider: UBERON:0001896 [Term] id: UBERON:0010289 name: scleral cartilage def: "Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye." [http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage] synonym: "scleral cartilage element" EXACT [PMID:17051547] synonym: "scleral cartilaginous cup" NARROW SENSU [PMID:17051547] synonym: "sclerotic cartilage" EXACT [ZFA:0001509] synonym: "sclerotic cartilages" RELATED OMO:0003004 [ZFA:0001509] xref: TAO:0001509 xref: ZFA:0001509 is_a: UBERON:0003932 {source="ZFA"} ! cartilage element of chondrocranium is_a: UBERON:0010296 ! scleral skeletal element relationship: never_in_taxon NCBITaxon:32525 {source="PMID:17051547 - but present in monotremes"} relationship: part_of UBERON:0001773 {source="cjm"} ! sclera property_value: editor_note "consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage" xsd:string property_value: editor_note "relationship to sclera - overlaps?" xsd:string property_value: external_definition "Bilaterally paired thin continuous band of cartilage that sagittally encircles the eye.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001509", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "May be calcified in chondrichthyans. Tetrapods without this element (e.g., snakes and mammals) have a collagenous sclera. May not be homologous - see http://www.ncbi.nlm.nih.gov/pubmed/17051547. cup-shaped in birds. Present in monotremes." xsd:string [Term] id: UBERON:0010290 name: scleral ossicle def: "A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage." [PMID:17051547] synonym: "scleral ossicle" EXACT [PMID:17051547] synonym: "sclerotic bone" EXACT [ZFA:0001411] synonym: "sclerotic ossicle" EXACT [] xref: SCTID:45632000 is_a: UBERON:0010296 ! scleral skeletal element relationship: never_in_taxon NCBITaxon:7777 {source="PMID:17051547 Walls 1942"} relationship: never_in_taxon NCBITaxon:7878 {source="PMID:17051547 Kemp 1999"} relationship: part_of UBERON:0001697 {source="ZFA"} ! orbit of skull property_value: function_notes "The function of these elements is to support the eye from within the sclera; scleral ossicles play an additional important role during accommodation in terrestrial vertebrates (Lemmrich, 1931; Walls, 1942; King and McLelland, 1984)." xsd:string property_value: taxon_notes "The distribution of scleral ossicles and scleral cartilage among verte- brate taxa is not the same. Some taxa (e.g., birds) have both elements; some only have one element (e.g., crocodiles only have a scleral cartilage); while others (e.g., snakes) have neither element (Walls, 1942) number of ossicles making up the sclerotic ring as well as the shape of both the individual plates and the sclerotic ring is variable among tetrapod taxa.... It is therefore extremely likely that scleral skeletal elements (ossicles and cartilage) of all rep- tiles (including birds) are homologous (but cannot be assumed for reptiles and teleosts)" xsd:string [Term] id: UBERON:0010291 name: layer of sclera xref: Wikipedia:Sclera#Histology is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001773 {source="cjm"} ! sclera [Term] id: UBERON:0010292 name: episcleral layer of eyeball def: "The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels." [Wikipedia:Episcleral_layer] synonym: "episclera" EXACT [FMA:58362] synonym: "episcleral layer" EXACT [FMA:58362] synonym: "lamina episcleralis" EXACT OMO:0003011 [Wikipedia:Episcleral_layer] xref: FMA:58362 xref: NCIT:C12989 xref: SCTID:368850003 xref: UMLS:C0229109 {source="ncithesaurus:Episclera"} xref: Wikipedia:Episcleral_layer is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera [Term] id: UBERON:0010293 name: suprachoroid lamina def: "On the external surface of the optic choroid is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellae-each lamella consisting of a network of fine elastic fibers among which are branched pigment cells." [Wikipedia:Suprachoroid_lamina] synonym: "fusca sclerae" RELATED [Wikipedia:Suprachoroid_lamina] synonym: "lamina fusca of sclera" RELATED [FMA:58368] synonym: "lamina fusca sclerae" RELATED OMO:0003011 [FMA:TA, Wikipedia:Suprachoroid_lamina] synonym: "lamina fusca scletae" RELATED [Wikipedia:Suprachoroid_lamina] synonym: "lamina suprachorioidea" EXACT OMO:0003011 [Wikipedia:Suprachoroid_lamina] synonym: "lamina suprachorioidea" RELATED OMO:0003011 [Wikipedia:Suprachoroid_lamina] synonym: "lamina suprachoroidea" EXACT OMO:0003011 [Wikipedia:Suprachoroid_lamina] synonym: "suprachoroid lamina of sclera" RELATED [FMA:58368] xref: FMA:58368 xref: SCTID:280607003 xref: Wikipedia:Suprachoroid_lamina is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0013399 ! blood vessel layer of choroid property_value: external_ontology_notes "FMA treats this as part of the sclera" xsd:string {external_ontology="FMA"} property_value: structure_notes "The spaces between the lamellae are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted." xsd:string [Term] id: UBERON:0010294 name: scleral endothelium def: "An endothelium that is part of a sclera." [OBOL:automatic] is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera is_a: UBERON:0015808 ! eye epithelium [Term] id: UBERON:0010295 name: substantia propria of sclera def: "A stroma that is part of a sclera." [OBOL:automatic] synonym: "scleral stroma" EXACT [FMA:58365] synonym: "stroma of sclera" EXACT [FMA:58365] synonym: "subsantia propria" BROAD [] synonym: "subsantia propria sclerae" EXACT [FMA:58365] synonym: "substantia propria sclerae" EXACT OMO:0003011 [FMA:58365, FMA:TA] xref: FMA:58365 xref: NCIT:C33652 xref: SCTID:368851004 xref: UMLS:C1704397 {source="ncithesaurus:Substantia_Propria"} is_a: UBERON:0003891 ! stroma is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera [Term] id: UBERON:0010296 name: scleral skeletal element is_a: UBERON:0010321 ! skeletal element of eye region relationship: never_in_taxon NCBITaxon:40674 {source="PMID:17051547"} relationship: part_of UBERON:0000019 ! camera-type eye property_value: curator_notes "An eye adnexal structure, but not necessarily part of the eyeball" xsd:string [Term] id: UBERON:0010297 name: endochondral scleral ossicle synonym: "sclerotic bones" RELATED OMO:0003004 [ZFA:0001411] xref: TAO:0001411 xref: ZFA:0001411 is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010290 ! scleral ossicle relationship: develops_from UBERON:0010289 {source="ZFA"} ! scleral cartilage relationship: never_in_taxon NCBITaxon:32523 relationship: part_of UBERON:0002241 {source="ZFA"} ! chondrocranium property_value: external_definition "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001411", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "The scleral ossicles [of teleosts] are reported to form indirectly by endochondral (Hall and Miyake, 1992) or by perichondral ossification (Patterson, 1977) from a cartilage element that is also present in the sclera. This is unlike the scleral ossicles of reptiles, which develop directly from ectomesenchyme (i.e., intramembranous ossification) and independently from the scleral cartilage" xsd:string {source="PMID:17051547"} [Term] id: UBERON:0010298 name: intramembranous scleral ossicle comment: are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991) is_a: UBERON:0002514 {source="PMID:11237469"} ! intramembranous bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010290 ! scleral ossicle relationship: never_in_taxon NCBITaxon:32443 property_value: development_notes "The scleral ossicles [in reptiles]" xsd:string [Term] id: UBERON:0010299 name: scleral mesenchyme def: "Mesenchyme surrounding the developing optic cup which develops into the sclera." [https://orcid.org/0000-0002-6601-2165, PMID:16496288] is_a: UBERON:0003104 ! mesenchyme property_value: development_notes "The mesenchyme surrounding the developing optic cup differentiates into the sclera, the dense fibrous coat of the eye.. http://www.ncbi.nlm.nih.gov/pubmed/16496288" xsd:string [Term] id: UBERON:0010300 name: epithelial scleral papilla layer synonym: "scleral papillae" EXACT [] is_a: UBERON:0000483 ! epithelium property_value: development_notes "The scleral ossicles are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991)" xsd:string property_value: taxon_notes "Scleral papillae (which induce scleral ossicles in birds) have not been reported in teleosts, but evidence for their presence may not have been sought" xsd:string [Term] id: UBERON:0010302 name: amnioserosa def: "A single extraembryonic epithelium, which closes the germband dorsally." [DOI:10.1073/pnas.0709145105] subset: efo_slim synonym: "amnion-serosa" RELATED [BTO:0004800] xref: BTO:0004800 xref: EFO:0000250 xref: FBbt:00000095 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010303 {source="DOI:10.1073/pnas.0709145105"} ! extraembryonic epithelium property_value: editor_note "May be obsoleted once added to insect ontology. Coordinate with cell type in CL" xsd:string [Term] id: UBERON:0010303 name: extraembryonic epithelium def: "An epithelium that is part of a extraembryonic structure." [OBOL:automatic] synonym: "extra-embryonic epithelium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005292 ! extraembryonic tissue relationship: part_of UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0010304 name: non-keratinized stratified squamous epithelium def: "Stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesizes but does not accumulate keratin. Examples: epithelium of vagina, epithelium of wall of esophagus." [FMA:45569, Wikipedia:Stratified_squamous_epithelium#Nonkeratinized] synonym: "epithelium stratificatum squamosum noncornificatum" EXACT [FMA:45569] synonym: "nonkeratinizing stratified squamous epithelium" EXACT [FMA:45569] synonym: "stratified squamous non-keratinized epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "stratified squamous nonkeratinizing epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: FMA:45569 xref: Wikipedia:Stratified_squamous_epithelium#Nonkeratinized is_a: UBERON:0006915 {source="FMA"} ! stratified squamous epithelium [Term] id: UBERON:0010305 name: subdivision of conjunctiva def: "One of the three major regions of the conjunctiva." [Wikipedia:Conjunctiva#Gross_anatomy] subset: grouping_class synonym: "conjunctiva region" EXACT [] synonym: "region of conjunctiva" EXACT [FMA:59023] xref: FMA:59023 xref: SCTID:29445007 xref: Wikipedia:Conjunctiva#Gross_anatomy is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0010306 name: bulbar conjunctiva def: "The conjunctiva covering the anterior surface of the sclera and the surface epithelium of the cornea." [MP:0013402] comment: covers the eyeball, over the sclera. This region of the conjunctiva is tightly bound to the underlying sclera by Tenon's capsule and moves with the eyeball movements. subset: pheno_slim synonym: "ocular conjunctiva" EXACT [Wikipedia:Conjunctiva] xref: FMA:59024 xref: NCIT:C12902 xref: SCTID:264509009 xref: UMLS:C0229275 {source="ncithesaurus:Bulbar_Conjunctiva"} is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva [Term] id: UBERON:0010307 name: conjunctival fornix def: "The space formed by the junction of the bulbar and palpebral portions of the conjunctiva, that of the upper lid being the superior conjunctival fornix (fornix conjunctivae superior) and that of the lower lid, the inferior conjunctival fornix (fornix conjunctivae inferior); the fornix is loose and flexible, allowing the free movement of the lids and eyeball." [MGI:anna] subset: pheno_slim synonym: "conjunctiva fornix" EXACT [MGI:anna] synonym: "forniceal conjunctiva" EXACT [MGI:anna] synonym: "fornix conjunctiva" EXACT OMO:0003011 [Wikipedia:Conjunctiva] xref: EMAPA:37834 {source="MA:th"} xref: FMA:59016 xref: SCTID:276831007 is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva property_value: function_notes "It is loose and flexible, allowing the free movement of the lids and eyeball" xsd:string [Term] id: UBERON:0010308 name: os opticus def: "Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue." [PMID:16496288] synonym: "Gemminger's ossicle" EXACT [PMID:16496288] synonym: "os nervi optici" EXACT [PMID:16496288] is_a: UBERON:0010298 ! intramembranous scleral ossicle property_value: taxon_notes "At present, it has been documented in 219 species from 35 families, including perching birds, woodpeckers, hummingbirds, toucans, kingfishers, and falcons (Tiemeier, 1950). Morphologically, this element varies in shape from a complete encircling element in some woodpeckers (e.g., Melanerpes eryth- rocephalus) to an abbreviated arc in Gallus" xsd:string [Term] id: UBERON:0010309 name: palpebral bone def: "An ossified element investing the upper eyelid." [PMID:16496288, Wikipedia:Palpebral_(bone)] synonym: "palpebral" BROAD [] xref: Wikipedia:Palpebral_(bone) is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010321 ! skeletal element of eye region relationship: part_of UBERON:0001712 ! upper eyelid property_value: editor_note "PMID:16496288 says 'invests' the eyelid, is this consistent across taxa?" xsd:string property_value: taxon_notes "The most extreme development of the palpebral is found in the armored dino- saur Euoplocephalus tutus, where the bone forms a quarter-sphere and adducts to completely occlude the or- bit (Coombs, 1972; Vickaryous and Russell, 2003). Notwithstanding the superficially similar position, palpe- brals and tarsal plates differ both anatomically and developmentally and are not considered homologous (Gauthier et al., 1988)" xsd:string [Term] id: UBERON:0010310 name: nictitating membrane lamina def: "Thin cartilage element that stiffens the nictitating membrane." [PMID:16496288] comment: Morphology notes: Generally, the cartilage consists of a long narrow appendix which is followed by a variable crossbar[PMID:11325064] synonym: "cartilago intercipiens" EXACT [PMID:16496288] synonym: "nictitating membrane cartilage" EXACT [PMID:11325064] is_a: UBERON:0003933 ! cranial cartilage is_a: UBERON:0010321 ! skeletal element of eye region relationship: part_of UBERON:0010207 ! nictitating membrane relationship: present_in_taxon NCBITaxon:40674 property_value: taxon_notes "these laminae may consist of purely hyaline cartilage (cats and horses) or may be heavily invested with elastic fibers (dogs, pigs, and cows; Schlegel et al., 2001)" xsd:string [Term] id: UBERON:0010311 name: scleral sesamoid bone def: "A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle)." [PMID:16496288] synonym: "scleral sesamoid" EXACT [PMID:16496288] synonym: "scleral sesamoid element" EXACT [] synonym: "sesamoideum esclerae" EXACT [PMID:16496288] is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010290 ! scleral ossicle property_value: structure_notes "During contraction, the scleral sesamoid bone acts to anchor the pyramidal nictitating muscle to the sclera and divert the tendon from pro- jecting over the cornea. It remains to be determined whether this is indeed a true sesamoid (sensu; Vickaryous and Olson, 2006), as the scleral sesa- moid is actually invested within the synovial tendon sheath and not the tendon per se" xsd:string [Term] id: UBERON:0010312 name: immature eye def: "Developing anatomical structure that develops into the eyeball and associated structures." [ZFA:0001678] synonym: "future eye" EXACT [] xref: TAO:0002201 xref: ZFA:0001678 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003071 {evidence="definitional"} ! eye primordium property_value: external_definition "Multi-tissue structure that consists of the structures that develop into the retina and lens.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002201", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0010313 name: neural crest-derived structure def: "An anatomical structure that develops from the neural crest." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0002342 ! neural crest property_value: curator_notes "Grouping term for query purposes" xsd:string [Term] id: UBERON:0010314 name: structure with developmental contribution from neural crest def: "An anatomical structure that has some part that develops from the neural crest." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class is_a: UBERON:0000061 ! anatomical structure property_value: curator_notes "Grouping term for query purposes" xsd:string [Term] id: UBERON:0010316 name: germ layer / neural crest is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0002532 ! epiblast (generic) [Term] id: UBERON:0010317 name: obsolete germ layer / neural crest derived structure comment: Grouping term for query purposes is_obsolete: true consider: UBERON:0000923 consider: UBERON:0010313 [Term] id: UBERON:0010321 name: skeletal element of eye region def: "A skeletal element that is part of a orbital region." [OBOL:automatic] synonym: "eye skeleton" RELATED [] synonym: "ocular skeleton" RELATED [] synonym: "skeletal element of orbital region" RELATED [] is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004088 ! orbital region relationship: part_of UBERON:0011156 ! facial skeleton [Term] id: UBERON:0010323 name: cranial skeletal system def: "Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000049] synonym: "cranial skeleton" NARROW [] synonym: "cranium" RELATED INCONSISTENT [ZFA:0000737] synonym: "osteocranium" NARROW [] xref: AAO:0000109 xref: AAO:0000971 xref: AAO:0010185 xref: TAO:0000737 xref: VSAO:0000049 xref: XAO:0003075 xref: ZFA:0000737 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0011137 ! axial skeletal system property_value: curator_notes "that the cranial skeleton includes the pharyngeal arch skeleton. It is thus more inclusive that the cranium itself, and extends beyond the head in tetrapods. The AAO class called 'skull' belongs here, as it includes the whole splanchnocranium" xsd:string property_value: editor_note "we use 'cranial skeletal system', so that we can include the skull, which has joints/sutures as parts (recall, we follow FMA in distinguishing between the skeleton and skeletal system - only the latter includes joints)" xsd:string property_value: external_definition "Bony structure that encases the central nervous system and the primary sense organs of sight, olfaction, hearing, and equilibrium.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000109", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000737", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0010324 name: obsolete craniofacial region xref: VSAO:0000083 is_obsolete: true consider: UBERON:0001456 [Term] id: UBERON:0010325 name: obsolete craniofacial skeleton def: "Cranial skeleton derived from neural crest cells." [VSAO:0000082] synonym: "Cranio-facial skeleton" EXACT [VSAO:curator] xref: VSAO:0000082 is_obsolete: true consider: UBERON:0011156 [Term] id: UBERON:0010326 name: optic pedicel def: "Permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation." [ISBN:071676959X, PMID:16496288] synonym: "eye stalk" RELATED [] is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0010321 ! skeletal element of eye region [Term] id: UBERON:0010327 name: obsolete early digestive tract associated mesenchyme is_obsolete: true [Term] id: UBERON:0010328 name: limb bud mesenchyme def: "Mesenchyme that is part of a limb bud." [OBOL:automatic] is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme relationship: part_of UBERON:0004347 ! limb bud [Term] id: UBERON:0010329 name: paired limb/fin bud mesenchyme def: "Mesenchyme that is part of a limb/fin bud." [OBOL:automatic] is_a: UBERON:0010377 ! mesenchyme from somatopleure relationship: develops_from UBERON:0010377 {source="EHDAA2-abduced"} ! mesenchyme from somatopleure relationship: part_of UBERON:0004357 ! paired limb/fin bud [Term] id: UBERON:0010330 name: eyelid mesenchyme def: "Mesenchyme that is part of a developing eyelid." [OBOL:automatic] xref: EMAPA:32759 is_a: UBERON:0003314 ! eye mesenchyme relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0010332 name: epithelium of handplate def: "An epithelium that is part of a handplate." [OBOL:automatic] synonym: "handplate epithelium" EXACT [EHDAA2:0000730] xref: EHDAA2:0000730 xref: EMAPA:32630 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm relationship: part_of UBERON:0006875 ! embryonic handplate [Term] id: UBERON:0010333 name: extraembryonic membrane mesenchyme def: "Mesenchyme that is part of a extraembryonic membrane." [OBOL:automatic] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue relationship: develops_from UBERON:0005728 {source="EHDAA2-abduced"} ! extraembryonic mesoderm relationship: part_of UBERON:0005631 ! extraembryonic membrane [Term] id: UBERON:0010334 name: maxillary process mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a maxillary process mesenchyme." [OBOL:automatic] xref: EHDAA2:0004601 is_a: UBERON:0009526 ! maxillary process mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0010253 {source="EHDAA2"} ! 1st arch maxillary mesenchyme from neural crest relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme [Term] id: UBERON:0010335 name: maxillary process mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a maxillary process mesenchyme." [OBOL:automatic] xref: EHDAA2:0004602 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009526 ! maxillary process mesenchyme relationship: develops_from UBERON:0010338 {source="EHDAA2"} ! 1st arch maxillary mesenchyme from head mesenchyme relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme [Term] id: UBERON:0010336 name: mandibular process mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme." [OBOL:automatic] xref: EHDAA2:0004603 is_a: UBERON:0006905 ! mandibular process mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0010252 {source="EHDAA2"} ! 1st arch mandibular mesenchyme from neural crest relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme [Term] id: UBERON:0010337 name: mandibular process mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme." [OBOL:automatic] xref: EHDAA2:0004604 is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0006905 ! mandibular process mesenchyme relationship: develops_from UBERON:0010339 {source="EHDAA2"} ! 1st arch mandibular mesenchyme from head mesenchyme relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme [Term] id: UBERON:0010338 name: 1st arch maxillary mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch maxillary mesenchyme." [OBOL:automatic] xref: EHDAA2:0000043 is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme relationship: part_of UBERON:0010045 {source="EHDAA2"} ! 1st arch maxillary mesenchyme [Term] id: UBERON:0010339 name: 1st arch mandibular mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme." [OBOL:automatic] xref: EHDAA2:0000036 is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme relationship: part_of UBERON:0009584 {source="EHDAA2"} ! 1st arch mandibular mesenchyme [Term] id: UBERON:0010341 name: 1st arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme." [OBOL:automatic] synonym: "mesenchyme derived from head mesoderm of mesenchyme of 1st arch" EXACT [EMAPA:16130] xref: EMAPA:16130 is_a: UBERON:0010042 ! 1st arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme relationship: part_of UBERON:0010042 {source="EMAPA"} ! 1st arch mesenchyme [Term] id: UBERON:0010343 name: 2nd arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 2nd arch mesenchyme." [OBOL:automatic] synonym: "branchial arch 2 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 2 mesenchyme" EXACT [] synonym: "mesenchyme derived from head mesoderm of mesenchyme of 2nd arch" EXACT [EMAPA:16280] synonym: "pharyngeal arch 2 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0000067 xref: EMAPA:16280 is_a: UBERON:0005689 ! 2nd arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme relationship: part_of UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme [Term] id: UBERON:0010344 name: 3rd arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 3rd arch mesenchyme." [OBOL:automatic] synonym: "branchial arch 3 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 3 mesenchyme" EXACT [] synonym: "mesenchyme derived from head mesoderm of mesenchyme of 3rd arch" EXACT [EMAPA:16403] synonym: "pharyngeal arch 3 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0000082 xref: EMAPA:16403 is_a: UBERON:0005690 ! 3rd arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme relationship: part_of UBERON:0005690 {source="EHDAA2"} ! 3rd arch mesenchyme [Term] id: UBERON:0010345 name: 4th arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 4th arch mesenchyme." [OBOL:automatic] synonym: "branchial arch 4 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 4 mesenchyme" EXACT [] synonym: "mesenchyme derived from head mesoderm of mesenchyme of 4th arch" EXACT [EMAPA:16771] synonym: "pharyngeal arch 4 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0000097 xref: EMAPA:16771 is_a: UBERON:0005691 ! 4th arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme relationship: part_of UBERON:0005691 {source="EHDAA2"} ! 4th arch mesenchyme [Term] id: UBERON:0010347 name: 6th arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 6th arch mesenchyme." [OBOL:automatic] synonym: "branchial arch 6 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 6 mesenchyme" EXACT [] synonym: "pharyngeal arch 6 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0004078 is_a: UBERON:0010031 ! 6th arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme relationship: part_of UBERON:0010031 {source="EHDAA2"} ! 6th arch mesenchyme [Term] id: UBERON:0010348 name: hyoid pre-muscle mass synonym: "hyoid muscle plate" RELATED [] xref: EHDAA2:0000795 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010343 {source="EHDAA2"} ! 2nd arch mesenchyme from head mesenchyme [Term] id: UBERON:0010349 name: otic capsule pre-cartilage condensation def: "An otic capsule endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 is_a: UBERON:0004637 ! otic capsule [Term] id: UBERON:0010354 name: Reichert's cartilage pre-cartilage condensation synonym: "future Reichert's cartilage" EXACT [] synonym: "hyoid cartilage pre-cartilage condensation" EXACT [EMAPA:17351] xref: EMAPA:17351 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0014387 ! mesenchyme derived from neural crest relationship: develops_from UBERON:0010254 {source="DOI:10.1111/j.1469-7580.2005.00441.x", source="EHDAA2"} ! 2nd arch mesenchyme from neural crest [Term] id: UBERON:0010355 name: ossification center def: "The first step in ossification of the cartilage is that the cartilage cells, at the point where ossification is commencing and which is termed a ossification center, enlarge and arrange themselves in rows. The matrix in which they are imbedded increases in quantity, so that the cells become further separated from each other. A deposit of calcareous material now takes place in this matrix, between the rows of cells, so that they become separated from each other by longitudinal columns of calcified matrix, presenting a granular and opaque appearance. Here and there the matrix between two cells of the same row also becomes calcified, and transverse bars of calcified substance stretch across from one calcareous column to another. Thus there are longitudinal groups of the cartilage cells enclosed in oblong cavities, the walls of which are formed of calcified matrix which cuts off all nutrition from the cells; the cells, in consequence, atrophy, leaving spaces called the primary areolC&." [Wikipedia:Ossification_center] subset: pheno_slim synonym: "center of ossification" RELATED [Wikipedia:Ossification_center] synonym: "centrum ossificationis" EXACT OMO:0003011 [FMA:TA] synonym: "centrum ossificationis" RELATED OMO:0003011 [Wikipedia:Ossification_center] synonym: "ossification centre" EXACT [FMA:75436] xref: FMA:75436 xref: Wikipedia:Ossification_center is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray79.png" xsd:anyURI property_value: editor_note "currently classified as a zone of a bone organ, but exists prior to bone ossifying" xsd:string [Term] id: UBERON:0010356 name: primary ossification center def: "A primary ossification center is the first area of a bone to start ossifying. It usually appears during prenatal development in the central part of each developing bone. In long bones the primary centers occur in the diaphysis/shaft and in irregular bones the primary centers occur usually in the body of the bone. Most bones have only one primary center (e.g. all long bones) but some irregular bones such as the os coxa (hip) and vertebrae have multiple primary centers." [Wikipedia:Ossification_center#Primary] synonym: "centrum ossificationis primarium" EXACT OMO:0003011 [NominaAnatomica:NA] synonym: "primarium" BROAD [FMA:TA] synonym: "primary ossification centre" EXACT [FMA:75447] xref: FMA:75447 xref: NCIT:C34263 xref: UMLS:C1184750 {source="ncithesaurus:Primary_Ossification_Center"} xref: Wikipedia:Ossification_center#Primary is_a: UBERON:0010355 {source="FMA"} ! ossification center [Term] id: UBERON:0010357 name: secondary ossification center def: "A secondary ossification center is the area of ossification that appears after the primary ossification center has already appeared - most of which appear during the postnatal and adolescent years. Most bones have more than one secondary ossification center. In long bones, the secondary centres appear in the epiphyses." [Wikipedia:Ossification_center#Secondary] synonym: "centrum ossificationis secundarium" EXACT OMO:0003011 [NominaAnatomica:NA] synonym: "secondary ossification centre" EXACT [FMA:75448] synonym: "secundarium" BROAD [FMA:TA] xref: FMA:75448 xref: Wikipedia:Ossification_center#Secondary is_a: UBERON:0010355 {source="FMA"} ! ossification center [Term] id: UBERON:0010358 name: arch of centrum of vertebra def: "An arch-shaped structure of the vertebra that extends dorsally (neural arch) or ventrally (hemal arch) from the vertebral centrum." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "arch of vertebra" NARROW [FMA:11946] synonym: "arcus vertebrae (vertebralis)" NARROW [FMA:11946] synonym: "vertebra arch" NARROW [MA:0001453] synonym: "vertebral arch" NARROW [FMA:11946] xref: EMAPA:36614 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0002412 {source="FMA"} ! vertebra property_value: external_ontology_notes "Note that humans do not have hemal arches, so VA=NA for FMA" xsd:string {external_ontology="FMA"} property_value: homology_notes "(...) certain common components [of vertebral structure] are found in nearly all vertebrate. A representative vertebra has a vertebral arch or neural arch, which extends dorsally around the spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001670", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.270", source="http://bgee.unil.ch/"} [Term] id: UBERON:0010359 name: pharyngeal arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a entire pharyngeal arch associated mesenchyme." [OBOL:automatic] comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme synonym: "arch mesenchyme from neural crest" EXACT [] synonym: "branchial arch mesenchyme from neural crest" EXACT [] synonym: "neural crest derived arch mesenchyme" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0014387 ! mesenchyme derived from neural crest relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme [Term] id: UBERON:0010360 name: pharyngeal arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a entire pharyngeal arch associated mesenchyme." [OBOL:automatic] comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme synonym: "arch mesenchyme from head mesenchyme" EXACT [] synonym: "branchial arch mesenchyme from head mesenchyme" EXACT [] synonym: "head mesenchyme derived arch mesenchyme" EXACT [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme [Term] id: UBERON:0010361 name: synostosis def: "Nonsynovial joint in which the articulating bones are connected by bone. Examples: epiphyseal junction, manubriosternal synostosis." [FMA:7499] synonym: "bony union" EXACT [FMA:7499] synonym: "junctura ossea" EXACT OMO:0003011 [FMA:TA] xref: FMA:7499 xref: MESH:D013580 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:1216008 xref: ZFA:0005610 is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint [Term] id: UBERON:0010362 name: endoskeleton def: "Skeletal subdivision that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000037] synonym: "replacement skeleton" EXACT [VSAO:curator] xref: VSAO:0000037 xref: Wikipedia:Endoskeleton xref: XAO:0004026 is_a: UBERON:0010912 {source="VSAO"} ! subdivision of skeleton property_value: external_definition "An endoskeleton is an internal support structure of an animal, composed of mineralized tissue. Endoskeleton develops within the skin or in the deeper body tissues. The vertebrate is basically an endoskeleton made up of two types of tissues (bone and cartilage). During early embryonic development the endoskeleton is composed of notochord and cartilage. The notochord in most vertebrates is replaced by vertebral column and cartilage is replaced by bone in most adults. In three phyla and one subclass of animals, endoskeletons of various complexity are found: Chordata, Echinodermata, Porifera, and Coleoidea. An endoskeleton may function purely for support (as in the case of sponges), but often serves as an attachment site for muscle and a mechanism for transmitting muscular forces. A true endoskeleton is derived from mesodermal tissue. Such a skeleton is present in echinoderms and chordates. The poriferan 'skeleton' consists of microscopic calcareous or siliceous spicules or a spongin network. The Coleoidae do not have a true endoskeleton in the evolutionary sense; here, a mollusk exoskeleton evolved into several sorts of internal structure, the 'cuttlebone' of cuttlefish being the best-known version. Yet they do have cartilaginous tissue in their body, even if it is not mineralized, especially in the head, where it forms a primitive cranium. The endoskeleton gives shape,support and protection to the body and provides a mean of locomotion.[Wikipedia:Endoskeleton]t" xsd:string {source="Wikipedia:Endoskeleton"} [Term] id: UBERON:0010363 name: endochondral element def: "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000139] synonym: "endochondral replacement element" EXACT [VSAO:0000139] xref: VSAO:0000139 xref: XAO:0004017 xref: ZFA:0005620 is_a: UBERON:0004765 {source="VSAO"} ! skeletal element property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern" xsd:anyURI [Term] id: UBERON:0010364 name: dermal skeleton def: "Skeletal subdivision that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000035] comment: This ontology covers metazoa, so we do not use exoskeleton as primary label, as in VSAO synonym: "dermal skeletal system" RELATED [VSAO:curator] synonym: "dermoskeleton" RELATED [VSAO:curator] synonym: "desmoskeleton" RELATED [VSAO:curator] synonym: "exoskeleton" BROAD INCONSISTENT [VSAO:curator] xref: VSAO:0000035 xref: XAO:0004025 is_a: UBERON:0010912 {source="VSAO"} ! subdivision of skeleton [Term] id: UBERON:0010365 name: odontoid tissue alt_id: UBERON:0001973 def: "Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000063] subset: uberon_slim synonym: "dental tissue" RELATED [VSAO:curator] synonym: "odontogenic tissue" EXACT [VSAO:curator] synonym: "portion of substance of tooth" NARROW [FMA:63001] synonym: "substance of tooth" NARROW [FMA:63001] synonym: "tooth hard tissue" RELATED [VT:0003930] synonym: "tooth substance" NARROW [MA:0002540] synonym: "tooth tissue" RELATED [] xref: EMAPA:35872 xref: FMA:63001 xref: MA:0002540 xref: NCIT:C33794 xref: UMLS:C1519551 {source="ncithesaurus:Tooth_Tissue"} xref: VSAO:0000063 xref: XAO:0004046 xref: ZFA:0005623 is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:0001763 ! odontogenic papilla relationship: part_of UBERON:0010364 ! dermal skeleton property_value: external_ontology_notes "Classified as a portion of organism substance in FMA" xsd:string {external_ontology="FMA"} property_value: taxon_notes "in many vertebrates, odontoid tissue is not restricted to the teeth" xsd:string [Term] id: UBERON:0010366 name: conjunctival vasculature def: "A vasculature that is part of a conjunctiva." [OBOL:automatic] synonym: "conjunctival veins" EXACT [FMA:70887] synonym: "conjunctival veins set" EXACT [FMA:70887] synonym: "set of conjunctival veins" EXACT [FMA:70887] synonym: "venae conjunctivales" EXACT OMO:0003011 [FMA:TA] xref: FMA:70887 is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0010367 name: conjunctival vein def: "A vein that is part of a conjunctiva." [OBOL:automatic] synonym: "conjunctival blood vessel" BROAD [] xref: SCTID:149885003 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0010366 ! conjunctival vasculature [Term] id: UBERON:0010368 name: pulmonary lobule def: "The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in diameter. Each lobule is composed of 4-8 terminal bronchioles and their distal alveolar ducts and sacs. The lobules are separated by fibrous interlobular septa." [ncithesaurus:Pulmonary_Lobule] synonym: "lobulus pulmonis" EXACT OMO:0003011 [FMA:75739, FMA:TA] xref: FMA:75739 xref: NCIT:C33428 is_a: UBERON:0009911 ! lobule relationship: part_of UBERON:8600017 ! bronchopulmonary segment [Term] id: UBERON:0010369 name: secondary pulmonary lobule def: "A unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa." [PMID:3259815] subset: human_reference_atlas synonym: "lobulus pulmonis secondarius" EXACT OMO:0003011 [FMA:7414, FMA:TA] synonym: "respiratory lobule" RELATED [PMID:18403324] xref: FMA:7414 is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0008946 {source="FMA"} ! lung parenchyma relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "a pyramidal mass of lung tissue with sides that are bounded by the incomplete interlobular connective tissue septa and with a base, which is 1-2 cm in diameter, which usually faces the pleural surface of the lung; lobules that occupy a more central position in the lung are not well defined and are considered to consist of three to five pulmonary acini with proximate terminal bronchioles." xsd:string {source="http://medical-dictionary.thefreedictionary.com/secondary+pulmonary+lobule"} [Term] id: UBERON:0010370 name: tibial vein def: "One of the veins of the lower leg; empty into the popliteal vein." [http://www.thefreedictionary.com/tibial+vein] synonym: "vena tibialis" EXACT [] xref: EMAPA:37199 {source="MA:th"} xref: MA:0002243 xref: NCIT:C33787 xref: UMLS:C0447138 {source="ncithesaurus:Tibial_Vein"} is_a: UBERON:0001638 {source="MA"} ! vein is_a: UBERON:0003503 ! leg blood vessel [Term] id: UBERON:0010371 name: ecto-epithelium def: "Epithelium composed of cells that develops from the ectoderm[FMA,modified]." [FMA:69064] synonym: "ectoderm-derived epithelium" EXACT [] xref: FMA:69064 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0010372 name: uncinate process of ethmoid def: "In the ethmoid bone, a curved lamina, the uncinate process, projects downward and backward from this part of the labyrinth; it forms a small part of the medial wall of the maxillary sinus, and articulates with the ethmoidal process of the inferior nasal concha." [Wikipedia:Uncinate_process_of_ethmoid_bone] synonym: "processus uncinatus" RELATED [Wikipedia:Uncinate_process_of_ethmoid_bone] synonym: "processus uncinatus ossis ethmoidalis" RELATED OMO:0003011 [Wikipedia:Uncinate_process_of_ethmoid_bone] synonym: "uncinate process" BROAD INCONSISTENT [] synonym: "uncinate process of the ethmoid" EXACT [Wikipedia:Uncinate_process_of_ethmoid_bone] synonym: "uncinate process of the ethmoid bone" EXACT [Wikipedia:Uncinate_process_of_ethmoid_bone] xref: FMA:57455 xref: SCTID:306373001 xref: Wikipedia:Uncinate_process_of_ethmoid_bone is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001679 ! ethmoid bone property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Processus_uncinatus_ossis_ethmoidalis.PNG" xsd:anyURI [Term] id: UBERON:0010373 name: uncinate process of pancreas def: "In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP]." [Wikipedia:Uncinate_process_of_pancreas] subset: human_reference_atlas synonym: "lesser pancreas" EXACT [FMA:15857] synonym: "processus uncinatus" BROAD OMO:0003011 [] synonym: "processus uncinatus (pancreas)" EXACT [FMA:15857] synonym: "processus uncinatus pancreatis" EXACT OMO:0003011 [Wikipedia:Uncinate_process_of_pancreas] synonym: "uncinate process" BROAD [EMAPA:17509] synonym: "Winslow's pancreas" EXACT [FMA:15857] xref: EMAPA:17509 xref: FMA:15857 xref: NCIT:C62432 xref: SCTID:245383008 xref: UMLS:C0227580 {source="ncithesaurus:Uncinate_Pancreas"} xref: Wikipedia:Uncinate_process_of_pancreas is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004529 {source="FMA"} ! anatomical projection relationship: develops_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud relationship: part_of UBERON:0001069 {source="FMA"} ! head of pancreas relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI [Term] id: UBERON:0010375 name: pancreas dorsal primordium synonym: "dorsal pancreas" RELATED INCONSISTENT [FMA:79793] xref: EHDAA2:0001384 xref: FMA:79793 is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium property_value: editor_note "consider merging with dorsal pancreatic bud. Starts at CS12 in human (EHDAA2, embryology.ch 'bud anlagen')" xsd:string [Term] id: UBERON:0010376 name: pancreas ventral primordium synonym: "ventral pancreas" RELATED INCONSISTENT [FMA:79794] xref: EHDAA2:0001387 xref: FMA:79794 is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium property_value: taxon_notes "Starts at CS14 in human (EHDAA2) or CS13-14 (embryology.ch 'bud anlagen')" xsd:string [Term] id: UBERON:0010377 name: mesenchyme from somatopleure def: "Mesenchyme that develops_from a somatopleure." [OBOL:automatic] xref: EHDAA2:0001120 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenchyme property_value: editor_note "the way this class is defined also includes extraembryonic mesenchyme such as the amniotic mesenchyme; in future this may be restricted to embryonic derivatives" xsd:string [Term] id: UBERON:0010378 name: mesenchyme from splanchnopleure def: "Mesenchyme that develops_from a splanchnopleure." [OBOL:automatic] xref: EHDAA2:0001122 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenchyme [Term] id: UBERON:0010379 name: superior tarsal muscle def: "The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid." [Wikipedia:Superior_tarsal_muscle] subset: human_reference_atlas synonym: "mueller muscle" RELATED [Wikipedia:Superior_tarsal_muscle] synonym: "Mueller's muscle" EXACT [FMA:49058] synonym: "Muller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle] synonym: "musculus tarsalis superior" RELATED OMO:0003011 [Wikipedia:Superior_tarsal_muscle] synonym: "Müller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle] synonym: "the superior tarsal muscle" RELATED [Wikipedia:Superior_tarsal_muscle] xref: FMA:49058 xref: SCTID:244775007 xref: Wikipedia:Superior_tarsal_muscle is_a: UBERON:0003386 ! smooth muscle of eye relationship: part_of UBERON:0004773 ! superior eyelid tarsus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png" xsd:anyURI property_value: editor_note "declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle)" xsd:string [Term] id: UBERON:0010380 name: enteric nerve def: "The neurons that innervate the esophagus, stomach, small and large bowel." [MGI:csmith, MP:0001046] subset: pheno_slim xref: EMAPA:37479 {source="MA:th"} xref: MA:0001145 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0010384 name: lumen of laryngopharynx def: "An anatomical space that is enclosed by a hypopharynx." [OBOL:automatic] synonym: "laryngopharynx lumen" EXACT [FMA:55096] xref: FMA:55096 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001051 {source="FMA"} ! hypopharynx relationship: part_of UBERON:0001731 ! cavity of pharynx [Term] id: UBERON:0010386 name: Peyer's patch follicle def: "A lymphoid follicle that is part of a Peyer's patch." [OBOL:automatic] subset: pheno_slim synonym: "Peyer's patch follicle" EXACT [MA:0000732] xref: MA:0000732 is_a: UBERON:0000444 ! lymphoid follicle relationship: part_of UBERON:0001211 ! Peyer's patch [Term] id: UBERON:0010387 name: Peyer's patch T cell area def: "The Peyer's patch area normally occupied by T lymphocytes." [MP:0002392] subset: pheno_slim xref: EMAPA:37939 {source="MA:th"} is_a: UBERON:0010393 ! T cell domain is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001211 ! Peyer's patch [Term] id: UBERON:0010388 name: proximal segment of rib def: "The segment of the rib that connects to a vertebra[MP]. a small part of the rib composed of the head, neck, tuberculum and a short proximal part of the body[PMID]." [MP:0000152, PMID:15906248] comment: The proximal rib derives from the caudal half of somite[PMID:15906248] subset: pheno_slim synonym: "costal part of rib" RELATED [] synonym: "proximal part of rib" EXACT [PMID:15906248] synonym: "proximal rib" EXACT [MA:0001400] synonym: "proximal rib segment" EXACT [] synonym: "vertebral part of rib" RELATED [] xref: EMAPA:37495 {source="MA:th"} xref: MA:0001400 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002228 {source="MA"} ! rib [Term] id: UBERON:0010389 name: pterygoid bone def: "A bone which corresponds to the inner plate of the pterygoid process of the human skull, but which, in all vertebrates below mammals, is not connected with the posterior nares, but serves to connect the palatine bones with the point of suspension of the lower jaw." [http://www.websters-online-dictionary.org/definitions/Pterygoid+bone] comment: Sources vary as to whether the pterygoid corresponds to the pterygoid processes in general, or the latter/inner plate. subset: pheno_slim synonym: "inner plate of pterygoid process" RELATED [MA:0001471] synonym: "lamina lateralis (processus pterygoideus)" EXACT [FMA:54687, MP:0004452] synonym: "lamina lateralis processi pterygoideus ossis sphenoidalis" EXACT OMO:0003011 [FMA:TA, MP:0004452] synonym: "lateral lamina of pterygoid process" EXACT [FMA:54687, MP:0004452] synonym: "lateral plate of pterygoid process" EXACT [FMA:54687, MP:0004452] synonym: "lateral plate of sphenoid" EXACT [FMA:54687, MP:0004452] synonym: "lateral pterygoid plate" EXACT [] synonym: "pterygoid" BROAD [AAO:0000521] xref: AAO:0000521 xref: EMAPA:36617 xref: FMA:54687 xref: MA:0001471 xref: SCTID:415639001 xref: Wikipedia:Pterygoid_bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone is_a: UBERON:0012071 ! palate bone relationship: part_of UBERON:0004649 {source="MA"} ! sphenoid bone pterygoid process property_value: external_definition "In tetrapods, the pterygoid is a complex, but relatively stable, paired palatal bone with a number of parts. For the following discussion, it may be best to refer to the images of tetrapod palates at, for example Ornithosuchus, Therapsida, or Palatines. In many tetrapods, it is the largest palatal bone and serves as the main structural support. Most typically, the pterygoids meet extensively on the mid-line of the palate and jointly send a process, the palatal ramus, anteriorly, which may cover the parasphenoid more or less completely. Sometimes this term is used to include the main body of the pterygoid as well. More variably, there are one or two anterolateral processes which go by various names, such as ectopterygoid ramus. In many amniotes, the pterygoid develops a strong transverse process or transverse flange which forms a bar running laterally across the palate. The pterygoid also articulates with (where present) the dorsoventral supports for the palate: the epipterygoid (dorsal) and the basipterygoid process of the braincase. Finally, the pterygoid sends a long, robust quadrate ramus with complex curvature down (posteroventrally) to grasp the quadrate and support the jaw articulation. Basally, in fishes, the terminology tends to be a little different. Refer to the image of the Frasnian actinistian Diplocercides. The pterygoid bone of tetrapods is, roughly speaking, derived from the middle, entopterygoid (see also entry at entopterygoid for alternative definitions) portion of the palatoquadrate complex. The entopterygoid is not actually a part of the palatoquadrate. It is a dermal bone which has replaced the middle section of the primitively continuous endochondral bone of the palatoquadrate, the original upper jaw. In tetrapods, the pterygoid advances further, and also replaces the central part of the posterior, pterygoquadrate unit. This becomes the quadrate ramus. The upper part of this unit, the portion involved in the dorsal and basipterygoid articulations between jaw and braincase, is referred to as the metapterygoid. In tetrapods, most of this region is incorporated into the pterygoid as well, with the exception of the ascending process of the palatoquadrate, which becomes the epipterygoid. Since the anterior braincase articulation is lost in tetrapods, the only remaining sections of the palatoquadrate are the epipterygoid and the quadrate (or, in mammals, the incus). Everything else is either lost or is replaced by the pterygoid[Palaeos]" xsd:string {source="http://palaeos.com/vertebrates/glossary/glossaryPte.html"} property_value: external_definition "Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae.[AAO]" xsd:string {date_retrieved="2012-09-17", external_class="AAO:0000521", ontology="AAO", source="AAO"} [Term] id: UBERON:0010390 name: lumen of urethra def: "An organ cavity that is part of a urethra." [OBOL:automatic] synonym: "urethral lumen" EXACT [FMA:19709] xref: FMA:19709 xref: SCTID:279432008 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0010391 name: parametrium def: "The subserous connective tissue of the pelvic floor of the supracervical portion of the uterus. The parametrium extends laterally between the layers of the broad ligament." [ncithesaurus:Parametrium] comment: subserous coat of the uterus laterally between the layers of the broad ligament[MP] - todo - check relationships xref: BTO:0005627 xref: FMA:77061 xref: NCIT:C12320 xref: SCTID:280455005 xref: UMLS:C0227822 {source="ncithesaurus:Parametrium"} xref: Wikipedia:Parametrium is_a: UBERON:0003885 ! mesometrium [Term] id: UBERON:0010392 name: B cell domain is_a: UBERON:0010394 ! lymphocyte domain property_value: editor_note "TODO - check" xsd:string [Term] id: UBERON:0010393 name: T cell domain is_a: UBERON:0010394 ! lymphocyte domain property_value: editor_note "TODO - check" xsd:string [Term] id: UBERON:0010394 name: lymphocyte domain is_a: UBERON:0005057 ! immune organ is_a: UBERON:0010001 ! cell cluster organ relationship: part_of UBERON:0002465 ! lymphoid system property_value: editor_note "TODO - check" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/513" xsd:anyURI [Term] id: UBERON:0010395 name: lymph node primary follicle def: "An unstimulated network of follicular dendritic cells and small resting B cells in the lymph node cortex." [https://github.com/obophenotype/uberon/issues/6, MP:0002345] subset: human_reference_atlas subset: pheno_slim synonym: "primary follicle of lymph node" EXACT [] xref: EMAPA:35530 xref: FMA:312350 xref: MA:0000743 is_a: UBERON:0010422 ! primary nodular lymphoid tissue is_a: UBERON:0010748 ! lymph node follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010396 name: afferent lymphatic vessel def: "Lymphatic vessel that enters the lymph node. The afferent lymph vessels enter at all parts of the periphery of the lymph node, and after branching and forming a dense plexus in the substance of the capsule, open into the lymph sinuses of the cortical part. In doing this they lose all their coats except their endothelial lining, which is continuous with a layer of similar cells lining the lymph paths." [MP:MP] subset: human_reference_atlas subset: pheno_slim synonym: "vasa afferentia lymphoglandula" EXACT [Wikipedia:Afferent_lymphatic_vessels] synonym: "vasa afferentia lymphoglandulae" EXACT [Wikipedia:Afferent_lymphatic_vessels] xref: MA:0000748 xref: Wikipedia:File\:Illu_lymph_node_structure.png is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010397 name: efferent lymphatic vessel def: "Lymphatic vessel that exits the lymph node. The efferent lymphatic vessel commences from the lymph sinuses of the medullary portion of the lymph nodes and leave the lymph nodes either to veins or greater nodes. Efferent lymphatic vessels are also found in the thymus and spleen. This is in contrast to afferent lymphatic vessels, which are found only in lymph nodes." [MP:MP] subset: human_reference_atlas subset: pheno_slim synonym: "efferent lymphatic vessel" RELATED [Wikipedia:Efferent_lymph_vessel] synonym: "efferent lymphatic vessels" RELATED [Wikipedia:Efferent_lymph_vessel] xref: MA:0000749 xref: Wikipedia:Efferent_lymph_vessel is_a: UBERON:0001473 ! lymphatic vessel relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010398 name: spleen marginal sinus def: "The border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood." [MP:MP] subset: pheno_slim synonym: "splenic marginal sinus" EXACT [MP:0002363] xref: EMAPA:37964 {seeAlso="https://github.com/obophenotype/mouse-anatomy-ontology/issues/117", source="MA:th"} xref: MA:0000754 xref: NCIT:C49776 xref: UMLS:C1710157 {source="ncithesaurus:Splenic_Marginal_Sinus"} is_a: UBERON:0001959 ! white pulp of spleen relationship: never_in_taxon NCBITaxon:9606 property_value: editor_note "Note that there is no consensus in the literature about which compartments constitute the white pulp or the ramifications of the microvasculature. In addition, notable differences exist between humans and rodents. In this ontology, the marginal sinus (which may not exist in human) has been included as part of the white pulp. The perifollicular zone, which is present in human and not rodents, may be the functional equivalent of the marginal sinus in rodents." xsd:string {source="MP:0002363"} [Term] id: UBERON:0010399 name: spleen trabecular artery def: "One of the branches of the splenic artery[MP]." [MP:0002354, Wikipedia:Trabecular_arteries] subset: human_reference_atlas subset: pheno_slim synonym: "trabecular artery" RELATED [] xref: MA:0000759 xref: NCIT:C49775 xref: UMLS:C1710159 {source="ncithesaurus:Splenic_Trabecular_Artery"} xref: Wikipedia:Trabecular_arteries is_a: UBERON:0001637 ! artery is_a: UBERON:0003497 ! abdomen blood vessel relationship: part_of UBERON:0001265 ! trabecula of spleen relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "When the splenic artery passes into the trabecula of the spleen and branches, they become known as the trabecular arteries. When these arteries then reach the white pulp, and become covered with Periarteriolar lymphoid sheaths, the name changes again to central arteries (or central arterioles). Branches of the central arteries are given to the red pulp, and these are called penicillar arteries).[Wikipedia]" xsd:string {ontology="Wikipedia", source="Wikipedia:Trabecular_arteries"} [Term] id: UBERON:0010400 name: spleen trabecular vein def: "One of the veins that feed the splenic vein." [MP:0002228, Wikipedia:Trabecular_veins] subset: human_reference_atlas subset: pheno_slim synonym: "trabecular vein" RELATED [Wikipedia:Trabecular_veins] xref: MA:0000760 xref: NCIT:C49779 xref: UMLS:C1710160 {source="ncithesaurus:Splenic_Trabecular_Vein"} xref: Wikipedia:Trabecular_veins is_a: UBERON:0013126 ! vein of abdomen relationship: part_of UBERON:0001265 ! trabecula of spleen relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The trabecular veins are the largest veins inside the spleen. It drains the blood collected in the sinuses of the pulp.[Wikipedia]" xsd:string {ontology="Wikipedia", source="Wikipedia:Trabecular_veins"} [Term] id: UBERON:0010401 name: spleen central arteriole def: "A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein." [MP:MP] subset: human_reference_atlas subset: pheno_slim synonym: "central arteriole" BROAD [] synonym: "follicular arteriole" EXACT [MP:0002361] synonym: "splenic arteriole" BROAD [] synonym: "splenic central arteriole" EXACT [MP:0002361] xref: MA:0000763 is_a: UBERON:0022292 ! splenic arteriole relationship: part_of UBERON:0001959 ! white pulp of spleen relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010402 name: epidermis suprabasal layer def: "Any layer of the epidermis that is superior to the stratum basale." [http://orcid.org/0000-0002-6601-2165, MP:0001233, PMID:10469309] subset: pheno_slim synonym: "suprabasal cell layer of skin" EXACT [] synonym: "suprabasal layer" BROAD [MP:0001233] synonym: "suprabasal layer of epidermis" EXACT [] xref: EMAPA:35315 xref: MA:0000808 is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001003 ! skin epidermis [Term] id: UBERON:0010403 name: brain marginal zone def: "The part of the future brain that is derived from the mantle layer of the neural tube." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "brain marginal zone" BROAD [MA:0000812] xref: DHBA:10508 xref: EMAPA:32680 xref: MA:0000812 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004062 ! neural tube marginal layer relationship: part_of UBERON:0000955 ! brain property_value: external_ontology_notes "not clear if the MA/EMAPA classes refer specifically to the cortical subset. DHBA class incldues non-neocortex derivatives so it belongs here" xsd:string {external_ontology="MA"} [Term] id: UBERON:0010404 name: lateral ventricle subependymal layer def: "A cell layer below the ependyma in the lateral ventricles of the brain. This region contains adult neural stem cells which have the potential to generate new neurons and glial cells via neurogenesis. It is an adult version of the embryonic forebrain germinal zone." [Wikipedia:Subependymal_zone] subset: pheno_slim xref: EMAPA:35489 xref: MA:0000965 xref: Wikipedia:Subependymal_zone is_a: UBERON:0000119 {source="cjm"} ! cell layer relationship: part_of UBERON:0002285 {source="MA"} ! telencephalic ventricle relationship: part_of UBERON:0004922 {source="Wikipedia"} ! postnatal subventricular zone [Term] id: UBERON:0010405 name: spinal cord lateral motor column def: "Column of motor neurons which innervate muscles in the limb; motor neurons in the lateral motor column are further organized into pools, each of which innervates a specific muscle in the limb." [MP:MP] subset: pheno_slim xref: MA:0001129 is_a: UBERON:0003990 ! spinal cord motor column is_a: UBERON:0005374 ! spinal cord lateral column [Term] id: UBERON:0010406 name: cholinergic enteric nerve def: "Nerve fibers that utilize acetylcholine as a neurotransmitter to the intestinal system." [MP:0001049] subset: pheno_slim xref: EMAPA:37480 {source="MA:th"} xref: MA:0001146 is_a: UBERON:0010380 ! enteric nerve [Term] id: UBERON:0010408 name: ocular angle artery def: "The angular artery is the terminal part of the facial artery; it ascends to the medial angle of the eye's orbit, imbedded in the fibers of the angular head of the Quadratus labii superioris, and accompanied by the angular vein." [MP:MP] subset: human_reference_atlas synonym: "angular artery" EXACT [FMA:49583] xref: EMAPA:37673 {source="MA:th"} xref: FMA:49583 xref: MA:0002010 xref: NCIT:C32076 xref: SCTID:145238006 xref: UMLS:C0226116 {source="ncithesaurus:Angular_Artery"} is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010409 name: ocular surface region def: "The integrated unit (of the eye) that consists of the conjunctiva, the corneal surface, and the ocular mucosal adnexa including the lid margins and the meibomian gland openings, the lacrimal glands and the lacrimal drainage system, all which are critical to maintain ocular surface integrity and provide protection from external antigens and pathogenic microorganisms." [MP:0013754] subset: pheno_slim synonym: "eye surface" EXACT [MA:0002486] synonym: "eye surface region" EXACT [] synonym: "ocular surface" EXACT [] xref: EMAPA:35336 xref: MA:0002486 is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0010410 name: inguinal fat pad def: "Encapsulated adipose tissue found in the groin." [MGI:csmith] subset: pheno_slim synonym: "fat depot of inguinal region" EXACT [] synonym: "inguinal fat depot" EXACT [] xref: MA:0002548 is_a: UBERON:0003838 ! abdominal segment connective tissue is_a: UBERON:0003916 ! fat pad relationship: part_of UBERON:0008337 ! inguinal part of abdomen [Term] id: UBERON:0010411 name: retroperitoneal fat pad def: "Encapsulated adipose tissue found on the dorsal side of the peritoneum." [MGI:csmith, MP:0005337] subset: pheno_slim synonym: "retroperitoneal fat depot" EXACT [] xref: MA:0002549 is_a: UBERON:0003427 ! abdominal fat pad relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0010412 name: epididymal fat pad def: "Encapsulated adipose tissue associated with the epididymis." [MGI:csmith, MGI:rbabiuk] subset: pheno_slim synonym: "periepididymal fat pad" EXACT [MP:0009288] xref: EMAPA:35316 xref: MA:0002550 is_a: UBERON:0003916 ! fat pad is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0010413 name: parametrial fat pad def: "Encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament." [MGI:csmith] subset: pheno_slim synonym: "parametrial adipose tissue" RELATED [BTO:0005628] synonym: "parametrial fat" RELATED [BTO:0005628] synonym: "parametrial fat depot" EXACT [MP:0009301] xref: BTO:0005628 xref: MA:0002953 is_a: UBERON:0014394 ! uterine fat pad is_a: UBERON:0015143 ! mesenteric fat pad relationship: part_of UBERON:0010391 ! parametrium [Term] id: UBERON:0010414 name: omental fat pad def: "Encapsulated adipose tissue associated with the fold of peritoneal tissue that extends from the stomach to the posterior abdominal wall after associating with the transverse colon." [MP:MP] subset: pheno_slim synonym: "omental fat depot" EXACT [MP:0010044] xref: MA:0002956 is_a: UBERON:0010411 ! retroperitoneal fat pad relationship: part_of UBERON:0003688 ! omentum [Term] id: UBERON:0010415 name: barrel cortex def: "One of the discrete functional units of the somatosensory cortex that processes tactile information derived from the vibrissae." [MP:0003989] subset: pheno_slim synonym: "barrel cortex" RELATED [NeuroNames:2703] synonym: "barrel field" RELATED [NeuroNames:2703] synonym: "barrel field of the primary somatosensory area" RELATED [NeuroNames:2703] synonym: "barrel field sensory area" RELATED [NeuroNames:2703] synonym: "primary somatosensory area barrel field" RELATED [BAMS:SS-bfd, BAMS:SSp-bfd] synonym: "primary somatosensory area, barrel field" RELATED [ABA:SSp-bfd, NeuroNames:2703] synonym: "primary somatosensory cortex, barrel field" RELATED [NeuroNames:2703] synonym: "whisker barrels" RELATED [NeuroNames:2703] synonym: "whisker sensory area" RELATED [NeuroNames:2703] xref: BAMS:SS-bfd xref: BAMS:SSp-bfd xref: EMAPA:35163 xref: MA:0002712 xref: MBA:329 xref: neuronames:2703 xref: NLX:81 is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: part_of UBERON:0008933 {source="MBA"} ! primary somatosensory cortex property_value: external_definition "The term primary somatosensory area, barrel field refers to one of 6 subdivisions of the primary somesthetic area of the cerebral cortex in the mouse (Dong-2004) and the rat (Swanson-2004). It is defined as dark-staining regions in Nissl and other types of stains of layer four of the somatosensory cortex of rodents where somatosensory inputs from the contralateral side of the body come in from the thalamus, in particular input from the whiskers. Each barrel ranges in size from 100-400 um in diameter. (modified from BrainInfo and Wikipedia)" xsd:string {source="NLX:81"} [Term] id: UBERON:0010416 name: lymph node B cell domain def: "A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers." [MP:MP] subset: pheno_slim synonym: "lymph node B cell dependent cortex" EXACT [MP:0002344] synonym: "lymph node B-cell domain" EXACT [MP:0002344] synonym: "nodular lymph node cortex" EXACT [MP:0002344] xref: MA:0002851 is_a: UBERON:0010392 ! B cell domain relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node [Term] id: UBERON:0010417 name: lymph node T cell domain def: "The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells." [MP:0002347] subset: pheno_slim synonym: "lymph node deep cortex" EXACT [MP:0002347] synonym: "lymph node T cell dependent paracortex" EXACT [MP:0002347] synonym: "lymph node T zone" EXACT [] synonym: "lymph node T-cell domain" EXACT [MP:0002347] synonym: "T cell zone of lymph node" EXACT [] synonym: "T zone of lymph node" EXACT [] xref: EMAPA:37663 {source="MA:th"} xref: MA:0002852 xref: SCTID:326870003 is_a: UBERON:0010393 ! T cell domain relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010418 name: urethral opening def: "An orifice that is part of a lower urinary tract." [OBOL:automatic] subset: pheno_slim synonym: "urethral orifice" EXACT [OBOL:automatic] xref: EMAPA:35965 xref: MA:0002867 is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: UBERON:0010419 name: vibrissa follicle def: "One of the tubular invaginations of the epidermis enclosing the hair roots and from which grow the vibrissae located on the muzzle and face of many species." [MGI:llw2, MP:0010234] subset: pheno_slim synonym: "follicle of sinus hair" EXACT [EMAPA:26759] synonym: "follicle of vibrissa" EXACT [EMAPA:26720] synonym: "vibrissa follicle" RELATED [MP:0010234] synonym: "vibrissal follicle" EXACT [BTO:0003489] xref: BTO:0003489 xref: EMAPA:26720 xref: MA:0002910 is_a: UBERON:0002073 ! hair follicle relationship: part_of UBERON:0011933 ! vibrissa unit [Term] id: UBERON:0010420 name: lymph node germinal center mantle zone def: "A part of the secondary follicle in which naive B cells reside along with some helper T cells, macrophages and follicular dendritic cells; these are displaced by the expanding germinal centre and form a 'mantle' around it." [http://orcid.org/0000-0003-4183-8865, https://github.com/obophenotype/uberon/issues/7, https://orcid.org/0000-0001-9990-8331, MP:MP, PMID:25656706] subset: human_reference_atlas subset: pheno_slim synonym: "germinal center mantle zone" BROAD [] synonym: "lymph node B cell corona" EXACT [CL:tm] synonym: "lymph node dark zone" RELATED [CL:tm] synonym: "lymph node follicular corona" EXACT [] synonym: "lymph node follicular mantle" EXACT [MA:0002990] synonym: "lymph node inactive zone" EXACT [CL:tm] synonym: "lymph node peripheral zone" EXACT [CL:tm] synonym: "mantle zone of germinal center" BROAD [] synonym: "mantle zone of lymph node germinal center" EXACT [] xref: EMAPA:37661 {source="MA:th"} xref: MA:0002990 is_a: UBERON:0010755 ! secondary follicle corona relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010421 name: spleen B cell corona def: "The area of the (spleen) secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes." [CL:tm, https://github.com/obophenotype/uberon/issues/6, PMID:17495967] subset: human_reference_atlas subset: pheno_slim synonym: "B cell domain of the spleen" BROAD [MP:0002360] synonym: "B lymphocyte domain of the spleen" BROAD [] synonym: "follicle mantle" EXACT [MP:0002360] synonym: "lymphocytic corona" BROAD [CL:tm, MP:0002360] synonym: "spleen B cell corona" EXACT [MP:0002360] synonym: "spleen B-cell corona" EXACT [MP:0002360] synonym: "spleen lymphocytic corona" EXACT [CL:tm, MP:0002360] synonym: "spleen mantle zone" RELATED [CL:tm, MP:0002360] synonym: "splenic B cell corona" EXACT [MP:0002360] synonym: "splenic corona" BROAD [CL:tm] xref: EMAPA:37962 {source="MA:th"} is_a: UBERON:0010755 ! secondary follicle corona relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010422 name: primary nodular lymphoid tissue def: "A lymphoid follicle containing naive B cells." [CL:tm] synonym: "primary follicle" RELATED [] synonym: "primary lymphoid follicle" EXACT [] synonym: "primary lymphoid nodule" EXACT [FMA:55223] xref: FMA:55223 is_a: UBERON:0000444 {source="FMA"} ! lymphoid follicle property_value: location_notes "The cortex of lymph nodes, the white pulp of spleen, and mucosa associated lymphoid tissue all have these primary follicles" xsd:string [Term] id: UBERON:0010423 name: primary lymphoid nodule of tonsil def: "A primary nodular lymphoid tissue that is part of a tonsil." [OBOL:automatic] subset: human_reference_atlas synonym: "lymphoid nodule of tonsil" RELATED [FMA:86018] xref: FMA:86018 is_a: UBERON:0010422 {source="FMA"} ! primary nodular lymphoid tissue relationship: part_of UBERON:0002372 ! tonsil relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010424 name: distal segment of rib comment: The distal rib derives from both somite halves[PMID:15906248] synonym: "distal part of rib" EXACT [PMID:15906248] synonym: "distal rib" EXACT [MA:0001397] synonym: "distal rib segment" EXACT [] synonym: "sternal rib" NARROW [] synonym: "vertical segment of rib" NARROW [] xref: EMAPA:37492 {source="MA:th"} xref: MA:0001397 xref: MA:0001418 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002228 {source="MA"} ! rib [Term] id: UBERON:0010425 name: internal naris def: "A naris that is located inside the nasal cavity and connects to the pharynx." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "choana" EXACT [] synonym: "choanae" RELATED OMO:0003004 [] synonym: "internal choana" EXACT [] synonym: "internal nares" RELATED OMO:0003004 [] synonym: "internal nostril" RELATED [] xref: NCIT:C32856 is_a: UBERON:0000003 ! naris relationship: fma_set_term FMA:76585 property_value: has_relational_adjective "choanal" xsd:string property_value: taxon_notes "In humans the only internal naris is the posterior nasal aperture, which connects to the nasopharynx" xsd:string [Term] id: UBERON:0010426 name: oropharyngeal choana def: "Opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [https://orcid.org/0000-0002-6601-2165] synonym: "apertura nasalis interna" RELATED [AAO:0000025] synonym: "choana of oropharynx" EXACT [] synonym: "cleft palate" RELATED [] synonym: "oropharyngeal naris" EXACT [] synonym: "palatal choana" EXACT [] synonym: "palatal cleft" RELATED [] is_a: UBERON:0010425 ! internal naris relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0001716 ! secondary palate property_value: axiom_lost_from_external_ontology "relationship loss: subclass nasal opening (AAO:0000316)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000025", ontology="AAO"} property_value: editor_note "todo - check AAO:0000025 apertura nasalis interna" xsd:string property_value: external_definition "Hole on the nasal capsule that connects the nasal and buccal cavites.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000025", ontology="AAO", source="AAO:LAP"} property_value: function_notes "has function in pressure equalization in birds that fly to high altitudes" xsd:string [Term] id: UBERON:0010427 name: ciliary processes def: "The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens." [Wikipedia:Ciliary_processes] synonym: "ciliary process" RELATED [Wikipedia:Ciliary_processes] synonym: "ciliary processes" EXACT [FMA:76551] synonym: "ciliary processes set" EXACT [FMA:76551] synonym: "processus ciliares" EXACT OMO:0003011 [FMA:TA] synonym: "processus ciliares" RELATED OMO:0003011 [Wikipedia:Ciliary_processes] synonym: "set of ciliary processes" EXACT [FMA:76551] xref: FMA:76551 xref: SCTID:280860001 xref: Wikipedia:Ciliary_processes is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001775 ! ciliary body property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.3/assets/3d-vh-f-eye-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.3/assets/3d-vh-f-eye-r.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.3/assets/3d-vh-m-eye-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.3/assets/3d-vh-m-eye-r.glb" xsd:anyURI [Term] id: UBERON:0010428 name: flat bone def: "A bone that is shaped as a broad flat plate and composed of two thin layers of compact tissue enclosing between them a variable quantity of cancellous tissue, which is the location of red bone marrow." [Wikipedia:Flat_bone] comment: Examples: cranium, the ilium, sternum, rib cage, the sacrum and the scapula; the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs synonym: "os planum" RELATED OMO:0003011 [Wikipedia:Flat_bone] xref: FMA:7476 xref: galen:FlatBone xref: NCIT:C32616 xref: SCTID:332907008 xref: UMLS:C0222649 {source="ncithesaurus:Flat_Bone"} xref: Wikipedia:Flat_bone is_a: UBERON:0001474 {source="FMA"} ! bone element property_value: function_notes "Flat bones are those bones which are found where the principal requirement is either extensive protection or the provision of broad surfaces for muscular attachment" xsd:string property_value: taxon_notes "In an adult mammal, most red blood cells are formed in flat bones" xsd:string [Term] id: UBERON:0010437 name: zygomaticus muscle def: "One of: zygomaticus major, zygomaticus minor." [https://orcid.org/0000-0002-6601-2165] comment: origin: posterior braincase subset: grouping_class synonym: "m. levator nasii" RELATED [] synonym: "m. zygomaticus" EXACT [] synonym: "zygomaticus" EXACT [MA:0002404] xref: EMAPA:37703 {source="MA:th"} xref: MA:0002404 xref: NCIT:C53182 xref: UMLS:C1710708 {source="ncithesaurus:Zygomaticus"} is_a: UBERON:0001577 {source="MFMO-abduced"} ! facial muscle [Term] id: UBERON:0010467 name: teres muscle synonym: "teres" EXACT [] xref: EMAPA:36155 xref: NCIT:C33752 xref: SCTID:277440006 xref: UMLS:C1515272 {source="ncithesaurus:Teres_Muscle"} is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0034908 ! scapular muscle [Term] id: UBERON:0010496 name: teres minor muscle def: "A narrow, elongated muscle of the rotator cuff." [Wikipedia:Teres_minor_muscle] comment: Dorsal group[Kardong] subset: human_reference_atlas subset: pheno_slim synonym: "musculus teres minor" RELATED OMO:0003011 [Wikipedia:Teres_minor_muscle] synonym: "teres minor" EXACT [FMA:32550] xref: EMAPA:36156 xref: FMA:32550 xref: NCIT:C33751 xref: SCTID:277445001 xref: UMLS:C0224231 {source="ncithesaurus:Teres_Minor_Muscle"} xref: Wikipedia:Teres_minor_muscle is_a: UBERON:0010467 ! teres muscle is_a: UBERON:0010891 ! pectoral complex muscle relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c4/Gray810.png" xsd:anyURI [Term] id: UBERON:0010498 name: pseudostratified columnar epithelium def: "A simple columnar epithelium that looks stratified but is not, because its cells are arranged with their nuclei at different levels." [http://medical-dictionary.thefreedictionary.com/pseudostratified+epithelium, Wikipedia:Pseudostratified_columnar_epithelium] xref: FMA:45572 xref: NCIT:C33419 xref: NCIT:C49316 xref: UMLS:C0836138 {source="ncithesaurus:Pseudostratified_Columnar_Epithelium"} xref: UMLS:C1514590 {source="ncithesaurus:Pseudostratified_Epithelium"} xref: Wikipedia:Pseudostratified_columnar_epithelium is_a: UBERON:0000485 {source="FMA"} ! simple columnar epithelium property_value: external_ontology_notes "glandular in NCIT; we consider the two NCIT terms synonymous" xsd:string {external_ontology="NCIT"} property_value: function_notes "Pseudostratified epithelia function in secretion or absorption. If a specimen looks stratified but has cilia, then it is a pseudostratified ciliated epithelium, since stratified epithelia do not have cilia." xsd:string [Term] id: UBERON:0010499 name: pseudostratified ciliated columnar epithelium def: "Epithelium composed of a single layer of cells, appearing as layered because the column-shaped cells vary in height so the nuclei are at different levels. The basal portions of all the cells are in contact with the basement membrane. It lines the respiratory system and the male reproductive tract. The cilia in the respiratory tract are motile, while the stereocilia in the male reproductive tract are immobile." [NCIT:NCIT] synonym: "epithelium pseudostratificatum columnare ciliatum (trachea et bronchi)" EXACT [FMA:13146] xref: FMA:13146 xref: NCIT:C13181 xref: UMLS:C0506992 {source="ncithesaurus:Pseudostratified_Columnar_Ciliated_Epithelium"} is_a: UBERON:0007592 ! ciliated columnar epithelium is_a: UBERON:0010498 ! pseudostratified columnar epithelium [Term] id: UBERON:0010501 name: pseudostratified smooth columnar epithelium synonym: "non-ciliated pseudostratified columnar epithelia" RELATED [] xref: FMA:72059 is_a: UBERON:0010498 {source="FMA"} ! pseudostratified columnar epithelium [Term] id: UBERON:0010504 name: obsolete round ligament is_obsolete: true consider: NCIT:C12319 consider: UBERON:0006588 consider: UBERON:0006589 [Term] id: UBERON:0010505 name: periosteal dura mater def: "The outermost of the two layers of the cranial dura mater which normally always adheres to the periosteum of the bones of the cranial vault." [https://orcid.org/0000-0002-6601-2165] synonym: "endosteal layer of dura mater" RELATED [FMA:231547] synonym: "outer layer of dura mater" EXACT [FMA:231547] synonym: "outer periosteal layer of dura mater" EXACT [] synonym: "periosteal dura" EXACT [FMA:231547] synonym: "periosteal layer of dura mater" EXACT [FMA:231547] xref: FMA:231547 xref: NCIT:C33306 xref: UMLS:C1518991 {source="ncithesaurus:Periosteal_Layer_of_the_Dura_Mater"} is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater relationship: mutually_spatially_disjoint_with UBERON:0010506 ! meningeal dura mater relationship: part_of UBERON:0002092 ! brain dura mater [Term] id: UBERON:0010506 name: meningeal dura mater def: "The inner layer of the dura mater surrounding the brain. It is mostly fused with the outer layer, the endocranium that is adherent to the inner aspect of the cranial bones. These two layers form the dura mater. The latter covers and protects the brain and the spinal cord." [ncithesaurus:Meningeal_Layer_of_the_Dura_Mater] synonym: "inner layer of dura mater" EXACT [FMA:231549] synonym: "meningeal dura" EXACT [FMA:231549] synonym: "meningeal layer of dura mater" EXACT [FMA:231549] xref: FMA:231549 xref: NCIT:C33093 xref: UMLS:C1513121 {source="ncithesaurus:Meningeal_Layer_of_the_Dura_Mater"} is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater property_value: editor_note "not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area" xsd:string [Term] id: UBERON:0010507 name: layer of dura mater def: "The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space." [http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater] xref: FMA:231545 is_a: UBERON:0004923 {source="FMA"} ! organ component layer relationship: part_of UBERON:0002363 {source="FMA"} ! dura mater property_value: editor_note "not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area" xsd:string [Term] id: UBERON:0010509 name: strand of pelage hair def: "A strand of hair that is part of a coat of hair." [OBOL:automatic] synonym: "pelage hair" EXACT [MA:0001897] xref: EMAPA:36485 xref: MA:0001897 is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0010166 ! coat of hair [Term] id: UBERON:0010510 name: strand of auchene hair def: "A truncal hair that has a single constriction and bend about midway along the hair shaft, and contains two or more air cells in the medulla." [MP:0000405] subset: pheno_slim synonym: "auchene hair" EXACT [MA:0001893] xref: EMAPA:36527 xref: MA:0001893 is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair [Term] id: UBERON:0010511 name: strand of awl hair def: "A truncal hairs that is straight, but shorter than a guard hair, and contain two or more air cells in the medulla." [MP:0000400, Wikipedia:Awn_hair] subset: pheno_slim synonym: "awl hair" EXACT [MA:0001894] xref: EMAPA:36639 xref: MA:0001894 xref: Wikipedia:Awn_hair is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair [Term] id: UBERON:0010512 name: strand of guard hair def: "A long, straight truncal hair that contains two air cells in the medulla[MP]. A strand of hair from the top layer consisting of longer, often coarser, straight shafts of hair that stick out through the underfur. This is usually the visible layer for most mammals and contains most of the pigmentation." [MP:0006365, Wikipedia:Guard_hair] subset: pheno_slim synonym: "guard hair" EXACT [MA:0001896] synonym: "guardhair" EXACT [] synonym: "monotrich hair" EXACT [DOI:10.1016/j.cub.2008.12.005] xref: EMAPA:36528 xref: MA:0001896 xref: Wikipedia:Guard_hair is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair property_value: function_notes "It protects the underfur from outside factors, such as rain, and is thus often water-repellent" xsd:string [Term] id: UBERON:0010513 name: strand of zigzag hair def: "A truncal hair that has two or more sharp bends with diameter constrictions at the bends, and contain one air cell in the medulla." [MP:0006366] subset: pheno_slim synonym: "zigzag hair" EXACT [MA:0001898] xref: EMAPA:36640 xref: MA:0001898 is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair is_a: UBERON:0016447 ! hair of trunk [Term] id: UBERON:0010514 name: strand of duvet hair def: "A strand of hair from the fine underhair of the coat." [MP:0000408] subset: pheno_slim synonym: "duvet hair" EXACT [MA:0001895] xref: MA:0001895 is_a: UBERON:0001037 {source="MA"} ! strand of hair property_value: external_ontology_notes "not a pelage hair in MA, but is in MP" xsd:string {external_ontology="MA"} [Term] id: UBERON:0010515 name: brille def: "A layer of transparent, immovable disc-shaped skin or scale covering the eyes of some animals for protection, especially in animals without eyelids. The brille has evolved from a fusion of the upper and lower eyelids." [Wikipedia:Brille] comment: there are transitional stages between total lid loss and full brille formation (Bellairs & Boyd, 1947). synonym: "eye cap" RELATED [] synonym: "ocular scale" RELATED [] xref: Wikipedia:Brille is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0000019 ! camera-type eye property_value: taxon_notes "In snakes, there is no eyelid and the brille is clear and cannot be distinguished except when the animal is becoming ready for ecdysis. At that time, it becomes cloudy and is visible as a cover over the eye. When the snake moults, the brille is also shed as part of its skin. The Brilles protect their eyes from dust and dirt and gives them a 'glassy-eyed' blank appearance Snakes, flap-footed lizards, night lizards, and some skinks have brilles. All geckos except those in the subfamily Eublepharinae (eyelid geckos) possess brilles. Fish also have transparent eyelids called adipose eyelids." xsd:string [Term] id: UBERON:0010516 name: clasper def: "A male anatomical structure found some groups of animals, used in mating. Male cartilaginous fish have claspers formed from the posterior portion of their pelvic fin which serve as intromittent organs used to channel semen into the female's cloaca during mating. The act of mating in some fish including sharks usually includes one of the claspers raised to allow water into the siphon through a specific orifice. The clasper is then inserted into the vagina, where it opens like an umbrella to anchor its position. The siphon then begins to contract expelling water and sperm. Male chimaeras have cephalic claspers on their heads, which are thought to aid in holding the female during mating." [Wikipedia:clasper] xref: Wikipedia:clasper is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ property_value: taxon_notes "the term is also used for insect claspers, but we reserve it for the elasmobranchii structure" xsd:string [Term] id: UBERON:0010517 name: cephalic clasper def: "A mace-like spiny-headed rod found on the mid-dorsal surface of heads of male Holocephali. Thought to aid in holding the female during copulation." [http://fishbase.org/glossary/Glossary.php?q=tenaculum, http://www.fishbase.org/glossary/Glossary.php?q=cephalic+clasper, Wikipedia:Chimaera#Description_and_tastes] synonym: "anterior tenaculum" RELATED [] synonym: "head clasper" RELATED [http://www.fishbase.org/glossary/Glossary.php?q=head+clasper] synonym: "tenaculum" RELATED [] xref: Wikipedia:Chimaera#Description_and_tastes is_a: UBERON:0010516 ! clasper relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0010518 name: pelvic fin clasper def: "The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion." [http://fishbase.org/Glossary/Glossary.php?q=clasper] synonym: "clasper" RELATED [] synonym: "myxopterygium" EXACT [http://fishbase.org/Glossary/Glossary.php?q=clasper] is_a: UBERON:0010516 ! clasper relationship: part_of UBERON:0000152 ! pelvic fin [Term] id: UBERON:0010519 name: tail electric organ def: "An electric organ that is part of a tail." [OBOL:automatic] synonym: "electric organ of tail" EXACT [] xref: BTO:0000376 is_a: UBERON:0006869 ! electric organ relationship: part_of UBERON:0002415 {source="BTO"} ! tail [Term] id: UBERON:0010520 name: head electric organ def: "An electric organ that is part of a head." [OBOL:automatic] is_a: UBERON:0006869 ! electric organ relationship: part_of UBERON:0000033 ! head property_value: taxon_notes "electric ray" xsd:string [Term] id: UBERON:0010521 name: electroreceptor organ def: "An organ that is capable of detecting electrical stimulus." [http://orcid.org/0000-0002-6601-2165] synonym: "electric sense organ" EXACT [] synonym: "electroreception organ" EXACT [] is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0010522 name: replacement element def: "Skeletal element that forms as a replacement or substitution of another element or tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000135] xref: VSAO:0000135 xref: XAO:0004016 xref: ZFA:0005624 is_a: UBERON:0004765 {source="VSAO"} ! skeletal element relationship: part_of UBERON:0010362 {source="cjm"} ! endoskeleton [Term] id: UBERON:0010523 name: microcirculatory vessel def: "A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses." [http://orcid.org/0000-0002-6601-2165, MESH:A07.231.432, ZFA:0005251] synonym: "microcirculatory vessels" RELATED OMO:0003004 [TAO:0005251] xref: MESH:D055806 xref: TAO:0005251 xref: ZFA:0005251 is_a: UBERON:0000055 ! vessel relationship: part_of UBERON:0002049 {source="ZFA"} ! vasculature [Term] id: UBERON:0010524 name: fibularis tertius def: "A muscle located in the lower limb that arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis and inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint." [DOI:10.3389/fevo.2018.00053, Wikipedia:Peroneus_tertius_muscle] subset: pheno_slim synonym: "fibularis tertius" RELATED [Wikipedia:Peroneus_tertius] synonym: "fibularis tertius muscle" RELATED [Wikipedia:Peroneus_tertius] synonym: "musculus peroneus tertius" EXACT OMO:0003011 [FMA:TA] synonym: "peronaeus tertius" RELATED [Wikipedia:Peroneus_tertius] synonym: "peroneus digit V" RELATED [EMAPA:36261] synonym: "peroneus digiti minimi" RELATED [EMAPA:36261] synonym: "peroneus digiti quinti" EXACT [EMAPA:36261] synonym: "peroneus tertius" EXACT [FMA:22538, Wikipedia:Peroneus_tertius] synonym: "peroneus tertius muscle" EXACT [Wikipedia:Peroneus_tertius] xref: EMAPA:36261 xref: FMA:22538 xref: SCTID:181701000 xref: Wikipedia:Peroneus_tertius_muscle is_a: UBERON:0009132 ! peroneus property_value: taxon_notes "The fibularis tertius, commonly associated with human bipedalism (e.g., Lewis, 1989, see above), was present in almost half (3/7) of the dissected bonobos (in the fetus, infant Etje, and adolescent Jasiri), going to metatarsal V-exactly as it normally does in humans-in the fetus and infant, and to the proximal phalanx of digit 5 in the adolescent [DOI:10.3389/fevo.2018.00053]" xsd:string [Term] id: UBERON:0010526 name: fibularis brevis def: "The peroneus brevis muscle (or fibularis brevis) lies under cover of the peroneus longus, and is a shorter and smaller muscle." [Wikipedia:Peroneus_brevis] subset: pheno_slim synonym: "fibularis brevis" RELATED [Wikipedia:Peroneus_brevis] synonym: "musculus peroneus brevis" EXACT OMO:0003011 [FMA:TA] synonym: "peronaeus brevis" EXACT [Wikipedia:Peroneus_brevis] synonym: "peroneus brevis" EXACT [FMA:22540] synonym: "peroneus brevis muscle" EXACT [Wikipedia:Peroneus_brevis] synonym: "peronius brevis" RELATED [Wikipedia:Peroneus_brevis] xref: EMAPA:36252 xref: FMA:22540 xref: SCTID:181704008 xref: Wikipedia:Peroneus_brevis is_a: UBERON:0009132 ! peroneus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray357.png" xsd:anyURI [Term] id: UBERON:0010527 name: cavity of bone organ def: "An organ cavity that surrounded_by a bone." [OBOL:automatic] synonym: "bone organ cavity" EXACT [FMA:24021] xref: FMA:24021 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001474 ! bone element [Term] id: UBERON:0010528 name: pneumatic cavity of bone synonym: "air space of bone" EXACT [FMA:24028] xref: FMA:24028 is_a: UBERON:0010527 {source="FMA"} ! cavity of bone organ relationship: part_of UBERON:0008193 ! pneumatized bone [Term] id: UBERON:0010531 name: metanephros induced blastemal cells synonym: "cap mesenchyme of metanephros of urinary system" RELATED [EMAPA:17645] synonym: "induced blastemal cells" EXACT [VHOG:0001241] synonym: "nephrogenic interstitium" RELATED [] synonym: "nephrogenic interstitium of nephrogenic zone" EXACT [EMAPA:17953] synonym: "peripheral blastema" RELATED [EMAPA:17953] xref: EHDAA2:0001143 xref: EHDAA:7007 xref: EHDAA:8105 xref: EMAPA:17953 xref: MA:0002998 xref: VHOG:0001241 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003220 {source="EHDAA2"} ! metanephric mesenchyme relationship: part_of UBERON:0009871 ! nephrogenic zone property_value: external_ontology_notes "different versions of EMAPA have different labels for the same classes. In vHOG this is part of metanephros cortex but this leads to a cycle in basic." xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0010532 name: primitive nephron def: "An epithelial tube that is fated to become a nephron." [http://orcid.org/0000-0002-6601-2165] synonym: "developing nephron" BROAD [] synonym: "future nephron" EXACT [] synonym: "presumptive nephron" EXACT [] synonym: "primitive nephron" BROAD [] is_a: UBERON:0003914 {source="EHDAA2-inferred"} ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube relationship: develops_from UBERON:0004209 {source="EHDAA2"} ! renal vesicle property_value: external_ontology_notes "EHDAA2 treats this as already having a tubular structure, but in the ZFA representation this is a cluster of cells" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0010533 name: metanephros cortex def: "The metanephric cortex is the outer region of the metanephros[GO]." [GO:0072214] xref: VHOG:0000714 is_a: UBERON:0001225 ! cortex of kidney is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0005113 ! metanephric cortex mesenchyme relationship: part_of UBERON:0000081 {source="VHOG"} ! metanephros [Term] id: UBERON:0010534 name: primitive mesonephric nephron def: "Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons." [GOC:cvs, https://orcid.org/0000-0002-2244-7917, ZFA:0005584] synonym: "developing mesonephric nephron" EXACT [ZFA:0005584] synonym: "primitive mesonephric nephron" EXACT [] xref: ZFA:0005584 is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0010532 ! primitive nephron [Term] id: UBERON:0010535 name: primitive metanephric nephron def: "A primitive nephron that is part of a metanephros." [OBOL:automatic] synonym: "developing metanephric nephron" EXACT [] synonym: "primitive metanephric nephron" EXACT [] synonym: "primitive nephron" BROAD [EHDAA2:0001516] xref: EHDAA2:0001516 is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0010532 ! primitive nephron relationship: part_of UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mesenchyme [Term] id: UBERON:0010536 name: nephron progenitor is_a: UBERON:0000479 {source="ZFA"} ! tissue relationship: part_of UBERON:0003918 {source="cjm"} ! kidney mesenchyme [Term] id: UBERON:0010537 name: mesonephric nephron progenitor def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFA:0005587] xref: ZFA:0005587 is_a: UBERON:0010536 ! nephron progenitor relationship: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0010538 name: paired limb/fin segment def: "An appendage segment that is part of a limb/fin." [OBOL:automatic] subset: homology_grouping synonym: "limb/fin segment" EXACT [] is_a: UBERON:0010758 ! subdivision of organism along appendicular axis relationship: part_of UBERON:0004708 ! paired limb/fin [Term] id: UBERON:0010540 name: tarsus pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a tarsal bone." [OBOL:automatic] xref: EHDAA2:0001978 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region relationship: part_of UBERON:0003328 ! mesenchyme of footplate [Term] id: UBERON:0010541 name: tarsus cartilage element def: "A cartilaginous condensation that has the potential to develop into a tarsal bone." [OBOL:automatic] xref: EHDAA2:0001977 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010540 {source="EHDAA2"} ! tarsus pre-cartilage condensation relationship: part_of UBERON:0003328 {source="EHDAA2"} ! mesenchyme of footplate [Term] id: UBERON:0010543 name: acropodial skeleton def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the autopodium - i.e. the bones of the digits or their cartilaginous precursors[VSAO,modified]." [https://orcid.org/0000-0002-6601-2165, VSAO:0005028, VSAO:NI] synonym: "acropodial skeleton" EXACT [] synonym: "acropodium" RELATED [VSAO:0005028, VSAO:NI] synonym: "acropodium skeleton" EXACT [] synonym: "digital skeleton" RELATED [] synonym: "digits skeleton" RELATED [] synonym: "phalangeal skeleton" RELATED [] synonym: "set of phalanges" EXACT [FMA:231315] synonym: "skeletal parts of acropodial region" EXACT [] synonym: "skeletal parts of acropodium" RELATED [] synonym: "skeleton of digits" RELATED [] xref: FMA:231315 xref: VSAO:0005028 is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0012150 {source="PHENOSCAPE:ni"} ! skeleton of digitopodium relationship: part_of UBERON:0012354 ! acropodium region [Term] id: UBERON:0010544 name: metacarpus skeleton def: "The metacarpus is the intermediate part of the manus skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpus] synonym: "anterior metapodial skeleton" EXACT [] synonym: "anterior metapodium" RELATED [VSAO:0005026, VSAO:NI] synonym: "fore metapodial skeleton" RELATED [] synonym: "fore metapodium" RELATED [AAO:0000946, http://en.wiktionary.org/wiki/metapodial, MA:th] synonym: "metacarpal bones" EXACT [FMA:71336] synonym: "metacarpal skeleton" EXACT [] synonym: "metacarpalia" RELATED OMO:0003011 [Wikipedia:Metacarpus] synonym: "metacarpals [I-V]" EXACT [FMA:71336] synonym: "metacarpals set" EXACT [FMA:71336] synonym: "ossa metacarpalia [I-V]" EXACT OMO:0003011 [FMA:71336, FMA:TA] synonym: "ossa metacarpi [I-V]" EXACT OMO:0003011 [FMA:71336, FMA:TA] synonym: "set of metacarpal bones" EXACT [FMA:71336] synonym: "set of metacarpals" EXACT [FMA:71336] synonym: "set of metacarpals [I-V]" EXACT [FMA:71336] synonym: "skeleton of metacarpus" EXACT [] xref: AAO:0000946 xref: FMA:71336 xref: MESH:D050279 xref: VSAO:0005026 xref: Wikipedia:Metacarpus xref: XAO:0003208 is_a: UBERON:0010546 ! metapodial skeleton is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: develops_from UBERON:0010699 {notes="many to one"} ! manual digit metacarpus cartilage element property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg" xsd:anyURI property_value: external_definition "Segment of the forearm corresponding to the metacarpus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000946", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0010545 name: metatarsus skeleton def: "Limb segment that consists of the long bones of the pes. The metatarsals are analogous to the metacarpal bones of the manus." [Wikipedia:Metatarsus] synonym: "metatarsal bones set" EXACT [FMA:71340] synonym: "metatarsal skeleton" EXACT [] synonym: "metatarsalia" RELATED [] synonym: "metatarsals [I-V]" EXACT [FMA:71340] synonym: "ossa metatarsalia" RELATED OMO:0003011 [Wikipedia:Metatarsus] synonym: "ossa metatarsalia [I-V]" EXACT OMO:0003011 [FMA:71340, FMA:TA] synonym: "ossa metatarsi[I-V]" EXACT OMO:0003011 [FMA:71340, FMA:TA] synonym: "posterior metapodial skeleton" EXACT [] synonym: "posterior metapodium" RELATED [VSAO:0005027, VSAO:NI] synonym: "set of metatarsal bones" EXACT [FMA:71340] synonym: "set of metatarsals [I-V]" EXACT [FMA:71340] synonym: "skeleton of metatarsus" EXACT [] xref: AAO:0000221 xref: FMA:71340 xref: MESH:D008684 xref: VSAO:0005027 xref: Wikipedia:Metatarsus xref: XAO:0003212 is_a: UBERON:0010546 ! metapodial skeleton is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: develops_from UBERON:0010697 {notes="many to one"} ! pedal digit metatarsal cartilage element property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png" xsd:anyURI property_value: external_definition "Segment of the leg corresponding to the metatarsus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000221", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0010546 name: metapodial skeleton def: "Subdivision of skeleton that corresponds to metapodium region, between acropodial skeleton and mesopdoial skeleton." [https://orcid.org/0000-0002-6601-2165] synonym: "metacarpal/metatarsal skeleton" EXACT [] synonym: "metapodial skeleton" EXACT [VSAO:0005025] synonym: "metapodium" RELATED [VSAO:0005025, VSAO:NI] synonym: "metapodium skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "skeletal parts of metapodium" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "skeleton of metapodium" EXACT [] xref: VSAO:0005025 is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0009877 ! metapodium region relationship: part_of UBERON:0012150 {source="PHENOSCAPE:ni"} ! skeleton of digitopodium property_value: axiom_lost_from_external_ontology "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0005025", ontology="VSAO"} property_value: axiom_lost_from_external_ontology "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0005025", ontology="VSAO"} property_value: external_definition "Endochondral bone complex located between the mesopodium and the acropodium and consisting of the metacarpals or metatarsals.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0005025", ontology="VSAO", source="VSAO:NI"} [Term] id: UBERON:0010547 name: pedal digit 1 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] synonym: "foot digit 1 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 1 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002040] xref: EHDAA2:0002040 xref: EMAPA:17725 is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element [Term] id: UBERON:0010548 name: pedal digit 2 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] synonym: "foot digit 2 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 2 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002045] xref: EHDAA2:0002045 xref: EMAPA:17727 is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element [Term] id: UBERON:0010549 name: pedal digit 3 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] synonym: "foot digit 3 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 3 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002050] xref: EHDAA2:0002050 xref: EMAPA:17729 is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element [Term] id: UBERON:0010550 name: pedal digit 4 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] synonym: "foot digit 4 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 4 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002055] xref: EHDAA2:0002055 xref: EMAPA:17731 is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element [Term] id: UBERON:0010551 name: pedal digit 5 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] synonym: "foot digit 5 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit V metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 5 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002060] xref: EHDAA2:0002060 xref: EMAPA:17733 is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element [Term] id: UBERON:0010557 name: pedal digit 1 metatarsal cartilage element def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 1 metatarsal cartilage condensation" EXACT [] xref: EMAPA:18106 is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation [Term] id: UBERON:0010558 name: pedal digit 2 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 2 metatarsal cartilage element" EXACT [] xref: EMAPA:18111 is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation [Term] id: UBERON:0010559 name: pedal digit 3 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 3 metatarsal cartilage element" EXACT [] xref: EMAPA:18116 is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation [Term] id: UBERON:0010560 name: pedal digit 4 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 4 metatarsal cartilage element" EXACT [] xref: EMAPA:18121 is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation [Term] id: UBERON:0010561 name: pedal digit 5 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] synonym: "pedal digit V metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "toe 5 metatarsal cartilage element" EXACT [] xref: EMAPA:18126 is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation [Term] id: UBERON:0010562 name: pedal digit 1 mesenchyme def: "Mesenchyme that is part of a developing pedal digit 1." [OBOL:automatic] synonym: "foot digit 1 mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 mesenchyme" EXACT [OBOL:accepted] synonym: "pedal digit I mesenchyme" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0002039 xref: EMAPA:17462 is_a: UBERON:0005255 ! pedal digit mesenchyme relationship: part_of UBERON:0003631 ! pedal digit 1 [Term] id: UBERON:0010564 name: manual digit 1 mesenchyme def: "Mesenchyme that is part of a developing manual digit 1." [OBOL:automatic] synonym: "fore limb digit 1 mesenchyme" EXACT [OBOL:accepted] synonym: "hand digit 1 mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I mesenchyme" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000513 xref: EMAPA:17431 is_a: UBERON:0005257 ! manual digit mesenchyme relationship: part_of UBERON:0001463 ! manual digit 1 [Term] id: UBERON:0010565 name: manual digit 1 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "finger 1 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000515] synonym: "fore limb digit 1 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 1 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpal 1 pre-cartilage condensation" EXACT [] xref: EHDAA2:0000515 xref: EMAPA:17714 is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element [Term] id: UBERON:0010566 name: manual digit 2 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "finger 2 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000521] synonym: "fore limb digit 2 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 2 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit II metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpal 2 pre-cartilage condensation" EXACT [] xref: EHDAA2:0000521 xref: EMAPA:17716 is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element [Term] id: UBERON:0010567 name: manual digit 3 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "finger 3 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000527] synonym: "fore limb digit 3 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 3 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit III metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpal 3 pre-cartilage condensation" EXACT [] xref: EHDAA2:0000527 xref: EMAPA:17718 is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element [Term] id: UBERON:0010568 name: manual digit 4 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "finger 4 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000533] synonym: "fore limb digit 4 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 4 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit IV metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpal 4 pre-cartilage condensation" EXACT [] xref: EHDAA2:0000533 xref: EMAPA:17720 is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element [Term] id: UBERON:0010569 name: manual digit 5 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "finger 5 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000539] synonym: "fore limb digit 5 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 5 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit V metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpal 5 pre-cartilage condensation" EXACT [] xref: EHDAA2:0000539 xref: EMAPA:17722 is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element [Term] id: UBERON:0010570 name: manual digit 1 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpus 1 cartilage element" EXACT [] xref: EHDAA2:0000514 xref: EMAPA:18065 is_a: UBERON:0010699 ! manual digit metacarpus cartilage element is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation [Term] id: UBERON:0010571 name: manual digit 2 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit II metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpus 2 cartilage element" EXACT [] xref: EHDAA2:0000520 xref: EMAPA:18070 is_a: UBERON:0010699 ! manual digit metacarpus cartilage element is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation [Term] id: UBERON:0010572 name: manual digit 3 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit III metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpus 3 cartilage element" EXACT [] xref: EHDAA2:0000526 xref: EMAPA:18075 is_a: UBERON:0010699 ! manual digit metacarpus cartilage element is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation [Term] id: UBERON:0010573 name: manual digit 4 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit IV metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpus 4 cartilage element" EXACT [] xref: EHDAA2:0000532 xref: EMAPA:18080 is_a: UBERON:0010699 ! manual digit metacarpus cartilage element is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation [Term] id: UBERON:0010574 name: manual digit 5 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit V metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metacarpus 5 cartilage element" EXACT [] xref: EHDAA2:0000538 xref: EMAPA:18085 is_a: UBERON:0010699 ! manual digit metacarpus cartilage element is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation [Term] id: UBERON:0010575 name: manual digit 1 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 1 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 1 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000516 xref: EMAPA:17715 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element [Term] id: UBERON:0010576 name: manual digit 2 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 2 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 2 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit II phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000522 xref: EMAPA:17717 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element [Term] id: UBERON:0010577 name: manual digit 3 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 3 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 3 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit III phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000528 xref: EMAPA:17719 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element [Term] id: UBERON:0010578 name: manual digit 4 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 4 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 4 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit IV phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000534 xref: EMAPA:17721 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element [Term] id: UBERON:0010579 name: manual digit 5 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 5 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 5 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit V phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000540 xref: EMAPA:17723 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element [Term] id: UBERON:0010580 name: pedal digit 1 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] synonym: "foot digit 1 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0002041 xref: EMAPA:17726 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element [Term] id: UBERON:0010581 name: pedal digit 2 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] synonym: "foot digit 2 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0002046 xref: EMAPA:17728 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element [Term] id: UBERON:0010582 name: pedal digit 3 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] synonym: "foot digit 3 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0002051 xref: EMAPA:17730 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element [Term] id: UBERON:0010583 name: pedal digit 4 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] synonym: "foot digit 4 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0002056 xref: EMAPA:17732 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element [Term] id: UBERON:0010584 name: pedal digit 5 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] synonym: "foot digit 5 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit V phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0002061 xref: EMAPA:17734 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element [Term] id: UBERON:0010585 name: pedal digit phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] synonym: "foot digit phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "foot phalanx pre-cartilage condensation" EXACT [VHOG:0000952] synonym: "hind limb digit phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hindlimb phalanx pre-cartilage condensation" EXACT [] synonym: "pes phalanx pre-cartilage condensation" EXACT [] xref: EMAPA:32950 xref: VHOG:0000952 is_a: UBERON:0010700 ! phalanx pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation is_a: UBERON:0015030 ! pedal digit phalanx endochondral element [Term] id: UBERON:0010586 name: manual digit phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit mesenchyme." [OBOL:automatic] synonym: "fore limb digit phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "forelimb phalanx pre-cartilage condensation" EXACT [] synonym: "hand digit phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hand phalanx pre-cartilage condensation" EXACT [VHOG:0000954] synonym: "manus phalanx pre-cartilage condensation" EXACT [] xref: EMAPA:32639 xref: VHOG:0000954 is_a: UBERON:0010700 ! phalanx pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015024 ! manual digit phalanx endochondral element [Term] id: UBERON:0010675 name: manual digit 1 phalanx cartilage element def: "A cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18066 is_a: UBERON:0010686 ! manual digit phalanx cartilage element is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation [Term] id: UBERON:0010676 name: manual digit 2 phalanx cartilage element def: "A cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit II phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18071 is_a: UBERON:0010686 ! manual digit phalanx cartilage element is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation [Term] id: UBERON:0010677 name: manual digit 3 phalanx cartilage element def: "A cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit III phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18076 is_a: UBERON:0010686 ! manual digit phalanx cartilage element is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation [Term] id: UBERON:0010678 name: manual digit 4 phalanx cartilage element def: "A cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit IV phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18081 is_a: UBERON:0010686 ! manual digit phalanx cartilage element is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation [Term] id: UBERON:0010679 name: manual digit 5 phalanx cartilage element def: "A cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit V phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18086 is_a: UBERON:0010686 ! manual digit phalanx cartilage element is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation [Term] id: UBERON:0010680 name: pedal digit 1 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18107 is_a: UBERON:0010685 ! pedal digit phalanx cartilage element is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation [Term] id: UBERON:0010681 name: pedal digit 2 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18112 is_a: UBERON:0010685 ! pedal digit phalanx cartilage element is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation [Term] id: UBERON:0010682 name: pedal digit 3 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18117 is_a: UBERON:0010685 ! pedal digit phalanx cartilage element is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation [Term] id: UBERON:0010683 name: pedal digit 4 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18122 is_a: UBERON:0010685 ! pedal digit phalanx cartilage element is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation [Term] id: UBERON:0010684 name: pedal digit 5 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit V phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EMAPA:18127 is_a: UBERON:0010685 ! pedal digit phalanx cartilage element is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation [Term] id: UBERON:0010685 name: pedal digit phalanx cartilage element def: "A cartilage element that is part of a pedal digit mesenchyme." [OBOL:automatic] synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32948 is_a: UBERON:0010701 ! phalanx cartilage element is_a: UBERON:0015030 ! pedal digit phalanx endochondral element is_a: UBERON:0035129 ! pes cartilage element relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation [Term] id: UBERON:0010686 name: manual digit phalanx cartilage element def: "A cartilage element that is part of a manual digit mesenchyme." [OBOL:automatic] synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:32658 is_a: UBERON:0010701 ! phalanx cartilage element is_a: UBERON:0015024 ! manual digit phalanx endochondral element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage condensation [Term] id: UBERON:0010687 name: pedal digit metatarsal pre-cartilage condensation synonym: "foot digit metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "metatarsal bone pre-cartilage condensation" EXACT [] synonym: "metatarsal pre-cartilage condensation" RELATED [EMAPA:32956] synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948] xref: EMAPA:32956 xref: EMAPA:35568 xref: VHOG:0000948 is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element [Term] id: UBERON:0010688 name: skeleton of manual acropodium def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the manual autopodium - i.e. the bones of the hands or their cartilaginous precursors[VSAO,modified]." [https://orcid.org/0000-0002-6601-2165, VSAO:0005029, VSAO:NI] synonym: "all phalanges in forelimb autopod" EXACT [] synonym: "anterior acropodium" RELATED [VSAO:0005029, VSAO:NI] synonym: "anterior acropodium skeleton" EXACT [] synonym: "fore acropodium skeleton" EXACT [] synonym: "hand digit skeleton" EXACT [] synonym: "manual digit skeleton" EXACT [] synonym: "manual phalanges" EXACT OMO:0003004 [VSAO:0005029, VSAO:NI] synonym: "phalanges of hand" EXACT [FMA:71337] synonym: "phalanges of manus" EXACT [] synonym: "set of manual phalanges" EXACT [] synonym: "set of phalanges of hand" EXACT [FMA:71337] synonym: "set of phalanges of manus" EXACT [] xref: FMA:71337 xref: VSAO:0005029 xref: Wikipedia:Phalanges_of_the_hand is_a: UBERON:0010543 ! acropodial skeleton relationship: part_of UBERON:0012151 {source="PHENOSCAPE:ni"} ! skeleton of manual digitopodium [Term] id: UBERON:0010690 name: manual digit 1 epithelium def: "An epithelium that is part of a manual digit 1." [OBOL:automatic] synonym: "fore limb digit 1 epithelium" EXACT [OBOL:accepted] synonym: "hand digit 1 epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I epithelium" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000512 xref: EMAPA:17430 is_a: UBERON:0005227 ! manual digit epithelium relationship: part_of UBERON:0001463 ! manual digit 1 [Term] id: UBERON:0010693 name: pedal digit 1 epithelium def: "An epithelium that is part of a pedal digit 1." [OBOL:automatic] synonym: "foot digit 1 epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 epithelium" EXACT [OBOL:accepted] synonym: "pedal digit I epithelium" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0002038 xref: EMAPA:17461 is_a: UBERON:0005226 ! pedal digit epithelium relationship: part_of UBERON:0003631 ! pedal digit 1 [Term] id: UBERON:0010695 name: mesenchyme of tarsal region def: "Mesenchyme of the carpal region that contributes to the tarsal skeleton." [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:18502 is_a: UBERON:0003860 ! hindlimb mesenchyme relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0010696 name: skeleton of pedal acropodium def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the pedal autopodium - i.e. the bones of the foot or their cartilaginous precursors[cjm]." [https://orcid.org/0000-0002-6601-2165] synonym: "all phalanges in hindlimb autopod" EXACT [] synonym: "foot digit skeleton" EXACT [] synonym: "hind acropodium skeleton" EXACT [] synonym: "pedal phalanges" EXACT [VSAO:0005030, VSAO:NI] synonym: "phalanges of foot" EXACT [FMA:78512] synonym: "phalanges of pes" EXACT [] synonym: "posterior acropodium" RELATED [VSAO:0005030, VSAO:NI] synonym: "posterior acropodium skeleton" EXACT [] synonym: "set of pedal phalanges" EXACT [] synonym: "set of phalanges of foot" EXACT [FMA:78512] synonym: "set of phalanges of pes" EXACT [] xref: FMA:78512 xref: VSAO:0005030 xref: Wikipedia:Phalanges_of_the_foot is_a: UBERON:0010543 ! acropodial skeleton relationship: part_of UBERON:0012152 {source="PHENOSCAPE:ni"} ! skeleton of pedal digitopodium [Term] id: UBERON:0010697 name: pedal digit metatarsal cartilage element synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "metatarsal cartilage condensation" RELATED [EMAPA:32951] xref: EMAPA:32951 is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element is_a: UBERON:0035129 ! pes cartilage element relationship: develops_from UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation property_value: editor_note "EMAPA represents the specific child classes as being part of the digit mesenchyme - we follow this although for the fully formed structure we represent the metatarsals as adjoining rather than being part of the digit skeleton" xsd:string [Term] id: UBERON:0010698 name: manual digit metacarpus pre-cartilage condensation synonym: "fore limb digit metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "metacarpal bone pre-cartilage condensation" EXACT [VHOG:0000953] synonym: "metacarpal pre-cartilage condensation" EXACT [] synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953] xref: EMAPA:32850 xref: VHOG:0000953 is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015042 ! manual digit metacarpus endochondral element [Term] id: UBERON:0010699 name: manual digit metacarpus cartilage element synonym: "finger metacarpus cartilage element" EXACT [] synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "metacarpal cartilage condensation" RELATED [EMAPA:32849] synonym: "metacarpal cartilage element" EXACT [] synonym: "metacarpus cartilage element" EXACT [] xref: EMAPA:32849 is_a: UBERON:0015042 ! manual digit metacarpus endochondral element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation [Term] id: UBERON:0010700 name: phalanx pre-cartilage condensation xref: EMAPA:32720 is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0015023 ! phalanx endochondral element relationship: part_of UBERON:0010702 {source="EMAPA"} ! digit mesenchyme [Term] id: UBERON:0010701 name: phalanx cartilage element synonym: "phalanx cartilage condensation" EXACT [EMAPA:32721] xref: EMAPA:32721 is_a: UBERON:0015023 ! phalanx endochondral element is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation [Term] id: UBERON:0010702 name: digit mesenchyme def: "Mesenchyme of the digit region." [http://orcid.org/0000-0002-6601-2165] synonym: "digital ray" RELATED [NCIT:C34141] xref: EMAPA:32719 xref: NCIT:C34141 xref: UMLS:C1511959 is_a: UBERON:0009749 ! limb mesenchyme relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0010703 name: forelimb zeugopod skeleton def: "The collection of all skeletal elements in an forelimb zeugopod region." [https://orcid.org/0000-0002-6601-2165] synonym: "antebrachial skeleton" EXACT [] synonym: "antebrachium skeleton" EXACT [PHENOSCAPE:ni] synonym: "anterior zeugopodium" RELATED [VSAO:0005011, VSAO:NI] synonym: "anterior zeugopodium skeleton" EXACT [VSAO:0005011, VSAO:NI] synonym: "fore epipodium" RELATED [AAO:0000200] synonym: "fore epipodium skeleton" EXACT [] synonym: "forearm skeleton" EXACT [FMA:71199] synonym: "forelimb epipodium" RELATED [VSAO:0005011, VSAO:NI] synonym: "forelimb epipodium skeleton" RELATED [] synonym: "mesomere 2 of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] synonym: "radius and ulna" RELATED [] synonym: "skeleton of forearm" EXACT HUMAN_PREFERRED [FMA:71199] synonym: "wing zeugopod skeleton" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: AAO:0000200 xref: FMA:71199 xref: VSAO:0005011 is_a: UBERON:0011584 ! zeugopodial skeleton relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002386 ! forelimb zeugopod property_value: editor_note "adding proxinally_connected_to humerus causes inconsistencies - requires investigation" xsd:string property_value: external_definition "Segment of the forearm corresponding to the radius and ulna.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000200", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0010704 name: parenchyma of quadrate lobe of liver def: "A liver parenchyma that is part of a quadrate lobe of liver." [OBOL:automatic] synonym: "liver right quadrate lobe parenchyma" EXACT [EHDAA2:0001014] synonym: "parenchyma of quadrate lobe" EXACT [EMAPA:18320] xref: EHDAA2:0001014 xref: EMAPA:18320 xref: FMA:71676 is_a: UBERON:0005221 ! liver right lobe parenchyma relationship: part_of UBERON:0001116 ! quadrate lobe of liver [Term] id: UBERON:0010706 name: parenchyma of caudate lobe of liver def: "A liver parenchyma that is part of a caudate lobe of liver." [OBOL:automatic] synonym: "liver right caudate lobe parenchyma" EXACT [EHDAA2:0001007] synonym: "parenchyma of caudate lobe" EXACT [EMAPA:18315] xref: EHDAA2:0001007 xref: EMAPA:18315 xref: FMA:71659 is_a: UBERON:0005221 ! liver right lobe parenchyma is_a: UBERON:0005222 ! liver left lobe parenchyma relationship: part_of UBERON:0001117 ! caudate lobe of liver [Term] id: UBERON:0010707 name: appendage girdle complex def: "An organism subdivision that includes both an appendage and its associated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [https://github.com/obophenotype/uberon/wiki/Appendages-and-the-appendicular-skeleton, https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "appendage complex" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "appendage-girdle complex" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "appendage/girdle complex" EXACT [VSAO:0000214] synonym: "girdle plus limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "limb" RELATED INCONSISTENT [FMA:7182] xref: EMAPA:37858 {source="MA:th"} xref: FMA:7182 xref: VSAO:0000214 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0015212 ! lateral structure relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 property_value: editor_note "It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO]" xsd:string property_value: external_comment "It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO]" xsd:string {date_retrieved="2012-09-06", external_class="VSAO:0000214", ontology="VSAO", source="Curator"} property_value: external_definition "Anatomical group that consists of the soft and skeletal tissues of the appendicular region of the body and the appendage proper.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000214", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070"} property_value: external_ontology_notes "note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)" xsd:string {external_ontology="FMA"} creation_date: 2012-04-23T10:46:51Z [Term] id: UBERON:0010708 name: pectoral complex def: "Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213] subset: pheno_slim synonym: "pectoral appendage/girdle complex" EXACT [VSAO:0000213] synonym: "pectoral girdle plus anterior limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pectoral girdle plus pectoral limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "upper limb" RELATED INCONSISTENT [FMA:7183] synonym: "upper limb and pectoral girdle" RELATED HUMAN_PREFERRED [https://orcid.org/0000-0002-6601-2165] synonym: "upper limb and shoulder" RELATED [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37860 {source="MA:th"} xref: FMA:7183 xref: SCTID:110716002 xref: VSAO:0000213 is_a: UBERON:0010707 ! appendage girdle complex property_value: external_definition "Appendage girdle complex that when present, encompasses the pectoral appendage and half of the pectoral girdle.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000213", ontology="VSAO", source="VSAO:MAH"} property_value: external_ontology_notes "note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region)" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010709 name: pelvic complex def: "Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215] subset: pheno_slim synonym: "lower limb" RELATED INCONSISTENT [FMA:7184] synonym: "lower limb and pelvic girdle" RELATED HUMAN_PREFERRED [https://orcid.org/0000-0002-6601-2165] synonym: "lower limb and pelvis" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "pelvic appendage/girdle complex" EXACT [VSAO:0000215] synonym: "pelvic girdle plus pelvic limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pelvic girdle plus posterior limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37863 {source="MA:th"} xref: FMA:7184 xref: SCTID:416631005 xref: VSAO:0000215 is_a: UBERON:0010707 ! appendage girdle complex relationship: mutually_spatially_disjoint_with UBERON:0010708 ! pectoral complex property_value: external_definition "Appendage girdle complex that when present, encompasses the pelvic appendage and the pelvic girdle.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000215", ontology="VSAO", source="VSAO:MAH"} property_value: external_ontology_notes "note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010710 name: pectoral fin skeleton def: "Paired fin skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid." [TAO:wd] subset: efo_slim synonym: "forefin skeleton" EXACT [TAO:0000943] xref: EFO:0003594 xref: TAO:0000943 xref: VSAO:0000153 xref: ZFA:0000943 is_a: UBERON:0007272 ! pectoral appendage skeleton is_a: UBERON:0010713 ! paired fin skeleton relationship: part_of UBERON:0000151 {source="TAO"} ! pectoral fin [Term] id: UBERON:0010711 name: pelvic fin skeleton def: "Paired fin skeleton located in the abdominal position that consists of supporting endochondral radialsB and dermal fin rays or lepidotrichia." [TAO:0001387] xref: TAO:0001387 xref: VSAO:0000154 xref: ZFA:0001387 is_a: UBERON:0007273 ! pelvic appendage skeleton is_a: UBERON:0010713 ! paired fin skeleton relationship: part_of UBERON:0000152 {source="TAO"} ! pelvic fin property_value: external_ontology_notes "the girdle is part of the pelvic fin skeleton in ZFA - needs resolved" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0010712 name: limb skeleton subdivision def: "Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI] xref: VSAO:0005018 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0002091 {source="VSAO"} ! appendicular skeleton relationship: part_of UBERON:0002101 ! limb property_value: editor_note "note the distinction between this and skeleton of limb" xsd:string [Term] id: UBERON:0010713 name: paired fin skeleton def: "The collection of all skeletal elements in a single paired fin." [https://orcid.org/0000-0002-6601-2165] xref: TAO:0000027 xref: VSAO:0000169 xref: ZFA:0000027 is_a: UBERON:0011582 ! paired limb/fin skeleton is_a: UBERON:0012353 ! fin skeleton relationship: part_of UBERON:0002534 ! paired fin property_value: external_definition "Skeletal system that consists of the paired fins (pectoral or pelvic fins).[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000027", ontology="TAO", source="TAO:wd"} property_value: external_definition "Skeletal system that consists of the paired fins (pectoral or pelvic fins).[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000169", ontology="VSAO", source="TAO:curator"} [Term] id: UBERON:0010714 name: iliac cartilage element def: "An iliac endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "iliac cartilage condensation" RELATED [EMAPA:18347] xref: EHDAA2:0000808 xref: EMAPA:18347 xref: VHOG:0001126 is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0015054 ! iliac endochondral element relationship: develops_from UBERON:0006247 {source="EHDAA2"} ! iliac pre-cartilage condensation [Term] id: UBERON:0010718 name: pubic cartilage element def: "A pubic endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "pubic cartilage condensation" RELATED [EMAPA:26928] xref: EHDAA2:0001573 xref: EMAPA:26928 is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0015055 ! pubic endochondral element relationship: develops_from UBERON:0006285 {source="EHDAA2"} ! pubic pre-cartilage condensation [Term] id: UBERON:0010719 name: girdle skeleton def: "The subdivision of the skeleton of either the pectoral or pelvic girdle." [https://orcid.org/0000-0002-6601-2165] synonym: "skeleton of girdle" EXACT [] xref: AAO:0010686 xref: VSAO:0000302 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0007823 ! appendage girdle region property_value: axiom_lost_from_external_ontology "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: part_of subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000302", ontology="VSAO"} property_value: axiom_lost_from_external_ontology "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: proximally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000302", ontology="VSAO"} property_value: external_definition "Skeletal subdivision that is part of the appendage girdle region.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000302", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070"} [Term] id: UBERON:0010720 name: hindlimb zeugopod skeleton def: "Subdivision of skeleton consisting of all skeletal elements in an hindlimb zeugopod region. Typically consists of the tibia and the fibula." [https://orcid.org/0000-0002-6601-2165] synonym: "crural skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "crus skeleton" EXACT [PHENOSCAPE:ni] synonym: "hind epipodium" RELATED [AAO:0000216] synonym: "hindlimb epipodium" RELATED [VSAO:0005014, VSAO:NI] synonym: "hindlimb zygopod skeleton" EXACT [] synonym: "mesomere 2 of pelvic appendage" RELATED HOMOLOGY [ISBN:0226313409] synonym: "posterior zeugopodium" RELATED INCONSISTENT [VSAO:0005014] synonym: "posterior zeugopodium skeleton" EXACT [] synonym: "skeleton cruris" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] xref: AAO:0000216 xref: VSAO:0005014 is_a: UBERON:0011584 ! zeugopodial skeleton relationship: part_of UBERON:0003823 ! hindlimb zeugopod property_value: external_definition "Segment of the leg corresponding to the tibia and fibula.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000216", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0010721 name: distal tarsal bone def: "There are three cuneiform bones in the human foot: the medial cuneiform the intermediate cuneiform also known as the middle the lateral cuneiform. They are located between the navicular bone and the first, second and third metatarsal bones and are medial to the cuboid bone[WP, unvetted, human specific]." [Wikipedia:Cuneiform_(anatomy)] synonym: "cuneiform" RELATED [] synonym: "cuneiform bone" EXACT [FMA:24517] synonym: "distal tarsal" EXACT [AAO:0000914] synonym: "distal tarsal bone" EXACT [] synonym: "os cuneiform" EXACT [] synonym: "os cuneiforme" EXACT [] xref: AAO:0000914 xref: FMA:24517 xref: NCIT:C32416 xref: SCTID:182102002 xref: UMLS:C1511560 {source="ncithesaurus:Cuneiform_Bone_of_the_Foot"} xref: Wikipedia:Cuneiform_(anatomy) is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0015099 ! distal tarsal endochondral element is_a: UBERON:0018102 ! distal mesopodial bone relationship: develops_from UBERON:0015100 ! distal tarsal cartilage property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png" xsd:anyURI property_value: external_definition "Series of elements that articulate with the metatarsals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000914", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0010722 name: accessory bone def: "A bone which does not occur frequently in the body but is still present in a significantly large number of organisms." [Wikipedia:Accessory_bone] xref: Wikipedia:Accessory_bone is_a: UBERON:0001474 ! bone element [Term] id: UBERON:0010723 name: os vesalianum pedis def: "An accessory bone located proximal to the base of the fifth metatarsal. Its prevalence has been reported to be from 0.1% to 1.0%. This bone is found within the peroneus brevis tendon and is considered to be asymptomatic in the majority of people." [PMID:16291851] synonym: "pedal vesalian bone" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vesalian bone" BROAD [] xref: SCTID:182149003 is_a: UBERON:0010721 {source="cjm"} ! distal tarsal bone is_a: UBERON:0010722 ! accessory bone [Term] id: UBERON:0010724 name: lateral tubercle of talus def: "An accessory bone tubercle which if present lies posterior to the talus." [Wikipedia:Os_trigonum] synonym: "accessory talus" EXACT [Wikipedia:Os_trigonum] synonym: "os trigonum" EXACT OMO:0003011 [FMA:TA] synonym: "os trigonum of talus" EXACT [FMA:33655] synonym: "tuberculum laterale (talus)" EXACT [FMA:33655] xref: FMA:33655 xref: SCTID:87573005 xref: Wikipedia:Os_trigonum is_a: UBERON:0005813 {source="FMA"} ! tubercle relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0010725 name: accessory navicular bone def: "An accessory bone of the pes that occasionally develops abnormally in front of the ankle towards the inside of the pes. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic." [Wikipedia:Accessory_navicular_bone] xref: MESH:C536002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:118496000 xref: Wikipedia:Accessory_navicular_bone is_a: UBERON:0005899 ! pes bone is_a: UBERON:0010722 ! accessory bone [Term] id: UBERON:0010726 name: os vesalianum manus synonym: "manual vesalian bone" EXACT [http://orcid.org/0000-0002-6601-2165] xref: http://www.anatomyatlases.org/AnatomicVariants/SkeletalSystem/Images/94.jpg is_a: UBERON:0001481 {source="cjm"} ! distal carpal bone is_a: UBERON:0010722 ! accessory bone [Term] id: UBERON:0010727 name: sutural bone def: "A piece of bone that is located within a suture in the cranium." [Wikipedia:Wormian_bones] synonym: "Wormian bone" EXACT [FMA:59327] xref: FMA:59327 xref: SCTID:272677004 xref: Wikipedia:Wormian_bones is_a: UBERON:0004766 ! cranial bone is_a: UBERON:0010428 {source="FMA"} ! flat bone relationship: part_of UBERON:0003685 ! cranial suture [Term] id: UBERON:0010728 name: sphenoid lesser wing pre-cartilage condensation def: "An orbitosphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] xref: EHDAA2:0003449 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0009891 ! facial mesenchyme is_a: UBERON:0015059 ! orbitosphenoid endochondral element relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation [Term] id: UBERON:0010732 name: alisphenoid pre-cartilage condensation def: "An alisphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "sphenoid greater wing pre-cartilage condensation" EXACT [EHDAA2:0003448] xref: EHDAA2:0003448 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009891 ! facial mesenchyme is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation [Term] id: UBERON:0010733 name: alisphenoid cartilage element def: "An alisphenoid endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "alisphenoid cartilage" RELATED [] synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] xref: EHDAA2:0003450 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009891 ! facial mesenchyme is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0010732 {source="EHDAA2"} ! alisphenoid pre-cartilage condensation relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid cartilage element [Term] id: UBERON:0010737 name: distal tarsal bone 4 def: "Endochondral tarsal bone articulating with centralia and metatarsal 4." [VSAO:0005055] synonym: "cuboideum" RELATED [VSAO:0005055] synonym: "distal tarsal 4" BROAD [VSAO:0005055] synonym: "os cuboideum" RELATED OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os tarsale IV" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "tarsal 4" BROAD [AAO:0000932] xref: AAO:0000932 xref: VSAO:0005055 is_a: UBERON:0010721 ! distal tarsal bone is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element relationship: develops_from UBERON:0015112 ! distal tarsal bone 4 cartilage property_value: editor_note "We need to restrict the logical definition such that it is *only* connecting to metatarsal 4" xsd:string property_value: external_definition "Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000932", ontology="AAO", source="AAO:LAP"} property_value: terminology_notes "NominaAnatomicaVeterinaria uses os cuboideum as an official synonym for distal tarsal IV, but some sources also use this as the label for the human cuboid bone which is regarded to be formed from tarsals IV and V. We therefore decline to use exact syns in either case." xsd:string [Term] id: UBERON:0010738 name: distal tarsal bone 5 def: "Endochondral tarsal bone articulating with centralia and metatarsal 5." [VSAO:0005056] comment: We need to restrict the logical definition such that it is *only* connecting to metatarsal 5 synonym: "cuboideum" RELATED [VSAO:0005056] synonym: "distal tarsal 5" EXACT [VSAO:0005056] synonym: "tarsal 5" EXACT [AAO:0000933] xref: AAO:0000933 xref: VSAO:0005056 is_a: UBERON:0010721 ! distal tarsal bone is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element relationship: develops_from UBERON:0015115 ! distal tarsal bone 5 cartilage property_value: external_definition "Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000933", ontology="AAO", source="AAO:Francis_1934"} [Term] id: UBERON:0010739 name: distal carpal bone 5 def: "Endochondral carpal bone similar to distal carpal 4, but lost in most reptiles and mammals." [VSAO:0005047] synonym: "carpal 5" RELATED [AAO:0000851] synonym: "distal carpal 5" EXACT [VSAO:0005047] synonym: "hamate" RELATED [VSAO:0005047] synonym: "os hamatum" RELATED [VSAO:0005047] synonym: "unciform" RELATED [VSAO:0005047] synonym: "uncinate" RELATED [VSAO:0005047] xref: AAO:0000851 xref: VSAO:0005047 is_a: UBERON:0001481 ! distal carpal bone is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element relationship: develops_from UBERON:0015097 ! distal carpal bone 5 cartilage property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000851", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "lost in most reptiles and mammals[VSAO]. Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements" xsd:string {source="AAO"} [Term] id: UBERON:0010740 name: bone of appendage girdle complex def: "A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] subset: pheno_slim synonym: "bone of extended limb/fin region" RELATED [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "limb bone" RELATED [MA:0000688, UBERONREF:0000003] xref: EMAPA:35494 xref: MA:0000688 is_a: UBERON:0001474 ! bone element relationship: part_of UBERON:0002091 {notes="UBERONREF:0000003"} ! appendicular skeleton relationship: part_of UBERON:0010707 ! appendage girdle complex [Term] id: UBERON:0010741 name: bone of pectoral complex def: "A bone that is part of a pectoral complex. Examples: scapula, manus phalanx, any carpal bone, any bone of the pectoral fin." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] subset: pheno_slim synonym: "bone of forelimb or pectoral fin or pectoral girdle" RELATED [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "forelimb bone" RELATED [MA:0000612, UBERONREF:0000003] synonym: "wing bone" NARROW SENSU [UBERONREF:0000003] xref: EMAPA:35933 xref: MA:0000612 is_a: UBERON:0010740 ! bone of appendage girdle complex relationship: part_of UBERON:0010708 ! pectoral complex property_value: editor_note "considering adding pectoral and pelvic complex skeleton classes" xsd:string property_value: external_ontology_notes "note that the MA class includes girdle parts so it belongs here;" xsd:string {external_ontology="MA"} [Term] id: UBERON:0010742 name: bone of pelvic complex def: "A bone that is part of a pelvic complex. Examples: pubis, ischium, fot phalanx, any tarsal bone, any bone of the pelvic fin or girdle." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] subset: pheno_slim synonym: "hindlimb bone" RELATED [MA:0000660, UBERONREF:0000003] xref: EMAPA:35934 xref: MA:0000660 is_a: UBERON:0010740 {source="MA"} ! bone of appendage girdle complex relationship: part_of UBERON:0010709 ! pelvic complex property_value: external_ontology_notes "the MA class called 'hindlimb bone' belongs here, as it includes bones in the pelvic girdle" xsd:string {external_ontology="MA"} [Term] id: UBERON:0010743 name: meningeal cluster def: "The collection of all meningeal layers that line a central nervous system." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "cerebral meninges" EXACT [] synonym: "cluster of meninges" EXACT [FMA:231572] synonym: "meninges" EXACT [FMA:231572] xref: EHDAA2:0004661 xref: FMA:231572 xref: NCIT:C12349 xref: neuronames:1465 xref: SCTID:362879001 xref: UMLS:C0228116 xref: Wikipedia:Meninges is_a: UBERON:0034925 ! anatomical collection relationship: part_of UBERON:0001017 ! central nervous system property_value: has_relational_adjective "meningeal" xsd:string property_value: taxon_notes "In some primitive organisms, the meningeal cluster includes only the primitive meninx" xsd:string [Term] id: UBERON:0010744 name: sacral vertebra pre-cartilage condensation def: "A sacral vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:0001774] xref: EHDAA2:0001774 xref: EMAPA:17677 is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0015010 ! sacral vertebra endochondral element [Term] id: UBERON:0010745 name: sacral vertebra cartilage element def: "A sacral vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "sacral vertebral cartilage condensation" EXACT [] synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] xref: EHDAA2:0001773 xref: EMAPA:18009 is_a: UBERON:0011094 ! vertebra cartilage element is_a: UBERON:0015010 ! sacral vertebra endochondral element is_a: UBERON:2001457 ! postcranial axial cartilage relationship: develops_from UBERON:0010744 {source="EHDAA2"} ! sacral vertebra pre-cartilage condensation [Term] id: UBERON:0010746 name: iliac blade def: "The extension of the ilium above the level of the acetabulum. Attachment site for both hindlimb and caudal musculature. Medially is the site of attachment of the sacral ribs, where these exist[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/69, PHENOSCAPE:ad] subset: pheno_slim synonym: "a. ossis ilii" EXACT OMO:0003011 [Wikipedia:Wing_of_ilium] synonym: "ala of ilium" EXACT [FMA:42826] synonym: "ala ossis ilii" EXACT OMO:0003011 [FMA:TA, Wikipedia:Wing_of_ilium] synonym: "ilium ala" EXACT [FMA:42826] synonym: "wing of ilium" EXACT [] synonym: "wing of the ilium" EXACT [Wikipedia:Wing_of_ilium] xref: FMA:42826 xref: SCTID:182024000 xref: Wikipedia:Wing_of_ilium is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray235.png" xsd:anyURI property_value: taxon_notes "Often dorsally expanded in amniotes" xsd:string {source="ad"} [Term] id: UBERON:0010747 name: body of ilium def: "The body of ilium enters into the formation of the acetabulum, of which it forms rather less than two-fifths. Its external surface is partly articular, partly non-articular; the articular segment forms part of the lunate surface of the acetabulum, the non-articular portion contributes to the acetabular fossa. The internal surface of the body is part of the wall of the lesser pelvis and gives origin to some fibers of the Obturator internus. Below, it is continuous with the pelvic surfaces of the ischium and pubis, only a faint line indicating the place of union." [Wikipedia:Body_of_ilium] subset: pheno_slim synonym: "corpus ossis ilii" RELATED OMO:0003011 [Wikipedia:Body_of_ilium] synonym: "ilium body" EXACT [FMA:42825] xref: FMA:42825 xref: SCTID:292524005 xref: Wikipedia:Body_of_ilium is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:0010748 name: lymph node follicle def: "A lymphoid follicle that is part of a lymph node." [OBOL:automatic] synonym: "follicle of lymph node" EXACT [] xref: EMAPA:35527 xref: MA:0000742 is_a: UBERON:0000444 ! lymphoid follicle relationship: part_of UBERON:0002006 {notes="issues/7", source="MP-def"} ! cortex of lymph node property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.4/assets/3d-nih-f-lymph-node.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.4/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010749 name: middle pharyngeal constrictor def: "The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle." [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "constrictor medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "constrictor pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "constrictores pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "hyopharyngeus" RELATED [] synonym: "middle constrictor" EXACT [FMA:46622] synonym: "middle constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "middle constrictor muscle" RELATED [] synonym: "middle constrictor of pharynx" EXACT [FMA:46622] synonym: "middle constrictor pharyngeus" EXACT [FMA:46622] synonym: "middle pharyngeal constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "musculus constrictor pharyngis medius" EXACT OMO:0003011 [FMA:TA] synonym: "musculus constrictor pharyngis medius" RELATED OMO:0003011 [Wikipedia:Middle_pharyngeal_constrictor_muscle] xref: FMA:46622 xref: NCIT:C33115 xref: SCTID:244802003 xref: UMLS:C1513291 {source="ncithesaurus:Middle_Constrictor_Muscle"} xref: Wikipedia:Middle_pharyngeal_constrictor_muscle is_a: UBERON:0001569 {source="FMA"} ! constrictor muscle of pharynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8f/Musculusconstrictorpharyngismedius.png" xsd:anyURI property_value: external_definition "The middle constrictor is a pharyngeal arches 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus of Vagus and attaches to the hyoid apparatus and the midline raphe.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010750 name: prefrontal bone def: "A bone separating the lacrimal and frontal bones in many tetrapod skulls." [Wikipedia:Prefrontal_bone] synonym: "prefrontal" BROAD [AAO:0000460] xref: AAO:0000460 xref: Wikipedia:Prefrontal_bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone relationship: never_in_taxon NCBITaxon:40674 relationship: never_in_taxon NCBITaxon:8782 relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/44/Dromaeosaurus_skull_en.svg" xsd:anyURI property_value: taxon_notes "It first evolved in the sarcopterygian clade Rhipidistia, which includes lungfish and the Tetrapodomorpha. The prefrontal is found in most modern and extinct lungfish, amphibians and reptiles. It is very small, fused to the frontals or lost in many groups of coelurosaurian theropod dinosaurs and is completely absent in their modern descendants, the birds. The prefrontal was also lost in early mammaliaforms and so is not present in modern mammals either" xsd:string {source="WP"} [Term] id: UBERON:0010751 name: squamous part of temporal bone primordium synonym: "squamosal bone primordium" EXACT [] synonym: "squamosal primordium" EXACT [] xref: EHDAA2:0001907 xref: EHDAA:9536 is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0004339 {source="EHDAA2", source="PMID:11523816"} ! vault of skull [Term] id: UBERON:0010752 name: exoccipital cartilage element def: "An exoccipital endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] xref: EMAPA:18339 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0015051 ! exoccipital endochondral element relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation [Term] id: UBERON:0010753 name: lymph node secondary follicle def: "A secondary follicle that is located in a lymph node." [CL:tm] subset: human_reference_atlas subset: pheno_slim xref: EMAPA:35531 xref: FMA:312352 xref: MA:0000744 is_a: UBERON:0001745 ! secondary nodular lymphoid tissue is_a: UBERON:0010748 {source="MA"} ! lymph node follicle relationship: develops_from UBERON:0010395 ! lymph node primary follicle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010754 name: germinal center def: "A collection of activated B cells at the center of a secondary follicle, formed after B cells become activated and migrate to the center." [CL:tm, https://orcid.org/0000-0002-6601-2165, Wikipedia:Germinal_center] comment: A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation.[GO] subset: human_reference_atlas synonym: "central zone of follice" EXACT [CL:tm] synonym: "light zone of follicle" NARROW [CL:tm] synonym: "lymhpoid nodule" RELATED [CL:tm] synonym: "nodule" RELATED [CL:tm] synonym: "reaction center of follicle" EXACT [CL:tm] xref: BTO:0003671 xref: EV:0100051 xref: MESH:D018858 xref: NCIT:C13337 xref: UMLS:C0282491 {source="ncithesaurus:Germinal_Center"} xref: Wikipedia:Germinal_center is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/60/Germinal_center.svg" xsd:anyURI [Term] id: UBERON:0010755 name: secondary follicle corona def: "The part of the secondary follicle that surrounds the germinal center." [CL:tm, https://orcid.org/0000-0002-6601-2165] synonym: "B cell corona" RELATED [] synonym: "dark zone of follicle" RELATED [CL:tm] synonym: "inactive zone of follicle" EXACT [CL:tm] synonym: "mantle zone" RELATED [] synonym: "peripheral zone of follicle" EXACT [CL:tm] xref: NCIT:C33053 xref: UMLS:C1512987 {source="ncithesaurus:Mantle_Zone"} xref: Wikipedia:Mantle_zone is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue property_value: editor_note "consider making terminology consistent amongst subclasses - see https://github.com/obophenotype/uberon/issues/7" xsd:string [Term] id: UBERON:0010756 name: spleen follicular dendritic cell network def: "The enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response." [MP:0008473] comment: The follicular dendritic cell network is often visualized by using the monoclonal antibody FDC-M2. subset: pheno_slim synonym: "FDC network" BROAD [MP:0008473] synonym: "FDCN" BROAD [MP:0008473] synonym: "spleen FDC network" EXACT [MP:0008473] synonym: "splenic follicular dendritic cell network" EXACT [MP:0008473] xref: EMAPA:37963 {source="MA:th"} is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0004042 ! spleen secondary B follicle [Term] id: UBERON:0010757 name: rib 8 def: "The eighth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_8] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "costa VIII" EXACT OMO:0003011 [] synonym: "eighth rib" EXACT [FMA:8120] synonym: "upper false rib" NARROW [NCBITaxon:9606, PMCID:PMC1327870] xref: EMAPA:19536 xref: FMA:8120 xref: MA:0001408 xref: NCIT:C52760 xref: SCTID:244663007 xref: UMLS:C1709954 {source="ncithesaurus:Rib_8"} is_a: UBERON:0002228 ! rib relationship: present_in_taxon NCBITaxon:9606 property_value: curator_notes "elements are to be defined spatially/topologically" xsd:string property_value: rib_number "8" xsd:nonNegativeInteger property_value: taxon_notes "Typically a false rib in humans but may sometimes be a true one due to sternal attachment" xsd:string {source="PMC1327870"} [Term] id: UBERON:0010758 name: subdivision of organism along appendicular axis def: "A major subdivision of an organism that divides an organism along an axis perpedicular to the main body anterior-posterior axis. In vertebrates, this is typically a fin or limb segment. In insects, this includes segments of appendages such as antennae, as well as segments of the insect leg." [https://orcid.org/0000-0002-6601-2165] subset: upper_level synonym: "appendage segment" EXACT [FBbt:00007018] synonym: "appendicular segment" EXACT [] xref: FBbt:00007018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000026 ! appendage [Term] id: UBERON:0010759 name: equine distal sesamoid def: "Lies on the palmar aspect of the coffin joint between the second phalanx and third phalanx. articulates closely with the distal phalanx, to which it is connected by the impar ligament of the navicular bone. The impar ligament is very strong and permits relatively little motion between the navicular bone and the distal phalanx." [Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid, Wikipedia:Navicular_bone#Horse_anatomy] synonym: "distal sesamoid bone" RELATED [] synonym: "navicular bone" RELATED INCONSISTENT [Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid] xref: SCTID:370654009 xref: Wikipedia:Navicular_bone#Horse_anatomy is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0011141 ! appendicular ossicle is_a: UBERON:0011250 ! autopod bone [Term] id: UBERON:0010760 name: supraglenoid tubercle def: "The supraglenoid tubercle is a region of the scapula to which the long head of the biceps brachii muscle attaches." [Wikipedia:Supraglenoid_tubercle] synonym: "supraglenoid tuberosity" EXACT [FMA:23263] synonym: "tuberculum supraglenoidale" RELATED OMO:0003011 [Wikipedia:Supraglenoid_tubercle] xref: FMA:23263 xref: Wikipedia:Supraglenoid_tubercle is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006633 ! coracoid process of scapula property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png" xsd:anyURI [Term] id: UBERON:0010801 name: calcaneum pre-cartilage condensation def: "A calcaneum endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "calcaneous pre-cartilage condensation" EXACT [] xref: EMAPA:17736 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation is_a: UBERON:0015014 ! calcaneum endochondral element [Term] id: UBERON:0010842 name: calcaneum cartilage element def: "A calcaneum endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "calcaneous cartilage element" EXACT [] xref: EMAPA:18143 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region is_a: UBERON:0015014 ! calcaneum endochondral element is_a: UBERON:0035129 ! pes cartilage element relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation [Term] id: UBERON:0010843 name: clavicle cartilage element def: "A cartilaginous condensation that has the potential to develop into a clavicle." [OBOL:automatic] xref: EMAPA:18342 is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from UBERON:0010844 ! clavicle pre-cartilage condensation relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: taxon_notes "In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal." xsd:string {source="ISBN:978-0-12-319060-4"} [Term] id: UBERON:0010844 name: clavicle pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a clavicle." [OBOL:automatic] xref: EMAPA:18026 is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: taxon_notes "In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal." xsd:string {source="ISBN:978-0-12-319060-4"} [Term] id: UBERON:0010846 name: radius pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a radius bone." [OBOL:automatic] xref: EHDAA2:0001586 is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0015001 ! radius endochondral element relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm property_value: editor_note "still to decide whether this is a distinct pre-cartilage condensation" xsd:string [Term] id: UBERON:0010847 name: ulna pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a ulna." [OBOL:automatic] xref: EHDAA2:0002100 xref: EHDAA:6226 is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0015003 ! ulna endochondral element relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm [Term] id: UBERON:0010848 name: radius-ulna cartilage element def: "A radius-ulna endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] xref: EMAPA:17711 is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010883 ! forelimb cartilage element is_a: UBERON:0015002 ! radius-ulna endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 {source="EMAPA"} ! mesenchyme of forearm property_value: external_ontology_notes "note that this is not represented as a single unit in EHDAA2" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0010849 name: tibia cartilage element def: "A cartilaginous condensation that has the potential to develop into a tibia." [OBOL:automatic] xref: EMAPA:18155 is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015004 ! tibia endochondral element relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme [Term] id: UBERON:0010850 name: tibia pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a tibia." [OBOL:automatic] xref: EHDAA2:0002036 is_a: UBERON:0005259 ! lower leg mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0015004 ! tibia endochondral element relationship: part_of UBERON:0005259 {source="EHDAA2"} ! lower leg mesenchyme [Term] id: UBERON:0010851 name: fibula cartilage element def: "A cartilaginous condensation that has the potential to develop into a fibula." [OBOL:automatic] synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] synonym: "fibulra cartilage condensation" RELATED [EMAPA:18154] xref: EMAPA:18154 is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015013 ! fibula endochondral element relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme [Term] id: UBERON:0010852 name: fibula pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a fibula." [OBOL:automatic] synonym: "fibulal pre-cartilage condensation" EXACT [] synonym: "fibular pre-cartilage condensation" EXACT [] xref: EHDAA2:0000509 xref: EHDAA:6196 is_a: UBERON:0005259 ! lower leg mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0015013 ! fibula endochondral element relationship: part_of UBERON:0005259 {source="EHDAA2"} ! lower leg mesenchyme [Term] id: UBERON:0010853 name: capitulum of humerus def: "A smooth, rounded eminence on the lateral portion of the articular surface of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone." [Wikipedia:Capitulum_of_the_humerus] subset: human_reference_atlas synonym: "capitellum" RELATED [Wikipedia:Capitulum_of_the_humerus] synonym: "capitulum humeri" RELATED OMO:0003011 [Wikipedia:Capitulum_of_the_humerus] synonym: "capitulum of humerus" RELATED [Wikipedia:Capitulum_of_the_humerus] synonym: "dorsal condyle of the humerus" RELATED SENSU [Wikipedia:Capitulum_of_the_humerus] synonym: "humeral capitulum" EXACT [FMA:23373] xref: FMA:23373 xref: SCTID:282816008 xref: Wikipedia:Capitulum_of_the_humerus is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0009988 {source="FMA"} ! condyle of humerus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Capitulumhumeri.PNG" xsd:anyURI property_value: editor_note "TODO - check AAO." xsd:string {source="WP"} property_value: taxon_notes "In birds, where forelimb anatomy has adaptation for flight, its functional if not ontogenetic equivalent is the dorsal condyle of the humerus" xsd:string property_value: taxon_notes "The Capitulum humeri is present in Carnivora, more distinctly in the cat than in the dog. The Fossa coronoidea, present in the cat is medial to the Fossa radialis and accommodates the Processus coronoideus medialis ulnae when the elbow is flexed. A Foramen supratrochleare occurs in carnivora and occasionally in pig.[NOMINA ANATOMICA VETERINARIA (2005)]" xsd:string [Term] id: UBERON:0010854 name: skin of front of neck def: "A skin of neck that is part of a throat." [OBOL:automatic] synonym: "skin of anterior neck" EXACT [FMA:23023] synonym: "skin of anterior part of neck" EXACT [FMA:23023] synonym: "skin of anterior portion of neck" EXACT [FMA:23023] synonym: "skin of throat" EXACT [] xref: FMA:23023 xref: SCTID:181482005 is_a: UBERON:0001417 ! skin of neck is_a: UBERON:0012180 ! head or neck skin relationship: part_of UBERON:0000341 ! throat relationship: part_of UBERON:0011154 ! gular region [Term] id: UBERON:0010855 name: skin of forelimb wing def: "A zone of skin that is part of a forelimb wing." [OBOL:automatic] is_a: UBERON:0003531 ! forelimb skin relationship: part_of UBERON:0000024 ! forelimb wing [Term] id: UBERON:0010856 name: patagium def: "A membranous extension of skin that forms the wing material in animals such as bats. It typically comprises a number of patagial segments, stretching from the side of the body between the forelimb digits and sometimes the hindlimbs." [http://animals.about.com/od/zoologytermsktoz/g/patagium.htm, http://www.brown.edu/Departments/EEB/EML/background/wing_anatomy.htm, Wikipedia:Patagium] synonym: "flight membrane" RELATED [] synonym: "patagia" RELATED OMO:0003004 [] xref: Wikipedia:Patagium is_a: UBERON:0000094 ! membrane organ relationship: part_of UBERON:0000023 ! wing [Term] id: UBERON:0010858 name: inter limb-segment region comment: Examples - region between digits in a human embryo; segments of a bat's patagium synonym: "interlimb" RELATED [] is_a: UBERON:0034929 ! external soft tissue zone [Term] id: UBERON:0010861 name: propatagium def: "In bats and pterosaurs, thin web of skin that extends from the shoulder to the wrist anterior to the upper arm and forearm, and is fixed on the neck or skull." [http://palaeos.com/vertebrates/glossary/glossaryPo.html] is_a: UBERON:0010858 ! inter limb-segment region relationship: part_of UBERON:0010856 ! patagium property_value: taxon_notes "In bats: The patagium present from the neck to the first digit" xsd:string {source="Wikipedia:Patagium"} property_value: taxon_notes "In birds: The triangular fold of skin on leading edge of the wing" xsd:string {source="http://caiquesite.com/glossary.htm"} property_value: taxon_notes "In pterosaurs: the patagium present from the shoulder to the wrist" xsd:string {source="Wikipedia:Patagium"} [Term] id: UBERON:0010862 name: dactylopatagium def: "An interdigital region that is part of a patagium." [OBOL:automatic] is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0010856 ! patagium property_value: taxon_notes "In bats: the portion found within the digits" xsd:string {source="Wikipedia:Patagium"} [Term] id: UBERON:0010863 name: dactylopatagium brevis def: "A dactylopatagium that is connected_to a manual digit 1 and connected_to a manual digit 2." [OBOL:automatic] is_a: UBERON:0010862 ! dactylopatagium [Term] id: UBERON:0010864 name: dactylopatagium minus def: "A dactylopatagium that is connected_to a manual digit 2 and connected_to a manual digit 3." [OBOL:automatic] is_a: UBERON:0010862 ! dactylopatagium [Term] id: UBERON:0010865 name: dactylopatagium medius def: "A dactylopatagium that is connected_to a manual digit 3 and connected_to a manual digit 4." [OBOL:automatic] is_a: UBERON:0010862 ! dactylopatagium [Term] id: UBERON:0010866 name: dactylopatagium major def: "A dactylopatagium that is connected_to a manual digit 4 and connected_to a manual digit 5." [OBOL:automatic] is_a: UBERON:0010862 ! dactylopatagium [Term] id: UBERON:0010867 name: plagiopatagium def: "A flight membrane running between the body and the limb or digits." [http://palaeos.com/vertebrates/glossary/glossaryP.html] synonym: "brachiopatagium" RELATED [Wikipedia:Patagium] is_a: UBERON:0010862 ! dactylopatagium is_a: UBERON:0010868 ! uropropatagium property_value: taxon_notes "In bats: the portion found between the last digit (5) and the hindlimbs" xsd:string {source="Wikipedia:Patagium"} property_value: taxon_notes "In pterosaurs: Brachiopatagium: the portion stretching from the fourth finger to the hindlimbs" xsd:string {source="Wikipedia:Patagium"} [Term] id: UBERON:0010868 name: uropropatagium def: "The membrane that is stretches between the legs of bats, used for flight, and in the case of insect-eating bats, for catching prey." [Wikipedia:Interfemoral_membrane] synonym: "cruropatagium" RELATED [Wikipedia:Patagium] synonym: "interfemoral membrane" EXACT [] synonym: "interfemoral wing membrane" EXACT [] xref: Wikipedia:Interfemoral_membrane is_a: UBERON:0010858 ! inter limb-segment region relationship: part_of UBERON:0010856 ! patagium property_value: taxon_notes "In bats: the posterior portion of the body between the two hindlimbs" xsd:string {source="Wikipedia:Patagium"} property_value: taxon_notes "In pterosaurs: Uropatagium or cruropatagium: the anterior portion between the two hindlimbs, depending on whether it did or did not include the tail" xsd:string {source="Wikipedia:Patagium"} [Term] id: UBERON:0010869 name: calcar def: "A spur of cartilage arising from inner side of ankle and running along part of outer interfemoral membrane in bats." [Wikipedia:Calcar] synonym: "calcaneum" RELATED INCONSISTENT [Wikipedia:Calcar] synonym: "calcar spur" EXACT [] xref: Wikipedia:Calcar is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0010868 ! uropropatagium property_value: function_notes "to help spread the interfemoral membrane which is part of the wing membrane between the tail and the hind legs." xsd:string [Term] id: UBERON:0010878 name: humeral patagium is_a: UBERON:0010855 ! skin of forelimb wing [Term] id: UBERON:0010879 name: tusk def: "A calcareous tooth that is elongated and protrudes from the mouth." [http://orcid.org/0000-0002-6601-2165] xref: SCTID:54040005 xref: Wikipedia:Tusk is_a: UBERON:0001091 ! calcareous tooth property_value: external_definition "Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal's sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical oproperty_value external_definitionof the roots of the teeth" xsd:string {source="Wikipedia:Tusk"} [Term] id: UBERON:0010880 name: gular fold def: "A transverse fold of skin across the throat (Peters 1964)." [http://imnh.isu.edu/digitalatlas/bio/glsry.htm, http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764] synonym: "gular sac" RELATED [Wikipedia:Gular_fold] synonym: "gular skin" RELATED [Wikipedia:Gular_fold] synonym: "throat sac" RELATED [Wikipedia:Gular_fold] xref: AAO:0010238 xref: Wikipedia:Gular_skin is_a: UBERON:0010854 ! skin of front of neck relationship: present_in_taxon NCBITaxon:9590 {notes="gular sac", source="Wikipedia:Siamang"} [Term] id: UBERON:0010881 name: limb cartilage element def: "A skeletal element that is part of a limb and composed of cartilage tissue." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0015061 ! limb endochondral element relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation [Term] id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A skeletal element that is part of a limb and composed of pre-cartilage tissue." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0015061 ! limb endochondral element [Term] id: UBERON:0010883 name: forelimb cartilage element def: "A cartilaginous condensation that has the potential to develop into a forelimb bone." [OBOL:automatic] subset: grouping_class synonym: "forelimb wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:32626 is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015021 ! forelimb endochondral element relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation [Term] id: UBERON:0010884 name: forelimb bone pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a forelimb bone." [OBOL:automatic] subset: grouping_class synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:32625 is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0015021 ! forelimb endochondral element [Term] id: UBERON:0010885 name: hindlimb cartilage element def: "A cartilaginous condensation that has the potential to develop into a hindlimb bone." [OBOL:automatic] synonym: "hindlimb cartilage condensation" EXACT [EMAPA:32632] xref: EMAPA:32632 is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015022 ! hindlimb endochondral element relationship: develops_from UBERON:0010886 ! hindlimb pre-cartilage condensation [Term] id: UBERON:0010886 name: hindlimb pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a hindlimb bone." [OBOL:automatic] synonym: "hindlimb pre-cartilage condensation" EXACT [EMAPA:32638] xref: EMAPA:32638 is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0015022 ! hindlimb endochondral element [Term] id: UBERON:0010887 name: tragus def: "A small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus." [Wikipedia:Tragus_(ear)] subset: pheno_slim synonym: "tragal part of pinna" EXACT [FMA:60998] xref: FMA:60998 xref: NCIT:C33801 xref: SCTID:362541003 xref: UMLS:C0229312 {source="ncithesaurus:Tragus"} xref: Wikipedia:Tragus_(ear) is_a: UBERON:0001444 ! subdivision of head relationship: develops_from UBERON:0016611 {source="Wikipedia-uncited"} ! auditory hillocks, pharyngeal arch 1 derived relationship: part_of UBERON:0001757 {source="FMA"} ! pinna property_value: taxon_notes "The tragus is generally believed to play a role in vertical sound localization in bats" xsd:string [Term] id: UBERON:0010888 name: obsolete seta def: "A hair-like unicellular external process of the body wall or any derivative of the latter; a hair; a bristle." [BTO:0004212] comment: Obsoleted as the term 'seta' refers to a variety of different structures. For insect chaetae, consider the arthropod anatomy ontology. synonym: "bristle" RELATED [BTO:0004212] synonym: "chaeta" RELATED [MIAA:0000152] synonym: "sensory bristle" RELATED [MIAA:0000152] is_obsolete: true consider: BTO:0004212 consider: INSECT:0000114 consider: MIAA:0000152 [Term] id: UBERON:0010889 name: ectethmoid def: "Either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit." [http://www.merriam-webster.com/medical/ectethmoid] synonym: "dorsal nasal capsule" EXACT [PMID:21270050] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001679 ! ethmoid bone property_value: taxon_notes "In avians, the mesethmoid supports upper beak formation" xsd:string [Term] id: UBERON:0010890 name: pelvic complex muscle def: "Muscles of the pelvic girdle, hindlimb or pelvic fin." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "lower limb muscle" RELATED INCONSISTENT [FMA:9622] synonym: "muscle of lower limb" RELATED INCONSISTENT [FMA:9622] synonym: "muscle of pelvic girdle and leg" RELATED [] synonym: "pelvic girdle and hind limb muscles" EXACT [AAO:0000218] synonym: "pelvic girdle or hind limb muscle" NARROW [https://orcid.org/0000-0002-6601-2165] synonym: "pelvic girdle or posterior limb muscle" NARROW [https://orcid.org/0000-0002-6601-2165] xref: AAO:0000218 xref: EMAPA:32634 xref: FMA:9622 xref: MA:0000663 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0014792 {source="prolog"} ! musculature of pelvic complex property_value: external_definition "Muscles of the pelvic girdle, thigh, leg (crus), and foot (pes).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000218", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0010891 name: pectoral complex muscle def: "A muscle of a pectoral girdle, pectoral fin or anterior limb." [https://orcid.org/0000-0002-6601-2165] synonym: "muscle of pectoral girdle and limb" RELATED [] synonym: "muscle of pectoral girdle and wing" NARROW SENSU [NCBITaxon:8782] synonym: "muscle of upper limb" NARROW INCONSISTENT [FMA:9621] synonym: "pectoral girdle and fore limb muscles" EXACT [AAO:0010687] synonym: "upper limb muscle" NARROW INCONSISTENT [FMA:9621] xref: AAO:0010687 xref: EMAPA:32624 xref: FMA:9621 xref: MA:0000615 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0014793 {source="prolog"} ! musculature of pectoral complex property_value: editor_note "the MA class belongs here, based on its current child classes" xsd:string property_value: external_definition "Muscles of the pectoral girdle, arm, forearm, and hand (brachium, antebrachium, manus respectively).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010687", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0010892 name: mesethmoid element def: "An endochondral element of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals." [ISBN:0073040584] synonym: "mesethmoid" RELATED [AAO:0000303] synonym: "ventral nasal capsule" EXACT [PMID:21270050] xref: AAO:0000303 is_a: UBERON:0010363 {source="TAO"} ! endochondral element relationship: develops_from UBERON:0005945 {source="TAO"} ! neurocranial trabecula relationship: dubious_for_taxon NCBITaxon:8292 {comment="EDITOR_NOTE check AAO"} relationship: never_in_taxon NCBITaxon:8782 relationship: part_of UBERON:0011241 {source="ISBN:0073040584"} ! ethmoid region property_value: axiom_lost_from_external_ontology "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000303", ontology="AAO"} property_value: external_definition "Endochondral ossification of the anteromedial portion of the braincase.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000303", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "absent in primitive mammals, ungulates, amphibians, reptiles/birds" xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0010893 name: median external naris alt_id: UBERON:0012123 def: "Am unpaired external naris that lies in the midline of the head." [OBOL:automatic] subset: cyclostome_subset synonym: "median anterior naris" EXACT [] synonym: "median nostril" EXACT [] synonym: "nasohypophysial opening" EXACT [http://tolweb.org/Hyperoartia] is_a: UBERON:0005928 ! external naris relationship: never_in_taxon NCBITaxon:314146 relationship: present_in_taxon NCBITaxon:7762 [Term] id: UBERON:0010894 name: keratinous tooth comment: The hagfish's jawless mouth contains two parallel rows of pointed keratinous teeth subset: cyclostome_subset synonym: "horny denticle" EXACT [http://tolweb.org/Hyperoartia] is_a: UBERON:0003913 ! tooth-like structure relationship: present_in_taxon NCBITaxon:117569 relationship: present_in_taxon NCBITaxon:7762 [Term] id: UBERON:0010895 name: sequential hermaphroditic organism def: "Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex." [CARO:0000045] synonym: "consecutive hermaphroditic organism" RELATED [CARO:0000045] xref: AAO:0010037 xref: BILA:0000045 xref: CARO:0000045 xref: HAO:0000045 xref: TADS:0000608 is_a: UBERON:0007197 {source="CARO"} ! hermaphroditic organism [Term] id: UBERON:0010896 name: piston cartilage subset: cyclostome_subset synonym: "lamprey tongue" RELATED [] synonym: "lamprey tongue cartilage" RELATED [] synonym: "lingual cartilage" EXACT [] synonym: "piston" RELATED [] is_a: UBERON:0007844 ! cartilage element relationship: develops_from UBERON:0034939 ! future piston relationship: part_of UBERON:0000033 ! head property_value: structure_notes "composed of lamprin, an elastin-like protein, unique to lampreys" xsd:string [Term] id: UBERON:0010898 name: gastralium def: "Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000127] synonym: "abdominal rib" EXACT [ISBN:0073040584, VSAO:curator] synonym: "belly rib" EXACT [VSAO:curator] synonym: "gastralia" EXACT OMO:0003004 [VSAO:0000127] xref: VSAO:0000127 xref: Wikipedia:Gastralium is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008907 {source="VSAO"} ! dermal bone relationship: never_in_taxon NCBITaxon:40674 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:8782 relationship: part_of UBERON:0006635 {source="ISBN:0073040584"} ! anterior abdominal wall relationship: part_of UBERON:0014478 ! rib skeletal system relationship: present_in_taxon NCBITaxon:8508 {source="Wikipedia"} property_value: taxon_notes "These bones may have been derived from the ventral scales found in animals like rhipidistians, labyrinthodonts, and Acanthostega, and may be related to ventral elements of turtle plastrons" xsd:string {source="WP"} [Term] id: UBERON:0010899 name: synchronous hermaphroditic organism def: "Hermaphroditic organism that produces both male and female gametes at the same time." [CARO:0000046] synonym: "serially hermaphroditic organism" RELATED [CARO:0000046] synonym: "simultaneous hermaphroditic organism" RELATED [https://orcid.org/0000-0002-6601-2165] xref: AAO:0010046 xref: BILA:0000046 xref: CARO:0000046 xref: HAO:0000046 xref: TADS:0000609 is_a: UBERON:0007197 {source="CARO"} ! hermaphroditic organism [Term] id: UBERON:0010900 name: tarsometatarsus cartilage element def: "A cartilaginous condensation that has the potential to develop into a tarsometatarsus." [OBOL:automatic] is_a: UBERON:0015012 ! tarsometatarsus endochondral element is_a: UBERON:0035129 ! pes cartilage element relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation [Term] id: UBERON:0010901 name: tarsometatarsus pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a tarsometatarsus." [OBOL:automatic] is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0015012 ! tarsometatarsus endochondral element [Term] id: UBERON:0010902 name: tibiotarsus cartilage element def: "A cartilaginous condensation that has the potential to develop into a tibiotarsus." [OBOL:automatic] is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015011 ! tibiotarsus endochondral element relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation [Term] id: UBERON:0010903 name: tibiotarsus pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a tibiotarsus." [OBOL:automatic] is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0015011 ! tibiotarsus endochondral element [Term] id: UBERON:0010905 name: clavicle bone primordium def: "A primordium that develops into a clavicle bone." [https://github.com/obophenotype/uberon/issues/327] comment: lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB] synonym: "clavicle primordium" EXACT [] xref: EHDAA2:0000254 is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme relationship: part_of UBERON:0007831 {source="EHDAA2"} ! pectoral girdle skeleton [Term] id: UBERON:0010907 name: parafibula def: "Third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians." [http://palaeos.com/vertebrates/glossary/glossaryP.html#P] is_a: UBERON:0004251 ! hindlimb zeugopod bone relationship: present_in_taxon NCBITaxon:9255 [Term] id: UBERON:0010908 name: paraglossale def: "An arrowhead-shaped bone in the avian hyoid apparatus which forms the base of the tongue." [http://palaeos.com/vertebrates/glossary/glossaryP.html#P] synonym: "paraglossale bone" EXACT [] is_a: UBERON:0001474 ! bone element relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] id: UBERON:0010910 name: opisthotic def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html] comment: see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." xref: AAO:0010835 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule property_value: taxon_notes "teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece" xsd:string {source="palaeos"} [Term] id: UBERON:0010911 name: ossicle def: "Skeletal element that is often isolated, small, and variable in composition." [PSPUB:0000169, VSAO:0000132] comment: Ossicles are composed of a combination skeletal tissues, including bone, calcified cartilage, hyaline cartilage, etc, and exhibit variable development across species. Ossicles are not necessarily jointed, and examples include the menisci of synovial joints, 'Panda's thumb' (radial sesamoid), cardiac skeletal elements, sclerotic bones, middle ear ossicles, and sesamoids. subset: human_reference_atlas xref: VSAO:0000132 xref: Wikipedia:Ossicles is_a: UBERON:0004765 {source="VSAO"} ! skeletal element relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010912 name: subdivision of skeleton def: "Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] subset: non_informative synonym: "skeletal subdivision" EXACT [VSAO:0000042] synonym: "subdivision of skeleton (in vivo)" RELATED [FMA:23879] xref: FMA:23879 xref: SCTID:129140006 xref: VSAO:0000042 is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0000075 {source="UBERONREF:0000003"} ! subdivision of skeletal system relationship: part_of UBERON:0004288 {source="VSAO"} ! skeleton property_value: external_definition "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000042", notes="incorrect", ontology="VSAO", source="VSAO:curator"} [Term] id: UBERON:0010913 name: vertebral element alt_id: UBERON:0015005 def: "Skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/294, VSAO:0000184] synonym: "vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "vertebra endochondral element" NARROW [https://github.com/obophenotype/uberon/issues/82] synonym: "vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "vertebral endochondral element" NARROW [https://github.com/obophenotype/uberon/issues/82] xref: VHOG:0001143 xref: VSAO:0000184 is_a: UBERON:0004765 {source="VSAO", source="https://github.com/obophenotype/uberon/issues/82"} ! skeletal element relationship: develops_from UBERON:0003089 {source="cjm"} ! sclerotome property_value: curator_notes "we include a distinct subclass for bony vertebra" xsd:string property_value: has_relational_adjective "vertebral" xsd:string property_value: homology_notes "In contrast to lampreys and jawed vertebrates, hagfishes were thought to lack vertebrae. Now, long overlooked vertebral rudiments have been analysed in hagfish, suggesting that vertebrae existed in the last common ancestor of all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001143", ontology="VHOG", source="DOI:10.1016/j.cub.2011.07.014 Janvier P, Comparative anatomy: all vertebrates do have vertebrae. Current Biology (2011)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Typically an endochondral element, in salamanders there is an argument that vertebral development is perichondral and not preformed in cartilage" xsd:string [Term] id: UBERON:0010921 name: thyrohyoid ligament xref: FMA:55135 xref: NCIT:C33779 xref: SCTID:279551000 xref: UMLS:C0225534 {source="ncithesaurus:Thyrohyoid_Ligament"} is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament [Term] id: UBERON:0010925 name: median thyrohyoid ligament def: "The middle thicker part of the thyrohyoid membrane is termed the median thyrohyoid ligament (middle hyothyroid ligament, middle thyrohyoid ligament), its lateral thinner portions are pierced by the superior laryngeal vessels and the internal branch of the superior laryngeal nerve. Its anterior surface is in relation with the Thyreohyoideus, Sternohyoideus, and Omohyoideus, and with the body of the hyoid bone." [Wikipedia:Median_thyrohyoid_ligament] synonym: "ligamentum thyrohyoideum medianum" EXACT [] synonym: "middle thyrohyoid ligament" EXACT [FMA:55138] xref: FMA:55138 xref: NCIT:C33128 xref: SCTID:279554008 xref: UMLS:C0225535 {source="ncithesaurus:Middle_Thyrohyoid_Ligament"} xref: Wikipedia:Median_thyrohyoid_ligament is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament [Term] id: UBERON:0010926 name: lateral thyrohyoid ligament def: "The lateral thyrohyoid ligament (lateral hyothyroid ligament) is a round elastic cord, which forms the posterior border of the hyothyroid membrane and passes between the tip of the superior cornu of the thyroid cartilage and the extremity of the greater cornu of the hyoid bone. The recurrent laryngeal nerve typical lies lateral to this ligament." [Wikipedia:Lateral_thyrohyoid_ligament] synonym: "ligamentum hyothyreoideum laterale" EXACT [] synonym: "ligamentum thyrohyoideum laterale" EXACT [] xref: FMA:55139 xref: NCIT:C32950 xref: SCTID:279555009 xref: UMLS:C0458565 {source="ncithesaurus:Lateral_Thyrohyoid_Ligament"} xref: Wikipedia:Lateral_thyrohyoid_ligament is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament [Term] id: UBERON:0010927 name: thyroepiglotticus muscle def: "Fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx." [http://medical-dictionary.thefreedictionary.com/thyroepiglottic+muscle, Wikipedia:Thyroepiglottic_muscle] synonym: "pars thyroepiglottica (musculus thyroarytenoideus)" EXACT [FMA:46594] synonym: "pars thyroepiglottica musculi thyroarytenoidei" RELATED OMO:0003011 [Wikipedia:Thyroepiglottic_muscle] synonym: "pars thyroepiglottica musculus thyroarytenoidei" EXACT OMO:0003011 [FMA:TA] synonym: "thyro-epiglottic part of thyro-arytenoid" EXACT [FMA:46594] synonym: "thyroepiglottic" EXACT [] synonym: "thyroepiglottic muscle" EXACT [FMA:46594] synonym: "thyroepiglotticus" EXACT [FMA:46594] synonym: "thyroepiglottus" EXACT [] synonym: "thyroepiglottus muscle" EXACT [] xref: FMA:46594 xref: NCIT:C33778 xref: SCTID:244819001 xref: UMLS:C0224182 {source="ncithesaurus:Thyroepiglottic_Muscle"} xref: Wikipedia:Thyroepiglottic_muscle is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx relationship: part_of UBERON:0008576 {source="FMA"} ! thyro-arytenoid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png" xsd:anyURI property_value: external_definition "Thexton, see notes from WG2.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_ontology_notes "not a distinct muscle in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010928 name: cricopharyngeus muscle def: "The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. (from Vagus, CN X), and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus." [MFMO:0000009] comment: muscle belly subset: human_reference_atlas synonym: "cricopharyngeal part" BROAD [] synonym: "cricopharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46661] synonym: "cricopharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46661] synonym: "cricopharyngeal part of inferior pharyngeal constrictor muscle" EXACT [] synonym: "cricopharyngeus" EXACT [FMA:46661] synonym: "cricopharyngeus portion of the inferior pharyngeal constrictor" EXACT [] synonym: "musculus cricopharyngeus" EXACT OMO:0003011 [FMA:46661, FMA:TA] synonym: "pars cricopharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46661] synonym: "pars cricopharyngea musculus constrictoris pharyngis inferioris" EXACT OMO:0003011 [FMA:TA] xref: FMA:46661 xref: MFMO:0000009 xref: NCIT:C32401 xref: SCTID:244804002 xref: UMLS:C0224214 {source="ncithesaurus:Cricopharyngeus_Muscle"} is_a: UBERON:0000933 ! chordate pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0010938 ! muscle belly relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor relationship: part_of UBERON:0007268 ! upper esophageal sphincter relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. , and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010929 name: stapedius pre-muscle condensation xref: EHDAA2:0001909 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0009506 ! mesenchyme of middle ear relationship: develops_from UBERON:0009506 {source="EHDAA2"} ! mesenchyme of middle ear [Term] id: UBERON:0010930 name: interhyoideus synonym: "interhyoideus muscle" EXACT [] xref: AAO:0010649 is_a: UBERON:0005493 ! hyoid muscle property_value: axiom_lost_from_external_ontology "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010649", ontology="AAO"} property_value: curator_notes "may be obsoleted. Muscle between hyoid arches in fish;" xsd:string property_value: external_definition "One of the principal muscles used in swallowing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010649", ontology="AAO", source="AAO:BMZ"} property_value: taxon_notes "most extant actinopterygians part of the interhyoideus separates into a distinct muscle during development, the hyohyoideus - http://www.biomedcentral.com/1471-213X/8/24/" xsd:string property_value: taxon_notes "the [mammalian] interhyoideus is homologous with the simple interhyoideus of early stages of amphibia[Edgeworth, 1935]" xsd:string [Term] id: UBERON:0010931 name: intermandibularis def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [ZFA:0000369] synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12] synonym: "intermandibularis muscle" EXACT [] xref: AAO:0010647 xref: TAO:0000369 xref: ZFA:0000369 is_a: UBERON:0001630 ! muscle organ property_value: axiom_lost_from_external_ontology "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010647", ontology="AAO"} property_value: external_definition "One of the principal muscles used in swallowing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010647", ontology="AAO", source="AAO:BMZ"} [Term] id: UBERON:0010932 name: crico-arytenoid muscle def: "Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle." [Wikipedia:Cricoarytenoid_muscle] subset: grouping_class subset: non_informative synonym: "crico-arytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle] synonym: "cricoarytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle] synonym: "cricoarytenoid muscle" EXACT [Wikipedia:Cricoarytenoid_muscle] synonym: "cricoarytenoideus" EXACT [] xref: EMAPA:37498 {source="MA:th"} xref: MA:0002283 xref: NCIT:C32398 xref: SCTID:244811003 xref: UMLS:C0448336 {source="ncithesaurus:Cricoarytenoid_Muscle"} xref: Wikipedia:Cricoarytenoid_muscle is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png" xsd:anyURI property_value: editor_note "candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/530" xsd:anyURI [Term] id: UBERON:0010933 name: orbicularis oris muscle def: "The orbicularis oris is a superficial facial muscle with fibers that encircle the opening of the oral cavity that attaches to the maxilla, mandible, skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve (CN VII)." [DOI:10.1002/ar.21355, DOI:10.1111/j.1469-7580.2009.01111.x, FEED:rd, http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop, MFMO:0000058] subset: human_reference_atlas synonym: "incisivii labii inferioris" RELATED [Wikipedia:Orbicularis_oris_muscle] synonym: "incisivii labii superioris" RELATED [Wikipedia:Orbicularis_oris_muscle] synonym: "musculus orbicularis oris" RELATED OMO:0003011 [Wikipedia:Orbicularis_oris_muscle] synonym: "nasolabialis muscle" RELATED [Wikipedia:Orbicularis_oris_muscle] synonym: "orbicularis oris" EXACT [FMA:46841] synonym: "orbicularis oris" RELATED [Wikipedia:Orbicularis_oris_muscle] xref: FMA:46841 xref: MFMO:0000058 xref: SCTID:244749008 xref: Wikipedia:Orbicularis_oris_muscle is_a: UBERON:0001577 ! facial muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/b6/Orbicularis_oris.jpg" xsd:anyURI property_value: external_definition "The orbicularis oris is a superficial facial muscle that attaches to the skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve .[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/473" xsd:anyURI [Term] id: UBERON:0010935 name: tensor tympani pre-muscle condensation xref: EHDAA2:0002002 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0009506 ! mesenchyme of middle ear relationship: develops_from UBERON:0009506 {source="EHDAA2"} ! mesenchyme of middle ear [Term] id: UBERON:0010936 name: thyropharyngeus muscle comment: muscle belly synonym: "musculus thyropharyngeus" EXACT OMO:0003011 [FMA:46658, FMA:TA] synonym: "pars thyropharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46658] synonym: "pars thyropharyngea musculus constrictoris pharyngis inferioris" EXACT OMO:0003011 [FMA:TA] synonym: "thyropharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46658] synonym: "thyropharyngeal part of inferior constrictor pharyngeus muscle" EXACT [] synonym: "thyropharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46658] synonym: "thyropharyngeus" EXACT [FMA:46658] xref: FMA:46658 xref: SCTID:244805001 is_a: UBERON:0000933 ! chordate pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0010938 ! muscle belly relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor [Term] id: UBERON:0010937 name: salpingopharyngeus muscle def: "The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus." [Wikipedia:Salpingopharyngeus_muscle] subset: human_reference_atlas synonym: "musculus salpingopharyngeus" RELATED OMO:0003011 [Wikipedia:Salpingopharyngeus_muscle] synonym: "salpingopharyngeus" EXACT [Wikipedia:Salpingopharyngeus_muscle] xref: FMA:46665 xref: NCIT:C33510 xref: SCTID:244807009 xref: UMLS:C1521985 {source="ncithesaurus:Salpingopharyngeus"} xref: Wikipedia:Salpingopharyngeus_muscle is_a: UBERON:0000933 {source="FMA"} ! chordate pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Salpingopharyngeus.png" xsd:anyURI property_value: external_definition "Salpingopharyngeus is a muscle that attaches to pharyngotympanic tube and the pharynx and is innervated by pharyngeal plexus of CN X and participates in oral/pharyngeal behaviors.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010938 name: muscle belly synonym: "belly" BROAD [FMA:9719] synonym: "belly of muscle" EXACT [] synonym: "venter" BROAD OMO:0003011 [FMA:TA] xref: FMA:9719 xref: SCTID:29823001 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001630 {source="FMA"} ! muscle organ [Term] id: UBERON:0010939 name: zygomaticomandibularis muscle synonym: "masseter, deep" RELATED [FEED:FEED] synonym: "zygomaticomandibularis" EXACT [FEED:FEED] synonym: "zygomaticomandibularis muscle" EXACT [] is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001597 ! masseter muscle property_value: external_definition "The deep masseter is a separable part of the masseter muscle that attaches to lateral surface and/or ventral border of zygomatic arch.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_definition "The zygomaticomandibularis is a separable part of the masseter muscle that attaches to the medial surface of the zygomatic arch.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010940 name: muscle of digastric group def: "Either of the two muscles that comprise the digastric group (anterior or posterior)." [http://orcid.org/0000-0002-6601-2165] synonym: "belly of digastric" NARROW [FMA:46297] synonym: "belly of digastric muscle" RELATED [FMA:46297] synonym: "digastric" RELATED [FMA:46291] synonym: "digastric belly" NARROW [FMA:46297] synonym: "digastric muscle" RELATED [Wikipedia:Digastric_muscle] synonym: "digastricus" RELATED [Wikipedia:Digastric_muscle] synonym: "muscle body proper of digastric" RELATED [FMA:46297] synonym: "musculus digastricus" RELATED OMO:0003011 [Wikipedia:Digastric_muscle] xref: FMA:46297 xref: SCTID:360772008 is_a: UBERON:0000933 ! chordate pharyngeal muscle is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0001562 ! digastric muscle group property_value: external_ontology_notes "FMA represents this as a muscle belly, but this classification does not work well across mammals (pers. comm., FEED:rd), so we classify this is a distinct muscle organ here." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010943 name: anterior digastric muscle def: "The anterior digastric is a pharyngeal arch I muscle that participates in oral/pharygeal behaviors and is innervated by the nerve to mylohyoid (a branch of the third division of the trigeminal nerve), is attached to the mandible and to the hyoid apparatus, and it is superficial to mylohyoid muscle." [http://www.feedexp.org/, MFMO:0000073] subset: feed_aligned subset: human_reference_atlas synonym: "anterior belly of digastric" EXACT [FMA:46302] synonym: "anterior belly of digastric muscle" EXACT [] synonym: "anterior digastric" EXACT [] synonym: "anterior digastric muscle" EXACT [] synonym: "digastric, anterior" EXACT [FEED:FEED] synonym: "digastricus anterior" EXACT [] synonym: "digastricus anterior belly" EXACT [] synonym: "digastricus, venter rostralis" EXACT [] synonym: "venter anterior (musculus digastricus)" EXACT [FMA:46302] synonym: "venter posterior musculus digastrici anterior" EXACT OMO:0003011 [FMA:46302, FMA:TA] xref: EMAPA:37405 {source="MA:th"} xref: FMA:46302 xref: SCTID:141804004 is_a: UBERON:0010940 ! muscle of digastric group is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: never_in_taxon NCBITaxon:9599 relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The anterior digastric is a pharyngeal arch I muscle that participates in oral/pharygeal behaviors and is innervated by the nerve to mylohyoid and superficial to mylohyoid muscle, and lacks the midline raphe.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/538" xsd:anyURI property_value: taxon_notes "absent in orangutans" xsd:string {source="DOI:10.1007/BF02547558"} [Term] id: UBERON:0010944 name: posterior digastric muscle def: "The posterior digastric is a pharyngeal arch II muscle that participates in oral pharyngeal behavior, is innervated by the digastric branch of facial nerve and attaches to the posterior cranial base and the hyoid apparatus. It is found superficial to the mylohyoid muscle." [MFMO:0000060] subset: human_reference_atlas synonym: "digastric, posterior" EXACT [FEED:FEED] synonym: "digastricus posterior" EXACT [] synonym: "digastricus posterior belly" EXACT [] synonym: "digastricus, venter caudalis" EXACT [] synonym: "m. digastricus posterior" EXACT [] synonym: "posterior belly of digastric" EXACT [FMA:46303] synonym: "posterior belly of digastric muscle" EXACT [] synonym: "posterior digastric" RELATED [] synonym: "posterior digastric muscle" EXACT [] synonym: "venter posterior musculus digastrici" EXACT OMO:0003011 [FMA:46303, FMA:TA] xref: EMAPA:37406 {source="MA:th"} xref: FMA:46303 xref: MFMO:0000060 xref: SCTID:141905002 is_a: UBERON:0001577 ! facial muscle is_a: UBERON:0010940 ! muscle of digastric group relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The posterior digastric is a pharyngeal arch II muscle that participates in oral pharyngeal behavior, is innervated by the digastric branchi of facial nerve and attaches to the posterior cranial base.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: taxon_notes "in orangutans, this muscle attaches to the mandible rather than the hyoid" xsd:string {source="DOI:10.1007/BF02547558"} [Term] id: UBERON:0010945 name: jugulohyoideus muscle def: "Runs from the processus jugularis to the os stylohyoideum; innervated with the ramus jugulohyoideus from the nervus facialis." [PMID:7839797] comment: See also: stylohyoid muscle synonym: "jugulohyoid" RELATED [] synonym: "jugulohyoideus" RELATED [] synonym: "musculus jugulohyoideus" RELATED [] synonym: "musculus occipitohyoideus" RELATED [] synonym: "occipitohyoid" RELATED [] synonym: "occipitohyoideus" RELATED [] is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0010946 name: occipitofrontalis muscle def: "The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone." [Wikipedia:Occipitofrontalis_muscle] subset: human_reference_atlas synonym: "epicranius" RELATED [Wikipedia:Occipitofrontalis_muscle] synonym: "musculus occipitofrontalis" RELATED OMO:0003011 [Wikipedia:Occipitofrontalis_muscle] synonym: "occipito-frontalis" RELATED [] synonym: "occipitofrontalis" RELATED [Wikipedia:Occipitofrontalis_muscle] xref: FMA:9624 xref: NCIT:C33198 xref: SCTID:361811007 xref: UMLS:C1518531 {source="ncithesaurus:Occipito-frontalis_Muscle"} xref: Wikipedia:Occipitofrontalis_muscle is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000033 ! head relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png" xsd:anyURI property_value: external_ontology_notes "A zone of muscle in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010947 name: occipitalis def: "A belly of the occipitofrontalis muscle that is near the occipital bone." [Wikipedia:Occipitofrontalis_muscle] synonym: "occipital belly of occipitofrontalis" EXACT [FMA:46758] synonym: "occipital part of occipitofrontalis" EXACT [FMA:46758] synonym: "venter occipitalis (musculus occipitofrontalis)" EXACT [FMA:46758] synonym: "venter transversa musculi occipitofrontalis occipitalis" EXACT OMO:0003011 [FMA:46758, FMA:TA] synonym: "venter transversa musculus occipitofrontalis occipitalis" EXACT OMO:0003011 [FMA:TA] xref: FMA:46758 xref: SCTID:21405000 xref: Wikipedia:Occipitalis_muscle is_a: UBERON:0010938 ! muscle belly relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle [Term] id: UBERON:0010948 name: cleidooccipital muscle def: "A muscle organ that attaches_to a clavicle and attaches_to a occipital bone." [OBOL:automatic] comment: Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33% synonym: "cleido-occipitalis" EXACT [] synonym: "cleido-occipitalis muscle" EXACT [] synonym: "cleidooccipital" EXACT [MA:0002276] xref: EMAPA:37688 {source="MA:th"} xref: MA:0002276 xref: NCIT:C52895 is_a: UBERON:0000933 ! chordate pharyngeal muscle is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate [Term] id: UBERON:0010949 name: sternooccipital muscle def: "A muscle organ that has_muscle_insertion a occipital bone and has_muscle_origin a sternum." [OBOL:automatic] synonym: "sternooccipital" EXACT [MA:0002385] xref: EMAPA:37702 {source="MA:th"} xref: MA:0002385 xref: NCIT:C53069 xref: UMLS:C1710196 {source="ncithesaurus:Sternooccipital"} is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0010950 name: styloauricular muscle def: "An occasional small muscle extending from the root of the styloid process to the cartilage of the meatus of the ear." [http://www.mondofacto.com/facts/dictionary?musculus+styloauricularis] synonym: "mandibulo-auricularis" EXACT [] synonym: "mandibulo-auricularis muscle" EXACT [] synonym: "stylo-auricularis" EXACT [] synonym: "stylo-auricularis muscle" EXACT [] synonym: "styloauricularis" EXACT [] is_a: UBERON:0002376 ! cranial muscle [Term] id: UBERON:0010951 name: interscutular muscle def: "A muscle that attaches to the base of the ear and to the middle of the skull." [PMID:19209956] synonym: "interscutularis" EXACT [] synonym: "musculus interscutularis" EXACT [] is_a: UBERON:0002376 ! cranial muscle [Term] id: UBERON:0010952 name: frontalis muscle belly def: "A belly of the occipitofrontalis muscle that is near the frontal bone." [Wikipedia:Occipitofrontalis_muscle] subset: pheno_slim synonym: "frontal belly of occipitofrontalis" EXACT [FMA:46757] synonym: "frontal belly of occipitofrontalis muscle" RELATED [Wikipedia:Frontalis_muscle] synonym: "frontal part of occipitofrontalis" EXACT [FMA:46757] synonym: "frontalis" EXACT [FMA:46757] synonym: "frontalis muscke" EXACT [Wikipedia:Frontalis_muscle] synonym: "orbito-temporo-auricularis" EXACT [PMID:18657257] synonym: "venter frontalis (musculus occipitofrontalis)" EXACT [FMA:46757] synonym: "venter frontalis musculi occipitofrontalis" RELATED OMO:0003011 [Wikipedia:Frontalis_muscle] synonym: "venter frontalis musculus occipitofrontalis" EXACT OMO:0003011 [FMA:TA] xref: FMA:46757 xref: SCTID:368680005 xref: Wikipedia:Frontalis_muscle is_a: UBERON:0010938 ! muscle belly relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/be/Musculus_frontalis.png" xsd:anyURI [Term] id: UBERON:0010953 name: nasalis muscle def: "The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into 'Compressor nasalis' and 'Dilator nasalis'." [Wikipedia:Nasalis_muscle] subset: human_reference_atlas synonym: "compressor naris" RELATED [Wikipedia:Nasalis_muscle] synonym: "compressor narium minor" RELATED [Wikipedia:Nasalis_muscle] synonym: "compressor nasi" RELATED [Wikipedia:Nasalis_muscle] synonym: "musculus nasalis" RELATED OMO:0003011 [Wikipedia:Nasalis_muscle] synonym: "nasalis" EXACT [FMA:46770] xref: FMA:46770 xref: SCTID:244732001 xref: Wikipedia:Nasalis_muscle is_a: UBERON:0008522 {source="FMA"} ! nasal muscle is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png" xsd:anyURI [Term] id: UBERON:0010954 name: ceratohyoideus muscle def: "The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED]." [http://www.feedexp.org] synonym: "ceratohyoideus" EXACT [FEED:FEED] xref: MFMO:0000006 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: external_definition "The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010955 name: trapezius pre-muscle mass xref: EHDAA2:0002079 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: UBERON:0010956 name: pterygopharyngeal part of superior pharyngeal constrictor synonym: "pars pterygopharyngea (musculus constrictor pharyngis superior)" EXACT [FMA:46638] synonym: "pars pterygopharyngea musculus constrictoris pharyngis superioris" EXACT OMO:0003011 [FMA:46638, FMA:TA] synonym: "pterygopharyngeal part of superior constrictor pharyngeus" EXACT [FMA:46638] synonym: "pterygopharyngeus" RELATED [] xref: FMA:46638 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006329 {source="FMA"} ! superior pharyngeal constrictor [Term] id: UBERON:0010958 name: arytenoid muscle def: "A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts." [Wikipedia:Arytenoid_muscle] synonym: "aryepiglotticus muscle" RELATED [Wikipedia:Arytenoid_muscle] synonym: "arytaenoideus" RELATED OMO:0003011 [Wikipedia:Arytenoid_muscle] synonym: "arytaenoideus muscle" RELATED [Wikipedia:Arytenoid_muscle] xref: NCIT:C32149 xref: UMLS:C1510945 {source="ncithesaurus:Arytenoid_Muscle"} xref: Wikipedia:Arytenoid_muscle is_a: UBERON:0006328 ! laryngeal intrinsic muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png" xsd:anyURI property_value: editor_note "TODO - check child relationships" xsd:string [Term] id: UBERON:0010959 name: craniocervical muscle def: "Any muscle organ that is part of either the head or the neck." [http://orcid.org/0000-0002-6601-2165] synonym: "muscle of head and neck" RELATED [] synonym: "muscle of head or neck" EXACT [] xref: NCIT:C32716 xref: UMLS:C0448281 {source="ncithesaurus:Head_and_Neck_Muscle"} is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0008229 {source="prolog"} ! craniocervical region musculature [Term] id: UBERON:0010961 name: erector spinae pre-muscle mass xref: EHDAA2:0000455 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle [Term] id: UBERON:0010962 name: extensor pre-muscle mass xref: EHDAA2:0000459 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group [Term] id: UBERON:0010963 name: trunk and cervical myotome group comment: isa row in EHDAA2 xref: EHDAA2:0003425 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme [Term] id: UBERON:0010970 name: intercostal pre-muscle mass xref: EHDAA2:0000843 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:8450004 ! intercostal element relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle [Term] id: UBERON:0010974 name: external intercostal pre-muscle mass xref: EHDAA2:0000467 is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass [Term] id: UBERON:0010975 name: external oblique pre-muscle mass xref: EHDAA2:0000470 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme relationship: part_of UBERON:0002461 {source="EHDAA2"} ! anterior abdominal wall muscle [Term] id: UBERON:0010977 name: flexor pre-muscle mass xref: EHDAA2:0000543 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group [Term] id: UBERON:0010981 name: internal intercostal pre-muscle mass xref: EHDAA2:0000876 is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass [Term] id: UBERON:0010982 name: latissimus dorsi pre-muscle mass xref: EHDAA2:0000933 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: UBERON:0010983 name: levator scapulae pre-muscle mass xref: EHDAA2:0000993 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: UBERON:0010984 name: pectoral pre-muscle mass xref: EHDAA2:0001423 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: UBERON:0010985 name: rhomboid pre-muscle mass xref: EHDAA2:0001636 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: UBERON:0010986 name: serratus ventralis pre-muscle mass synonym: "serratus anterior pre-muscle mass" EXACT [EHDAA2:0001833] xref: EHDAA2:0001833 xref: EHDAA:5992 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle [Term] id: UBERON:0010987 name: sterno-mastoid pre-muscle mass xref: EHDAA2:0001913 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm relationship: part_of UBERON:0002376 {source="EHDAA2"} ! cranial muscle [Term] id: UBERON:0010988 name: teres major pre-muscle mass xref: EHDAA2:0002005 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: UBERON:0010989 name: transverospinalis pre-muscle mass def: "A pre-muscle condensation that will develop into a transverospinalis muscle." [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0002076 is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group [Term] id: UBERON:0010990 name: transversospinales muscle def: "The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum." [Wikipedia:Transversospinales_muscles] subset: human_reference_atlas synonym: "deep dorsal muscles" RELATED [Wikipedia:Transversospinales_muscles] synonym: "musculi transversospinales" RELATED OMO:0003011 [FMA:TA, Wikipedia:Transversospinales_muscles] synonym: "transverospinalis" EXACT [EHDAA2:0002075] synonym: "transversospinal group of muscles" RELATED [Wikipedia:Transversospinales_muscles] synonym: "transversospinales" RELATED [FMA:71304] synonym: "transversospinales muscle group" RELATED [FMA:71304] xref: EHDAA2:0002075 xref: EHDAA:9465 xref: FMA:71304 xref: SCTID:244866002 xref: Wikipedia:Transversospinales_muscles is_a: UBERON:0003897 {source="EHDAA2"} ! axial muscle relationship: develops_from UBERON:0010989 {source="EHDAA2"} ! transverospinalis pre-muscle mass relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png" xsd:anyURI [Term] id: UBERON:0010993 name: subscapularis pre-muscle mass xref: EMAPA:17750 is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group [Term] id: UBERON:0010994 name: coronoid process of ulna def: "A triangular eminence projecting forward from the proximal epiphysis of the ulna[WP,modified]." [Wikipedia:Coronoid_process_of_the_ulna] subset: human_reference_atlas synonym: "coronoid process" BROAD [FMA:23616] synonym: "coronoid process of the ulna" EXACT [Wikipedia:Coronoid_process_of_the_ulna] synonym: "processus coronoideus" EXACT [FMA:23616] synonym: "processus coronoideus ulnae" RELATED OMO:0003011 [Wikipedia:Coronoid_process_of_the_ulna] synonym: "ulnar coronoid process" EXACT [] xref: FMA:23616 xref: SCTID:181951002 xref: Wikipedia:Coronoid_process_of_the_ulna is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006822 {source="FMA"} ! proximal epiphysis of ulna relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png" xsd:anyURI [Term] id: UBERON:0010995 name: deep part of masseter muscle subset: human_reference_atlas synonym: "deep layer of masseter" EXACT [FMA:49003] synonym: "deep part of masseter" EXACT [FMA:49003] synonym: "masseter, deep" EXACT [] synonym: "masseter, profundus" EXACT [FEED:FEED] synonym: "pars profunda (musculus masseter)" EXACT [FMA:49003] synonym: "pars profunda musculus masseterica" EXACT OMO:0003011 [FMA:49003, FMA:TA] synonym: "pars profunda of masseter muscle" EXACT [] xref: FMA:49003 xref: SCTID:142309002 is_a: UBERON:0000064 ! organ part relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0010996 name: articular cartilage of joint def: "A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints." [BTO:0001572] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "articular cartilage" EXACT [MA:0000487] synonym: "cartilago articularis" EXACT [FMA:12264] synonym: "hyaline cartilage" RELATED [BTO:0001572] synonym: "joint-associated cartilage" RELATED [AEO:0000179] xref: AEO:0000179 xref: BTO:0001572 xref: CALOHA:TS-0055 xref: EFO:0001902 xref: EMAPA:35149 xref: FMA:12264 xref: GAID:101 xref: galen:ArticularCartilage xref: MA:0000487 xref: MESH:D002358 xref: NCIT:C32144 xref: SCTID:305026006 xref: UMLS:C0007303 {source="ncithesaurus:Articular_Cartilage"} is_a: UBERON:0001994 {source="MA"} ! hyaline cartilage tissue relationship: part_of UBERON:0002217 {source="Wikipedia"} ! synovial joint relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011002 name: articular cartilage element def: "Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone." [ZFA:0001644] synonym: "articular cartilages" BROAD OMO:0003004 [ZFA:0001644] xref: TAO:0001670 xref: ZFA:0001644 is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage [Term] id: UBERON:0011004 name: pharyngeal arch cartilage def: "A cartilage element that is part of a splanchnocranium." [OBOL:automatic] subset: efo_slim synonym: "pharyngeal arch cartilages" EXACT OMO:0003004 [ZFA:0001460] synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460] xref: BTO:0006051 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003689 xref: TAO:0001460 xref: ZFA:0001460 is_a: UBERON:0003933 {source="ZFA"} ! cranial cartilage relationship: develops_from UBERON:0002539 ! pharyngeal arch relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium [Term] id: UBERON:0011005 name: endocardium of auricle def: "An endocardium that is part of a atrium auricular region." [OBOL:automatic] synonym: "auricle endocardium" EXACT [FMA:13234] xref: FMA:13234 is_a: UBERON:0002166 ! endocardium of atrium relationship: part_of UBERON:0006618 ! atrium auricular region property_value: external_ontology_notes "EHDAA2 this is an epithelium that is part of the endocardium" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0011006 name: endocardium of left auricle def: "An endocardium that is part of a left atrium auricular region." [OBOL:automatic] synonym: "left atrium auricular region endocardium" EXACT [EHDAA2:0000277] synonym: "left auricle endocardial tissue" RELATED [VHOG:0001231] synonym: "left auricle endocardium" EXACT [FMA:13236] xref: EHDAA2:0000277 xref: FMA:13236 xref: VHOG:0001231 is_a: UBERON:0011005 ! endocardium of auricle is_a: UBERON:0034903 ! left atrium endocardium relationship: part_of UBERON:0006630 ! left atrium auricular region [Term] id: UBERON:0011007 name: endocardium of right auricle def: "An endocardium that is part of a right atrium auricular region." [OBOL:automatic] synonym: "right auricle endocardium" EXACT [FMA:13235] xref: EHDAA2:0000292 xref: FMA:13235 is_a: UBERON:0009129 ! right atrium endocardium is_a: UBERON:0011005 ! endocardium of auricle relationship: part_of UBERON:0006631 ! right atrium auricular region [Term] id: UBERON:0011011 name: brachioradialis def: "Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm. It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus." [Wikipedia:Brachioradialis] subset: human_reference_atlas synonym: "brachioradialis muscle" EXACT [Wikipedia:Brachioradialis] synonym: "musculus brachioradialis" RELATED OMO:0003011 [Wikipedia:Brachioradialis] xref: FMA:38485 xref: SCTID:244989009 xref: Wikipedia:Brachioradialis is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0001499 ! muscle of arm relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Brachioradialis.png" xsd:anyURI [Term] id: UBERON:0011012 name: flexor pollicis brevis muscle def: "The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part." [Wikipedia:Flexor_pollicis_brevis_muscle] subset: human_reference_atlas synonym: "flexor pollicis brevis" EXACT [FMA:37378] synonym: "musculus flexor pollicis brevis" RELATED OMO:0003011 [Wikipedia:Flexor_pollicis_brevis_muscle] xref: FMA:37378 xref: SCTID:181646006 xref: Wikipedia:Flexor_pollicis_brevis_muscle is_a: UBERON:0001500 ! muscle of manus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Musculusflexorpollicisbrevis.png" xsd:anyURI [Term] id: UBERON:0011013 name: spinalis muscle def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [Wikipedia:Spinalis] synonym: "medial column of erector spinae" RELATED [] synonym: "musculus spinalis" RELATED OMO:0003011 [Wikipedia:Spinalis] synonym: "spinal muscle" EXACT [BTO:0002621] synonym: "spinalis" EXACT [FMA:77179] synonym: "spinalis muscle" RELATED [Wikipedia:Spinalis] xref: BTO:0002621 xref: FMA:77179 xref: SCTID:244862000 xref: Wikipedia:Spinalis is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column relationship: part_of UBERON:0002462 {source="BTO"} ! erector spinae muscle group property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a4/Spinalis.png" xsd:anyURI [Term] id: UBERON:0011014 name: spinalis capitis muscle def: "Origin: spines of upper thoracic and lower cervical vertebrae; insertion: occipital bone; innervation: spinal nerves; action, extends head." [BTO:0002622] subset: human_reference_atlas synonym: "musculus spinalis capitis" RELATED [BTO:0002622] synonym: "spinal muscle of head" EXACT [BTO:0002622] synonym: "spinalis capitis" EXACT [FMA:22775] xref: BTO:0002622 xref: FMA:22775 xref: SCTID:244865003 is_a: UBERON:0011013 {source="FMA"} ! spinalis muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011015 name: iliac fossa xref: FMA:75316 xref: NCIT:C103454 xref: SCTID:182341009 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:0011016 name: pyramidalis def: "The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath." [Wikipedia:Pyramidalis_muscle] subset: human_reference_atlas synonym: "musculus pyramidalis" RELATED OMO:0003011 [Wikipedia:Pyramidalis_muscle] synonym: "pyramidalis" RELATED [Wikipedia:Pyramidalis_muscle] synonym: "pyramidalis muscle" EXACT [FMA:15568] xref: FMA:15568 xref: NCIT:C33438 xref: SCTID:244950003 xref: UMLS:C0224374 {source="ncithesaurus:Pyramidalis"} xref: Wikipedia:Pyramidalis_muscle is_a: UBERON:0002461 {source="FMA"} ! anterior abdominal wall muscle relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray397.png" xsd:anyURI [Term] id: UBERON:0011017 name: semispinalis muscle def: "A transversospinalis muscle of the human body." [Wikipedia:Semispinalis_muscle] synonym: "semispinalis" EXACT [Wikipedia:Semispinalis_muscle] xref: FMA:22823 xref: SCTID:244867006 xref: Wikipedia:Semispinalis_muscle is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column [Term] id: UBERON:0011022 name: flexor hallucis brevis muscle def: "A muscle that originates from the cuboid bone and divides into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion." [Wikipedia:Flexor_hallucis_brevis_muscle] subset: human_reference_atlas synonym: "flexor digit I brevis" RELATED [EMAPA:36259] synonym: "flexor hallucis brevis" EXACT [FMA:37449] synonym: "flexor hallucis brevis muscle" EXACT [Wikipedia:Flexor_hallucis_brevis_muscle] synonym: "m.flexor hallucis brevis" EXACT [FMA:37449] synonym: "musculus flexor hallucis brevis" RELATED OMO:0003011 [Wikipedia:Flexor_hallucis_brevis_muscle] xref: EMAPA:36259 xref: FMA:37449 xref: SCTID:181730007 xref: Wikipedia:Flexor_hallucis_brevis_muscle is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Musculus_flexor_hallucis_brevis.png" xsd:anyURI [Term] id: UBERON:0011024 name: extrinsic extensor muscle of manus def: "The extrinsic extensor muscles of the hand are located in the back of the forearm and have long tendons connecting them to bones in the hand, where they exert their action." [Wikipedia:Extrinsic_extensor_muscles_of_the_hand] synonym: "extrinsic extensor muscle of hand" EXACT [Wikipedia:Extrinsic_extensor_muscles_of_the_hand] xref: Wikipedia:Extrinsic_extensor_muscles_of_the_hand is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0004254 ! forelimb zeugopod muscle [Term] id: UBERON:0011025 name: aryepiglotticus muscle def: "The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis." [Wikipedia:Aryepiglottic_muscle] synonym: "ary-epiglottic part of oblique arytenoid" EXACT [FMA:46602] synonym: "aryepiglottic" EXACT [] synonym: "aryepiglottic muscle" EXACT [FMA:46602] synonym: "aryepiglotticus" EXACT [Wikipedia:Aryepiglottic_muscle] synonym: "aryepiglottus" EXACT [FEED:FEED] synonym: "aryepiglottus muscle" EXACT [FEED:FEED] synonym: "musculus aryepiglotticus" RELATED OMO:0003011 [Wikipedia:Aryepiglottic_muscle] synonym: "pars aryepiglottica (musculus arytenoideus obliquus)" EXACT [FMA:46602] synonym: "pars aryepiglottica musculi arytenoidei obliqui" RELATED OMO:0003011 [Wikipedia:Aryepiglottic_muscle] synonym: "pars aryepiglottica musculus arytenoidei obliqui" EXACT OMO:0003011 [FMA:TA] xref: FMA:46602 xref: NCIT:C32146 xref: SCTID:244818009 xref: UMLS:C0224177 {source="ncithesaurus:Aryepiglottic_Muscle"} xref: Wikipedia:Aryepiglottic_muscle is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx relationship: part_of UBERON:0008575 {source="FMA"} ! oblique arytenoid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png" xsd:anyURI [Term] id: UBERON:0011043 name: obturator muscle def: "One of: obturator externus or obturator internus." [Wikipedia:Obturator_muscles] synonym: "obturator" BROAD [] xref: EMAPA:36235 xref: FMA:19083 xref: NCIT:C33193 xref: SCTID:245024007 xref: UMLS:C0224421 {source="ncithesaurus:Obturator_Muscle"} xref: Wikipedia:Obturator_muscles is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle [Term] id: UBERON:0011048 name: obturator internus def: "The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum." [Wikipedia:Obturator_internus_muscle] synonym: "internal obturator" EXACT [FMA:22298] synonym: "internus obturator" RELATED [Wikipedia:Obturator_internus_muscle] synonym: "musculus obturator internus" EXACT [FMA:22298] synonym: "musculus obturatorius internus" RELATED OMO:0003011 [Wikipedia:Obturator_internus_muscle] synonym: "obturator internus muscle" RELATED [Wikipedia:Obturator_internus_muscle] synonym: "obturatorius internus" RELATED [Wikipedia:Obturator_internus_muscle] xref: AAO:0010052 xref: EMAPA:36237 xref: FMA:22298 xref: NCIT:C33192 xref: SCTID:245025008 xref: UMLS:C1518529 {source="ncithesaurus:Obturator_Internus_Muscle"} xref: Wikipedia:Obturator_internus_muscle is_a: UBERON:0011043 {source="FMA"} ! obturator muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG" xsd:anyURI property_value: external_definition "Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010052", ontology="AAO", source="AAO:EJS"} property_value: external_ontology_notes "Definition generalized to accommodate AAO class - 'Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.' [AAO:0010052]" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0011049 name: uterovesical pouch def: "The peritoneum over the rectum and the bladder is continued over the intestinal surface and fundus of the uterus on to its vesical surface, which it covers as far as the junction of the body and cervix uteri, and then to the bladder, forming here a second, but shallower, pouch, the vesicouterine excavation (or uterovesical pouch). The vesicouterine excavation is close to the anterior fornix of the vagina." [Wikipedia:Vesico-uterine_pouch] synonym: "excavatio vesico-uterina" EXACT [FMA:14729] synonym: "excavatio vesicouterina" EXACT OMO:0003011 [FMA:TA] synonym: "excavatio vesicouterina" RELATED OMO:0003011 [Wikipedia:Vesico-uterine_pouch] synonym: "excavatio vesiocuterina" RELATED [Wikipedia:Vesico-uterine_pouch] synonym: "vesico-uterine pouch" EXACT [FMA:14729] synonym: "vesicouterine" RELATED [Wikipedia:Vesico-uterine_pouch] synonym: "vesicouterine excavation" RELATED [Wikipedia:Vesico-uterine_pouch] synonym: "vesicouterine pouch" EXACT [FMA:14729] synonym: "vesicouterine pouch" RELATED [Wikipedia:Vesico-uterine_pouch] xref: FMA:14729 xref: NCIT:C33843 xref: SCTID:249806003 xref: UMLS:C1519874 {source="ncithesaurus:Utero-Vesical_Pouch"} xref: Wikipedia:Vesico-uterine_pouch is_a: UBERON:0034696 ! fold of peritoneum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/51/WeiblichesBeckenMedian.gif" xsd:anyURI [Term] id: UBERON:0011050 name: thoracic vertebra 8 def: "The eighth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T8_Vertebra] subset: human_reference_atlas synonym: "eighth dorsal vertebra" EXACT [FMA:9991] synonym: "eighth thoracic vertebra" EXACT [FMA:9991] synonym: "T8 vertebra" EXACT [FMA:9991] xref: EMAPA:19549 xref: FMA:9991 xref: MA:0001445 xref: NCIT:C33730 xref: SCTID:181836007 xref: UMLS:C0459953 {source="ncithesaurus:T8_Vertebra"} is_a: UBERON:0002347 {source="MA"} ! thoracic vertebra relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011060 name: perilymphatic channel def: "A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space." [MESH:A09.246.631.246.280, Wikipedia:Perilymphatic_duct] synonym: "cochlear aqueduct" RELATED [FMA:77822, MESH:A09.246.631.246.280] synonym: "ductus perilymphaticus" EXACT [AAO:0000136] synonym: "perilymphatic duct" RELATED [MESH:A09.246.631.246.280] synonym: "perilymphatic space" RELATED [MA:0000248] xref: AAO:0000136 xref: EMAPA:35677 xref: FMA:77822 xref: MA:0000248 xref: SCTID:368950002 xref: Wikipedia:Perilymphatic_duct xref: ZFA:0005461 is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0001846 {source="MA"} ! internal ear property_value: editor_note "relationship to FMA class unclear" xsd:string property_value: external_definition "Duct that contains perilymph[ZFA:0005461, ZFIN:curator]." xsd:string {source="ZFA:0005461, ZFIN:curator"} [Term] id: UBERON:0011078 name: endolymphatic space def: "Endolymph-filled space contained by the membranous labyrinth." [http://medical-dictionary.thefreedictionary.com/endolymphatic+space] xref: FMA:77823 xref: SCTID:279856000 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth relationship: part_of UBERON:0002295 ! scala media property_value: has_relational_adjective "endolymphatic" xsd:string [Term] id: UBERON:0011079 name: angular bone def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:0001669, Wikipedia:Angular_bone] synonym: "angular" BROAD [AAO:0000010] synonym: "angular bones" RELATED OMO:0003004 [ZFA:0001645] synonym: "postoperculare" RELATED [AAO:0000010] synonym: "praearticulare" RELATED [AAO:0000010] xref: AAO:0000010 xref: TAO:0001669 xref: Wikipedia:Angular_bone xref: ZFA:0001645 is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 {source="TAO"} ! dermal bone is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium property_value: taxon_notes "The angular fuses with the articular bone in clupeocephalans forming the anguloarticular." xsd:string [Term] id: UBERON:0011085 name: palatoquadrate arch def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw[ZFIN,VHOG]." [https://github.com/obophenotype/uberon/issues/153, VHOG:0000511] subset: efo_slim synonym: "dorsal mandibular arch" RELATED [VHOG:0000511] synonym: "dorsal pharyngeal arch 1" RELATED [VHOG:0000511] synonym: "dorsal visceral arch 1" EXACT [ZFA:0001272] synonym: "dorsal visceral arch 1" RELATED [VHOG:0000511] synonym: "palatoquadrate arch" RELATED [VHOG:0000511] synonym: "upper jaw" RELATED [VHOG:0000511] synonym: "upper pharyngeal jaw" EXACT [ZFA:0001272] synonym: "upper pharyngeal jaw" RELATED [VHOG:0000511] xref: EFO:0003659 xref: TAO:0001272 xref: ZFA:0001272 is_a: UBERON:0010912 {source="cjm"} ! subdivision of skeleton relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 relationship: part_of UBERON:0003277 ! skeleton of upper jaw relationship: part_of UBERON:0008895 {source="VHOG"} ! splanchnocranium property_value: homology_notes "Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000511", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011087 name: pharyngeal arch 7 synonym: "branchial arch 5" RELATED [ZFA:0001610] synonym: "gill arch 5" EXACT [ZFA:0001610] synonym: "visceral arch 7" EXACT [ZFA:0001610] xref: TAO:0001602 xref: ZFA:0001610 is_a: UBERON:0008896 {source="ZFA"} ! post-hyoid pharyngeal arch property_value: pharyngeal_arch_number "7" xsd:nonNegativeInteger [Term] id: UBERON:0011088 name: ligament of knee joint def: "A ligament that is part of a knee joint." [OBOL:automatic] synonym: "knee joint ligament" EXACT [FMA:44580] xref: FMA:44580 xref: SCTID:182440009 is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0011090 name: skeleton of right pelvic girdle def: "A skeleton of pelvic girdle that is part of a right pelvic girdle region." [OBOL:automatic] xref: FMA:87593 is_a: UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0011092 ! right pelvic girdle region [Term] id: UBERON:0011091 name: skeleton of left pelvic girdle def: "A skeleton of pelvic girdle that is part of a left pelvic girdle region." [OBOL:automatic] xref: FMA:87594 is_a: UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0011093 ! left pelvic girdle region [Term] id: UBERON:0011092 name: right pelvic girdle region def: "A pelvic girdle region that is in the right side of a multicellular organism." [OBOL:automatic] synonym: "right pelvic girdle" EXACT INCONSISTENT [FMA:16582] xref: FMA:16582 is_a: UBERON:0001271 ! pelvic girdle region property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0011093 name: left pelvic girdle region def: "A pelvic girdle region that is in the left side of a multicellular organism." [OBOL:automatic] synonym: "left pelvic girdle" EXACT INCONSISTENT [FMA:16583] xref: FMA:16583 is_a: UBERON:0001271 ! pelvic girdle region property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0011094 name: vertebra cartilage element def: "The cartilaginous form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] synonym: "vertebral cartilage condensation" EXACT [VHOG:0000584] xref: EMAPA:32669 xref: VHOG:0000584 is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0010913 ! vertebral element relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation relationship: present_in_taxon NCBITaxon:7764 {notes="vertebra-like cartilage in hagfish are homologous to gnathostome vertebrae. mesenchymal cells express Pax1/9 and Twist", source="PMC3157150"} property_value: external_ontology_notes "This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0011095 name: vertebra pre-cartilage condensation def: "The pre-cartilaginous form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] xref: EMAPA:32671 xref: VHOG:0000582 is_a: UBERON:0010913 ! vertebral element [Term] id: UBERON:0011096 name: lacrimal nerve def: "The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve." [Wikipedia:Lacrimal_nerve] subset: human_reference_atlas synonym: "nervus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_nerve] xref: FMA:52628 xref: NCIT:C32908 xref: SCTID:280218007 xref: Wikipedia:Lacrimal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011104 name: epiphysis of fifth metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 5." [OBOL:automatic] synonym: "fifth metacarpal bone epiphysis" EXACT [FMA:86330] synonym: "metacarpal 5 epiphysis" EXACT [] xref: FMA:86330 is_a: UBERON:0004390 ! epiphysis of metacarpal bone relationship: part_of UBERON:0003649 ! metacarpal bone of digit 5 [Term] id: UBERON:0011106 name: cruciate ligament of atlas def: "A cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below." [Wikipedia:Cruciate_ligament_of_the_dens] synonym: "cruciate ligament of dens" EXACT [Wikipedia:Cruciate_ligament_of_the_dens] synonym: "cruciform ligament of atlas" EXACT [FMA:25018] synonym: "cruciform ligament of dens" EXACT [Wikipedia:Cruciate_ligament_of_the_dens] synonym: "ligamentum cruciforme atlantis" EXACT OMO:0003011 [Wikipedia:Cruciate_ligament_of_the_dens] synonym: "triradiate ligament" RELATED [EMAPA:19010] xref: EMAPA:19010 xref: FMA:25018 xref: SCTID:182362005 xref: Wikipedia:Cruciate_ligament_of_the_dens is_a: UBERON:0000211 ! ligament is_a: UBERON:0005174 ! dorsal region element relationship: part_of UBERON:0000220 {inconsistent_with="Wikipedia", source="FMA"} ! atlanto-occipital joint [Term] id: UBERON:0011107 name: synovial joint of pelvic girdle def: "A synovial joint that is part of a pelvic girdle region." [OBOL:automatic] synonym: "joint of pelvic girdle" EXACT [] synonym: "pelvic girdle joint" EXACT [FMA:35173] xref: FMA:35173 xref: NCIT:C32890 xref: UMLS:C0827002 {source="ncithesaurus:Joint_of_the_Pelvic_Girdle"} is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0008114 ! joint of girdle relationship: part_of UBERON:0001271 ! pelvic girdle region [Term] id: UBERON:0011108 name: synovial joint of pectoral girdle def: "A synovial joint that is part of a pectoral girdle region." [OBOL:automatic] synonym: "joint of shoulder girdle" EXACT [] synonym: "pectoral girdle joint" EXACT [FMA:35243] xref: FMA:35243 xref: SCTID:303080001 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0008114 ! joint of girdle relationship: part_of UBERON:0001421 ! pectoral girdle region property_value: external_ontology_notes "in FMA, these are part of the bony pectoral girdle" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011110 name: humeroulnar joint def: "The humeroulnar joint, is part of the elbow-joint or the Olecron Joint, between the ulna and humerus bones is the simple hinge-joint, which allows for movements of flexion, extension and circumduction. The Humero-Ulnar Joint is the junction of trochlear notch of the ulna and the trochlea of the humerus. Owing to the obliquity of the trochlea of the humerus, this movement does not take place in the antero-posterior plane of the body of the humerus. When the forearm is extended and supinated, the axis of the arm and forearm are not in the same line; the arm forms an obtuse angle with the forearm. During flexion, however, the forearm and the hand tend to approach the middle line of the body, and thus enable the hand to be easily carried to the face. The accurate adaptation of the trochlea of the humerus, with its prominences and depressions, to the semilunar notch of the ulna, prevents any lateral movement. Flexion is produced by the action of the Biceps brachii and Brachialis, assisted by the Brachioradialis, with a tiny contribution from the muscles arising from the medial epicondyle of the humerus. Extension is produced by the Triceps brachii and AnconC&us, with a tiny contribution from the muscles arising from the lateral epicondyle of the humerus, such as the Extensor digitorum communis." [Wikipedia:Humeroulnar_joint] subset: pheno_slim synonym: "articulatio humeroulnaris" EXACT OMO:0003011 [FMA:TA] synonym: "humero-ulnar joint" EXACT [FMA:38854] xref: FMA:38854 xref: SCTID:303064006 xref: Wikipedia:Humeroulnar_joint is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0011139 ! synovial limb joint relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png" xsd:anyURI [Term] id: UBERON:0011111 name: humeroradial joint def: "A hinge joint between the head of the radius and the capitulum of the humerus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Humeroradial_joint] subset: pheno_slim synonym: "articulatio humeroradialis" EXACT OMO:0003011 [Wikipedia:Humeroradial_joint] synonym: "humero-radial joint" EXACT [] xref: FMA:38855 xref: SCTID:182171008 xref: Wikipedia:Humeroradial_joint is_a: UBERON:0003839 ! forelimb joint relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png" xsd:anyURI [Term] id: UBERON:0011112 name: tibiofibular joint def: "A joint that connects the tibia and the fibula." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Tibiofibular_joint] synonym: "fibulatibial joint" EXACT [] synonym: "fibulotibial joint" EXACT [] synonym: "tibiafibular joint" EXACT [] xref: FMA:35181 xref: SCTID:244554002 xref: Wikipedia:Tibiofibular_joint is_a: UBERON:0002210 {source="FMA"} ! syndesmosis is_a: UBERON:0003840 ! hindlimb joint relationship: part_of UBERON:0003823 ! hindlimb zeugopod property_value: editor_note "we include location as part of the logical definition to prevent accidental classification of ankle joints as tibiofibular joints" xsd:string [Term] id: UBERON:0011113 name: inferior tibiofibular joint def: "The inferior tibiofibular articulation (tibiofibular syndesmosis) is formed by the rough, convex surface of the medial side of the lower end of the fibula, and a rough concave surface on the lateral side of the tibia. Below, to the extent of about 4 mm. these surfaces are smooth, and covered with cartilage, which is continuous with that of the ankle-joint. The ligaments are: Anterior ligament of the lateral malleolus, Posterior ligament of the lateral malleolus, Inferior transverse ligament of the tibiofibular syndesmosis, Interosseous ligament." [Wikipedia:Inferior_tibiofibular_articulation] synonym: "distal tibiofibular joint" EXACT [FMA:10465] synonym: "inferior tibiofibular articulation" RELATED [Wikipedia:Inferior_tibiofibular_articulation] synonym: "syndesmosis tibiofibularis" EXACT OMO:0003011 [FMA:TA] synonym: "tibiofibular syndesmosis" EXACT [FMA:10465] xref: FMA:10465 xref: SCTID:182209000 xref: Wikipedia:Inferior_tibiofibular_articulation is_a: UBERON:0011112 {source="FMA"} ! tibiofibular joint [Term] id: UBERON:0011117 name: superior tibiofibular joint def: "The superior tibiofibular articulation is an arthrodial joint between the lateral condyle of the tibia and the head of the fibula. The contiguous surfaces of the bones present flat, oval facets covered with cartilage and connected together by an articular capsule and by anterior and posterior ligaments. When the term 'tibiofibular articulation' is used without a modifier, it refers to the superior, and not the inferior tibiofibular articulation." [Wikipedia:Superior_tibiofibular_joint] synonym: "articulatio tibiofibularis" RELATED OMO:0003011 [Wikipedia:Superior_tibiofibular_joint] synonym: "proximal tibiofibular joint" EXACT [FMA:35184] synonym: "proximal tibiofibular joint" RELATED [Wikipedia:Superior_tibiofibular_joint] synonym: "proximal tibiofibular syndesmosis" RELATED [FMA:35184] synonym: "superior tibiofibular articulation" RELATED [Wikipedia:Superior_tibiofibular_joint] synonym: "tibiofibular joint" BROAD [Wikipedia:Superior_tibiofibular_joint] xref: FMA:35184 xref: MESH:D007719 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:182208008 xref: Wikipedia:Superior_tibiofibular_joint is_a: UBERON:0011112 ! tibiofibular joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a8/Gray347.png" xsd:anyURI [Term] id: UBERON:0011118 name: tarsometatarsal joint def: "The tarsometatarsal articulations are arthrodial joints in the pes." [Wikipedia:Tarsometatarsal_articulations] subset: pheno_slim synonym: "articulationes tarsometatarsales" RELATED OMO:0003011 [Wikipedia:Tarsometatarsal_articulations] synonym: "cuboideometatarsal" RELATED [Wikipedia:Tarsometatarsal_articulations] synonym: "Lisfranc joint" RELATED [Wikipedia:Tarsometatarsal_articulations] synonym: "tarso-metatarsal join" EXACT [] synonym: "tarsometatarsal" RELATED [Wikipedia:Tarsometatarsal_articulations] synonym: "tarsometatarsal articulation" RELATED [Wikipedia:Tarsometatarsal_articulations] xref: FMA:35216 xref: SCTID:182222008 xref: Wikipedia:Tarsometatarsal_articulations is_a: UBERON:0001487 ! pes joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray355.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png" xsd:anyURI [Term] id: UBERON:0011119 name: carpometacarpal joint def: "The carpometacarpal joints (CMC) are joints in the wrist that articulates the distal row of carpal bones and the proximal bases of the metacarpal bones." [Wikipedia:Carpometacarpal_joint] synonym: "articulationes carpometacarpeæ" EXACT OMO:0003011 [Wikipedia:Carpometacarpal_joint] synonym: "carpometacarpal" BROAD [Wikipedia:Carpometacarpal_joint] synonym: "carpometacarpal articulation" RELATED [Wikipedia:Carpometacarpal_joint] synonym: "CMJ" BROAD [Wikipedia:Carpometacarpal_joint] xref: FMA:35287 xref: MESH:D052737 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32265 xref: SCTID:361842002 xref: UMLS:C0224620 {source="ncithesaurus:Carpometacarpal_Joint"} xref: Wikipedia:Carpometacarpal_joint is_a: UBERON:0001489 ! manus joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray335.png" xsd:anyURI [Term] id: UBERON:0011120 name: laryngeal joint def: "A skeletal joint that connects a laryngeal cartilage." [OBOL:automatic] synonym: "joint of larynx" EXACT [FMA:55100] synonym: "laryngeal articulation" EXACT [FMA:55100] xref: FMA:55100 is_a: UBERON:0002217 {source="FMA"} ! synovial joint relationship: part_of UBERON:0010323 ! cranial skeletal system [Term] id: UBERON:0011121 name: cricothyroid joint def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the thyroid cartilage." [Wikipedia:Cricothyroid_articulation] synonym: "crico-thyroid joint" RELATED [Wikipedia:Cricothyroid_articulation] synonym: "cricothyroid articulation" EXACT [FMA:55101] xref: FMA:55101 xref: NCIT:C32402 xref: SCTID:361944002 xref: UMLS:C0225540 {source="ncithesaurus:Cricothyroid_Joint"} xref: Wikipedia:Cricothyroid_articulation is_a: UBERON:0011120 {source="FMA"} ! laryngeal joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI [Term] id: UBERON:0011122 name: cricoarytenoid joint def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the arytenoid cartilage." [Wikipedia:Cricoarytenoid_articulation] synonym: "crico-arytenoid joint" EXACT [FMA:55102] synonym: "crico-arytenoid joint" RELATED [Wikipedia:Cricoarytenoid_articulation] synonym: "cricoarytenoid articulation" EXACT [FMA:55102] xref: FMA:55102 xref: NCIT:C32397 xref: SCTID:361945001 xref: UMLS:C0225555 {source="ncithesaurus:Cricoarytenoid_Joint"} xref: Wikipedia:Cricoarytenoid_articulation is_a: UBERON:0011120 {source="FMA"} ! laryngeal joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray960.png" xsd:anyURI [Term] id: UBERON:0011123 name: stifle joint def: "A complex joint in the hind limbs of quadruped mammals such as the sheep, horse or dog. It is the equivalent joint to the human knee. It is often the largest synovial joint in the body." [Wikipedia:Stifle_joint] synonym: "femoropatellar joint" RELATED [] xref: MESH:D013264 xref: NCIT:C98784 xref: SCTID:116010006 xref: UMLS:C1456798 {source="ncithesaurus:Stifle_Joint"} xref: Wikipedia:Stifle_joint is_a: UBERON:0001485 ! knee joint relationship: never_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011124 name: xiphisternal joint def: "The xiphisternal joint (or xiphisternal synchondrosis) is a location near the bottom of the sternum, where the body of the sternum and the xiphoid process." [Wikipedia:Xiphisternal_joint] synonym: "synchondrosis xiphisternalis" EXACT [FMA:7503] synonym: "xiphisternal junction" RELATED [Wikipedia:Xiphisternal_joint] synonym: "xiphisternal synchdrondosis" RELATED [Wikipedia:Xiphisternal_joint] xref: FMA:7503 xref: SCTID:118923007 xref: SCTID:118924001 xref: Wikipedia:Xiphisternal_joint is_a: UBERON:0002216 {source="FMA"} ! symphysis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png" xsd:anyURI [Term] id: UBERON:0011130 name: temporomandibular joint primordium synonym: "temporo-mandibular joint primordium" EXACT [EMAPA:18714] xref: EMAPA:18714 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0001694 {source="EMAPA"} ! petrous part of temporal bone [Term] id: UBERON:0011131 name: intermetacarpal joint def: "A skeletal joint that connects two adjacent metacarpals[FMA,modified]." [FMA:35288] synonym: "intermetacarpal" RELATED [Wikipedia:Intermetacarpal_articulations] synonym: "intermetacarpal articulation" RELATED [Wikipedia:Intermetacarpal_articulations] xref: FMA:35288 xref: SCTID:303065007 xref: Wikipedia:Intermetacarpal_articulations is_a: UBERON:0001489 ! manus joint relationship: part_of UBERON:0004453 ! metacarpus region [Term] id: UBERON:0011132 name: intercarpal joint def: "A skeletal joint that connects two carpal bones." [http://orcid.org/0000-0002-6601-2165] synonym: "carpal joint" EXACT [FMA:35292] synonym: "intercarpal" RELATED [Wikipedia:Intercarpal_articulations] synonym: "intercarpal articulation" RELATED [Wikipedia:Intercarpal_articulations] synonym: "midcarpal articulation" RELATED [Wikipedia:Intercarpal_articulations] xref: FMA:35292 xref: MESH:D050824 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32264 xref: SCTID:182176003 xref: UMLS:C1262468 {source="ncithesaurus:Carpal_Joint"} xref: Wikipedia:Intercarpal_articulations is_a: UBERON:0001489 ! manus joint relationship: part_of UBERON:0004452 {source="FMA"} ! carpal region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/37/Gray336.png" xsd:anyURI [Term] id: UBERON:0011133 name: intermetatarsal joint def: "A joint that connects two adjacent metatarsals." [Wikipedia:Intermetatarsal_articulations] xref: FMA:35219 xref: SCTID:361868009 xref: Wikipedia:Intermetatarsal_articulations is_a: UBERON:0001487 ! pes joint relationship: part_of UBERON:0000983 ! metatarsus region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png" xsd:anyURI property_value: taxon_notes "In humans: The base of the first metatarsal is not connected with that of the second by any ligaments; in this respect the great toe resembles the thumb" xsd:string {source="WP"} [Term] id: UBERON:0011134 name: nonsynovial joint def: "Joint in which the articulating bones or cartilages are connected by ligaments or fibrocartilage without an intervening synovial cavity. Examples: sagittal suture, inferior tibiofibular syndesmosis, costochondral joint, pubic symphysis." [FMA:7491] synonym: "solid joint" EXACT [FMA:7491] xref: FMA:7491 is_a: UBERON:0000982 {source="FMA"} ! skeletal joint [Term] id: UBERON:0011135 name: intervertebral cartilage def: "A cartilage element that lies between two successive vertebral centra." [ISBN:0073040584] xref: AAO:0000795 is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0001468 {source="FMA", source="MA"} ! intervertebral joint property_value: external_definition "Block of cartilage, which usually ossifies, that lies between successive vertebral centra.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000795", ontology="AAO", source="AAO:Trueb_1973"} [Term] id: UBERON:0011136 name: ligament of vertebral column def: "Ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes." [ISBN:0073040584] synonym: "intervertebral ligament" BROAD [] synonym: "vertebral centrum ligament" BROAD [] synonym: "vertebral column ligament" EXACT [FMA:31892] xref: FMA:31892 xref: SCTID:244590009 is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0011137 name: axial skeletal system def: "Subdivision of the skeletal system which consists of the axial skeleton plus associated joints." [https://orcid.org/0000-0002-6601-2165] xref: FMA:7483 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] id: UBERON:0011138 name: postcranial axial skeletal system def: "Subdivision of the skeletal system which consists of the postcranial axial skeleton plus associated joints." [https://github.com/obophenotype/uberon/issues/44, https://orcid.org/0000-0002-6601-2165] synonym: "axial skeletal system" BROAD [https://github.com/obophenotype/uberon/wiki/The-axial-skeleton] synonym: "post-cranial axial skeletal system" EXACT [] xref: FMA:302077 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: develops_from UBERON:0003089 {source="cjm"} ! sclerotome property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] id: UBERON:0011139 name: synovial limb joint def: "Any synovial joint that is part of a (free) limb." [https://orcid.org/0000-0002-6601-2165] comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses. synonym: "synovial joint of free limb segment" EXACT [FMA:258776] xref: FMA:258776 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003657 ! limb joint [Term] id: UBERON:0011140 name: superficial part of masseter muscle subset: human_reference_atlas synonym: "masseter, superficial" EXACT [FEED:FEED] synonym: "pars profunda musculus masseterica superficialis" EXACT OMO:0003011 [FMA:49000, FMA:TA] synonym: "pars superficialis (musculus masseter)" EXACT [FMA:49000] synonym: "pars superficialis of masseter muscle" EXACT [] synonym: "superficial layer of masseter" EXACT [FMA:49000] synonym: "superficial part of masseter" EXACT [FMA:49000] xref: FMA:49000 xref: SCTID:142208007 is_a: UBERON:0034944 ! zone of organ relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "The superficial masseter is a separable part of the masseter muscle, is superficial to all other masseter muscle parts, and attaches to the mandibular angle.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0011141 name: appendicular ossicle def: "Ossicle that is part of the appendicular skeleton." [PSPUB:0000169, VSAO:0000131] comment: Examples of appendicular ossicles include the patella and meniscus of the knee joint. synonym: "ossicle of appendicular skeleton" EXACT [OBOL:automatic] xref: VSAO:0000131 xref: XAO:0004194 is_a: UBERON:0010911 ! ossicle relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0011142 name: axial ossicle def: "Ossicle that is part of the axial skeleton." [PSPUB:0000169, VSAO:0000133] comment: Examples of axial ossicles include the ossified tendons adjacent to the neural spines of the vertebral column. synonym: "ossicle of axial skeleton" EXACT [OBOL:automatic] synonym: "ossicle of postcranial-axial skeleton" EXACT [OBOL:automatic] synonym: "vertebral ossicle" RELATED [OBOL:automatic] xref: VSAO:0000133 is_a: UBERON:0010911 ! ossicle relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0011143 name: upper urinary tract def: "Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658] subset: human_reference_atlas subset: pheno_slim xref: FMA:45658 xref: galen:UpperUrinaryTract xref: NCIT:C61107 xref: SCTID:181413006 is_a: UBERON:0011216 ! organ system subdivision is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001008 {source="FMA"} ! renal system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011144 name: adductor muscle of hip synonym: "adductor group (leg)" EXACT [MA:0002267] synonym: "muscle of adductor group" RELATED [] xref: BTO:0000030 xref: EMAPA:19166 xref: MA:0002267 xref: SCTID:181670005 xref: SCTID:368101007 xref: Wikipedia:Adductor_muscles_of_the_hip is_a: UBERON:0010890 ! pelvic complex muscle is_a: UBERON:0011145 ! adductor muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG" xsd:anyURI [Term] id: UBERON:0011145 name: adductor muscle def: "A muscle capable of adduction. Adduction is a movement which brings a part of the anatomy closer to the middle sagittal plane of the body. It is opposed to abduction." [Wikipedia:Adduction, Wikipedia:Adductor_muscle] subset: functional_classification synonym: "adductor" RELATED [] xref: FMA:74998 xref: TAO:0002136 xref: Wikipedia:Adductor_muscle xref: ZFA:0005268 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: axiom_lost_from_external_ontology "relationship loss: subclass cranial muscle (TAO:0001953)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002136", ontology="TAO"} property_value: external_definition "A muscle that brings a body part closer to the sagittal plane of the body.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002136", ontology="TAO", source="ZFA:curator"} property_value: external_ontology_notes "we place the TAO class here even though it is a cranial muscle; it is defined functionally" xsd:string {external_ontology="TAO"} [Term] id: UBERON:0011146 name: silk gland def: "Any of the glands in silk-spinning insects and spiders that secrete a protein liquid that hardens into silk on exposure to air." [BTO:0001250] xref: BTO:0001250 is_a: UBERON:0002365 {source="BTO"} ! exocrine gland [Term] id: UBERON:0011147 name: Verson's gland def: "A gland found in the larvae of lepidoptera. Each gland is made of three cells: the secretory cell, the reservoir cell and the canal cell." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002365 ! exocrine gland relationship: part_of UBERON:0007376 ! outer epithelium [Term] id: UBERON:0011148 name: submucosal gland def: "Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue." [BTO:0003751, Wikipedia:Submucosal_glands] xref: BTO:0003751 xref: EMAPA:37970 {source="MA:th"} xref: Wikipedia:Submucosal_glands is_a: UBERON:0000414 ! mucous gland [Term] id: UBERON:0011149 name: Marshall's gland def: "A paired hollow organ in the genito-urinary apparatus of Raja (and probably other skates and rays) whose cavity is fluid filled." [http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm] synonym: "alkaline gland" RELATED [BTO:0001661] xref: BTO:0001661 is_a: UBERON:0002365 ! exocrine gland relationship: part_of UBERON:0001008 {source="BTO"} ! renal system relationship: present_in_taxon NCBITaxon:7858 [Term] id: UBERON:0011150 name: pharyngeal arch derived gill def: "A gill that develops_from a pharyngeal gill precursor." [OBOL:automatic] subset: efo_slim subset: uberon_slim synonym: "branchia" RELATED [BTO:0000518] synonym: "gills" RELATED OMO:0003004 [VHOG:0001214] xref: BTO:0000518 xref: EFO:0000933 xref: GAID:1218 xref: MAT:0000134 xref: MIAA:0000134 xref: NCIT:C92593 xref: TAO:0000354 xref: UMLS:C0017558 {source="ncithesaurus:Gill"} xref: VHOG:0001214 xref: ZFA:0000354 is_a: UBERON:0002535 ! gill is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0008894 ! pharyngeal gill precursor property_value: external_definition "Anatomical structure consisting of a series of membranes which allow dissolved oxygen from the water to pass into the bloodstream and carbon dioxide to pass out of the bloodstream.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010171", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The respiratory organ of most aquatic animals that breathe water to obtain oxygen, consisting of a filamentous structure of vascular membranes across which dissolved gases are exchanged. [Free_Online_Dictionary]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001214", ontology="VHOG", source="http://bgee.unil.ch/", source="http://www.thefreedictionary.com/gill"} property_value: homology_notes "Gill slits in the pharyngeal region of the intestine, which are also present in (at least) tunicates and acranians, are taken over to the craniote ancestor.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001214", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.209", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011151 name: jaw depressor muscle def: "A muscle whose action is to depress the lower jaw." [DOI:10.1006/bijl.2000.0436, https://github.com/obophenotype/uberon/issues/232] synonym: "branchiomandibularis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "coracomandibularis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "depressor gnathalis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "geniohyoideus" NARROW SENSU [DOI:10.1006/bijl.2000.0436, TAO:0000612] synonym: "geniohyoideus muscle" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "geniothoracis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "protractor hyoidei" NARROW OMO:0003004 [TAO:0000612] synonym: "protractor hyoideus" NARROW SENSU [DOI:10.1006/bijl.2000.0436] xref: AAO:0010655 xref: TAO:0000612 xref: XAO:0004127 is_a: UBERON:0005493 ! hyoid muscle property_value: axiom_lost_from_external_ontology "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010655", ontology="AAO"} property_value: external_comment "Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000612", ontology="TAO", source="Curator"} property_value: external_definition "Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000612", ontology="TAO", source="TAO:wd"} property_value: external_definition "Muscle that pulls the hyoid apparatus forward and depresses the lower jaw.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010655", ontology="AAO", source="AAO:BMZ"} property_value: taxon_notes "In amphibians, 'Muscle that pulls the hyoid apparatus forward and depresses the lower jaw.' [AAO:0010655]. 'The protractor hyoideus muscle in teleosts is commonly, albeit mistakenly, referred to as the geniohyoideus muscle, which is involved in the coracomandibularis coupling. According to Edgeworth (1935) and Winterbottom (1974), the protractor hyoideus is composed of a fusion of the intermandibularis posterior and the interhyoideus muscles which resulted in the protractor hyoideus which spans the hyoid and mandible. The intermandibularis spans the mandible while the closely apposed interhyoideus spans the hyoid in other fishes. Furthermore, they concluded that any muscle that is homologous to the geniohyoideus (coracomandibularis coupling) in other lower vertebrates has been lost in teleosts, as well as gars. However, the protractor hyoideus muscle is functionally analogous to the coracomandibularis coupling of other vertebrates and so we use it in our discussion to show the phylogenetically broad roles of these couplings in jaw mechanics.'" xsd:string {source="DOI:10.1006/bijl.2000.0436"} [Term] id: UBERON:0011152 name: dorsal hyoid arch skeleton synonym: "dorsal hyoid arch" EXACT [ZFA:0001401] synonym: "dorsal pharyngeal arch 2 skeleton" EXACT [] synonym: "dorsal visceral arch 2" EXACT [ZFA:0001401] xref: AAO:0010371 xref: TAO:0001401 xref: XAO:0003178 xref: ZFA:0001401 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton [Term] id: UBERON:0011153 name: ventral hyoid arch skeleton subset: efo_slim synonym: "ventral hyoid arch" EXACT [ZFA:0001402] synonym: "ventral pharyngeal arch 2 skeleton" EXACT [] synonym: "ventral visceral arch 2" EXACT [ZFA:0001402] xref: AAO:0010372 xref: EFO:0003684 xref: TAO:0001402 xref: XAO:0003179 xref: ZFA:0001402 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton [Term] id: UBERON:0011154 name: gular region def: "Surface structure that extends from the chin covering pharynx and larynx." [http://orcid.org/0000-0002-6601-2165] xref: TAO:0002286 is_a: UBERON:0003102 {source="TAO"} ! surface structure relationship: part_of UBERON:0007811 ! craniocervical region property_value: external_definition "Surface structure that is the region between the chin and the isthmus. (from http://www.briancoad.com/Dictionary/introduction.htm).[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002286", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0011155 name: Sylvian cistern def: "The subarachnoid space associated with the lateral cerebral sulcus (Sylvian fissure); contains the M1 segment of the middle cerebral artery and the origin of lenticulostriate arteries, and proximal parts of the middle cerebral artery." [http://www.mondofacto.com/facts/dictionary?Sylvian+cistern] xref: NCIT:C33714 xref: UMLS:C1515104 {source="ncithesaurus:Sylvian_Cistern"} is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0011156 name: facial skeleton def: "Subdivision of skull that consists of the facial bones." [http://www.bartleby.com/107/37.html, https://orcid.org/0000-0002-6601-2165, MP:0005274, Wikipedia:Facial_skeleton] subset: pheno_slim synonym: "facial bone" RELATED [MA:0000318] synonym: "facial skeleton" EXACT [FMA:53673] synonym: "ossa facialia" RELATED OMO:0003011 [Wikipedia:Facial_skeleton] synonym: "ossa faciei" RELATED OMO:0003011 [Wikipedia:Facial_skeleton] synonym: "viscerocranium" RELATED INCONSISTENT [MA:0000318] xref: EHDAA2:0002206 xref: EHDAA:8361 xref: EMAPA:18022 xref: FMA:53673 xref: MA:0000318 xref: Wikipedia:Facial_skeleton is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011158 {source="FMA"} ! primary subdivision of skull relationship: part_of UBERON:0001456 {source="FMA"} ! face property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg" xsd:anyURI [Term] id: UBERON:0011157 name: cuneiform cartilage def: "The cuneiform cartilages of the larynx are two small, elongated pieces of yellow elastic cartilage, placed one on either side, in the aryepiglottic fold, where they give rise to small whitish elevations on the surface of the mucous membrane, just in front of the arytenoid cartilages." [Wikipedia:Cuneiform_cartilages] synonym: "cartilage of Morgagni" EXACT [FMA:55111] synonym: "cartilage of Wrisberg" EXACT [FMA:55111] synonym: "cartilagines cuneiformes" RELATED OMO:0003011 [Wikipedia:Cuneiform_cartilages] synonym: "cartilago apicalis intermedia" RELATED [AAO:0000690] synonym: "cartilago apicalis seu cartilago Santoriniana" RELATED [AAO:0000690] synonym: "Wrisbergi cartilage" EXACT [AAO:0000690] xref: AAO:0000690 xref: FMA:55111 xref: NCIT:C32417 xref: SCTID:264456009 xref: Wikipedia:Cuneiform_cartilages is_a: UBERON:0001739 {source="FMA"} ! laryngeal cartilage is_a: UBERON:0001996 {source="Wikipedia"} ! elastic cartilage tissue is_a: UBERON:0003583 ! larynx connective tissue property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray956.png" xsd:anyURI property_value: external_definition "Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000690", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "compare with AAO def, 'Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages.'" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0011158 name: primary subdivision of skull def: "The skull can be divided into two: the neurocranium and the facial skeleton." [http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "skull subdivision" EXACT [FMA:54964] synonym: "subdivision of skull" EXACT [FMA:54964] xref: FMA:54964 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0011159 name: primary subdivision of cranial skeletal system subset: non_informative is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: part_of UBERON:0010323 ! cranial skeletal system [Term] id: UBERON:0011160 name: nasal suture def: "A suture joining a nasal bone to another bone." [http://orcid.org/0000-0002-6601-2165] xref: SCTID:368992007 is_a: UBERON:0009199 ! facial suture [Term] id: UBERON:0011161 name: spheno-occipital synchondrosis def: "The cartilaginous junction between the basisphenoid and basioccipital bones of the mammalian skull." [http://www.merriam-webster.com/medical/spheno-occipital%20synchondrosis] xref: FMA:54818 xref: SCTID:140895003 is_a: UBERON:0001725 ! cranial synchondrosis property_value: taxon_notes "in humans, usually closed by the age of 25" xsd:string [Term] id: UBERON:0011162 name: supraoccipital cartilage element def: "A cartilaginous condensation that has the potential to develop into a supraoccipital bone." [OBOL:automatic] synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] xref: EMAPA:18341 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0015015 ! supraoccipital endochondral element relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation [Term] id: UBERON:0011163 name: supraoccipital pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a supraoccipital bone." [OBOL:automatic] synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] xref: EHDAA2:0001963 xref: EHDAA:9534 is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0015015 ! supraoccipital endochondral element relationship: develops_from UBERON:0009617 {source="EHDAA2-inferred"} ! head paraxial mesoderm [Term] id: UBERON:0011164 name: neurocranium bone def: "A bone that is part of a neurocranium [Automatically generated definition]." [OBOL:automatic] synonym: "chondrocranium bone" EXACT [MA:0001478] xref: EMAPA:35238 xref: MA:0001478 xref: SCTID:120229002 is_a: UBERON:0003457 ! head bone is_a: UBERON:0004766 ! cranial bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0011165 name: crico-esophageal tendon def: "Longitudinal fibers of the esophagus that attaches to the posterior aspect of the cricoid cartilage of the larynx." [http://www.medilexicon.com/medicaldictionary.php?t=90131] synonym: "crico-oesophageal tendon" EXACT [] synonym: "cricoesophageal tendon" EXACT [] synonym: "Gillette suspensory ligament" RELATED [http://www.medilexicon.com/] synonym: "suspensory ligament of esophagus" RELATED [http://www.medilexicon.com/] synonym: "tendo cricoesophageus" EXACT [http://www.medilexicon.com/] xref: FMA:76887 xref: NCIT:C32399 xref: SCTID:322841005 xref: UMLS:C0227182 {source="ncithesaurus:Cricoesophageal_Tendon"} is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament [Term] id: UBERON:0011166 name: patellofemoral joint synonym: "femorapatellar joint" EXACT [] synonym: "femoropatellar joint" EXACT [] synonym: "patello femoral joint" EXACT [galen:PatelloFemoralJoint] xref: FMA:43574 xref: galen:PatelloFemoralJoint xref: MESH:D057071 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:182202009 is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0011167 name: septomaxilla bone def: "Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis." [AAO:0000556, https://github.com/obophenotype/uberon/issues/97] comment: A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity synonym: "internasale" RELATED [AAO:0000556] synonym: "intranasal" RELATED [AAO:0000556] synonym: "lacrimale" RELATED [AAO:0000556] synonym: "le cornet" RELATED [AAO:0000556] synonym: "nariale" RELATED [AAO:0000556] synonym: "nasale" RELATED [AAO:0000556] synonym: "os internasale" RELATED [AAO:0000556] synonym: "os nariale" RELATED [AAO:0000556] synonym: "septomaxilla" EXACT [AAO:0000556] synonym: "septomaxillary" RELATED [AAO:0000556] synonym: "turbinale" RELATED [AAO:0000556] xref: AAO:0000556 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton [Term] id: UBERON:0011168 name: postfrontal bone def: "A bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals." [http://www.merriam-webster.com/dictionary/postfrontal] synonym: "postfrontal" BROAD [] is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: present_in_taxon NCBITaxon:8570 {source="Wikipedia"} [Term] id: UBERON:0011169 name: postorbital bone def: "The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal." [Wikipedia:Postorbital_bone] synonym: "postorbital" BROAD [] xref: Wikipedia:Postorbital_bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011170 name: quadrate-articular joint def: "A skeletal joint that connects quadrate and articular bones." [http://evolution.berkeley.edu/evolibrary/article/evograms_05, https://orcid.org/0000-0002-6601-2165] synonym: "quadrate-anguloarticular joint" RELATED [ZFA:0005484] xref: TAO:0001802 xref: ZFA:0005484 is_a: UBERON:0011171 ! joint connecting upper and lower jaws relationship: never_in_taxon NCBITaxon:32525 {source="http://evolution.berkeley.edu"} property_value: curator_notes "over time, the synapsids' quadrate-articular jaw joint (which the rest of the tetrapods possess) was replaced by a dentary-squamosal joint (which all living mammals possess), while the quadrate and articular migrated, shrank, and became part of the complex of middle ear bones." xsd:string {source="http://evolution.berkeley.edu/evolibrary/article/evograms_05"} property_value: curator_notes "see comments for UBERON:0004744 articular/anguloarticular." xsd:string property_value: external_definition "Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001802", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0011171 name: joint connecting upper and lower jaws def: "Synovial joint that articulates bones of upper and lower jaw." [http://evolution.berkeley.edu/evolibrary/article/evograms_05, https://orcid.org/0000-0002-6601-2165] synonym: "craniomandibular joint" NARROW [] synonym: "jaw joint" BROAD [] is_a: UBERON:0002217 {source="abduced"} ! synovial joint property_value: taxon_notes "Some synapsids retained two pairs of jaw joints - quadrate-articular and tempero-mandibular, but this unusual paired condition did not last long" xsd:string {source="http://evolution.berkeley.edu"} [Term] id: UBERON:0011172 name: retrorubral area of midbrain reticular nucleus def: "The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus." [NLXANAT:20090301] synonym: "A8" BROAD [NLXANAT:20090301] synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] synonym: "area orbitalis interna" RELATED OMO:0003011 [NeuroNames:1036] synonym: "brodmann's area 11" RELATED [NeuroNames:1036] synonym: "midbraiin reticular nucleus, retrorubral area" RELATED [BAMS:RR] synonym: "midbrain reticular nucleus, retrorubral area" EXACT [ABA:RR] synonym: "retrorubal field" BROAD [http://braininfo.rprc.washington.edu/] synonym: "retrorubral area" EXACT [NLXANAT:20090301] synonym: "retrorubral field" RELATED [BAMS:RR] synonym: "retrorubral nucleus" RELATED [BAMS:RR] xref: BAMS:RR xref: DHBA:12289 xref: DMBA:16884 xref: MBA:246 xref: neuronames:1036 {source="NLXANAT:20090301"} xref: NLXANAT:20090301 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0007415 {source="Obol"} ! nucleus of midbrain reticular formation [Term] id: UBERON:0011173 name: anterior division of bed nuclei of stria terminalis def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis." [neuronames:2753] synonym: "anterior division" BROAD [MA:0000926] synonym: "anterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu] synonym: "anterior part of the bed nucleus of the stria terminalis" RELATED [BAMS:BSTa] synonym: "bed nuclei of the stria terminalis anterior division" RELATED [BAMS:BSTa] synonym: "bed nuclei of the stria terminalis, anterior division" EXACT [ABA:BSTa] synonym: "bed nuclei of the stria terminals anterior division" RELATED [BAMS:BSTa] synonym: "bed nucleus of the stria terminalis anterior division" RELATED [BAMS:BSTa] synonym: "bed nucleus of the stria terminalis anterior part" RELATED [BAMS:BSTa] synonym: "bed nucleus of thestria terminalis anterior division" RELATED [BAMS:BSTa] xref: BAMS:BSTa xref: EMAPA:37407 {source="MA:th"} xref: MA:0000926 xref: MBA:359 xref: neuronames:2753 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis [Term] id: UBERON:0011175 name: fusiform nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model -Rat ( Swanson-2004 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218] synonym: "bed nuclei of the stria terminalis anterior division fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nuclei of the stria terminalis fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nuclei of the stria terminalis, anterior division, fusiform nucleus" EXACT [ABA:BSTfu] synonym: "bed nuclei of the stria terminals anterior division fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nucleus of the stria terminalis fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nucleus of the stria terminalis fusiform part" RELATED [BAMS:BSTfu] synonym: "fusiform nucleus" BROAD [MA:0000927] xref: BAMS:BSTfu xref: EMAPA:37591 {source="MA:th"} xref: MA:0000927 xref: MBA:513 xref: neuronames:3218 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011176 name: oval nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004)." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214] synonym: "bed nuclei of the stria terminalis, anterior division, oval nucleus" EXACT [ABA:BSTov] synonym: "oval nucleus" EXACT [MA:0000929] xref: EMAPA:37667 {source="MA:th"} xref: MA:0000929 xref: MBA:554 xref: neuronames:3214 xref: NLX:77783 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011177 name: posterior division of bed nuclei of stria terminalis def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis." [neuronames:2754] synonym: "bed nuclei of the stria terminalis posterior division" RELATED [BAMS:BSTp] synonym: "bed nuclei of the stria terminalis, posterior division" EXACT [ABA:BSTp] synonym: "bed nucleus of stria terminalis posterior part" RELATED [BAMS:BSTp] synonym: "bed nucleus of the stria terminalis posterior division" RELATED [BAMS:BSTp] synonym: "posterior division" BROAD [MA:0000930] synonym: "posterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu] synonym: "posterior part of the bed nucleus of the stria terminalis" RELATED [BAMS:BSTp] xref: BAMS:BSTp xref: EMAPA:37408 {source="MA:th"} xref: MA:0000930 xref: MBA:367 xref: neuronames:2754 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis [Term] id: UBERON:0011178 name: principal nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat ( Swanson-2004 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221] synonym: "bed nuclei of the stria terminalis posterior division principal nucleus" RELATED [BAMS:BSTpr] synonym: "bed nuclei of the stria terminalis principal nucleus" RELATED [BAMS:BSTpr] synonym: "bed nuclei of the stria terminalis, posterior division, principal nucleus" EXACT [ABA:BSTpr] synonym: "bed nucleus of the stria terminalis principal (encapsulated) nucleus" RELATED [BAMS:BSTpr] synonym: "principal nucleus" BROAD [MA:0000931] xref: BAMS:BSTpr xref: EMAPA:37726 {source="MA:th"} xref: MA:0000931 xref: MBA:578 xref: neuronames:3221 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011179 name: transverse nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004)." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223] synonym: "bed nuclei of the stria terminalis posterior division transverse nucleus" RELATED [BAMS:BSTtr] synonym: "bed nuclei of the stria terminalis transverse nucleus" RELATED [BAMS:BSTtr] synonym: "bed nuclei of the stria terminalis, posterior division, transverse nucleus" EXACT [ABA:BSTtr] synonym: "bed nucleus of the stria terminalis transverse nucleus" RELATED [BAMS:BSTtr] synonym: "transverse nucleus" BROAD [MA:0000932] xref: BAMS:BSTtr xref: EMAPA:37727 {source="MA:th"} xref: MA:0000932 xref: MBA:594 xref: neuronames:3223 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011183 name: corpus spongiosum of penis def: "Corpus spongiosum (also known as corpus cavernosum urethrae in older texts) is the mass of spongy tissue surrounding the male urethra within the penis." [Wikipedia:Corpus_spongiosum_penis] synonym: "corpus cavernosum urethra" RELATED DEPRECATED [Wikipedia:Corpus_spongiosum_penis] synonym: "corpus cavernosum urethrae" RELATED DEPRECATED [Wikipedia:Corpus_spongiosum_penis] synonym: "corpus spongiosum" RELATED [Wikipedia:Corpus_spongiosum_penis] synonym: "spongiose body of penis" EXACT [FMA:19617] xref: FMA:19617 xref: NCIT:C32384 xref: SCTID:279712008 xref: UMLS:C1522442 {source="ncithesaurus:Corpus_Spongiosum"} xref: Wikipedia:Corpus_spongiosum_penis is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008324 ! erectile tissue is_a: UBERON:0009010 ! periurethral tissue relationship: part_of UBERON:0000989 ! penis property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png" xsd:anyURI property_value: function_notes "The function of the corpus spongiosum in erection is to prevent the urethra from pinching closed, thereby maintaining the urethra as a viable channel for ejaculation. To do this, the corpus spongiosum remains pliable during erection while the corpora cavernosum penis becomes engorged with blood." xsd:string {source="WP"} [Term] id: UBERON:0011184 name: epithelium of crypt of Lieberkuhn def: "An epithelium that is part of a crypt of Lieberkuhn." [OBOL:automatic] subset: human_reference_atlas synonym: "crypt epithelium" BROAD [] synonym: "intestinal crypt epithelium" EXACT [] xref: NCIT:C83191 xref: UMLS:C2826787 {source="ncithesaurus:Crypt_Epithelium"} is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0001983 ! crypt of Lieberkuhn relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "FMA has classes for subdivisions of this epithelium" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011185 name: gastrointestinal sphincter def: "A sphincter muscle that is part of the gastrointestinal system." [OBOL:automatic] xref: NCIT:C32669 xref: UMLS:C1517464 {source="ncithesaurus:Gastrointestinal_Sphincter"} is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system [Term] id: UBERON:0011186 name: Krause's gland def: "Small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva." [Wikipedia:Krause's_glands] synonym: "accessory lacrimal gland" BROAD [FMA:59056] synonym: "conjunctival gland" BROAD [FMA:59056] synonym: "Krause gland" EXACT [FMA:59056] xref: FMA:59056 xref: NCIT:C32678 xref: SCTID:23492003 xref: SCTID:278359007 xref: UMLS:C1306642 {source="ncithesaurus:Gland_of_Krause"} xref: Wikipedia:Krause's_glands is_a: UBERON:0013226 ! accessory lacrimal gland relationship: part_of UBERON:0001351 {source="ncithesaurus"} ! lacrimal sac [Term] id: UBERON:0011187 name: ventral tubercle of humerus def: "The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives ('superior facet') insertion to the Supraspinatus the middle ('middle facet') to the Infraspinatus. the lowest one ('inferior facet'), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove)." [Wikipedia:Greater_tubercle] synonym: "greater tubercle" EXACT [FMA:23390] synonym: "greater tubercle of humerus" EXACT [FMA:23390] synonym: "greater tubercle of the humerus" RELATED [Wikipedia:Greater_tubercle] synonym: "greater tuberosity" RELATED [Wikipedia:Greater_tubercle] synonym: "greater tuberosity of humerus" EXACT [FMA:23390] synonym: "tuberculum majus" EXACT OMO:0003011 [FMA:TA] synonym: "tuberculum majus humeri" EXACT [Wikipedia:Greater_tubercle] xref: FMA:23390 xref: NCIT:C32700 xref: SCTID:181934009 xref: UMLS:C1512275 {source="ncithesaurus:Greater_Tuberosity"} xref: Wikipedia:Greater_tubercle is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png" xsd:anyURI [Term] id: UBERON:0011188 name: lesser tubercle of humerus def: "The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis." [Wikipedia:Lesser_tubercle] subset: human_reference_atlas synonym: "lesser tubercle" EXACT [FMA:23393] synonym: "lesser tubercle of humerus" RELATED [Wikipedia:Lesser_tubercle] synonym: "lesser tubercle of the humerus" RELATED [Wikipedia:Lesser_tubercle] synonym: "lesser tuberosity of humerus" EXACT [FMA:23393] synonym: "tuberculum minus" EXACT OMO:0003011 [FMA:TA] xref: FMA:23393 xref: NCIT:C32983 xref: SCTID:181935005 xref: UMLS:C0223687 {source="ncithesaurus:Lesser_Tuberosity"} xref: Wikipedia:Lesser_tubercle is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Tuberculumminushumeri.png" xsd:anyURI [Term] id: UBERON:0011189 name: lamina propria of large intestine def: "A lamina propria that is part of a large intestine." [OBOL:automatic] subset: human_reference_atlas synonym: "lamina propria of mucosa of large intestine" EXACT [FMA:15654] synonym: "large intestinal lamina propria" EXACT [] synonym: "large intestine lamina propria" EXACT [FMA:15654] xref: FMA:15654 xref: NCIT:C49298 xref: UMLS:C1708644 {source="ncithesaurus:Large_Intestinal_Lamina_Propria"} is_a: UBERON:0004780 ! gastrointestinal system lamina propria relationship: part_of UBERON:0001207 {source="FMA"} ! mucosa of large intestine relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011190 name: lunule of nail def: "A crescent-shaped whitish area of the bed of a fingernail or toenail. The lunula is the visible part of the nail matrix (i.e. the root of the nail)." [Wikipedia:unula_(anatomy)] synonym: "lunula" EXACT [] synonym: "lunula unguis" EXACT OMO:0003011 [FMA:77858, FMA:TA] synonym: "nail lunule" EXACT [FMA:77858] xref: FMA:77858 xref: NCIT:C33025 xref: SCTID:300538005 xref: UMLS:C0221991 {source="ncithesaurus:Lunula"} xref: Wikipedia:unula_(anatomy) is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001705 ! nail [Term] id: UBERON:0011191 name: ophthalmic vein def: "Ophthalmic veins are veins which drain the eye. More specifically, they can refer to: Superior ophthalmic vein Inferior ophthalmic vein." [Wikipedia:Ophthalmic_veins] synonym: "opthalmic vein" EXACT [EHDAA2:0004113] synonym: "vena ophthalmica" RELATED [Wikipedia:Ophthalmic_veins] xref: EHDAA2:0004113 xref: EMAPA:19313 xref: Wikipedia:Ophthalmic_veins xref: XAO:0004169 is_a: UBERON:0009141 {source="EHDAA2-modified"} ! craniocervical region vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0011192 name: superior ophthalmic vein def: "The superior ophthalmic vein begins at the inner angle of the orbit in a vein named the nasofrontal which communicates anteriorly with the angular vein; it pursues the same course as the ophthalmic artery, and receives tributaries corresponding to the branches of that vessel. Forming a short single trunk, it passes between the two heads of the Rectus lateralis and through the medial part of the superior orbital fissure, and ends in the cavernous sinus. The ethmoidal veins drain into the superior ophthalmic vein. Vorticose veins also drain into the superior ophthalmic vein." [Wikipedia:Superior_ophthalmic_vein] subset: human_reference_atlas synonym: "anterior ethmoidal vein" RELATED [Wikipedia:Superior_ophthalmic_vein] synonym: "posterior ethmoidal vein" RELATED [Wikipedia:Superior_ophthalmic_vein] synonym: "superior ophthalmic" RELATED [Wikipedia:Superior_ophthalmic_vein] synonym: "superior opthalmic vein" RELATED [] xref: FMA:51246 xref: SCTID:149481004 xref: Wikipedia:Superior_ophthalmic_vein is_a: UBERON:0011191 ! ophthalmic vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png" xsd:anyURI [Term] id: UBERON:0011193 name: inferior ophthalmic vein def: "The inferior ophthalmic vein begins in a venous net-work at the forepart of the floor and medial wall of the orbit; it receives some vorticose veins and other veins from the Rectus inferior, Obliquus inferior, lacrimal sac and eyelids, runs backward in the lower part of the orbit and divides into two branches. One of these passes through the inferior orbital fissure and joins the pterygoid venous plexus, while the other enters the cranium through the superior orbital fissure and ends in the cavernous sinus, either by a separate opening, or more frequently in common with the superior ophthalmic vein." [Wikipedia:Inferior_ophthalmic_vein] subset: human_reference_atlas synonym: "inferior ophthalmic" RELATED [Wikipedia:Inferior_ophthalmic_vein] synonym: "inferior opthalmic vein" RELATED [] xref: FMA:51247 xref: SCTID:149986001 xref: Wikipedia:Inferior_ophthalmic_vein is_a: UBERON:0011191 ! ophthalmic vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png" xsd:anyURI [Term] id: UBERON:0011194 name: ophthalmic plexus def: "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus." [http://www.encyclo.co.uk/define/ophthalmic%20plexus] subset: human_reference_atlas synonym: "ophthalmic nerve plexus" EXACT [] synonym: "ophthalmic plexus" EXACT [MA:0002185] synonym: "opthalmic plexus" EXACT [] synonym: "plexus ophthalmicus" EXACT OMO:0003011 [] xref: EMAPA:37704 {source="MA:th"} xref: FMA:312377 xref: MA:0002185 xref: NCIT:C53057 xref: UMLS:C1709326 {source="ncithesaurus:Ophthalmic_Plexus"} is_a: UBERON:0001810 {source="ncithesaurus"} ! nerve plexus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011195 name: inferior parathyroid epithelium def: "An epithelium that is part of a inferior parathyroid gland." [OBOL:automatic] synonym: "parathyroid III epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0000824 xref: EHDAA:3868 is_a: UBERON:0011197 ! parathyroid epithelium relationship: develops_from UBERON:0010025 {source="EHDAA2"} ! dorsal part of pharyngeal pouch 3 relationship: part_of UBERON:0006755 ! inferior parathyroid gland [Term] id: UBERON:0011196 name: superior parathyroid epithelium def: "An epithelium that is part of a superior parathyroid gland." [OBOL:automatic] xref: EHDAA2:0001957 xref: EHDAA:3874 is_a: UBERON:0011197 ! parathyroid epithelium relationship: develops_from UBERON:0007125 {source="EHDAA2"} ! pharyngeal pouch 4 relationship: part_of UBERON:0006749 ! superior parathyroid gland [Term] id: UBERON:0011197 name: parathyroid epithelium def: "An epithelium that is part of a parathyroid gland." [OBOL:automatic] xref: CALOHA:TS-2141 xref: NCIT:C48258 xref: UMLS:C1709466 {source="ncithesaurus:Parathyroid_Gland_Epithelial_Tissue"} is_a: UBERON:0000486 {source="EHDAA2-abduced"} ! multilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0004117 ! pharyngeal pouch relationship: part_of UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0011198 name: muscle layer of large intestine def: "A muscle layer that is part of a large intestine." [OBOL:automatic] synonym: "muscular coat of large intestine" EXACT [FMA:14971] synonym: "muscular layer of large intestine" EXACT [FMA:14971] synonym: "muscularis externa of large intestine" EXACT [FMA:14971] synonym: "tunica muscularis intestini crassi" EXACT OMO:0003011 [FMA:TA] xref: FMA:14971 xref: NCIT:C32927 xref: UMLS:C0734205 {source="ncithesaurus:Large_Intestinal_Muscular_Coat"} is_a: UBERON:0012367 ! muscle layer of intestine relationship: part_of UBERON:0001169 {source="FMA"} ! wall of large intestine [Term] id: UBERON:0011199 name: prostatic utricle def: "A small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts." [Wikipedia:Prostatic_utricle] synonym: "sinus pocularis" EXACT [FMA:19702] synonym: "uterus masculinus" EXACT [FMA:19702] synonym: "uterus masculinus" RELATED OMO:0003011 [Wikipedia:Prostatic_utricle] synonym: "utricle of prostate" EXACT [FMA:19702] synonym: "utriculus of prostate" EXACT [FMA:19702] synonym: "utriculus prostaticus" RELATED OMO:0003011 [Wikipedia:Prostatic_utricle] synonym: "vagina masculina" EXACT OMO:0003011 [FMA:19702, Wikipedia:Prostatic] synonym: "vagina masculina" RELATED [Wikipedia:Prostatic_utricle] synonym: "vesicula prostatica" RELATED OMO:0003011 [Wikipedia:Prostatic_utricle] xref: FMA:19702 xref: NCIT:C63862 xref: SCTID:197909004 xref: UMLS:C0227736 {source="ncithesaurus:Prostatic_Utricle"} xref: Wikipedia:Prostatic_utricle is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001335 {source="FMA"} ! prostatic urethra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: editor_note "add df relations. Check mesopnephric duct" xsd:string [Term] id: UBERON:0011200 name: sacrococcygeal symphysis def: "The sacrococcygeal symphysis (sacrococcygeal articulation, articulation of the sacrum and coccyx) is an amphiarthrodial joint, formed between the oval surface at the apex of the sacrum, and the base of the coccyx. It is a slightly moveable joint which is frequently, partially or completely, obliterated in old age, homologous with the joints between the bodies of the vertebrae." [Wikipedia:Sacrococcygeal_symphysis] synonym: "sacrococcygeal joint" EXACT [FMA:16210] synonym: "sacrococcygeal joint" RELATED [Wikipedia:Sacrococcygeal_symphysis] xref: FMA:16210 xref: NCIT:C33506 xref: UMLS:C0224593 {source="ncithesaurus:Sacrococcygeal_Joint"} xref: Wikipedia:Sacrococcygeal_symphysis is_a: UBERON:0001468 {source="FMA"} ! intervertebral joint property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray320.png" xsd:anyURI [Term] id: UBERON:0011201 name: muscle layer of small intestine def: "A muscle layer that is part of a small intestine." [OBOL:automatic] synonym: "muscular coat of small intestine" EXACT [FMA:14932] synonym: "muscular layer of small intestine" EXACT [FMA:14932] synonym: "muscularis externa of small intestine" EXACT [FMA:14932] synonym: "small intestine muscularis propria" EXACT [FMA:14932] synonym: "tunica muscularis (intestinum tenue)" EXACT [FMA:14932] synonym: "tunica muscularis intestini tenuis" EXACT OMO:0003011 [FMA:TA] xref: FMA:14932 xref: NCIT:C33569 xref: SCTID:362145004 xref: UMLS:C0227269 {source="ncithesaurus:Small_Intestinal_Muscular_Coat"} is_a: UBERON:0012367 ! muscle layer of intestine relationship: part_of UBERON:0001168 {source="FMA"} ! wall of small intestine [Term] id: UBERON:0011202 name: urachus epithelium def: "An epithelium that is part of a urachus." [OBOL:automatic] xref: EHDAA2:0004725 xref: NCIT:C54210 xref: UMLS:C1711256 {source="ncithesaurus:Urachal_Epithelium"} is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0002068 ! urachus [Term] id: UBERON:0011203 name: urachus mesenchyme def: "Mesenchyme that is part of a developing urachus." [OBOL:automatic] xref: EHDAA2:0004726 is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: part_of UBERON:0002068 ! urachus [Term] id: UBERON:0011204 name: rectovesical pouch def: "Between the rectum and the bladder the peritoneal cavity forms, in the male, a pouch, the rectovesical excavation (or rectovesical pouch), the bottom of which is slightly below the level of the upper ends of the vesiculae seminalesbi. e. , about 7.5 cm. from the orifice of the anus. its lowest part membranous partition called Rectoprostatic fascia. The corresponding structure in women is the rectouterine pouch." [Wikipedia:Recto-vesical_pouch] synonym: "excavatio rectovesicalis" EXACT OMO:0003011 [FMA:TA] synonym: "excavatio rectovesicalis" RELATED [Wikipedia:Recto-vesical_pouch] synonym: "recto-vesical pouch" EXACT [FMA:14727] synonym: "rectovesical" RELATED [Wikipedia:Recto-vesical_pouch] synonym: "rectovesical excavation" RELATED [Wikipedia:Recto-vesical_pouch] synonym: "rectovesical pouch" RELATED [Wikipedia:Recto-vesical_pouch] synonym: "rectovesical space" EXACT [FMA:14727] synonym: "retrovesical excavation" RELATED [Wikipedia:Recto-vesical_pouch] xref: FMA:14727 xref: NCIT:C33448 xref: SCTID:261416006 xref: UMLS:C0230301 {source="ncithesaurus:Recto-Vesical_Pouch"} xref: Wikipedia:Recto-vesical_pouch is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002358 ! peritoneum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/45/Gray1228.png" xsd:anyURI [Term] id: UBERON:0011205 name: carpometacarpus def: "The carpometacarpus is the fusion of the carpal and metacarpal bone, essentially a single fused bone between the wrist and the knuckles. It is a smallish bone in most birds, generally flattened and with a large hole in the middle. In flightless birds, however, its shape may be slightly different, or it might be absent entirely." [Wikipedia:Carpometacarpus] synonym: "carpometacarpus bone" EXACT [] xref: Wikipedia:Carpometacarpus is_a: UBERON:0005897 ! manus bone [Term] id: UBERON:0011206 name: hinge joint def: "A joint that allows motion around an axis." [BTO:0004707, Wikipedia:Hinge_joint] synonym: "ginglymus" RELATED [BTO:0004707] xref: BTO:0004707 xref: FMA:75296 xref: galen:HingeJoint xref: SCTID:335391000 xref: Wikipedia:Hinge_joint is_a: UBERON:0000982 {source="BTO"} ! skeletal joint property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4b/Gelenke_Zeichnung01.jpg" xsd:anyURI [Term] id: UBERON:0011207 name: iliocostalis lumborum def: "The iliocostalis lumborum (iliocostalis muscle; sacrolumbalis muscle) is inserted, by six or seven flattened tendons, into the inferior borders of the angles of the lower six or seven ribs." [Wikipedia:Iliocostalis#Iliocostalis_lumborum] synonym: "sacrolumbalis" RELATED [Wikipedia:Iliocostalis] synonym: "sacrolumbalis muscle" RELATED [Wikipedia:Iliocostalis] xref: FMA:22702 xref: SCTID:244855009 xref: Wikipedia:Iliocostalis#Iliocostalis_lumborum is_a: UBERON:0002251 {source="FMA"} ! iliocostalis muscle [Term] id: UBERON:0011208 name: medial migration pathway NC-derived mesenchyme synonym: "medial migration pathway" RELATED [] synonym: "medial migration pathway mesenchyme" EXACT [ZFA:0000786] xref: EHDAA2:0001075 xref: EHDAA:1747 xref: EMAPA:16597 xref: TAO:0000786 xref: ZFA:0000786 is_a: UBERON:0011210 ! migration pathway NC-derived mesenchyme [Term] id: UBERON:0011209 name: lateral migration pathway NC-derived mesenchyme synonym: "lateral migration pathway" RELATED [] synonym: "lateral migration pathway mesenchyme" EXACT [ZFA:0000992] xref: EHDAA2:0000915 xref: EHDAA:1745 xref: EMAPA:16596 xref: TAO:0000992 xref: ZFA:0000992 is_a: UBERON:0011210 ! migration pathway NC-derived mesenchyme [Term] id: UBERON:0011210 name: migration pathway NC-derived mesenchyme synonym: "migration pathway mesenchyme" EXACT [] synonym: "NC migration pathway" RELATED [] is_a: UBERON:0007214 ! mesenchyme derived from trunk neural crest is_a: UBERON:0007530 {source="EHDAA2-abduced"} ! migrating mesenchyme population relationship: develops_from UBERON:0007214 {source="EHDAA2-abduced", source="ZFA-abduced"} ! mesenchyme derived from trunk neural crest relationship: part_of UBERON:0007214 {source="EHDAA2-abduced"} ! mesenchyme derived from trunk neural crest [Term] id: UBERON:0011213 name: root of vagus nerve def: "A root of cranial nerve that is part of a vagus nerve." [OBOL:automatic] synonym: "rootlet of vagus nerve" EXACT [FMA:6213] synonym: "rX" BROAD [ZFA:0007011] synonym: "vagal root" EXACT [ZFA:0007011] synonym: "vagus nerve root" EXACT [BIRNLEX:1456] synonym: "vagus neural rootlet" RELATED [FMA:6213] synonym: "vagus root" EXACT [ZFA:0007011] xref: BIRNLEX:1456 xref: DHBA:12888 xref: DMBA:17748 xref: FMA:6213 xref: HBA:9337 xref: ZFA:0007011 is_a: UBERON:0002211 ! nerve root property_value: external_ontology_notes "FMA distinguishes between roots and rootlets - we mix the two here" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011214 name: nucleus of midbrain tectum def: "A neural nucleus that is part of a midbrain tectum." [OBOL:automatic] synonym: "nucleus of tectum" EXACT [FMA:258766] synonym: "tectal nucleus" BROAD [] xref: FMA:258766 is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0011215 name: central nervous system cell part cluster def: "A multi cell part structure that is part of a central nervous system." [OBOL:automatic] subset: upper_level synonym: "cell part cluster of neuraxis" EXACT [FMA:83143] synonym: "neuraxis layer" EXACT [FMA:83143] xref: FMA:83143 is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0011216 name: organ system subdivision def: "A subdivision of an anatomical system." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: human_reference_atlas subset: upper_level xref: FBbt:00007330 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67509 xref: SCTID:91690000 is_a: UBERON:0010000 {source="FBbt"} ! multicellular anatomical structure relationship: part_of UBERON:0000467 ! anatomical system relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011217 name: serratus dorsalis muscle synonym: "serratus dorsalis" EXACT [] synonym: "serratus posterior" EXACT [FMA:13400] synonym: "serratus posterior muscle" EXACT [FMA:13400] xref: EMAPA:36269 xref: FMA:13400 xref: SCTID:244934006 is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column [Term] id: UBERON:0011218 name: spinalis cervicis muscle def: "Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column." [BTO:0002623] comment: The Spinalis cervicis (Spinalis colli) is an inconstant muscle, which arises from the lower part of the ligamentum nuchæ, the spinous process of the seventh cervical, and sometimes from the spinous processes of the first and second thoracic vertebrae, and is inserted into the spinosus process of the axis, and occasionally into the spinous processes of the two vertebrae below it. [Wikipedia:Spinalis#Spinalis_cervivis] subset: human_reference_atlas synonym: "musculus spinalis cervicis" RELATED [BTO:0002623] synonym: "spinal muscle of neck" EXACT [BTO:0002623] xref: BTO:0002623 xref: FMA:22770 xref: SCTID:244864004 is_a: UBERON:0011013 {source="BTO"} ! spinalis muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011219 name: longissimus lumborum muscle def: "Lumbar muscle that extends and rotates the vertebral column." [BTO:0001925] synonym: "longissimus lumborum" EXACT [MA:0002338] synonym: "musculus longissimus lumborum" RELATED [BTO:0001925] xref: BTO:0001925 xref: EMAPA:37652 {source="MA:th"} xref: MA:0002338 xref: NCIT:C52954 xref: UMLS:C1708736 {source="ncithesaurus:Longissimus_Lumborum"} is_a: UBERON:0000392 ! longissimus muscle [Term] id: UBERON:0011220 name: mastoid process of temporal bone def: "The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast." [Wikipedia:Mastoid_process] subset: pheno_slim synonym: "mastoid" RELATED [Wikipedia:Mastoid_process] synonym: "mastoid process" EXACT [FMA:52872] synonym: "mastoid process of skull" EXACT [] synonym: "processus mastoideus ossis temporalis" RELATED [Wikipedia:Mastoid_process] xref: FMA:52872 xref: NCIT:C12503 xref: SCTID:304336002 xref: UMLS:C0446908 {source="ncithesaurus:Mastoid_Process"} xref: Wikipedia:Mastoid_process is_a: UBERON:0000075 {source="ncithesaurus"} ! subdivision of skeletal system relationship: part_of UBERON:0001678 {source="ncithesaurus"} ! temporal bone [Term] id: UBERON:0011221 name: ora serrata of retina def: "The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae." [Wikipedia:Ora_serrata] synonym: "ora ciliaris retina" RELATED [Wikipedia:Ora_serrata] synonym: "ora ciliaris retinae" RELATED [Wikipedia:Ora_serrata] synonym: "ora serrata" EXACT [FMA:58600] synonym: "ora serrata retinae" EXACT OMO:0003011 [FMA:TA] xref: FMA:58600 xref: SCTID:280612002 xref: Wikipedia:Ora_serrata is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0011222 name: intra-ocular muscle synonym: "intrinsic muscle of eyeball" EXACT [] synonym: "intrinsic ocular muscle" EXACT [EMAPA:18808] xref: AAO:0010038 xref: EMAPA:18808 xref: FMA:49150 is_a: UBERON:0004277 ! eye muscle relationship: part_of UBERON:0003386 {source="EMAPA"} ! smooth muscle of eye property_value: external_definition "Muscles within the eye (bulbus oculi).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010038", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0011233 name: synovial membrane of synovial tendon sheath def: "Synovial sac which surrounds parts of one or more tendons. Examples: synovial tendon sheath of manual digit 2, radial bursa." [FMA:45087, Wikipedia:Synovial_sheath] comment: Alternate def: A synovial sheath is a layer of a tendon sheath containing tendons in the hand and foot. They lie internal to the fibrous tendon sheaths. An example is the common synovial sheath for the flexor tendons. [Wikipedia:Synovial_sheath] synonym: "synovium" BROAD [BTO:0001823] xref: BTO:0001823 xref: FMA:40878 xref: Wikipedia:Synovial_sheath is_a: UBERON:0007616 ! layer of synovial tissue [Term] id: UBERON:0011234 name: fibrous membrane of synovial tendon sheath xref: FMA:40877 is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0011236 name: deep fascia def: "Deep fascia (or 'investing fascia') is a layer of fascia which can surround individual muscles, and divide groups of muscles into compartments. This is the dense fibrous connective tissue that interpenetrates and surrounds the muscles, bones, nerves and blood vessels of the body. It provides connection and communication in the form of aponeuroses, ligaments, tendons, retinacula, joint capsules, and septa. The deep fasciae envelop all bone; cartilage, and blood vessels and become specialized in muscles and nerves. The high density of collagen fibers is what gives the deep fascia its strength and integrity. The amount of elastin fiber determines how much extensibility and resilience it will have." [Wikipedia:Deep_fascia] synonym: "deep fasciae" RELATED OMO:0003004 [Wikipedia:Deep_fascia] synonym: "deep investing fascia" NARROW [Wikipedia:Deep_fascia] synonym: "fascia of muscles" RELATED [Wikipedia:Deep_fascia] synonym: "fascia profunda" EXACT OMO:0003011 [Wikipedia:Deep_fascia] synonym: "investing fascia" RELATED [Wikipedia:Deep_fascia] xref: FMA:27935 xref: NCIT:C32435 xref: UMLS:C1511746 {source="ncithesaurus:Deep_Fascia"} xref: Wikipedia:Deep_fascia is_a: UBERON:0008982 ! fascia [Term] id: UBERON:0011237 name: visceral fascia def: "Fascia that suspends a visceral organ." [http://orcid.org/0000-0002-6601-2165] comment: Visceral fascia suspends the organs within their cavities and wraps them in layers of connective tissue membranes. Each of the organs is covered in a double layer of fascia; these layers are separated by a thin serous membrane. The outermost wall of the organ is known as the parietal layer The skin of the organ is known as the visceral layer. The organs have specialized names for their visceral fasciae. In the brain, they are known as meninges; in the heart they are known as pericardia; in the lungs, they are known as pleura; and in the abdomen, they are known as peritonea. [Wikipedia:Visceral_fascia] synonym: "parietal fascia" RELATED [Wikipedia:Visceral_fascia] xref: FMA:76754 xref: Wikipedia:Visceral_fascia is_a: UBERON:0008982 ! fascia property_value: external_ontology_notes "FMA considers parietal fascia a different class" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011238 name: mesethmoid bone def: "An ossified mesethmoid element." [http://orcid.org/0000-0002-6601-2165] synonym: "ethmoid" RELATED [TAO:0000323] xref: TAO:0000323 xref: ZFA:0000323 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0010892 ! mesethmoid element is_a: UBERON:0011164 ! neurocranium bone property_value: external_definition "Endochondral bone that extends forward from the frontal bones and articulates posterolaterally with the lateral ethmoids and the vomer and parasphenoid ventrally. The mesethmoid is an unpaired bone[TAO:0000323]." xsd:string {source="TAO:0000323"} [Term] id: UBERON:0011241 name: ethmoid region def: "The most anterior region of the braincase. Provides structural support for peripheral olfactory organ." [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, UBERONREF:0000007] xref: AAO:0000986 is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0003112 ! olfactory region property_value: curator_notes "currently this is not restricted to skeletal elements, unlike UBERONREF:0000007" xsd:string [Term] id: UBERON:0011242 name: ethmoid cartilage def: "Region between capsules formed by anterior tips of neurocranial trabeculae." [ISBN:0073040584] subset: efo_slim synonym: "ethmoid cartilages" EXACT OMO:0003004 [TAO:0001405] synonym: "ethmoid plate" RELATED [TAO:0001405] xref: AAO:0010134 xref: EFO:0003685 xref: TAO:0001405 xref: ZFA:0001405 is_a: UBERON:0003932 {source="TAO"} ! cartilage element of chondrocranium relationship: develops_from UBERON:0005945 {source="ISBN:0073040584"} ! neurocranial trabecula relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region property_value: external_definition "Anterior wall of the braincase.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010134", ontology="AAO", source="AAO:EJS"} property_value: external_definition "Chondrocranium cartilage that is initially plate-like and formed from the anterior fusion of the trabecula crani. The ethmoid cartilage is paired.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001405", ontology="TAO", source="ZFIN:curator"} property_value: external_ontology_notes "We assume the AAO structure is cartilage" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0011244 name: perpendicular plate of ethmoid def: "The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves." [Wikipedia:Perpendicular_plate_of_ethmoid_bone] synonym: "lamina perpendicularis (os ethmoidale)" EXACT [FMA:52891] synonym: "lamina perpendicularis of ethmoid bone" EXACT [FMA:52891] synonym: "lamina perpendicularis ossis ethmoidalis" RELATED [Wikipedia:Perpendicular_plate_of_ethmoid_bone] synonym: "perpendicular plate" BROAD [EMAPA:25114] synonym: "perpendicular plate of the ethmoid bone" RELATED [Wikipedia:Perpendicular_plate_of_ethmoid_bone] synonym: "vertical plate of the ethmoid bone" RELATED [Wikipedia:Perpendicular_plate_of_ethmoid_bone] xref: EMAPA:25114 xref: FMA:52891 xref: MA:0003126 xref: SCTID:369005006 xref: Wikipedia:Perpendicular_plate_of_ethmoid_bone is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ relationship: part_of UBERON:0001679 {source="FMA"} ! ethmoid bone [Term] id: UBERON:0011245 name: infra-orbital canal of maxilla def: "A canal through the maxilla that is connects the infra-orbital groove and foramen and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] synonym: "canalis infra-orbitalis" EXACT OMO:0003011 [FMA:59048] synonym: "canalis infraorbitalis" EXACT OMO:0003011 [FMA:59048] synonym: "infra-orbital canal" BROAD [FMA:59048] synonym: "infraorbital canal" BROAD [Wikipedia:Infraorbital_canal] xref: FMA:59048 xref: Wikipedia:Infraorbital_canal is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0011246 name: procoracoid bone synonym: "anterior coracoid" RELATED [ISBN:0073040584] synonym: "anterior coracoid bone" RELATED [ISBN:0073040584] synonym: "precoracoid" RELATED [] synonym: "precoracoid bone" RELATED [ISBN:0073040584] synonym: "procoracoid" RELATED [] synonym: "procoracoid process" NARROW [] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0011248 ! procoracoid element relationship: develops_from UBERON:0011247 ! procoracoid cartilage property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/79/P.gigas_forelimb.jpg" xsd:anyURI property_value: editor_note "VSAO sais that the procoracoid+coracoid are homologous to the teleost coracoid. Consider adding a separate class for posterior coracoid." xsd:string property_value: homology_notes "Kardong states that the procoracoid (or the anterior part of the procoracoid) is homologous to the coracoid, but this is controversial" xsd:string {is_about="UBERON:0004743", source="ISBN:0073040584"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/119" xsd:anyURI property_value: taxon_notes "In primitive synapsis 3 centers develop in the shoulder: the dorsal center gives rise to the scapula and the two ventral centers produce an anterior coracoid (procoracoid) and posterior coracoid (coracoid)" xsd:string [Term] id: UBERON:0011247 name: procoracoid cartilage is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0011248 ! procoracoid element [Term] id: UBERON:0011248 name: procoracoid element def: "Endochondral element of pectoral girdle, positioned posterior to the clavicle and anterior to the coracoid." [https://github.com/obophenotype/uberon/issues/104] synonym: "anterior coracoid" RELATED [ISBN:0073040584] synonym: "precoracoid" RELATED [AAO:0000760, ISBN:0073040584] synonym: "procoracoid" EXACT [AAO:0000760] xref: AAO:0000760 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000760", ontology="AAO"} property_value: external_definition "Cartilaginous, paired structures located on the anterolateral portions of the zonal area of the pectoral girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000760", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0011249 name: appendicular skeletal system def: "Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints." [https://orcid.org/0000-0002-6601-2165] xref: FMA:7484 xref: VSAO:0000306 is_a: UBERON:0000075 ! subdivision of skeletal system property_value: external_definition "Skeletal system which consists of the appendicular skeleton plus associated joints.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000306", ontology="VSAO", source="https://orcid.org/0000-0002-6601-2165"} property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Appendages-and-the-appendicular-skeleton" xsd:anyURI [Term] id: UBERON:0011250 name: autopod bone def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002428 ! limb bone is_a: UBERON:0015063 ! autopod endochondral element relationship: develops_from UBERON:0015064 ! autopod cartilage property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] id: UBERON:0011251 name: levator claviculae muscle def: "A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle." [Wikipedia:Levator_claviculae_muscle] synonym: "cleidocervicalis" EXACT [Wikipedia:Levator_claviculae_muscle] synonym: "cleidocervicalis muscle" EXACT [Wikipedia:Levator_claviculae_muscle] synonym: "levator claviculae" EXACT [Wikipedia:Levator_claviculae_muscle] synonym: "musculus levator claviculae" EXACT OMO:0003011 [Wikipedia:Levator_claviculae_muscle] synonym: "omocervicalis" EXACT [Wikipedia:Levator_claviculae_muscle] synonym: "pars cervicalis" RELATED [] synonym: "tracheloacromial muscle" EXACT [Wikipedia:Levator_claviculae_muscle] xref: Wikipedia:Levator_claviculae_muscle is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0004518 ! muscle of vertebral column relationship: part_of UBERON:0011364 ! cleidocephalicus muscle property_value: external_definition "Cleidocervicalis is one of two muscles, which make up the cleidocephalic component of the complex brachiocephalic muscle. It is a thin triangular muscle which has a broad origin on the median raphe of the mid dorsal aspect of the neck. The muscle is bounded caudally by the trapezius and cranially by the occipital component of the sternocephalicus . The cleidocervicalis tapers as it passes ventrally across the side of the neck to insert into the clavicular tendon. It is innervated by the accessory nerve. The brachiocephalic complex advances the limb, extends the shoulder joint and fixes the neck." xsd:string {source="MURDOCH:378"} property_value: taxon_notes "The levator claviculae is an infrequently recognized anatomical variant in humans, distinguished from, for example, cervical adenopathy or a thrombosed vein, but a normal muscle in lower mammals and anthropoids. In humans, when present, it often appears unilaterally, most commonly on the left side, or bilaterally." xsd:string {source="WP"} [Term] id: UBERON:0011252 name: scent gland def: "Scent glands are exocrine glands found in most mammals. They produce semi-viscous secretions which contain pheromones and other semiochemical compounds. These odor-messengers indicate information such as status, territory marking, mood, and sexual power. The odor may be subliminal-not consciously detectable. Though it is not their primary function, the salivary glands may also function as scent glands in some animals." [Wikipedia:Scent_gland] xref: BTO:0002068 xref: MESH:D012543 xref: Wikipedia:Scent_gland is_a: UBERON:0002365 ! exocrine gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/85/Civetglands.png" xsd:anyURI property_value: external_definition "Exocrine glands in animals which secrete scents which either repel or attract other animals, e.g. perianal glands of skunks, anal glands of weasels, musk glands of foxes, ventral glands of wood rats, and dorsal glands of peccaries[MESH:A13.820]." xsd:string {source="MESH:A13.820"} [Term] id: UBERON:0011253 name: obsolete gland of anal sac comment: Obsoleted as it seems to refer to the same concept as 'gland of anal canal'. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/3159" xsd:anyURI is_obsolete: true replaced_by: UBERON:0004760 [Term] id: UBERON:0011255 name: Eimer's organ def: "A sensory organ in which the epidermis is modified to form bulbous papillae. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue." [Wikipedia:Eimer's_organ] xref: Wikipedia:Eimer's_organ is_a: UBERON:0000020 {source="Wikipedia"} ! sense organ relationship: part_of UBERON:0000412 ! dermal papilla property_value: taxon_notes "present in many moles, and are particularly common in the star-nosed mole, which bears 30,000 of them on its unique tentacled snout" xsd:string [Term] id: UBERON:0011256 name: rhinarium def: "Moist, hairless, crenelated area around nostrils of some mammals." [Wikipedia:Rhinarium] xref: Wikipedia:Rhinarium is_a: UBERON:0003102 ! surface structure relationship: never_in_taxon NCBITaxon:9475 relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0007827 ! external nose property_value: taxon_notes "Absent in Tarsiers" xsd:string [Term] id: UBERON:0011263 name: femoral gland def: "A gland arranged along a row on the underside of the hindlimb in some lizards[Kardong]." [ISBN:0073040584] is_a: UBERON:0019319 ! exocrine gland of integumental system relationship: part_of UBERON:0000376 {source="ISBN:0073040584"} ! hindlimb stylopod relationship: part_of UBERON:0002199 {source="ISBN:0073040584"} ! integument [Term] id: UBERON:0011264 name: femoral pore def: "Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh." [Wikipedia:Femoral_pore] xref: Wikipedia:Femoral_pore is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0011263 ! femoral gland property_value: taxon_notes "Femoral pores are present in all genera in the families Cordylidae, Crotaphytidae, Hoplocercidae, Iguanidae, Phrynosomatidae, and Xantusiidae. They are absent in all genera in the Anguidae, Chamaeleonidae, Dibamidae, Helodermatidae, Scincidae, Xenosauridae, and Varanidae families.[1] They are present in other lizards and amphisbaenians quite variably, some geckoes, Phelsuma, for example have these pores, others in the same family do not" xsd:string {source="WP"} [Term] id: UBERON:0011265 name: carpometacarpal joint of digit 1 def: "A carpometacarpal joint that connects to metacarpal 1." [Wikipedia:Carpometacarpal_joint#Thumb] subset: pheno_slim synonym: "carpometacarpal joint of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "carpometacarpal joint of pollex" EXACT [FMA:35421] synonym: "carpometacarpal joint of the thumb" RELATED [Wikipedia:Carpometacarpal_joint#Thumb] synonym: "carpometacarpal joint of thumb" EXACT [FMA:35421] synonym: "TMJ" RELATED INCONSISTENT [Wikipedia:Carpometacarpal_joint#Thumb] synonym: "trapeziometacarpal joint" RELATED [Wikipedia:Carpometacarpal_joint#Thumb] xref: FMA:35421 xref: SCTID:361843007 xref: Wikipedia:Carpometacarpal_joint#Thumb is_a: UBERON:0011119 ! carpometacarpal joint property_value: taxon_notes "In humans it connects the trapezium to the first metacarpal bone, plays an irreplaceable role in the normal functioning of the thumb. The most important joint connecting the wrist to the metacarpus, osteoarthritis of the TMC is a severely disabling condition; up to twenty times more common among old women than in average" xsd:string {source="WP"} [Term] id: UBERON:0011266 name: obsolete tendon of auricularis superior comment: Made obsolete as the ear muscle inserts into cartilage and aponeurosis without any intervening tendon synonym: "auricularis superior tendon" EXACT [FMA:53843] xref: FMA:53843 is_obsolete: true [Term] id: UBERON:0011267 name: quadratojugal bone def: "The quadratojugal is a small jaw bone that is present in most amphibians, reptiles, and birds, but has been lost in mammals. It is connected to the jugal as well as other bones, though these may vary with species. The quadratojugal bone is a small bone between the cheek and otic notch (Lecointre 380). Squamates (lizards and snakes) lack a quadratojugal bone (Schwenk 193)." [Wikipedia:Quadratojugal_bone] synonym: "quadratjochbeine" RELATED [AAO:0000532] synonym: "quadrato-jugals" RELATED [AAO:0000532] synonym: "quadrato-maxillare" RELATED [AAO:0000532] synonym: "quadratojugal" EXACT [AAO:0000532] synonym: "quadratojugale" RELATED [AAO:0000532] synonym: "tympano maleaux" RELATED [AAO:0000532] xref: AAO:0000532 xref: Wikipedia:Quadratojugal_bone is_a: UBERON:0002514 {source="AAO-def"} ! intramembranous bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: never_in_taxon NCBITaxon:40674 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:8509 {source="Wikipedia"} relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/6e/Archaeopteryx_skull.png" xsd:anyURI property_value: external_definition "Paired intramembranous bones that completes the maxillary arch posteriorly; they appear at the end of, or just after, metamorphosis[AAO:0000532]." xsd:string {source="AAO:0000532"} [Term] id: UBERON:0011268 name: sublingua def: "A secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands." [Wikipedia:Sublingua] synonym: "second tongue" RELATED [Wikipedia:Sublingua] synonym: "under-tongue" RELATED [Wikipedia:Sublingua] xref: Wikipedia:Sublingua is_a: UBERON:0013765 ! digestive system element relationship: never_in_taxon NCBITaxon:9606 {source="Wikipedia"} relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0011270 name: dorsal trunk def: "The part of the trunk that is in the dorsum[cjm]." [UBERONREF:0000006, Wikipedia:Human_back] synonym: "back of trunk" EXACT [FMA:25056] synonym: "dorsal part of trunk" EXACT [] synonym: "dorsum of trunk" EXACT [FMA:25056] synonym: "trunk back" EXACT [FMA:25056] xref: EMAPA:35162 xref: FMA:25056 xref: MA:0000020 xref: Wikipedia:Human_back is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk relationship: part_of UBERON:0001137 {source="FMA"} ! dorsum property_value: taxon_notes "In humans, the subdivision of trunk which is demarcated from the trunk proper by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall; together with the trunk proper, it constitutes the trunk[FMA]" xsd:string [Term] id: UBERON:0011271 name: caudal-sacral region of vertebral column def: "Subdivision of vertebral column that is posterior to the sacral region and anterior to the caudal region." [UBERONREF:0000006] synonym: "caudal-sacral vertebrae series" EXACT [] synonym: "cloacal vertebrae series" RELATED [http://orcid.org/0000-0002-6601-2165] xref: AAO:0000080 is_a: UBERON:0006077 ! subdivision of vertebral column property_value: editor_note "Definition to be reviewed for generality across tetrapods. Typically we regard the caudal region as immediately following the sacral region, with the caudal (tail) region defined as post-anal." xsd:string property_value: external_definition "Region of the vertebral column posterior to the sacrum consisting of two to four vertebrae. The last of these vertebrae is distinguished by the possession of a well-developed haemal arch; it supports the posterior part of the cloaca and marks the posterior limit of the trunk.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000080", ontology="AAO", source="AAO:Duellman_and_Treub_1994"} [Term] id: UBERON:0011272 name: embryonic skin basal layer synonym: "basal cell layer of skin" RELATED [] synonym: "outer epithelium of body" RELATED [Wikipathways:WP2062] xref: EHDAA2:0001845 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0002199 {source="EHDAA2"} ! integument property_value: editor_note "compare with 'stratum basale of epidermis'. This class is the source for many adult structures - see WP2062. See also: 'enveloping layer of ectoderm'" xsd:string [Term] id: UBERON:0011273 name: nail of manual digit 1 def: "A nail that is part of a manual digit 1." [OBOL:automatic] subset: pheno_slim synonym: "claw of digit 1 of fore-paw" EXACT [EMAPA:18734] synonym: "nail of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of thumb" EXACT [FMA:54329] synonym: "nail plate of thumb" EXACT [FMA:54329] synonym: "thumb nail" EXACT [FMA:54329] xref: EMAPA:18734 xref: FMA:54329 xref: SCTID:181584008 is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit relationship: part_of UBERON:0001463 ! manual digit 1 [Term] id: UBERON:0011274 name: nail of manual digit 2 def: "A nail that is part of a manual digit 2." [OBOL:automatic] synonym: "claw of digit 2 of fore-paw" EXACT [EMAPA:18735] synonym: "index finger nail" EXACT [FMA:54332] synonym: "nail of index finger" EXACT [FMA:54332] synonym: "nail of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of second finger" EXACT [FMA:54332] synonym: "nail plate of index finger" EXACT [FMA:54332] xref: EMAPA:18735 xref: FMA:54332 xref: SCTID:181580004 is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit relationship: part_of UBERON:0003622 ! manual digit 2 [Term] id: UBERON:0011275 name: nail of manual digit 3 def: "A nail that is part of a manual digit 3." [OBOL:automatic] synonym: "claw of digit 3 of fore-paw" EXACT [EMAPA:18736] synonym: "middle finger nail" EXACT [FMA:54335] synonym: "nail of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of middle finger" EXACT [FMA:54335] synonym: "nail of third finger" EXACT [FMA:54335] synonym: "nail plate of middle finger" EXACT [FMA:54335] xref: EMAPA:18736 xref: FMA:54335 xref: SCTID:181581000 is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit relationship: part_of UBERON:0003623 ! manual digit 3 [Term] id: UBERON:0011276 name: nail of manual digit 4 def: "A nail that is part of a manual digit 4." [OBOL:automatic] synonym: "claw of digit 4 of fore-paw" EXACT [EMAPA:18737] synonym: "nail of fourth finger" EXACT [FMA:54338] synonym: "nail of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of ring finger" EXACT [FMA:54338] synonym: "nail plate of ring finger" EXACT [FMA:54338] synonym: "ring finger nail" EXACT [FMA:54338] xref: EMAPA:18737 xref: FMA:54338 xref: SCTID:181582007 is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit relationship: part_of UBERON:0003624 ! manual digit 4 [Term] id: UBERON:0011277 name: nail of manual digit 5 def: "A nail that is part of a manual digit 5." [OBOL:automatic] subset: pheno_slim synonym: "claw of digit 5 of fore-paw" EXACT [EMAPA:18738] synonym: "little finger nail" EXACT [FMA:54341] synonym: "nail of fifth finger" EXACT [FMA:54341] synonym: "nail of little finger" RELATED [FMA:54341] synonym: "nail of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail plate of little finger" EXACT [FMA:54341] xref: EMAPA:18738 xref: FMA:54341 xref: SCTID:181583002 is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit relationship: part_of UBERON:0003625 ! manual digit 5 [Term] id: UBERON:0011278 name: nail of pedal digit 1 def: "A nail that is part of a pedal digit 1." [OBOL:automatic] subset: pheno_slim synonym: "big toe nail" EXACT [FMA:54344] synonym: "claw of digit 1 of hind-paw" EXACT [EMAPA:18739] synonym: "nail of big toe" EXACT [FMA:54344] synonym: "nail of first toe" RELATED [FMA:54344] synonym: "nail of great toe" EXACT [FMA:54344] synonym: "nail of pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail plate of big toe" EXACT [FMA:54344] xref: EMAPA:18739 xref: FMA:54344 xref: SCTID:181592004 is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit relationship: part_of UBERON:0003631 ! pedal digit 1 [Term] id: UBERON:0011279 name: nail of pedal digit 2 def: "A nail that is part of a pedal digit 2." [OBOL:automatic] synonym: "claw of digit 2 of hind-paw" EXACT [EMAPA:18740] synonym: "nail of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of second toe" EXACT [FMA:54347] synonym: "nail plate of second toe" EXACT [FMA:54347] synonym: "second toe nail" EXACT [FMA:54347] xref: EMAPA:18740 xref: FMA:54347 xref: SCTID:181593009 is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit relationship: part_of UBERON:0003632 ! pedal digit 2 [Term] id: UBERON:0011280 name: nail of pedal digit 3 def: "A nail that is part of a pedal digit 3." [OBOL:automatic] synonym: "claw of digit 3 of hind-paw" EXACT [EMAPA:18741] synonym: "nail of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of third toe" EXACT [FMA:54350] synonym: "nail plate of third toe" EXACT [FMA:54350] synonym: "third toe nail" EXACT [FMA:54350] xref: EMAPA:18741 xref: FMA:54350 xref: SCTID:181594003 is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit relationship: part_of UBERON:0003633 ! pedal digit 3 [Term] id: UBERON:0011281 name: nail of pedal digit 4 def: "A nail that is part of a pedal digit 4." [OBOL:automatic] synonym: "claw of digit 4 of hind-paw" EXACT [EMAPA:18742] synonym: "fourth toe nail" EXACT [FMA:54353] synonym: "nail of fourth toe" EXACT [FMA:54353] synonym: "nail of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail plate of fourth toe" EXACT [FMA:54353] xref: EMAPA:18742 xref: FMA:54353 xref: SCTID:181595002 is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit relationship: part_of UBERON:0003634 ! pedal digit 4 [Term] id: UBERON:0011282 name: nail of pedal digit 5 def: "A nail that is part of a pedal digit 5." [OBOL:automatic] subset: pheno_slim synonym: "claw of digit 5 of hind-paw" EXACT [EMAPA:18743] synonym: "little toe nail" EXACT [FMA:54356] synonym: "nail of fifth toe" EXACT [FMA:54356] synonym: "nail of little toe" EXACT [FMA:54356] synonym: "nail of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail plate of little toe" EXACT [FMA:54356] xref: EMAPA:18743 xref: FMA:54356 xref: SCTID:181596001 is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit relationship: part_of UBERON:0003635 ! pedal digit 5 [Term] id: UBERON:0011283 name: epoophoron def: "A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube." [Wikipedia:Epoophoron] synonym: "epooephoron" RELATED [Wikipedia:Epoophoron] synonym: "epoöphoron" RELATED [Wikipedia:Epoophoron] synonym: "organ of rosenmueller" RELATED [Wikipedia:Epoophoron] synonym: "organ of Rosenmuller" EXACT [FMA:18691] synonym: "organ of rosenmuller" RELATED [Wikipedia:Epoophoron] synonym: "organ of Rosenmüller" RELATED [Wikipedia:Epoophoron] synonym: "parovarium" RELATED [Wikipedia:Epoophoron] xref: FMA:18691 xref: Wikipedia:Epoophoron is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0011287 name: rostral organ def: "A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelacanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve." [Wikipedia:Rostral_organ] comment: classification as electric organ is putative xref: Wikipedia:Rostral_organ is_a: UBERON:0010521 ! electroreceptor organ relationship: part_of UBERON:0011241 ! ethmoid region [Term] id: UBERON:0011288 name: stomochord def: "A flexible, unpaired, hollow tube found in hemichordates that arises in embryonic development as an outpocketing from the roof of the embryonic gut anterior to the pharynx. In adults, they extend dorsally from the pharynx into the probiscis, and serve to communicate with the oral cavity." [PMID:25214631, Wikipedia:Stomochord] synonym: "stomatochord" RELATED [] xref: Wikipedia:Stomochord is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0007026 ! presumptive gut property_value: structure_notes "Their walls are composed primarily of epithelial cells, but ciliated and glandular cells are also present." xsd:string [Term] id: UBERON:0011289 name: pharyngobasilar fascia def: "The pharyngeal aponeurosis (or pharyngobasilar fascia, or fibrous coat), is situated between the mucous and muscular layers. It is thick above where the muscular fibers are wanting, and is firmly connected to the basilar portion of the occipital and the petrous portions of the temporal bones. As it descends it diminishes in thickness, and is gradually lost. It is strengthened posteriorly by a strong fibrous band, which is attached above to the pharyngeal spine on the under surface of the basilar portion of the occipital bone, and passes downward, forming a median raphe, which gives attachment to the Constrictores pharyngis." [Wikipedia:Pharyngobasilar_fascia] synonym: "pharyngeal aponeurosis" EXACT [FMA:55074] synonym: "pharyngeal aponeurosis" RELATED [Wikipedia:Pharyngobasilar_fascia] xref: FMA:55074 xref: SCTID:16675008 xref: Wikipedia:Pharyngobasilar_fascia is_a: UBERON:0006614 {source="FMA"} ! aponeurosis relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0011298 name: submucosa of fallopian tube def: "The submucous layer of the wall of the uterine tube." [BTO:0002116] synonym: "submucosa of uterine tube" EXACT [] synonym: "submucous layer of uterine tube" RELATED [BTO:0002116] synonym: "tela submucosa tubae uterinae" EXACT OMO:0003011 [BTO:0002116] synonym: "uterine submucosa" RELATED [] xref: BTO:0002116 xref: SCTID:245489008 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003889 ! fallopian tube [Term] id: UBERON:0011299 name: white matter of telencephalon alt_id: UBERON:0013202 alt_id: UBERON:0022550 def: "A partion of white matter that is part of a telencephalon. This can be further subdivided in some species, for example, into hemisphere white matter and the corpus callosum." [https://orcid.org/0000-0002-6601-2165] synonym: "predominantly white regional part of telencephalon" EXACT [BIRNLEX:1075] synonym: "telencephalic tract/commissure" EXACT [ZFA:0000597] synonym: "telencephalic tracts" NARROW [TAO:0000597] synonym: "telencephalic white matter" EXACT [HBA:TELWM] xref: BIRNLEX:1075 xref: FMA:83930 xref: HBA:9219 xref: HBA:9230 xref: TAO:0000597 xref: ZFA:0000597 is_a: UBERON:0019261 ! white matter of forebrain relationship: part_of UBERON:0001893 ! telencephalon property_value: external_definition "CNS white matter that is part of the telencephalon[ZFA:0000597]." xsd:string {source="ZFA:0000597"} [Term] id: UBERON:0011300 name: gray matter of telencephalon alt_id: UBERON:0024186 def: "A portion of gray matter that is part of a telencephalon." [OBOL:automatic] synonym: "predominantly gray regional part of telencephalon" EXACT [BIRNLEX:1067] xref: BIRNLEX:1067 xref: FMA:83911 is_a: UBERON:0019264 ! gray matter of forebrain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0011301 name: manubrium sternum pre-cartilage condensation synonym: "manubrium sterni pre-cartilage condensation" EXACT [EHDAA2:0001063] xref: EHDAA2:0001063 xref: EHDAA:9563 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme relationship: part_of UBERON:0000975 {source="EHDAA2"} ! sternum [Term] id: UBERON:0011302 name: tunicate tunic def: "Outer covering of an animal typically consisting primarily of cellulose (tunicin) in addition to varying amounts of water, protein and carbohydrates. The tunicate is a characteristic feature of Tunicata." [ISBN:0030229073, Wikipedia:Ascidiacea#Anatomy] xref: BSA:0000042 xref: Wikipedia:Ascidiacea#Anatomy is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002416 ! integumental system relationship: part_of UBERON:0007023 ! adult organism property_value: taxon_notes "In some species tunicin occurs in small amounts. Some species calcium salts are deposited as spicules. In ascidians, the tunic is supplied with blood vessels." xsd:string [Term] id: UBERON:0011303 name: lamprey sucker xref: http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000165 ! mouth property_value: function_notes "attachment" xsd:string [Term] id: UBERON:0011304 name: tunicate postabdomen def: "Basalmost subdivision of a tunicate containing the heart and reproductive organs." [ISBN:0030229073] is_a: UBERON:0000475 ! organism subdivision property_value: taxon_notes "Most ascidians lack a postabdomen" xsd:string [Term] id: UBERON:0011305 name: superficial part of temporalis def: "The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia." [MFMO:0000087] synonym: "anterior temporal" EXACT [MFMO:0000087] synonym: "temporal muscle anterolateral part" EXACT [MFMO:0000087] synonym: "temporales" EXACT [MFMO:0000087] synonym: "temporalis anterior head" EXACT [MFMO:0000087] synonym: "temporalis pars anterior" EXACT [MFMO:0000087] synonym: "temporalis pars superficialis" EXACT [MFMO:0000087] xref: MFMO:0000087 is_a: UBERON:0034944 ! zone of organ [Term] id: UBERON:0011306 name: deep part of temporalis def: "The deep temporalis muscle is a separable part of the temporalis muscle that that attaches to the bony wall of the braincase and is deep to the superficial temporalis." [MFMO:0000086] synonym: "medial temporal" EXACT [MFMO:0000086] synonym: "posterior temporal" EXACT [MFMO:0000086] synonym: "temporal muscle posterior part" EXACT [MFMO:0000086] synonym: "temporalis bbHauptmassebb" EXACT [MFMO:0000086] synonym: "temporalis lamina profunda" EXACT [MFMO:0000086] synonym: "temporalis pars posterior" EXACT [MFMO:0000086] synonym: "temporalis pars profunda" EXACT [MFMO:0000086] synonym: "temporalis posterior head" EXACT [MFMO:0000086] xref: MFMO:0000086 is_a: UBERON:0034944 ! zone of organ [Term] id: UBERON:0011307 name: suprazygomatic part of temporalis def: "The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch." [MFMO:0000088] synonym: "temporalis pars suprazygomatica" EXACT [MFMO:0000088] synonym: "zygomatic temporalis" EXACT [MFMO:0000088] xref: MFMO:0000088 is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle [Term] id: UBERON:0011308 name: pars reflexa of masseter def: "The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible." [FEED:FEED] synonym: "masseter, pars reflexa" EXACT [FEED:FEED] synonym: "pars reflexa" BROAD [FEED:FEED] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011140 ! superficial part of masseter muscle property_value: external_definition "The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0011309 name: body of mandible def: "The zone of the mandible that carries the teeth." [http://www.avdc.org/Nomenclature.pdf] subset: human_reference_atlas synonym: "body of the mandible" RELATED [Wikipedia:Body_of_mandible] synonym: "corpus mandibulae" EXACT OMO:0003011 [http://www.avdc.org/Nomenclature.pdf] synonym: "mandibular body" EXACT [FMA:52827] xref: FMA:52827 xref: SCTID:244684002 xref: Wikipedia:Body_of_mandible is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001684 {source="FMA"} ! mandible relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011310 name: masseteric fossa def: ".The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryM.html] synonym: "masseteric cavity" RELATED [] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001684 {source="FMA"} ! mandible property_value: external_definition "fossa on the lateral surface of the mandible, located in the superior part of the ascending process.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0011311 name: hyoepiglottic ligament def: "An elastic band connecting the anterior surface of the epiglottis to the upper border of the body of the hyoid bone." [Wikipedia:Hyoepiglottic_ligament] synonym: "hyo-epiglottic ligament" EXACT [FMA:55227] synonym: "igamentum hyoepiglotticum" EXACT OMO:0003011 [Wikipedia:Hyoepiglottic_ligament] xref: FMA:55227 xref: NCIT:C32751 xref: SCTID:279552007 xref: UMLS:C0225515 {source="ncithesaurus:Hyoepiglottic_Ligament"} xref: Wikipedia:Hyoepiglottic_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx [Term] id: UBERON:0011312 name: hyoepiglottic muscle comment: Developed in mammals other than human. EDITOR NOTE: TODO add relationship to hyoepiglottic ligament. synonym: "hyo-epiglottic muscle" EXACT [] synonym: "hyoepiglotticus" EXACT [] synonym: "hyoepiglottus" EXACT [] is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0011313 name: posterior subdivision of masseter synonym: "masseter, posterior" EXACT [FEED:FEED] is_a: UBERON:0034944 ! zone of organ property_value: external_definition "The posterior masseter is a separable part of the deep masseter muscle that attaches to the postero-ventral surface of the zygomatic arch.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0011314 name: anterior subdivision of masseter synonym: "masseter, anterior" EXACT [FEED:FEED] is_a: UBERON:0034944 ! zone of organ property_value: external_definition "The anterior masseter is a separable part of the masseter muscle that is attached to anterior root of zygomatic arch.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0011315 name: digastric branch of facial nerve def: "The digastric branch of facial nerve arises close to the stylomastoid foramen, and divides into several filaments, which supply the posterior belly of the Digastricus; one of these filaments joins the glossopharyngeal nerve." [Wikipedia:Digastric_part_of_facial_nerve] synonym: "branch of facial nerve to posterior belly of digastric" RELATED [FMA:53288] synonym: "digastric branch" BROAD [Wikipedia:Digastric_part_of_facial_nerve] synonym: "digastric branch of facial nerve (CN VII)" EXACT [FEED:FEED] synonym: "facial nerve, digastric branch" EXACT [] synonym: "nerve to posterior belly of digastric" EXACT [FMA:53288] synonym: "ramus digastricus (nervus facialis)" EXACT [FMA:53288] synonym: "ramus digastricus nervus facialis" EXACT OMO:0003011 [FMA:TA] xref: FMA:53288 xref: SCTID:17743006 xref: Wikipedia:Digastric_part_of_facial_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0011316 name: nerve to stylohyoid from facial nerve def: "The stylohyoid branch of facial nerve frequently arises in conjunction with the digastric branch; it is long and slender, and enters the Stylohyoideus about its middle." [Wikipedia:Stylohyoid_part_of_facial_nerve] synonym: "facial nerve stylohyoid branch" EXACT [FMA:53298] synonym: "nerve to stylohyoid" EXACT [FMA:53298] synonym: "ramus stylohyoideus" EXACT [FMA:53298] synonym: "ramus stylohyoideus nervus facialis" EXACT OMO:0003011 [FMA:TA] synonym: "stylodigastric nerve" EXACT [FMA:53298] synonym: "stylohyoid branch" RELATED [Wikipedia:Stylohyoid_part_of_facial_nerve] synonym: "stylohyoid branch of facial nerve" EXACT [FMA:53298] xref: FMA:53298 xref: SCTID:89590005 xref: Wikipedia:Stylohyoid_part_of_facial_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0011317 name: nerve to stylopharyngeus from glossopharyngeal nerve def: "The stylopharyngeal branch of glossopharyngeal nerve is distributed to the Stylopharyngeus." [Wikipedia:Stylopharyngeal_branch_of_glossopharyngeal_nerve] synonym: "branch of glossopharyngeal nerve to stylopharyngeus" EXACT [FMA:53487] synonym: "nerve to stylopharyngeus" EXACT [FMA:53487] synonym: "ramus musculi stylopharyngei nervus glossopharyngei" EXACT OMO:0003011 [FMA:TA] synonym: "stylopharyngeal branch of glossopharyngeal nerve" EXACT [FMA:53487] xref: FMA:53487 xref: SCTID:280294008 xref: Wikipedia:Stylopharyngeal_branch_of_glossopharyngeal_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0011318 name: capsule of temporomandibular joint def: "The articular capsule (capsular ligament) is a thin, loose envelope, attached above to the circumference of the mandibular fossa and the articular tubercle immediately in front; below, to the neck of the condyle of the mandible." [Wikipedia:Capsule_of_temporomandibular_joint] synonym: "articular capsule of temporomandibular joint" EXACT [FMA:57050] synonym: "capsula articularis articulationis temporomandibularis" EXACT OMO:0003011 [Wikipedia:Capsule_of_the_temporomandibular_joint] xref: FMA:57050 xref: MFMO:0000046 xref: SCTID:303404000 xref: Wikipedia:Capsule_of_temporomandibular_joint is_a: UBERON:0001484 ! articular capsule is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0003700 ! temporomandibular joint [Term] id: UBERON:0011319 name: disk of temporomandibular joint def: "The fibrocartilaginous plate that separates the joint into upper and lower cavities." [BTO:0003675, Wikipedia:Articular_disk_of_the_temporomandibular_joint] synonym: "articular disc of temporomandibular joint" EXACT [FMA:57059] synonym: "articular disc of temporomandibular joint" RELATED [BTO:0003675] synonym: "articular disk of temporomandibular joint" EXACT [FMA:57059] synonym: "discus articularis (articulatio temporomandibularis)" EXACT [FMA:57059] synonym: "discus articularis articulationis temporomandibularis" EXACT OMO:0003011 [FMA:TA, Wikipedia:Articular_disk_of_the_temporomandibular_joint] synonym: "discus articularis temporomandibularis" RELATED [BTO:0003675] synonym: "mandibular disk" RELATED [BTO:0003675] synonym: "temporomandibular articular disk" EXACT [BTO:0003675] synonym: "temporomandibular articular disk" RELATED [GAID:273] synonym: "temporomandibular joint disk" RELATED [Wikipedia:Articular_disk_of_the_temporomandibular_joint] xref: BTO:0003675 xref: FMA:57059 xref: MESH:D019224 xref: SCTID:282433007 xref: Wikipedia:Articular_disk_of_the_temporomandibular_joint is_a: UBERON:0007844 {source="FMA"} ! cartilage element is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0003700 {source="BTO"} ! temporomandibular joint [Term] id: UBERON:0011320 name: ligament of temporomandibular joint synonym: "temporomandibular joint ligament" EXACT [FMA:57070] xref: FMA:57070 xref: SCTID:127861009 xref: Wikipedia:Temporomandibular_joint#Ligaments is_a: UBERON:0008846 ! skeletal ligament is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0003700 ! temporomandibular joint [Term] id: UBERON:0011321 name: masseteric nerve def: "A muscular branch of the mandibular nerve passing to the medial surface of the masseter muscle, which it innervates." [http://medical-dictionary.thefreedictionary.com/masseteric+nerve] synonym: "nervus massetericus" EXACT OMO:0003011 [Wikipedia:Masseteric_nerve] xref: FMA:53103 xref: SCTID:280254006 xref: Wikipedia:Masseteric_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0011322 name: mylohyoid nerve def: "A nerve that innervates the mylohyoid muscle and the anterior belly of the digastric muscle." [Wikipedia:Mylohyoid_nerve] synonym: "branch of inferior alveolar nerve to mylohyoid" EXACT [FMA:53247] synonym: "mylodigastric nerve" EXACT [FMA:53247] synonym: "mylohyoid branch of inferior alveolar nerve" EXACT [FMA:53247] synonym: "nerve to mylohyoid" EXACT [FMA:53247] synonym: "nerve to mylohyoid" RELATED [Wikipedia:Mylohyoid_nerve] synonym: "nervus mylohyoideus" EXACT OMO:0003011 [FMA:TA, Wikipedia:Mylohyoid_nerve] xref: BAMS:myhy xref: FMA:53247 xref: SCTID:280269007 xref: Wikipedia:Mylohyoid_nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0011325 name: pharyngeal nerve plexus def: "The pharyngeal plexus is a network of nerve fibers innervating most of the palate, larynx, and pharynx. It is located on the surface of the middle pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] synonym: "pharyngeal nerve plexus" EXACT [FMA:82453] synonym: "pharyngeal plexus of vagus nerve" EXACT [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] synonym: "plexus pharyngeus nervi vagi" EXACT OMO:0003011 [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] synonym: "vagus nerve pharyngeal plexus" EXACT [] xref: FMA:82453 xref: SCTID:369429008 xref: Wikipedia:Pharyngeal_plexus_of_vagus_nerve is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus [Term] id: UBERON:0011326 name: superior laryngeal nerve def: "The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice." [Wikipedia:Superior_laryngeal_nerve] subset: human_reference_atlas synonym: "nervus laryngealis superior" EXACT [FMA:6239] synonym: "nervus laryngeus superior" EXACT OMO:0003011 [Wikipedia:Superior_laryngeal_nerve] synonym: "superior laryngeal branch of inferior vagal ganglion" EXACT [FMA:6239] synonym: "superior laryngeal branch of vagus" EXACT [FMA:6239] xref: BAMS:sln xref: FMA:6239 xref: SCTID:279928006 xref: Wikipedia:Superior_laryngeal_nerve is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: develops_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011327 name: deep temporal nerve def: "The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis." [Wikipedia:Deep_temporal_nerves] synonym: "deep temporal nerve" RELATED [Wikipedia:Deep_temporal_nerves] synonym: "nervi temporales profundi" EXACT OMO:0003004 [FMA:TA] xref: FMA:53187 xref: SCTID:280255007 xref: Wikipedia:Deep_temporal_nerves is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0011332 name: extrinsic tongue pre-muscle mass xref: EMAPA:17884 is_a: UBERON:0005865 ! pre-muscle condensation [Term] id: UBERON:0011342 name: surface of mandible def: "An anatomical surface that is part of a mandible." [OBOL:automatic] synonym: "mandibular surface" EXACT [FMA:57558] xref: FMA:57558 is_a: UBERON:0036215 ! anatomical surface region [Term] id: UBERON:0011343 name: medial surface of mandible synonym: "internal surface of ramus of mandible" RELATED [FMA:59464] synonym: "medial surface of mandibular ramus" NARROW [FMA:59464] synonym: "medial surface of ramus of mandible" EXACT [FMA:59464] xref: FMA:59464 is_a: UBERON:0011342 ! surface of mandible [Term] id: UBERON:0011344 name: lateral surface of mandible synonym: "external surface of ramus of mandible" RELATED [FMA:59463] synonym: "lateral surface of mandibular ramus" BROAD [FMA:59463] synonym: "lateral surface of ramus of mandible" EXACT [FMA:59463] xref: FMA:59463 is_a: UBERON:0011342 ! surface of mandible [Term] id: UBERON:0011345 name: pharyngeal raphe def: "The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors." [Wikipedia:Pharyngeal_raphe] synonym: "raphe pharyngis" EXACT [Wikipedia:Pharyngeal_raphe] xref: FMA:55077 xref: SCTID:179763009 xref: Wikipedia:Pharyngeal_raphe is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001042 ! chordate pharynx property_value: external_ontology_notes "isa anatomical line in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011346 name: palatine raphe def: "A raphe running across the palate, from the palatine uvula to the incisive papilla." [Wikipedia:Palatine_raphe] synonym: "raphe palati" EXACT [Wikipedia:Palatine_raphe] xref: FMA:75111 xref: Wikipedia:Palatine_raphe is_a: UBERON:0003566 ! head connective tissue relationship: part_of UBERON:0001716 ! secondary palate property_value: external_ontology_notes "isa anatomical line in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011347 name: raphe of hard palate def: "A palatine raphe that is part of a hard palate." [OBOL:automatic] xref: SCTID:368683007 is_a: UBERON:0011346 ! palatine raphe relationship: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0011348 name: raphe of soft palate def: "A palatine raphe that is part of a soft palate." [OBOL:automatic] xref: SCTID:245785003 is_a: UBERON:0011346 ! palatine raphe relationship: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0011349 name: pterygomandibular raphe def: "The pterygomandibular raphe (pterygomandibular ligament) is a tendinous band of the buccopharyngeal fascia, attached by one extremity to the hamulus of the medial pterygoid plate, and by the other to the posterior end of the mylohyoid line of the mandible. Its medial surface is covered by the mucous membrane of the mouth. Its lateral surface is separated from the ramus of the mandible by a quantity of adipose tissue. Its posterior border gives attachment to the superior pharyngeal constrictor muscle. Its anterior border attaches to the posterior edge of the buccinator." [Wikipedia:Pterygomandibular_raphe] synonym: "pterygomandibular ligament" RELATED [Wikipedia:Pterygomandibular_raphe] synonym: "pterygomandibular raph%c3%a9" RELATED [Wikipedia:Pterygomandibular_raphe] xref: FMA:55618 xref: SCTID:142713007 xref: Wikipedia:Pterygomandibular_raphe is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000165 ! mouth property_value: external_ontology_notes "isa anatomical line in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011350 name: mylohyoid raphe synonym: "raphe of the mylohyoid" RELATED [] is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0011357 name: Reissner's fiber def: "An acellular strand that runs from subcommissural organ caudally through the ventricular system and central canal to the ampulla caudalis. Develops from glycoproteins secreted into CSF." [ISBN:0471888893, Wikipedia:Reissner's_fiber] synonym: "Reissner's fibre" EXACT [] xref: NLX:151878 xref: Wikipedia:Reissner's_fiber is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001017 ! central nervous system relationship: present_in_taxon NCBITaxon:7711 {source="ISBN:0471888893"} property_value: taxon_notes "Reissner's fiber is present in the central canal of species in all chordate subphyla[Olsson R. (1993) Reissner's fiber mechanisms: some common denominators. In The Subcommissural Organ: An Ependymal Brain Gland ]" xsd:string [Term] id: UBERON:0011358 name: infundibular organ comment: Resembles the subcommisural organ structurally, ultrastructurally and immunochemically[Niewenhuys] Gives rise to Reissner's fiber; however secretions are not identical to those of SCO [PMID:9550137][DOI:10.1007/BF00303086] synonym: "infundibular organ of Boeke" EXACT [] synonym: "ventral infundibular organ" EXACT [] is_a: UBERON:0000073 ! regional part of nervous system relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0001017 ! central nervous system relationship: present_in_taxon NCBITaxon:7737 {source="DOI:10.1111/j.1463-6395.1976", stage="larval"} [Term] id: UBERON:0011359 name: urophysis def: "This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]." [ISBN:0471888893] comment: Shares characteristics with neurohypophysis xref: BTO:0001848 is_a: UBERON:0002368 {source="BTO"} ! endocrine gland is_a: UBERON:0005174 ! dorsal region element relationship: never_in_taxon NCBITaxon:32523 {source="ISBN:0471888893"} relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord [Term] id: UBERON:0011360 name: ampulla caudalis def: "A ventricle-like space at the end of the central canal." [ISBN:0471888893] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal of spinal cord [Term] id: UBERON:0011362 name: cranial blood vasculature def: "A blood vasculature that is part of a head." [OBOL:automatic] synonym: "cranial blood vessel" EXACT [ZFA:0005297] synonym: "cranial blood vessels" RELATED OMO:0003004 [TAO:0005297] synonym: "set of blood vessels of head" EXACT [] xref: TAO:0005297 xref: ZFA:0005297 is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004537 ! blood vasculature property_value: external_definition "Blood vessel part of cranial vasculature.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005297", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0011363 name: cranial lymph vasculature def: "A lymph vasculature that is part of a head." [OBOL:automatic] synonym: "cranial lymph vessel" EXACT [ZFA:0005298] synonym: "cranial lymph vessels" RELATED OMO:0003004 [TAO:0005298] synonym: "cranial lymphatics" EXACT [UBERON:cjm] synonym: "set of cranial lymphatic vessels" RELATED [FMA:224562] synonym: "set of lymphatic vessels of head" EXACT [FMA:224562] xref: FMA:224562 xref: TAO:0005298 xref: ZFA:0005298 is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004536 ! lymph vasculature [Term] id: UBERON:0011364 name: cleidocephalicus muscle def: "The cleidomastoideus is a thick, strap-like muscle that together with the cleidocervicalis forms the proximal part of the brachiocephalicus. It lies beneath the cleidocervicalis. Its origin is the clavicular tendon with its insertion being at the mastoid process of the temporal bone. It is distinctly narrow and is united with the cleidocervicalis and cleidobrachialis by the clavicular tendon. Together with the other two components of the brachiocephalicus muscle, its primary function is to advance the free limb, however, it can also act as an shoulder extensor. Acting bilaterally, it fixes and depresses the neck, while by its unilateral action, it allows the head and neck to be drawn to the side. Its blood supply is the inferior cervical, carotid and vertebral arteries and its nerve supply is the spinal accessory, cervical and axillary nerves." [MURDOCH:379] comment: alt def: "Combination of cleidomastoid and cleidocervical muscles" synonym: "cleidocephalic" EXACT [MA:0002275] synonym: "cleidocephalic muscle" EXACT [] synonym: "cleidocephalicus" EXACT [] synonym: "cleidomastoid" RELATED [] synonym: "cleidomastoid muscle" RELATED [] synonym: "cleidomastoideus" RELATED [] synonym: "pars mastoideus" RELATED [] xref: EMAPA:37687 {source="MA:th"} xref: MA:0002275 xref: NCIT:C52893 xref: UMLS:C1707412 {source="ncithesaurus:Cleidocephalic"} is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:0011368 ! brachiocephalic muscle [Term] id: UBERON:0011366 name: cleidobrachialis muscle def: "This muscle makes up the distal segment of the brachiocephalicus. It originates at the clavicular tendon but functionally, from the head and neck through the cleidocervicalis. It inserts at the distal end of the cranial border of the humerus, where it lies between the biceps brachii medially and the brachialis laterally. The muscle partly covers the pectoral muscles at their insertions. In conjunction with the cleidocervicalis, it advances the limb, extends the shoulder and causes lateral movement of the head and neck." [MURDOCH:376] synonym: "cleidobrachial" EXACT [MA:0002274] synonym: "cleidobrachial muscle" EXACT [] synonym: "cleidobrachialis" EXACT [] xref: EMAPA:37686 {source="MA:th"} xref: MA:0002274 xref: NCIT:C52892 xref: UMLS:C1707411 {source="ncithesaurus:Cleidobrachial"} is_a: UBERON:0001482 ! muscle of shoulder relationship: part_of UBERON:0011364 ! cleidocephalicus muscle [Term] id: UBERON:0011368 name: brachiocephalic muscle def: "The brachiocephalicus is a long and flat, complex of muscles that extends from the lower half of the humeral shaft to the head and neck. The muscle divides into two parts at the clavicular intersection. This is also the point of origin for all the muscles that make up the brachiocephalicus. This point is situated just cranial to the shoulder. The two main sections are the cleidobrachialis which is distal to the clavicular intersection and the cleidocephalicus which extends proximally to the clavivular intersection. The cleidocephalicus can also be divided into the pars cervicalis, which inserts on the broad aponeurosis, over the fibrous raphe of the cranial half of the neck. The other part, the pars mastoideus inserts on the mastoid process of the temporal bone via a strong tendon. The cleidobrachialis extends distally from the clavicular intersection and inserts on the cranial edge of the distal half of the humerus. The tendon that inserts the cleidobrachialis lies between the brachialis muscle and the biceps brachii. As a result of the brachiocephalicus spanning a large region it has the ability to provide a number of actions. These include extending the shoulder joint, protracts the limb, provides lateral movement of the head and allows the neck to be depressed." [http://ccg.murdoch.edu.au/museum/] comment: The brachiocephalicus is more complex than other muscles of the forelimb. It consists of 2 elements that unite at the clavicle in dogs. In dogs the caudal part, known as the cleidobrachialis, runs from the clavicle to the humerus and is closely associated with the deltoid. The cranial portion runs from the clavicle to various attachments via a broad aponeurosis on the upper part of the head and neck. It is called the cleidomastoideus in the dog because it inserts on the mastoid process of the temporal bone. It may have a different name, like cleido-occipitalis, in other mammals. The name brachiocephalicus signifies that this complex of muscles runs from the upper arm to the head and does not specify the details of muscle attachments because these vary so much from species to species. The brachiocephalicus advances the limb and may also extend the shoulder joint, but this depends on the cranial attachment being fixed and the limb being free to move. However, when the forelimb is firmly on the ground and the head is free to move, it forces the head and neck either ventrally or to one side depending on whether or not both muscles act in tandem synonym: "brachiocephalicus" BROAD [] xref: EMAPA:37685 {source="MA:th"} is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0011369 name: omotransversarius muscle def: "The omotransversarius is a straplike muscle, which advances and adducts the forelimb, as well as flexes the neck laterally. It covers the transverse processes of the cervical vertebrae, lying to their side. The omotransversarius lies ventral to the trapezius, cranial to the deltoid muscle and is covered cranially by the cleidocervicalis. It extends from the atlas to the spine of the scapula, with its origin on the transverse process of the atlas and its insertion in the distal end of the spine of the scapula. Its name can be split into omo, which is Greek for shoulder, and tranversarius which relates to its attachment to the transverse process of the atlas. This muscle is innervated by the accessory nerve." [MURDOCH:1433] synonym: "omotransverse" EXACT [MA:0002349] synonym: "omotransverse muscle" EXACT [] xref: EMAPA:37690 {source="MA:th"} xref: MA:0002349 xref: NCIT:C52972 xref: UMLS:C1709311 {source="ncithesaurus:Omotransverse"} is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate [Term] id: UBERON:0011370 name: transverse process of atlas def: "A transverse process of vertebra that is part of a vertebral bone 1." [OBOL:automatic] xref: FMA:23981 xref: SCTID:181895009 xref: Wikipedia:Transverse_processes is_a: UBERON:0001077 ! transverse process of vertebra is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001092 ! vertebral bone 1 [Term] id: UBERON:0011371 name: sternocephalicus muscle def: "The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle." [MURDOCH:1749] synonym: "sternocephalicus" EXACT [] xref: NCIT:C117980 xref: SCTID:21636001 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate [Term] id: UBERON:0011374 name: prepuce def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis or clitoris. Glands may also be present." [http://orcid.org/0000-0002-6601-2165] xref: NCIT:C12323 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0003133 ! reproductive organ relationship: transformation_of UBERON:0035004 ! preputial swelling property_value: curator_notes "this is a generic sex-neutral grouping class for the male and female prepuce. Note that this structure is a combination of skin and other tissue" xsd:string property_value: has_relational_adjective "preputial" xsd:string [Term] id: UBERON:0011375 name: skin of prepuce of clitoris def: "A zone of skin that is part of a prepuce of clitoris." [OBOL:automatic] synonym: "preputial skin of clitoris" EXACT [FMA:27886] xref: FMA:27886 xref: SCTID:367670008 is_a: UBERON:0005298 ! skin of clitoris relationship: part_of UBERON:0005298 ! skin of clitoris relationship: part_of UBERON:0005299 ! prepuce of clitoris [Term] id: UBERON:0011376 name: iliothoracic muscle def: "The iliothoracic group is made up of the abdominal wall muscles: rectus abdominis, external abdominal oblique, internal abdominal obliquus, and the transversus abdominis." [http://emedicine.medscape.com/article/1899031-overview] synonym: "iliothoracic" EXACT [MA:0002322] xref: EMAPA:37605 {source="MA:th"} xref: MA:0002322 xref: NCIT:C52944 xref: UMLS:C1708463 {source="ncithesaurus:Iliothoracic"} is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005173 ! abdominal segment element is_a: UBERON:0005174 ! dorsal region element relationship: part_of UBERON:0005462 ! lower back [Term] id: UBERON:0011377 name: femorothoracic muscle def: "The femorospinal group is made up of the psoas major and iliacus muscles." [http://emedicine.medscape.com/article/1899031-overview] synonym: "femorothoracic" EXACT [MA:0002322] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005173 ! abdominal segment element is_a: UBERON:0005174 ! dorsal region element relationship: part_of UBERON:0005462 ! lower back [Term] id: UBERON:0011379 name: male external urethral sphincter def: "The external sphincter muscle of urethra (or sphincter urethrae membranaceae) surrounds the whole length of the membranous portion of the urethra, and is enclosed in the fasciæ of the urogenital diaphragm. They arch across the front of the urethra and bulbourethral glands, pass around the urethra, and behind it unite with the muscle of the opposite side, by means of a tendinous raphé." [Wikipedia:External_sphincter_muscle_of_male_urethra] synonym: "bulboglandular" RELATED [MA:0002273] synonym: "bulboglandular muscle" RELATED [] synonym: "external urethral sphincter of male urethra" EXACT [FMA:19733] synonym: "male sphincter urethrae" EXACT [FMA:19733] synonym: "male sphincter urethrae muscle" EXACT [FMA:19733] synonym: "male urethral sphincter muscle" EXACT [FMA:19733] synonym: "musculus sphincter urethrae externus (urethra masculina)" EXACT OMO:0003011 [FMA:19733, FMA:TA] synonym: "musculus sphincter urethrae externus urethrae masculinae" EXACT OMO:0003011 [Wikipedia:External_sphincter_muscle_of_male_urethra] synonym: "musculus sphincter urethrae membranaceae" EXACT OMO:0003011 [Wikipedia:External_sphincter_muscle_of_male_urethra] xref: FMA:19733 xref: MA:0002273 xref: NCIT:C52891 xref: UMLS:C1707060 {source="ncithesaurus:Bulboglandular"} xref: Wikipedia:External_sphincter_muscle_of_male_urethra is_a: UBERON:0004919 ! external urethral sphincter is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000079 ! male reproductive system property_value: external_ontology_notes "MA includes a term bulboglandular - some sources claim this as the muscles that are associated with the bulbourethral gland, so we place this here" xsd:string {external_ontology="MA"} [Term] id: UBERON:0011380 name: female external urethral sphincter def: "The external sphincter muscle of female urethra is a muscle which controls urination." [Wikipedia:External_sphincter_muscle_of_female_urethra] synonym: "compressor urethrae" RELATED INCONSISTENT [Wikipedia:External_sphincter_muscle_of_female_urethra] synonym: "external urethral sphincter of female urethra" EXACT [] synonym: "musculus sphincter urethrae externus (urethra feminina)" EXACT OMO:0003011 [FMA:19778, FMA:TA] synonym: "musculus sphincter urethrae externus urethrae femininae" EXACT OMO:0003011 [Wikipedia:External_sphincter_muscle_of_female_urethra] synonym: "outer muscle layer of female urethra" EXACT [FMA:19778] synonym: "rhabdosphincter of female urethra" EXACT [FMA:19778] synonym: "sphincter urethrovaginalis" RELATED DEPRECATED [Wikipedia:External_sphincter_muscle_of_female_urethra] synonym: "striated muscle layer of female urethra" EXACT [FMA:19778] synonym: "urethrovaginal sphincter" RELATED DEPRECATED [Wikipedia:External_sphincter_muscle_of_female_urethra] xref: FMA:19778 xref: Wikipedia:External_sphincter_muscle_of_female_urethra is_a: UBERON:0004919 ! external urethral sphincter is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0011383 name: inferior pancreaticoduodenal vein def: "A blood vessel running parallel to the inferior pancreatico-duodenal artery that drains blood from the pancreas and duodenum into the splenic vein." [ncithesaurus:Inferior_Pancreatico-Duodenal_Vein] synonym: "inferior pancreatico-duodenal vein" EXACT [MA:0002191] xref: EMAPA:37616 {source="MA:th"} xref: MA:0002191 xref: NCIT:C52692 xref: UMLS:C1711328 {source="ncithesaurus:Inferior_Pancreatico-Duodenal_Vein"} is_a: UBERON:0004690 ! pancreaticoduodenal vein [Term] id: UBERON:0011384 name: superior pancreaticoduodenal vein synonym: "superior pancreatico-duodenal vein" EXACT [MA:0002192] synonym: "vena pancreaticoduodenalis superior" EXACT [] xref: EMAPA:37194 {source="MA:th"} xref: MA:0002192 is_a: UBERON:0004690 ! pancreaticoduodenal vein [Term] id: UBERON:0011385 name: parotidoauricular muscle def: "Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species." [MURDOCH:1519] synonym: "parotidoauricular" EXACT [MA:0002352] synonym: "parotidoauricularis" EXACT [] xref: EMAPA:37692 {source="MA:th"} xref: MA:0002352 xref: NCIT:C52976 xref: UMLS:C1709470 {source="ncithesaurus:Parotidoauricular"} is_a: UBERON:0001583 ! extrinsic auricular muscle [Term] id: UBERON:0011386 name: facial modiolus def: "A chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris." [Wikipedia:Modiolus_(face)] synonym: "modiolus" BROAD [MFMO:0000057] synonym: "modiolus anguli oris" EXACT OMO:0003011 [FMA:46837, FMA:TA] xref: FMA:46837 xref: MFMO:0000057 xref: Wikipedia:Modiolus_(face) is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0001567 {source="FMA"} ! cheek property_value: seeAlso "https://github.com/obophenotype/uberon/issues/471" xsd:anyURI [Term] id: UBERON:0011387 name: constrictor vulvae muscle synonym: "constrictor vulvae" EXACT [MA:0002281] synonym: "sphincter vaginae" RELATED [Wikipedia:Bulbospongiosus_muscle] xref: EMAPA:37483 {source="MA:th"} xref: MA:0002281 xref: NCIT:C52898 xref: SCTID:244961006 xref: UMLS:C1707495 {source="ncithesaurus:Constrictor_Vulvae"} is_a: UBERON:0011389 {notes="unvetted"} ! bulbospongiosus muscle property_value: external_definition "The constrictor muscle of the labia is weakly developed in the female dog which blends dorsally with the external anal sphincter muscle and attaches to the coccygeal fascia at the level of the first and second coccygeal vertebrae. It encircles the vulva and vestibule for a distance of about 1 cm. caudal to the area where the urethra enters the vestibule. Its action is to lift the labia dorsally to facilitate intromission of the penis into the vagina. The constrictor vestibuli and vulvae are homologous to the bulbospogiosus (bulbocavernosus) muscle in the male." xsd:string {source="http://compepid.tuskegee.edu/syllabi/biomedical/Anatomy/grossanat301/chapter11.html"} [Term] id: UBERON:0011388 name: male bulbospongiosus muscle def: "A bulbospongiosus muscle that is part of a male reproductive system." [OBOL:automatic] synonym: "bulbospongiosus of male" EXACT [] synonym: "male bulbospongiosus" EXACT [] xref: SCTID:244973006 is_a: UBERON:0003135 ! male reproductive organ is_a: UBERON:0011389 ! bulbospongiosus muscle property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Bulbospongiosus-Male.png" xsd:anyURI [Term] id: UBERON:0011389 name: bulbospongiosus muscle def: "The bulbospongiosus is the thick extrapelvic continuation of the urethralis. It originates from the perineal body (and midline raphe over corpus spongiosum in male) and inserts at the superficial perineal membrane and dorsal penile or clitoral aponeurosis. In males, the bulbospongiosus muscles are united and surround the base of the penis. They aid in emptying of urine and ejaculate from urethra. In females, these muscles are separated in the middle by the vagina and act to constrict the vaginal introitus. They can also stop the flow of blood into veins, which maintains an erection in the penis of the male and the clitoris of the female. Its nerve connection is the perineal branch of the pudendal nerve (S2, 3, 4)." [MURDOCH:245, Wikipedia:Bulbospongiosus_muscle] subset: human_reference_atlas synonym: "bulbocavernosus" RELATED [Wikipedia:Bulbospongiosus_muscle] synonym: "bulbocavernosus muscle" RELATED [Wikipedia:Bulbospongiosus_muscle] synonym: "bulbocavernous" RELATED [Wikipedia:Bulbospongiosus_muscle] synonym: "bulbospongiosus" EXACT [FMA:19729] synonym: "bulbospongiosus" RELATED [Wikipedia:Bulbospongiosus_muscle] synonym: "musculus bulbospongiosus" EXACT OMO:0003011 [Wikipedia:Bulbospongiosus_muscle] xref: EMAPA:37454 {source="MA:th"} xref: FMA:19729 xref: MA:0003116 xref: NCIT:C112234 xref: SCTID:244972001 xref: Wikipedia:Bulbospongiosus_muscle is_a: UBERON:0002379 ! perineal muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011390 name: pudendal nerve def: "The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord." [Wikipedia:Pudendal_nerve] subset: human_reference_atlas synonym: "internal pudendal nerve" RELATED [Wikipedia:Pudendal_nerve] synonym: "nervus pudendae" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "nervus pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "pudenal nerve" RELATED [Wikipedia:Pudendal_nerve] synonym: "pudendal" BROAD [Wikipedia:Pudendal_nerve] xref: FMA:19037 xref: MESH:D060525 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:181057000 xref: Wikipedia:Pudendal_nerve is_a: UBERON:0003444 ! pelvis nerve relationship: part_of UBERON:0000012 ! somatic nervous system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011391 name: perineal nerve def: "A nerve arising from the pudendal nerve that supplies the perineum." [Wikipedia:Perineal_nerve] synonym: "perineal branch of pudendal nerve" EXACT [FMA:21866] xref: FMA:21866 xref: SCTID:303236009 xref: Wikipedia:Perineal_nerve is_a: UBERON:0003444 ! pelvis nerve [Term] id: UBERON:0011392 name: blood vessel internal elastic membrane def: "A layer of elastic tissue that forms the outermost part of the tunica intima of blood vessels." [Wikipedia:Internal_elastic_lamina] synonym: "inner elastic lamina" EXACT [FMA:68205] synonym: "internal elastic lamina" EXACT [FMA:68205] synonym: "internal elastic membrane" EXACT [MA:0002863] xref: EMAPA:36301 xref: FMA:68205 xref: MA:0002863 xref: NCIT:C32842 xref: SCTID:86405007 xref: UMLS:C1512870 {source="ncithesaurus:Internal_Elastic_Membrane"} xref: Wikipedia:Internal_elastic_lamina is_a: UBERON:0003614 {source="MA"} ! blood vessel elastic tissue relationship: part_of UBERON:0002523 {source="MA"} ! tunica intima property_value: external_definition "A stretchable connective tissue membrane that is the outermost component of the tunica intima, delineating the border between the tunica media and the tunica intima." xsd:string {source="ncithesaurus:Internal_Elastic_Membrane"} property_value: external_ontology_notes "in FMA this is classified as an acellular membrane, which is inconsistent with our classification as a tissue layer. Requires further investigation" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011415 name: cutaneous trunci muscle def: "Lying just below the skin, cutaneus trunci is one of very few cutaneus muscles. It composes of a thin sheets of muscle that spred over the body in the superficial fasciae. Their role is to twich the skin to rid of pests etc. Cuteneus muscles are found in all domestic species." [MURDOCH:2210] comment: covers the entire body with a thin layer of muscle under the deepest layer of the skin. When an area of neuronal subluxation is stimulated with the activator, the cutaneous trunci muscle contracts and causes an involuntary reflexive spasm or "twitch" of the skin synonym: "cutaneous trunci" EXACT [MA:0002285] xref: EMAPA:37501 {source="MA:th"} xref: MA:0002285 xref: NCIT:C52901 is_a: UBERON:0006821 ! cutaneous muscle [Term] id: UBERON:0011464 name: levator nasolabialis muscle def: "Is a principal muscle of the lips which arises over the dorsum of the nose. It runs cranioventrally to insert partly on the wing of the nostril and partly into the lateral part of the upper lip. This muscles function includes dilation of the nostril, elevation and retraction of the upper lip. Branches of the facial nerve supply innervation to this muscle." [MURDOCH:1180] synonym: "levator nasolabialis" EXACT [MA:0002334] xref: EMAPA:37502 {source="MA:th"} xref: MA:0002334 xref: NCIT:C52950 xref: UMLS:C1708693 {source="ncithesaurus:Levator_Nasolabialis"} is_a: UBERON:0006821 ! cutaneous muscle [Term] id: UBERON:0011465 name: longissimus atlantis muscle def: "A muscle that runs beneath the longissimus capitis and inserts on the wing of the atlas." [Wikipedia:Musculus_longissimus] synonym: "longissimus atlantis" EXACT [MA:0002335] xref: EMAPA:37649 {source="MA:th"} xref: MA:0002335 is_a: UBERON:0000392 ! longissimus muscle relationship: present_in_taxon NCBITaxon:9611 relationship: present_in_taxon NCBITaxon:9788 property_value: taxon_notes "present in horses and dogs" xsd:string [Term] id: UBERON:0011472 name: ventral lateral sacrocaudal muscle def: "The ventral lateral sacrocaudal is a long strong muscle consisting of numerous individual parts. Its first segment originates from the last lumbar vertebrae and the remainder from the transverse processes of the caudal vertebrae. From the segmented bellies arise long tendons which are embedded in caudal fascia. The first of these tendons inserts onto the sixth caudal vertebrae, the second onto the seventh and so on until the last caudal vertebrae. The ventral lateral sacrocaudal acts to flex the tail and occasionally assists with lateral movement." [MURDOCH:2183] synonym: "lumbosacrocaudalis" EXACT [MA:0002342] synonym: "lumbosacrocaudalis muscle" EXACT [MA:0002342] synonym: "ventral lateral sacrocaudal" EXACT [MURDOCH:2183] xref: EMAPA:37658 {source="MA:th"} xref: MA:0002342 xref: MURDOCH:2183 is_a: UBERON:0001630 {source="MA"} ! muscle organ [Term] id: UBERON:0011495 name: rectus thoracis muscle def: "Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration." [MURDOCH:2224] synonym: "rectus thoracis" EXACT [MA:0002366] xref: EMAPA:37709 {source="MA:th"} xref: MA:0002366 is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0014398 ! respiratory muscle [Term] id: UBERON:0011508 name: sphincter colli superficialis muscle def: "The sphincter colli superficialis is composed of transverse muscle fibers, and covers the entire area between the lower jaw and chest. The muscle is used to tighten the skin on the underside of the throat." [Wikipedia:Platysma] synonym: "M. sphincter colli superficialis" EXACT [] synonym: "sphincter colli superficialis" EXACT [MA:0002380] xref: EMAPA:37699 {source="MA:th"} xref: MA:0002380 xref: NCIT:C53016 is_a: UBERON:0002377 ! muscle of neck relationship: dubious_for_taxon NCBITaxon:9989 {reference="Ryan 1989", source="Morphobank"} relationship: part_of UBERON:0013635 ! sphincter colli muscle relationship: present_in_taxon NCBITaxon:9975 {reference="Ryan 1989", source="Morphobank"} property_value: taxon_notes "M. sphincter colli superficialis is present in Lagomorpha but absent in Rodentia (Meinertz, 1941, 1942; Ryan, 1989; Rinker, 1954). Some errouneous references of this muscle in rodents (e.g., Bezuidenhout and Evans, 2005) are due to decussating fibers of the deep sphincter, which creates a false superficial sphincter (Ryan, 1989)" xsd:string [Term] id: UBERON:0011509 name: sphincter colli profundus muscle def: "The sphincter colli profundus lies below the platysma in the area of the parotid gland (gland regions)." [Wikipedia:Platysma] comment: The muscles of the mid and upper face derive from the embryonic sphincter colli profundus muscle synonym: "M. sphincter colli profundus" EXACT [] synonym: "sphincter colli profundus" EXACT [] is_a: UBERON:0002377 ! muscle of neck relationship: part_of UBERON:0013635 ! sphincter colli muscle [Term] id: UBERON:0011510 name: cloacal bursa def: "An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration." [PMID:11479904, UBERON:cjm] comment: Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904] is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0000162 ! cloaca property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d8/Turtle_Cloacal_Respiration.png" xsd:anyURI [Term] id: UBERON:0011511 name: iliococcygeus muscle def: "The Iliococcygeus arises from the ischial spine and from the posterior part of the tendinous arch of the obturator fascia, and is attached to the coccyx and anococcygeal raphC); it is usually thin, and may fail entirely, or be largely replaced by fibrous tissue. It is part of the levator ani group of muscles. An accessory slip at its posterior part is sometimes named the Iliosacralis." [Wikipedia:Iliococcygeus_muscle] subset: human_reference_atlas synonym: "iliococcygeal" RELATED [Wikipedia:Iliococcygeus_muscle] synonym: "iliococcygei" RELATED [Wikipedia:Iliococcygeus_muscle] synonym: "iliococcygeus" EXACT [FMA:19092] synonym: "iliococcygeus" RELATED [Wikipedia:Iliococcygeus_muscle] synonym: "levator ani - iliococcygeus" RELATED [Wikipedia:Iliococcygeus_muscle] synonym: "levator ani-iliococcygeus" RELATED [Wikipedia:Iliococcygeus_muscle] synonym: "musculus iliococcygeus" EXACT OMO:0003011 [Wikipedia:Iliococcygeus_muscle] xref: FMA:19092 xref: SCTID:244964003 xref: Wikipedia:Iliococcygeus_muscle is_a: UBERON:0001325 ! muscle of pelvis relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011512 name: puborectalis muscle def: "The fibers which form a sling for the rectum are named the Puborectalis or Sphincter recti. They arise from the lower part of the symphysis pubis, and from the superior fascia of the urogenital diaphragm. They meet with the corresponding fibers of the opposite side around the lower part of the rectum, and form for it a strong sling. Relaxation reduces the angle between rectum and anus, allowing defecation in conjunction with relaxation of the internal and external sphincters. Puborectalis is part of the levator ani group of muscles." [Wikipedia:Puborectalis_muscle] subset: human_reference_atlas synonym: "puborectalis" EXACT [FMA:19091] synonym: "puborectalis" RELATED [Wikipedia:Puborectalis_muscle] synonym: "sphincter recti" RELATED [Wikipedia:Puborectalis_muscle] xref: FMA:19091 xref: SCTID:244962004 xref: Wikipedia:Puborectalis_muscle is_a: UBERON:0001325 ! muscle of pelvis relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011528 name: pubococcygeus muscle def: "The pubococcygeus muscle or PC muscle is a hammock-like muscle, found in both sexes, that stretches from the pubic bone to the coccyx (tail bone) forming the floor of the pelvic cavity and supporting the pelvic organs. It is part of the levator ani group of muscles." [Wikipedia:Pubococcygeus_muscle] subset: human_reference_atlas synonym: "coccygeus muscle" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "kegel muscle" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "levator ani-pubococcygeus" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "levator ani-puborectalis" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "levator prostatae" EXACT [FMA:19090] synonym: "musculus pubococcygeus" EXACT OMO:0003011 [Wikipedia:Pubococcygeus_muscle] synonym: "musculus pubovaginalis" EXACT OMO:0003011 [FMA:TA] synonym: "pc muscle" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "pubococcygeal" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "pubococcygeal muscles" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "pubococcygeus" RELATED [Wikipedia:Pubococcygeus_muscle] xref: FMA:19090 xref: SCTID:244958005 xref: Wikipedia:Pubococcygeus_muscle is_a: UBERON:0001325 ! muscle of pelvis relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011531 name: male pubococcygeus muscle def: "A pubococcygeus muscle that is part of a male organism." [OBOL:automatic] synonym: "levator prostate" EXACT [] synonym: "levator prostate muscle" EXACT [] synonym: "musculus levator prostatae" EXACT OMO:0003011 [] xref: SCTID:71507008 is_a: UBERON:0011528 ! pubococcygeus muscle relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0011532 name: female pubococcygeus muscle def: "Pubovaginalis in the female is the equivalent of levator prostatae in the male." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "pubovaginalis" EXACT [FMA:19090] synonym: "pubovaginalis muscle" EXACT [] xref: SCTID:208282000 is_a: UBERON:0011528 ! pubococcygeus muscle relationship: part_of UBERON:0003100 ! female organism relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011533 name: abductor pollicis, radioulna-prepollox def: "Originates on the distal radioulna and inserts on the palmar prepollex." [AAO:0010805] synonym: "m. abductor pollicis" RELATED [AAO:0010805] xref: AAO:0010805 is_a: UBERON:0003662 ! forelimb muscle [Term] id: UBERON:0011534 name: abductor pollicis muscle xref: SCTID:368422008 is_a: UBERON:0003662 ! forelimb muscle is_a: UBERON:0006845 ! abductor muscle [Term] id: UBERON:0011535 name: chondroglossus muscle def: "The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus." [Wikipedia:Chondroglossus] synonym: "chondroglossal" EXACT [FMA:46700] synonym: "chondroglossal muscle" RELATED [Wikipedia:Chondroglossus] synonym: "chondroglossus" EXACT [FMA:46700] synonym: "musculus chondroglossus" RELATED OMO:0003011 [_muscle] xref: FMA:46700 xref: SCTID:244787000 xref: Wikipedia:Chondroglossus is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus muscle [Term] id: UBERON:0011564 name: adductor pollicis muscle of prepollex def: "Originates from the distal carpal 5-4-3 and inserts on the palmar prepollex." [AAO:0010811] synonym: "m. adductor pollicis" RELATED [AAO:0010811] xref: AAO:0010811 is_a: UBERON:0011145 ! adductor muscle [Term] id: UBERON:0011565 name: lumen of gastrointestinal system synonym: "cavity of digestive tract" EXACT [] synonym: "cavity of gastrointestinal tract" EXACT [] synonym: "gastrointestinal tract lumen" EXACT [FMA:54364] synonym: "lumen of gastrointestinal tract" EXACT [FMA:54364] xref: FMA:54364 xref: SCTID:432899004 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0011566 name: lumen of esophagus def: "An anatomical cavity that is part of a esophagus." [OBOL:automatic] subset: pheno_slim synonym: "cavity of eosophagus" EXACT [] synonym: "cavity of esophagus" EXACT [FMA:9398] synonym: "eosophageal cavity" EXACT [] synonym: "eosophageal lumen" EXACT [] synonym: "eosophagus lumen" EXACT [] synonym: "esophageal cavity" EXACT [FMA:9398] synonym: "esophageal lumen" EXACT [FMA:9398] synonym: "esophagus lumen" EXACT [FMA:9398] xref: EMAPA:18380 xref: FMA:9398 xref: SCTID:322648002 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0011565 {source="FMA"} ! lumen of gastrointestinal system [Term] id: UBERON:0011574 name: mesonephric duct lumen def: "A tube lumen that is part of a mesonephric duct." [OBOL:automatic] synonym: "cavity of nephric duct" RELATED [] synonym: "nephric duct lumen" EXACT [EHDAA2:0001244] xref: EHDAA2:0001244 is_a: UBERON:0005082 ! tube lumen [Term] id: UBERON:0011575 name: styloid process of ulna def: "The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]." [Wikipedia:Ulnar_styloid_process] subset: human_reference_atlas subset: pheno_slim synonym: "processus styloideus ulnae" EXACT OMO:0003011 [FMA:TA, Wikipedia:Ulnar_styloid_process] synonym: "ulnar styloid process" EXACT [FMA:23628] xref: FMA:23628 xref: SCTID:181952009 xref: Wikipedia:Ulnar_styloid_process is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004408 {source="FMA"} ! distal epiphysis of ulna relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011576 name: supraorbital ridge def: "The superior half of the orbital rim, which constitutes the curved superior border of the orbital opening, formed by the frontal bone." [http://www.medilexicon.com/medicaldictionary.php?t=52809] subset: pheno_slim synonym: "arcus superciliaris" RELATED OMO:0003011 [Wikipedia:Supraorbital_ridge] synonym: "eyebrow bone" RELATED [Wikipedia:Supraorbital_ridge] synonym: "frontal torus" NARROW SENSU [Wikipedia:Supraorbital_ridge] synonym: "frontal torus" RELATED [Wikipedia:Supraorbital_ridge] synonym: "margin of the orbit" RELATED [Wikipedia:Supraorbital_ridge] synonym: "margo supraorbitalis" EXACT OMO:0003011 [FMA:53097, FMA:TA] synonym: "margo supraorbitalis (os frontale)" RELATED [FMA:53097] synonym: "orbital ridge" RELATED [] synonym: "superciliary ridge" RELATED [Wikipedia:Supraorbital_ridge] synonym: "superior orbital rim" EXACT [] synonym: "supra-orbital border of frontal bone" RELATED [FMA:53097] synonym: "supra-orbital margin" EXACT [FMA:317104] synonym: "supra-orbital margin of frontal bone" RELATED [FMA:53097] synonym: "supra-orbital ridge" EXACT [] synonym: "supraorbital arch" RELATED [Wikipedia:Supraorbital_ridge] synonym: "supraorbital margin" EXACT [] synonym: "supraorbital margin" RELATED [Wikipedia:Supraorbital_ridge] synonym: "supraorbital margin of frontal bone" RELATED [FMA:53097] synonym: "supraorbital surface of frontal bone" RELATED [FMA:57137] synonym: "supraorbital torus" NARROW SENSU [NCBITaxon:63221, Wikipedia:Supraorbital_ridge] synonym: "supraorbital torus" RELATED [Wikipedia:Supraorbital_ridge] xref: FMA:317104 xref: NCIT:C82953 xref: SCTID:280550003 xref: UMLS:C2826587 {source="ncithesaurus:Orbital_Ridge"} xref: Wikipedia:Supraorbital_ridge is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: part_of UBERON:0035849 ! orbital margin relationship: present_in_taxon NCBITaxon:63221 relationship: seeAlso FMA:53097 relationship: seeAlso FMA:57137 property_value: external_ontology_notes "see also: 'supraorbital flange'. FMA has 2 related classes, but these refer to the line and surface" xsd:string {external_ontology="FMA"} property_value: taxon_notes "Neanderthals have a Supraorbital torus, a prominent, trabecular (spongy) brow ridge." xsd:string {source="Wikipedia:Neanderthal_anatomy", taxon="NCBITaxon:63221"} [Term] id: UBERON:0011577 name: flexural organ def: "A portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin." [https://sourceforge.net/tracker/?group_id=76834&atid=994726, ZFA:0007071] xref: ZFA:0007071 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002328 {source="ZFA"} ! notochord relationship: present_in_taxon NCBITaxon:7711 property_value: editor_note "we cannot classify as a secretory circumventricular organ, as this leads to unsatisfiability" xsd:string property_value: taxon_notes "may be an ontogenetical remnant of the infundibular organ in cephalochordates" xsd:string [Term] id: UBERON:0011579 name: venom gland def: "A gland that secretes venom." [https://orcid.org/0000-0002-6601-2165] subset: functional_classification xref: SCTID:362181001 is_a: UBERON:0002365 ! exocrine gland property_value: curator_notes "we include a separate class for snake venom glands" xsd:string [Term] id: UBERON:0011580 name: platypus crural gland def: "A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind limb." [Wikipedia:Platypus_venom#Spur_and_crural_gland] xref: Wikipedia:Platypus_venom#Spur_and_crural_gland is_a: UBERON:0011579 ! venom gland relationship: part_of UBERON:0011581 ! platypus calcaneus spur [Term] id: UBERON:0011581 name: platypus calcaneus spur synonym: "ankle spur" RELATED [] synonym: "calcaneus spur" RELATED [] synonym: "hind-leg spur" RELATED [] synonym: "poisonous ankle spur" RELATED [] is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0002387 ! pes relationship: present_in_taxon NCBITaxon:9257 property_value: taxon_notes "The female platypus, in common with echidnas, has rudimentary spur buds which do not develop (dropping off before the end of their first year) and lack functional crural glands. Not to be confused with 'calcaneal spur', a small osteophyte (bone spur) located on the calcaneus (heel bone)" xsd:string [Term] id: UBERON:0011582 name: paired limb/fin skeleton def: "The collection of all skeletal elements in an individual limb or fin." [https://orcid.org/0000-0002-6601-2165] subset: homology_grouping synonym: "limb/fin skeleton" EXACT [VSAO:0000301] synonym: "skeletal parts of limb/fin" EXACT [] synonym: "skeleton of limb/fin" EXACT [] xref: VSAO:0000301 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010912 ! subdivision of skeleton relationship: develops_from UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0004708 ! paired limb/fin property_value: external_definition "Skeletal subdivision that is part of the paired limb/fin.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000301", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070"} [Term] id: UBERON:0011583 name: stylopodial skeleton def: "Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]." [VSAO:0005007] synonym: "mesomere 1" RELATED HOMOLOGY [ISBN:0226313409] synonym: "propodial skeleton" RELATED [] synonym: "propodium" RELATED [VSAO:0005007] synonym: "proximal metapterygial mesomere" RELATED HOMOLOGY [ISBN:0226313409] synonym: "stylopod" RELATED [VSAO:0005007] synonym: "stylopodium" RELATED [] synonym: "stylopodium skeleton" EXACT [] xref: VSAO:0005007 is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0002472 ! stylopod relationship: part_of UBERON:0004381 {source="VSAO"} ! skeleton of limb property_value: external_definition "Proximal element of the limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0005007", ontology="VSAO", source="VSAO:NI"} property_value: has_relational_adjective "propodial" xsd:string property_value: has_relational_adjective "stylopodial" xsd:string [Term] id: UBERON:0011584 name: zeugopodial skeleton def: "Section of the forelimb skeleton located between the stylopodium and the autopodium." [VSAO:0005010] synonym: "epipodial skeleton" EXACT [] synonym: "epipodium" RELATED [VSAO:0005010] synonym: "mesomere 2" RELATED HOMOLOGY [ISBN:0226313409] synonym: "mesomere 2 skeleton" RELATED HOMOLOGY [ISBN:0226313409] synonym: "skeleton of zeugopod" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "zeugopod skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "zygopodium" RELATED [VSAO:0005010] xref: VSAO:0005010 is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0002471 ! zeugopod relationship: part_of UBERON:0004381 {source="VSAO"} ! skeleton of limb property_value: has_relational_adjective "zeugopodial" xsd:string property_value: has_relational_adjective "zygopodial" xsd:string [Term] id: UBERON:0011585 name: cell condensation def: "Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995)." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000006] xref: VSAO:0000006 xref: XAO:0004021 is_a: UBERON:0000061 {source="VSAO"} ! anatomical structure property_value: editor_note "consider obsoleting, coordinate with VSAO" xsd:string [Term] id: UBERON:0011586 name: obsolete proteinaceous extracellular matrix comment: obsoleted as it was already present in GO is_obsolete: true consider: GO:0005578 consider: VSAO:0000021 [Term] id: UBERON:0011587 name: pre-dentine def: "Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000071] synonym: "pre-dentine tissue" EXACT [VSAO:curator] synonym: "predentin" EXACT [PMCID:PMC3360947] synonym: "predentine tissue" EXACT [VSAO:curator] xref: EMAPA:36439 xref: VSAO:0000071 xref: XAO:0004052 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue [Term] id: UBERON:0011588 name: pre-enamel def: "Odontogenic tissue that is avascular non-mineralized matrix that is deposited by preameloblast and ameloblasts that are excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000066] synonym: "pre-enamel tissue" EXACT [VSAO:curator] synonym: "preenamel tissue" EXACT [VSAO:curator] xref: VSAO:0000066 xref: XAO:0004202 is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue [Term] id: UBERON:0011589 name: non-mineralized cartilage tissue def: "Cartilage tissue that is not mineralized." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000089] xref: VSAO:0000089 xref: XAO:0004044 is_a: UBERON:0002418 {source="VSAO"} ! cartilage tissue property_value: editor_note "add developmental relationships; add disjointness axiom" xsd:string [Term] id: UBERON:0011590 name: commissure of diencephalon def: "A commissure that is part of a diencephalon." [OBOL:automatic] synonym: "diencephalon commissure" EXACT [FMA:62445] xref: FMA:62445 is_a: UBERON:0005970 ! brain commissure is_a: UBERON:0011591 ! tract of diencephalon [Term] id: UBERON:0011591 name: tract of diencephalon def: "An axon tract that is part of a diencephalon." [OBOL:automatic] synonym: "diencephalon tract" EXACT [FMA:62447] xref: FMA:62447 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0011592 name: future upper lip synonym: "upper jaw future lip" EXACT [EHDAA2:0002120] xref: EHDAA2:0002120 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003235 ! epithelium of upper jaw relationship: develops_from UBERON:0004068 {notes="fusion"} ! medial nasal prominence relationship: develops_from UBERON:0005868 {notes="fusion"} ! maxillary prominence [Term] id: UBERON:0011593 name: maxillary tooth def: "A tooth that is attached to a maxilla[TAO,modified]." [TAO:0001627] synonym: "maxillary teeth" EXACT OMO:0003004 [AAO:0000287] xref: AAO:0000287 xref: FMA:321646 xref: TAO:0001627 xref: Wikipedia:Tooth_(human) is_a: UBERON:0003267 ! tooth of upper jaw property_value: curator_notes "this ontology also contains a class for 'tooth of upper jaw'. This is not equivalent to 'maxillary tooth' in a multi-species context, because many vertebrates have other tooth-bearing bones in the upper jaw[http://orcid.org/0000-0002-6601-2165]" xsd:string property_value: external_definition "Tooth that is attached to the maxilla.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001627", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0011594 name: dentary tooth def: "Tooth that is attached to a dentary/mandible[TAO,modified]." [TAO:0001628] synonym: "mandibular teeth" RELATED OMO:0003004 [AAO:0000641] synonym: "mandibular tooth" RELATED [] synonym: "tooth of dentary" RELATED [] xref: AAO:0000125 xref: AAO:0000641 xref: SCTID:245547003 xref: TAO:0001628 is_a: UBERON:0003268 ! tooth of lower jaw property_value: axiom_lost_from_external_ontology "relationship loss: part_of dentary tooth row (TAO:0001952)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001628", ontology="TAO"} property_value: editor_note "Note that we treat dentary tooth and mandibular tooth as equivalent" xsd:string property_value: external_definition "Tooth that is attached to the dentary.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001628", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0011595 name: jaw region def: "A subdivision of the head that corresponds to the jaw skeleton, containing both soft tissue, skeleton and teeth (when present). The jaw region is divided into upper and lower regions." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:32905 xref: NCIT:C114916 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000165 {source="EMAPA", source="FMA-abduced", source="ZFA-abduced"} ! mouth property_value: seeAlso "http://eol.org/collections/11578" xsd:anyURI [Term] id: UBERON:0011596 name: future lower lip synonym: "lower jaw future lip" EXACT [EHDAA2:0001020] xref: EHDAA2:0001020 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003236 ! epithelium of lower jaw relationship: develops_from UBERON:0005867 {source="Wikipedia:Mandibular_prominence"} ! mandibular prominence [Term] id: UBERON:0011597 name: bone of upper jaw def: "Any bone that is part of the upper jaw skeleton. This includes (when present): the maxilla, the quadrate (in some species)." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "upper jaw bone" EXACT [] is_a: UBERON:0012360 ! bone of jaw relationship: part_of UBERON:0003277 ! skeleton of upper jaw property_value: editor_note "Do not manually classify under here - bones are automatically classified" xsd:string [Term] id: UBERON:0011598 name: coronoid bone synonym: "coronoid process" BROAD [TAO:0001673] xref: AAO:0000103 xref: TAO:0001673 is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 {source="AAO"} ! dermal bone relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011599 name: lenticular process of incus bone def: "The long ventral process of the incus bone which articulates with the stapes." [http://palaeos.com/vertebrates/glossary/glossaryJL.html] synonym: "incus crus longum" EXACT [http://palaeos.com] synonym: "lenticular process" BROAD [] synonym: "lenticular process of incus" EXACT [FMA:52775] synonym: "processus lenticularis" BROAD [] synonym: "processus lenticularis (incus)" EXACT [FMA:52775] synonym: "processus lenticularis incudis" EXACT OMO:0003011 [FMA:52775, FMA:TA] xref: FMA:52775 xref: http://palaeos.com/vertebrates/bones/ear/images/Incus3.gif xref: SCTID:368928003 is_a: UBERON:0004530 ! bony projection relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0001688 {source="FMA"} ! incus bone property_value: taxon_notes "the lenticular process may be homologous to the shaft of the stapes and result from fusion of the former quadrate- stapes articulation. This speculation is consistent with the observation that artiodactyls have a very short lenticular process (Thewissen & Hussain (1993)), with perhaps greater length to the corresponding process of the stapes" xsd:string {source="http://palaeos.com/vertebrates/bones/ear/incus.html"} [Term] id: UBERON:0011601 name: gingiva of upper jaw def: "A gingiva that is part of a upper jaw region." [OBOL:automatic] subset: pheno_slim synonym: "gum of maxilla" EXACT [] synonym: "gum of upper jaw" EXACT [EMAPA:18970] synonym: "maxillary gum" RELATED [FMA:59763] synonym: "upper gingiva" EXACT [] synonym: "upper gum" RELATED [] synonym: "upper jaw gingiva" EXACT [FMA:59763] xref: EMAPA:18970 xref: FMA:59763 xref: NCIT:C54205 xref: SCTID:304703001 xref: UMLS:C0227121 is_a: UBERON:0001828 ! gingiva relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0011602 name: gingiva of lower jaw def: "A gingiva that is part of a lower jaw region." [OBOL:automatic] subset: pheno_slim synonym: "gum of lower jaw" EXACT [EMAPA:18967] synonym: "gum of mandible" EXACT [] synonym: "lower gingiva" EXACT [] synonym: "lower gum" RELATED [] synonym: "lower jaw gingiva" EXACT [FMA:59764] synonym: "lower jaw gum" RELATED [FMA:59764] synonym: "mandibular gum" RELATED [FMA:59764] xref: EMAPA:18967 xref: FMA:59764 xref: NCIT:C54204 xref: SCTID:304704007 xref: UMLS:C0227123 is_a: UBERON:0001828 ! gingiva relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0011603 name: coronoid tooth def: "Tooth that is attached to a coronoid bone." [https://orcid.org/0000-0002-6601-2165] synonym: "coronoid teeth" EXACT OMO:0003004 [AAO:0000104] xref: AAO:0000104 is_a: UBERON:0003268 ! tooth of lower jaw [Term] id: UBERON:0011604 name: carina of sternum def: "An extension of the sternum (breastbone) which runs axially along the midline of the sternum and extends outward, perpendicular to the plane of the ribs[WP]." [Wikipedia:Keel_(bird)] synonym: "avian keel" RELATED [] synonym: "carina" BROAD [] synonym: "keel" BROAD [] xref: Wikipedia:Keel_(bird) is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000975 ! sternum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Br%C3%A9chet.png" xsd:anyURI [Term] id: UBERON:0011605 name: supracoracoideus muscle of wing def: "A muscle in the bird's thorax region that originates from carina of the sternum, furcula, and sternal ribs and inserts onto proximal dorsal surface of the humerus. It acts as a primary elevator of the wing in upstroke. [Manual of Ornithology: Avian Structure and Function, by Proctor and Lynch, 1998]." [Wikipedia:Supracoracoideus#Muscular_system] synonym: "pectoralis minor" RELATED [] is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0008196 ! muscle of pectoral girdle property_value: action_notes "levator of the wing" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Wing_Muscles%2C_color.svg" xsd:anyURI [Term] id: UBERON:0011606 name: hyomandibular bone def: "Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]." [TAO:0000672, Wikipedia:Hyomandibula] subset: efo_slim synonym: "hyomandibula" BROAD [TAO:0000672] synonym: "hyomandibular" BROAD [TAO:0000672, Wikipedia:Hyomandibula] xref: EFO:0003556 xref: Wikipedia:Hyomandibula xref: ZFA:0000672 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone is_a: UBERON:0011608 ! hyomandibular element relationship: develops_from UBERON:0011607 {source="TAO"} ! hyomandibular cartilage property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibular-otic region joint (TAO:0001947)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps preopercle vertical limb-hyomandibula joint (TAO:0005278)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps quadrate-hyomandibula joint (TAO:0001801)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: external_definition "Replacement bone that is bilaterally paired and articulates with the neurocranium dorsally and the opercle posteriorly.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)", source="http://bgee.unil.ch/"} property_value: taxon_notes "In most teleosts, there is a symplectic, and the hyomandibula articulates with it anteroventrally." xsd:string [Term] id: UBERON:0011607 name: hyomandibular cartilage def: "Cartilage form of the hyomandibular element." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim synonym: "hyosymplectic cartilage" EXACT [ZFA:0001422] synonym: "symplectic cartilage" EXACT [TAO:0001422] xref: EFO:0003686 xref: TAO:0001422 xref: ZFA:0001422 is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage is_a: UBERON:0011608 ! hyomandibular element property_value: external_definition "Pharyngeal arch cartilage that is bilaterally paired and articulates with the chondrocranium dorsally, the opercle bone posteriorly, and the palatoquadrate cartilage anteriorly.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001422", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)", source="http://bgee.unil.ch/"} property_value: taxon_notes "The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks." xsd:string [Term] id: UBERON:0011608 name: hyomandibular element def: "The upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] synonym: "hyomandibula" RELATED [] synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibular-otic region joint (TAO:0001947)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps preopercle vertical limb-hyomandibula joint (TAO:0005278)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps quadrate-hyomandibula joint (TAO:0001801)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: external_comment "In most teleosts, there is a symplectic, and the hyomandibula articulates with it anteroventrally.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000672", ontology="TAO", source="Curator"} property_value: external_definition "Replacement bone that is bilaterally paired and articulates with the neurocranium dorsally and the opercle posteriorly.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011609 name: ceratohyal element synonym: "keratohyal element" RELATED [] is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton [Term] id: UBERON:0011610 name: ceratohyal cartilage xref: TAO:0001400 xref: ZFA:0001400 is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage is_a: UBERON:0011609 ! ceratohyal element property_value: axiom_lost_from_external_ontology "relationship loss: overlaps ceratohyal-branchiostegal ray joint (TAO:0001850)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001400", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dorsal hypohyal-urohyal joint (TAO:0001847)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001400", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps epihyal-branchiostegal ray joint (TAO:0001849)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001400", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps inter-ventral hypohyal joint (TAO:0001846)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001400", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps interhyal-epihyal joint (TAO:0001841)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001400", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps ventral hypohyal-urohyal joint (TAO:0001848)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001400", ontology="TAO"} property_value: external_definition "Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001400", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0011611 name: ceratohyal bone synonym: "anterior ceratohyal" EXACT [TAO:0000578] synonym: "anterohyal" EXACT [TAO:0000578] synonym: "anterohyals" RELATED OMO:0003004 [TAO:0000578] synonym: "ceratohyal" EXACT [TAO:0000578] synonym: "ceratohyal anterior" EXACT [TAO:0000578] synonym: "ceratohyal bone" EXACT [TAO:0000578] synonym: "ceratohyale" RELATED [AAO:0000666] synonym: "ceratohyals" RELATED OMO:0003004 [TAO:0000578] synonym: "ceratohyoid" NARROW SENSU [] synonym: "ceratohyoid bone" EXACT [] synonym: "distal ceratohyal" EXACT [TAO:0000578] synonym: "hyale" RELATED [AAO:0000666] synonym: "hyoid" RELATED [AAO:0000666] synonym: "keratohyale" RELATED [AAO:0000666] synonym: "rostral ceratohyal" EXACT [TAO:0000578] synonym: "zungenbeinknorpel" RELATED [AAO:0000666] xref: AAO:0000666 xref: SCTID:370641002 xref: TAO:0000578 xref: ZFA:0000578 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone is_a: UBERON:0011609 ! ceratohyal element relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage property_value: axiom_lost_from_external_ontology "relationship loss: overlaps ceratohyal-branchiostegal ray joint (TAO:0001850)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000578", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps ceratohyal-dorsal hypohyal joint (TAO:0001843)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000578", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps ceratohyal-ventral hypohyal joint (TAO:0001844)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000578", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps epihyal-ceratohyal joint (TAO:0001842)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000578", ontology="TAO"} property_value: external_definition "Replacement bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and posterior ceratohyal posteriorly.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000578", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0011612 name: hypohyal cartilage xref: TAO:0001868 is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage is_a: UBERON:0011613 ! hypohyal element property_value: external_definition "Pharyngeal arch cartilage that is bilaterally paired and articulates posteriorly with the ceratohyal cartilage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001868", ontology="TAO", source="TAO:wd"} [Term] id: UBERON:0011613 name: hypohyal element def: "The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal." [http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html] is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton [Term] id: UBERON:0011614 name: basihyal element def: "Skeletal element that is median and is the anterior-most element of the ventral hyoid arch." [TAO:0001891] xref: TAO:0001891 is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleton [Term] id: UBERON:0011615 name: basihyal cartilage def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch." [TAO:0001510] synonym: "copula 1" RELATED [TAO:0001510] xref: TAO:0001510 xref: ZFA:0001510 is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage is_a: UBERON:0011614 ! basihyal element [Term] id: UBERON:0011618 name: basihyal bone def: "Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch." [TAO:0000316] synonym: "basihyoid" EXACT [TAO:0000316] synonym: "glossohyal" EXACT [TAO:0000316] xref: TAO:0000316 xref: VSAO_RETIRED:0000007 xref: ZFA:0000316 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone is_a: UBERON:0011614 ! basihyal element relationship: develops_from UBERON:0011615 {source="TAO"} ! basihyal cartilage [Term] id: UBERON:0011619 name: stylohyoid bone def: "This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse." [MURDOCH:1758] xref: SCTID:370715004 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: taxon_notes "The stylohyoid bone is one of the four bones ( stylohyoid, ceratohyoid, basihyoid, thyrohyoid) of the hyoid apparatus in the horse. Other species have five bones, the fifth being the epihyoid that is not present in the horse. The stylohyoid bone in the horse is significantly larger compared to other bones of the hyoid apparatus and divides the guttural pouch into two chambers, medial and lateral. The hyoid apparatus consists of a series of bony rods, jointed together and forming a means of suspending the tongue and larynx from the skull" xsd:string {source="MURDOCH"} [Term] id: UBERON:0011620 name: basihyal lingual process def: "A projection on the basihyal bone. Laterally the lingual process is compressed. It has a blunt pointed free end, and its lateral surfaces are slightly concave. The dorsal border is thin and irregular, and the ventral border is thick and rough. In the living animal the lingual process is embedded within the root of the tongue." [MURDOCH:1080] synonym: "lingual process of basihyoid" EXACT [] synonym: "lingual process of basihyoid bone" EXACT [] synonym: "lingual process of hyoid" RELATED [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0011618 ! basihyal bone [Term] id: UBERON:0011621 name: thyrohyoid cartilage def: "This small finger of cartilage completes the connection between the thyrohyoid bone and the thyroid cartilage (rostral cornu)." [MURDOCH:2033] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] id: UBERON:0011622 name: thyrohyoid bone def: "Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx." [MURDOCH:1951] xref: SCTID:370708007 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] id: UBERON:0011623 name: horn of thyroid cartilage synonym: "cornu of thyroid cartilage" EXACT [FMA:55300] synonym: "thyroid cartilage horn" EXACT [FMA:55300] xref: FMA:55300 xref: SCTID:279518009 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001738 ! thyroid cartilage [Term] id: UBERON:0011624 name: superior horn of thyroid cartilage def: "The superior horn of thyroid cartilage is long and narrow, directed upward, backward, and medialward, and ends in a conical extremity, which gives attachment to the lateral hyothyroid ligament." [Wikipedia:Superior_horn_of_thyroid_cartilage] synonym: "cornu superius (cartilago thyroidea)" EXACT [FMA:55294] synonym: "cornu superius cartilaginis thyroideae" EXACT OMO:0003011 [] synonym: "superior cornu of thyroid cartilage" EXACT [FMA:55294] xref: FMA:55294 xref: SCTID:279520007 xref: Wikipedia:Superior_horn_of_thyroid_cartilage is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage [Term] id: UBERON:0011625 name: inferior horn of thyroid cartilage def: "The inferior horn of thyroid cartilage is short and thick; it is directed downward, with a slight inclination forward and medialward, and presents, on the medial side of its tip, a small oval articular facet for articulation with the side of the cricoid cartilage." [Wikipedia:Inferior_horn_of_thyroid_cartilage] synonym: "cornu inferius (cartilago thyroidea)" EXACT [FMA:55297] synonym: "cornu inferius cartilaginis thyroidea" EXACT OMO:0003011 [FMA:55297, FMA:TA] synonym: "cornu inferius cartilaginis thyroideae" EXACT OMO:0003011 [] xref: FMA:55297 xref: SCTID:279521006 xref: Wikipedia:Inferior_horn_of_thyroid_cartilage is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage [Term] id: UBERON:0011626 name: tympanohyoid cartilage def: "The terminal segment in the chain of skeletal elements of the hyoid apparatus. One of a pair of rods of cartilage that connect the hyoid bone to the styloid process of the petrous part of the temporal bone." [http://medical-dictionary.thefreedictionary.com/tympanohyoid] xref: SCTID:370702008 is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] id: UBERON:0011627 name: orbital part of frontal bone def: "A zone of the frontal bone that consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch." [Wikipedia:Orbital_part_of_frontal_bone] synonym: "pars orbitalis" RELATED [Wikipedia:Orbital_part_of_frontal_bone] synonym: "pars orbitalis (os frontale)" EXACT [FMA:52849] synonym: "pars orbitalis ossis frontalis" EXACT OMO:0003011 [Wikipedia:Orbital_part_of_frontal_bone] xref: FMA:52849 xref: Wikipedia:Orbital_part_of_frontal_bone is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium [Term] id: UBERON:0011628 name: early premaxilla synonym: "future premaxilla" EXACT [] xref: EHDAA2:0001495 is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011597 ! bone of upper jaw relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process mesenchyme from neural crest relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003113 {source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011629 name: supratemporal bone synonym: "supratemporal" EXACT [] is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011630 name: intertemporal bone synonym: "intertemporal" EXACT [] is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011631 name: tabular bone synonym: "tabular" EXACT [] is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011634 name: ectopterygoid bone def: "A palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly." [http://palaeos.com/vertebrates/glossary/glossaryE.html] subset: efo_slim synonym: "ectopterygoid" EXACT [TAO:0000656] synonym: "ectopterygoids" RELATED OMO:0003004 [ZFA:0000656] xref: EFO:0003552 xref: TAO:0000656 xref: ZFA:0000656 is_a: UBERON:0011597 ! bone of upper jaw is_a: UBERON:0012071 ! palate bone property_value: external_comment "The ectopterygoid is often toothed.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000656", ontology="TAO", source="Curator"} property_value: external_definition "Dermal bone that forms the lateral border of the palate and articulates with the quadrate posteriorly, the entopterygoid medially and the dermopalatine and/or autopalatine antero-laterally. The ectopterygoid is a paired bone.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000656", ontology="TAO", source="TAO:ga_tg", source="ZFIN:curator"} property_value: external_ontology_notes "taken from TAO but is present in tetrapods" xsd:string {external_ontology="TAO"} [Term] id: UBERON:0011635 name: splenial bone def: "The splenial is a small bone in the lower jaw of reptiles, amphibians and birds, usually located on the lingual side (closest to the tongue) between the angular and suprangular." [Wikipedia:Splenial] synonym: "splenial" EXACT [AAO:0000573] xref: AAO:0000573 xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif xref: Wikipedia:Splenial is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 {source="AAO"} ! dermal bone relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011636 name: surangular bone def: "The surangular is a dermal bone of the lower jaw. It typically covers much of the dorsal and lateral surface of the posterior jaw and variably extends onto the medial (inside) surface. The surangular articulates with and supports the articular, which forms the jaw joint with the quadrate in most vertebrates, and is in turn supported by the angular. More distally, the surangular bridges the mandibular fenestra, if one is present. It may also bear a raised dorsal coronoid process, an important attachment site for the mandibular adductors. At its distal (or rostral) end, the surangular meets the dentary, the main tooth-bearing bone of the lower jaw in most vertebrates." [http://palaeos.com/vertebrates/bones/dermal/mandibular-surangular.html] synonym: "supra-angular" RELATED [https://github.com/obophenotype/uberon/issues/164] synonym: "supra-angular bone" RELATED [https://github.com/obophenotype/uberon/issues/164] synonym: "supraangular" RELATED [https://github.com/obophenotype/uberon/issues/164] synonym: "supraangular bone" RELATED [https://github.com/obophenotype/uberon/issues/164] synonym: "suprangular" RELATED [https://github.com/obophenotype/uberon/issues/164, Wikipedia:Suprangular] synonym: "suprangular bone" RELATED [https://github.com/obophenotype/uberon/issues/164] synonym: "surangular" EXACT [TAO:0002287] xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif xref: http://palaeos.com/vertebrates/bones/dermal/images/Surangular1.gif xref: TAO:0002287 is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 {source="Palaeos", source="TAO"} ! dermal bone relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium property_value: external_definition "Dermal bone of the suspensorium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002287", ontology="TAO", source="TAO:wd"} property_value: taxon_notes "In some lepospondyls, and in frogs and salamanders, the surangular is absent. However, it becomes increasingly significant in the anthracosaur lineage. In turtles, it is one of the two principle bones of the lower jaw. In lepidosaurs, it is less important because of the development of a separate coronoid bone. In advanced lizards and pythonomorphs, it may fuse with the articular and perhaps other bones and loses its separate identity. In syanapsids, a secondary jaw joint develops between the surangular and the squamosal, which becomes the unique mammalian jaw articulation. However, the surangular fuses with the dentary and becomes the unitary mammalian 'mandible' without a separate identity" xsd:string property_value: taxon_notes "Nevertheless, it is not completely clear that this[osteichthyans] surangular is homologous with the surangular in tetrapods" xsd:string {source="paleos"} [Term] id: UBERON:0011637 name: prearticular bone def: "Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage." [AAO:0000458] synonym: "prearticular" EXACT [AAO:0000458] xref: AAO:0000458 xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 {source="AAO"} ! dermal bone relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011638 name: pharyngeal arch 8 synonym: "branchial arch 6" RELATED [] synonym: "gill arch 6" EXACT [] synonym: "visceral arch 8" EXACT [] is_a: UBERON:0008896 {source="TAO"} ! post-hyoid pharyngeal arch property_value: pharyngeal_arch_number "8" xsd:nonNegativeInteger [Term] id: UBERON:0011639 name: frontoparietal bone def: "An anuran dermal bone that usually is paired and roofs the braincase." [AAO:0000207] synonym: "fronto-parietaux" RELATED [AAO:0000207] synonym: "frontoparietal" EXACT [AAO:0000207] synonym: "os fronto-parietale" RELATED [AAO:0000207] synonym: "parietaux" RELATED [AAO:0000207] synonym: "parietofrontal" RELATED [AAO:0000207] xref: AAO:0000207 is_a: UBERON:0008907 {source="AAO"} ! dermal bone relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011640 name: palatoglossal arch def: "A fold that lies between the mouth and pharynx and marks the posterior border of the mouth." [ISBN:0073040584, Wikipedia:Palatoglossal_arch] synonym: "anterior pillar of fauces" EXACT [FMA:55024] synonym: "arcus glossopalatinus" EXACT [Wikipedia:Palatoglossal_arch] synonym: "arcus palatoglossus" EXACT [Wikipedia:Palatoglossal_arch] synonym: "glossopalatine arch" EXACT [FMA:55024] synonym: "plica anterior faucium" EXACT OMO:0003011 [FMA:TA] xref: FMA:55024 xref: SCTID:276958001 xref: Wikipedia:Palatoglossal_arch is_a: UBERON:0034921 {source="FMA"} ! multi organ part structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0011641 name: odontogenic mesenchyme of molar def: "An odontogenic papilla that is part of a molar tooth [Automatically generated definition]." [OBOL:automatic] synonym: "molar mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "odontogenic mesenchyme of molar tooth" EXACT [OBOL:automatic] xref: EMAPA:32881 xref: MA:0003230 is_a: UBERON:0003856 ! uncondensed odontogenic mesenchyme relationship: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0011642 name: oral epithelium from ectoderm def: "An epithelium that develops_from a ectoderm and is part of a oral epithelium." [OBOL:automatic] xref: EHDAA2:0004137 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0009479 {source="EHDAA2"} ! ectoderm of buccopharyngeal membrane relationship: part_of UBERON:0002424 ! oral epithelium [Term] id: UBERON:0011643 name: puboischiofemoralis internus muscle alt_id: UBERON:0014843 def: "A single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur." [ISBN:0073040584] synonym: "puboischiofemoralis internus" EXACT [] is_a: UBERON:0004518 ! muscle of vertebral column is_a: UBERON:0014842 ! puboischiofemoralis muscle property_value: taxon_notes "3 muscles differentiate from this: psoas, iliacus and pectineus." xsd:string [Term] id: UBERON:0011644 name: puboischiofemoralis externus muscle alt_id: UBERON:0014844 def: "A single large ventral muscle in lower tetrapods that runs from the pubis and ischium to the femur." [ISBN:0073040584] synonym: "puboischiofemoralis externus" EXACT [] is_a: UBERON:0014842 ! puboischiofemoralis muscle property_value: taxon_notes "obturator externus and quadratus femoris are derivatives" xsd:string [Term] id: UBERON:0011645 name: iliofemoralis muscle def: "Limb extensor that runs from ilium to femur." [ISBN:0073040584] synonym: "iliofemoralis" EXACT [] is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0011646 name: patagialis muscle def: "A muscle of the patagium that attaches to the clavicle and the metacarpal." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0008196 ! muscle of pectoral girdle relationship: part_of UBERON:0010856 ! patagium [Term] id: UBERON:0011647 name: depressor mandibulae muscle synonym: "depressor labi mandibularis" EXACT [] synonym: "depressor labi mandibularis muscle" EXACT [] synonym: "depressor mandibulae" EXACT [AAO:0010715] xref: AAO:0010715 is_a: UBERON:0001577 ! facial muscle is_a: UBERON:0011648 {source="AAO"} ! jaw muscle property_value: homology_notes "The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000813", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.398", source="http://bgee.unil.ch/"} property_value: taxon_notes "Homolog of levator operculi and epihyoidean - or in mammals, the stapedius (the digastric opens the jaws)[Kardong] The (sphenodon) m. Depressor Mandibulae originates from the posterodorsal edge of the parietal and squamosal, and from a small mid-line portion of connective tissue" xsd:string {source="http://palaeo-electronica.org/2009_2/179/other.htm"} [Term] id: UBERON:0011648 name: jaw muscle subset: efo_slim subset: pheno_slim synonym: "mandibular muscle" EXACT [TAO:0000236] synonym: "mandibular muscles" EXACT OMO:0003004 [TAO:0000236] xref: AAO:0000247 xref: EFO:0003511 xref: TAO:0000236 xref: XAO:0003269 xref: ZFA:0000236 is_a: UBERON:0002376 ! cranial muscle [Term] id: UBERON:0011649 name: levator operculi def: "Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw." [ZFA:0000537] synonym: "levator operculae" EXACT [ZFA:0000537] synonym: "levator operculi muscle" EXACT [] xref: TAO:0000537 xref: ZFA:0000537 is_a: UBERON:0005493 {source="ZFA"} ! hyoid muscle relationship: develops_from UBERON:0003066 {source="ISBN:0073040584"} ! pharyngeal arch 2 property_value: homology_notes "The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000813", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.398", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011650 name: epihyoidean comment: Muscle in sharks that is homologous to levator operculi and depressor mandibulae / stapedius is_a: UBERON:0005493 ! hyoid muscle relationship: develops_from UBERON:0003066 {source="ISBN:0073040584"} ! pharyngeal arch 2 property_value: homology_notes "The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000813", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.398", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011651 name: ventral head of rib def: "Ventral head of a bicapitate rib. It articulates with the parapophysis[AAO]." [AAO:0000723] synonym: "capitulum" NARROW [] synonym: "capitulum of costa" EXACT [] synonym: "capitulum of rib" EXACT [AAO:0000723] synonym: "costal capitulum" EXACT [] xref: AAO:0000723 is_a: UBERON:0002230 ! head of rib property_value: taxon_notes "Ribs of primitive tetrapods are bicipital (having two heads)" xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0011652 name: dorsal head of rib def: "Dorsal head of a bicapitate rib. It articulates with the diapophysis[AAO]." [AAO:0000722] synonym: "tuberculum" BROAD [AAO:0000722] synonym: "tuberculum of rib" EXACT [] xref: AAO:0000722 xref: EMAPA:37734 {source="MA:th"} is_a: UBERON:0002230 ! head of rib property_value: taxon_notes "Ribs of primitive tetrapods are bicipital (having two heads)" xsd:string {source="ISBN:0073040584"} property_value: terminology_notes "sometimes called the tuberculum, but not to be confused with the tubercle, which is between body and neck" xsd:string [Term] id: UBERON:0011653 name: diapophysis of neural arch def: "Paired processes that arise near the midpoint of the neural arch lamina, for the attachment of the tuberculum of two-headed ribs. Also called transverse processes. In anurans, the term diapophysis is used in reference to the modified transverse processes of the sacral vertebra elaborated for support of the pelvic girdle." [AAO:0000706] synonym: "diapophysis" BROAD [AAO:0000706] synonym: "transverse process" BROAD [AAO:0000706] xref: AAO:0000706 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003861 {source="ISBN:0073040584"} ! neural arch property_value: editor_note "taken from AAO, requires attention of amphibian anatomy experts, in particular, relationship to transverse processes" xsd:string [Term] id: UBERON:0011655 name: interclavicle def: "Dermal bone of pectoral girdle that is median and ventral in position." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000161] synonym: "interclavicle bone" EXACT [http://orcid.org/0000-0002-6601-2165] xref: VSAO:0000161 xref: Wikipedia:Interclavicle is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 {source="VSAO"} ! dermal bone relationship: never_in_taxon NCBITaxon:32525 relationship: present_in_taxon NCBITaxon:9257 property_value: editor_note "See discussion on pectoral girdles - change relationship to overlaps? Kardong: enlarged oval scale" xsd:string property_value: taxon_notes "Present in therapids and monotremes, reduced in size in marsupials and placentals. In birds, the interclavicle is fused with the clavicles to form the furcula (wishbone); the furcula forms a 'Y' shape and the interclavicle is the stem of the 'Y'." xsd:string [Term] id: UBERON:0011657 name: dermal element of plastron def: "Fused ventral dermal element constituting the plastron." [ISBN:0073040584] synonym: "plastral plate" RELATED [ISBN:0073040584] synonym: "plastron element" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0008276 ! plastron [Term] id: UBERON:0011658 name: epiplastron def: "Paired dermal bone that is part of the anterior region of the plastron. The epiplastron is found only in turtles. [PHENOSCAPE:ad]." [ISBN:0073040584, PHENOSCAPE:ad, PHENOSCAPE:mah] comment: Derived ancestrally from the clavicle. synonym: "clavicle" RELATED [ISBN:0073040584] is_a: UBERON:0011657 ! dermal element of plastron is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0011659 name: entoplastron def: "A median bone at the anterior margin of the plastron." [ISBN:0073040584] synonym: "interclavicle" RELATED [ISBN:0073040584] is_a: UBERON:0011657 ! dermal element of plastron [Term] id: UBERON:0011660 name: hypoplastron def: "A paired plastron element that is in the posterior part of the plastron, anterior to the xiphiplastron and posterior to the hyoplastron." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0011657 ! dermal element of plastron is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0011661 name: xiphiplastron def: "A paired plastron element that is in the posterior part of the plastron, posterior to the hypoplastron." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0011657 ! dermal element of plastron is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0011662 name: plastron-carapace bridge is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0008276 ! plastron [Term] id: UBERON:0011663 name: anterior plastron-carapace bridge synonym: "anterior bridge struct" RELATED [] is_a: UBERON:0011662 ! plastron-carapace bridge [Term] id: UBERON:0011664 name: posterior plastron-carapace bridge synonym: "posterior bridge struct" RELATED [] is_a: UBERON:0011662 ! plastron-carapace bridge [Term] id: UBERON:0011665 name: carapace bone def: "Fused dorsal element constituting the carapace of a turtle shell." [ISBN:0073040584] comment: The carapace contains a mix of dermal bone and rib cage synonym: "carapace plate" RELATED [] is_a: UBERON:0004247 ! bone of dorsum relationship: part_of UBERON:0008275 ! carapace [Term] id: UBERON:0011666 name: peripheral plate of carapace def: "One of a series of bones around the edge of the carapace." [ISBN:0073040584] synonym: "marginal plate of carapace" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0011665 ! carapace bone [Term] id: UBERON:0011667 name: pleural plate of carapace def: "One of eight pairs of plates on the carapace, forming two rows adjacent to the peripheral plates." [ISBN:0073040584] synonym: "lateral plate of carapace" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0011665 ! carapace bone is_a: UBERON:0015212 ! lateral structure property_value: structure_notes "A combination of ribs and fused dermal bone" xsd:string {source="WP"} [Term] id: UBERON:0011668 name: obsolete nuchal plate of carapace is_obsolete: true replaced_by: UBERON:0011671 [Term] id: UBERON:0011669 name: neural plate of carapace def: "One of a series of plates on the dorsal midline of the turtle shell, posterior to the nuchal bone." [ISBN:0073040584] synonym: "neural plate" BROAD [] synonym: "vertebral plate of carapace" BROAD [] is_a: UBERON:0011665 ! carapace bone property_value: taxon_notes "In many species of Pleurodire they are submerged below the pleurals" xsd:string {source="WP"} [Term] id: UBERON:0011670 name: pygal plate of carapace def: "One of three plates on the posterior end of the carapace, posterior to the neural plates." [ISBN:0073040584] is_a: UBERON:0011665 ! carapace bone [Term] id: UBERON:0011671 name: nuchal plate of carapace def: "The anteriormost plate of the carapace." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584] is_a: UBERON:0011665 ! carapace bone [Term] id: UBERON:0011672 name: suprapygal plate of carapace def: "A plate that lies between the posteriormost neural plate and the pygal plate." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584] synonym: "suprapygal bone" EXACT [] synonym: "suprapygal plate" EXACT [] is_a: UBERON:0011665 ! carapace bone [Term] id: UBERON:0011673 name: plastron scute def: "A scute that is part of a plastron." [OBOL:automatic] is_a: UBERON:0008201 ! scute relationship: part_of UBERON:0008276 ! plastron property_value: editor_note "consider making subclasses as per dermal elements" xsd:string [Term] id: UBERON:0011674 name: carapace scute def: "A scute that is part of a carapace." [OBOL:automatic] is_a: UBERON:0018317 ! dorsal osteoderm relationship: part_of UBERON:0008275 ! carapace property_value: editor_note "consider making subclasses as per dermal elements" xsd:string [Term] id: UBERON:0011675 name: perichordal ring def: "Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature." [ISBN:0073040584] xref: AAO:0000738 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0007862 {source="AAO"} ! perichordal tissue [Term] id: UBERON:0011676 name: subdivision of organism along main body axis def: "A major subdivision of an organism that divides an organism along its main body axis (typically anterio-posterior axis). In vertebrates, this is based on the vertebral column." [https://orcid.org/0000-0002-6601-2165] subset: upper_level synonym: "axial subdivision of organism" EXACT [] synonym: "body segment" RELATED [] synonym: "main body segment" RELATED [] is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0013701 ! main body axis property_value: editor_note "Ideally this would be disjoint with analagous class for appendicular axes, but currently 'appendages' like antennae, horns cause a problem" xsd:string [Term] id: UBERON:0011677 name: trunk vertebra def: "A vertebra in the trunk region. For tetrapods, includes lumbar and thoracic vertebrae. Excludes caudal/coccygeal vertebra, which are located posteriorly. In tetrapods this includes thoracic, lumbar and sacral vertebrae, and excludes the cervical vertebrae, which are located anteriorly." [UBERONREF:0000006] subset: pheno_slim synonym: "presacral vertebra" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "thoracolumbar vertebra" EXACT [] is_a: UBERON:0003463 ! trunk bone is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004451 {is_inferred="true"} ! trunk or cervical vertebra relationship: fma_set_term FMA:72066 relationship: part_of UBERON:0009568 ! trunk region of vertebral column [Term] id: UBERON:0011678 name: hindlimb intermedium bone def: "A proximal tarsal bone that articulates with the fibula." [http://orcid.org/0000-0002-6601-2165] synonym: "hidlimb intermedium" EXACT [] synonym: "intermedium" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "intermedium (hind)" EXACT [AAO:0000923] synonym: "intermedium of pes" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal intermedium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: AAO:0000923 is_a: UBERON:0011679 ! proximal tarsal bone property_value: taxon_notes "The amphibian intermedium forms part of the astragalus in amniotes[http://www.science.marshall.edu/okeefef/PDFS/OKeefe_et_al_2006_JMorph.pdf]" xsd:string [Term] id: UBERON:0011679 name: proximal tarsal bone def: "A tarsal bone that connected_to a hindlimb zeugopod skeleton." [OBOL:automatic] is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0014395 ! proximal mesopodial bone is_a: UBERON:0015081 ! proximal tarsal endochondral element relationship: develops_from UBERON:0015082 ! proximal tarsal cartilage [Term] id: UBERON:0011683 name: adductor mandibulae def: "An adductor muscle that acts on the jaw. In some species, this is subdivided into segments based on attachment." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/266] subset: efo_slim synonym: "adductor mandibulae complex" RELATED INCONSISTENT [EFO:0000227] synonym: "dorsal adductor mandibulae" EXACT [ZFA:0007049] synonym: "levator mandibulae" RELATED [] synonym: "m. adductor mandibulae" EXACT [] xref: EFO:0000227 xref: TAO:0007049 xref: ZFA:0007049 is_a: UBERON:0011145 ! adductor muscle is_a: UBERON:0011648 {source="ZFA"} ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle property_value: external_definition "Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing[ZFA:0007049]." xsd:string {source="ZFA:0007049"} property_value: homology_notes "The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000698", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.333-334 and same reference Table 10-4", source="http://bgee.unil.ch/"} property_value: taxon_notes "In teleosts, the complex is composed of several derived muscles that attach to different parts of the highly kinetic skull." xsd:string {source="ISBN:0073040584", taxon="NCBITaxon:32443"} [Term] id: UBERON:0011684 name: levator palatoquadrati def: "A muscle derivative of the mandibular levator that runs from the chondrocranium to the palatoquadrate cartilage. Found in sharks." [ISBN:0073040584] is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: present_in_taxon NCBITaxon:119203 property_value: taxon_notes "In some fishes such as the chimera and in tetrapods the palatoquadrate becomes fused to the braincase and this muscle is absent." xsd:string {source="ISBN:0073040584"} [Term] id: UBERON:0011685 name: preorbitalis muscle def: "A jaw muscle arises near the orbit and tapers as it passes posteriorly to its insertion on the adductor mandibulae. Found in sharks." [ISBN:0073040584] synonym: "preorbitalis" EXACT [] is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: part_of UBERON:0011683 {source="ISBN:0073040584"} ! adductor mandibulae relationship: present_in_taxon NCBITaxon:119203 [Term] id: UBERON:0011686 name: spiracularis muscle synonym: "spiracularis" EXACT [] is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: present_in_taxon NCBITaxon:7777 {source="Kardong"} [Term] id: UBERON:0011687 name: levator hyomandibulae muscle synonym: "levator hyomandibulae" EXACT [] is_a: UBERON:0005493 ! hyoid muscle relationship: develops_from UBERON:0003066 {source="ISBN:0073040584"} ! pharyngeal arch 2 [Term] id: UBERON:0011688 name: pre-enameloid def: "Odontoid tissue that is avascular non-mineralized matrix that is deposited by odontoblasts and ameloblasts that are excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000114] synonym: "non-mineralized enameloid tissue" EXACT [VSAO:curator] xref: VSAO:0000114 xref: XAO:0004203 is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue [Term] id: UBERON:0011692 name: enameloid def: "Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000113] synonym: "bitypic enamel" EXACT [VSAO:curator] synonym: "durodentine" EXACT [VSAO:curator] synonym: "enameloid tissue" EXACT [VSAO:curator] synonym: "vitrodentine" EXACT [VSAO:curator] xref: VHOG:0001565 xref: VSAO:0000113 xref: XAO:0004199 xref: ZFA:0005142 is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue is_a: UBERON:4000013 ! mineralized skeletal tissue relationship: develops_from UBERON:0011688 {source="VSAO"} ! pre-enameloid relationship: part_of UBERON:0001091 {source="ZFA"} ! calcareous tooth [Term] id: UBERON:0011693 name: extraembryonic portion of umbilical artery synonym: "extraembryonic umbilical artery" EXACT [VHOG:0001157] xref: VHOG:0001157 is_a: UBERON:0000478 {source="EHDAA2-abduced"} ! extraembryonic structure is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001310 ! umbilical artery relationship: part_of UBERON:0007807 {source="EHDAA2-abduced"} ! connecting stalk vasculature [Term] id: UBERON:0011694 name: embryo portion of umbilical artery def: "Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta." [VHOG:0000599] synonym: "embryonic umbilical artery" EXACT [VHOG:0000599] xref: VHOG:0000599 is_a: UBERON:0001637 ! artery property_value: external_definition "Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000599", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011695 name: embryonic cardiovascular system def: "A cardiovascular system that is part of a conceptus." [OBOL:automatic] synonym: "conceptus cardiovascular system" EXACT [] synonym: "embryonic circulatory system" RELATED [] synonym: "fetal circulatory system" RELATED [] xref: EHDAA2:0000216 xref: FMA:305965 xref: NCIT:C34148 is_a: UBERON:0004535 ! cardiovascular system relationship: part_of UBERON:0004716 ! conceptus [Term] id: UBERON:0011696 name: left extraembryonic umbilical artery synonym: "extraembryonic umbilical artery left" EXACT [EHDAA2:0000937] xref: EHDAA2:0000937 is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery [Term] id: UBERON:0011697 name: right extraembryonic umbilical artery synonym: "extraembryonic umbilical artery right" EXACT [EHDAA2:0001721] xref: EHDAA2:0001721 is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery [Term] id: UBERON:0011698 name: midgut loop def: "Portion of midgut after it bends around the superior mesenteric artery." [Wikipedia:Midgut] xref: EMAPA:17036 xref: NCIT:C34211 xref: UMLS:C1513298 {source="ncithesaurus:Midgut_Loop"} xref: VHOG:0000673 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001045 {source="VHOG"} ! midgut [Term] id: UBERON:0011737 name: caudate lobe hepatic sinusoid def: "A hepatic sinusoid that is part of a caudate lobe of liver." [OBOL:automatic] synonym: "liver right caudate lobe hepatic sinusoids" EXACT [EHDAA2:0001006] xref: EHDAA2:0001006 xref: EHDAA:6992 xref: EMAPA:18314 xref: VHOG:0000711 is_a: UBERON:0009548 ! hepatic sinusoid of left of lobe of liver is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver relationship: part_of UBERON:0001117 ! caudate lobe of liver [Term] id: UBERON:0011738 name: quadrate lobe hepatic sinusoid def: "A hepatic sinusoid that is part of a quadrate lobe of liver." [OBOL:automatic] synonym: "liver right quadrate lobe hepatic sinusoids" EXACT [EHDAA2:0001013] xref: EHDAA2:0001013 xref: EHDAA:8084 xref: EMAPA:18319 xref: VHOG:0000712 is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver relationship: part_of UBERON:0001116 ! quadrate lobe of liver [Term] id: UBERON:0011741 name: cardiac valve leaflet synonym: "valve leaflet" RELATED [MA:0003179] xref: EMAPA:35903 xref: MA:0003179 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000946 ! cardiac valve [Term] id: UBERON:0011742 name: aortic valve leaflet def: "A cardiac valve leaflet that is part of a aortic valve." [OBOL:automatic] subset: pheno_slim synonym: "aortic valve leaflets" EXACT [VHOG:0000819] xref: EMAPA:18627 xref: VHOG:0000819 is_a: UBERON:0011741 ! cardiac valve leaflet relationship: part_of UBERON:0002137 ! aortic valve relationship: part_of UBERON:0010172 {source="MP"} ! bulb of aorta property_value: homology_notes "Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000819", ontology="VHOG", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011745 name: pulmonary valve leaflets def: "A cardiac valve leaflet that is part of a pulmonary valve." [OBOL:automatic] subset: pheno_slim xref: EMAPA:18629 xref: VHOG:0000820 is_a: UBERON:0011741 ! cardiac valve leaflet relationship: part_of UBERON:0002146 ! pulmonary valve property_value: homology_notes "Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000820", ontology="VHOG", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011754 name: genital swelling def: "Paired structures in the embryo that represent the final stage of development of the caudal end of the external genitals before sexual differentiation. In both males and females the two swellings merge: in the female, they become the posterior labial commissure; In the male, they become the scrotum." [Wikipedia:Labioscrotal_swelling] synonym: "labioscrotal swelling" EXACT [] synonym: "tuberculum labioscrotale" RELATED OMO:0003011 [Wikipedia:Labioscrotal_swelling] xref: EMAPA:30074 xref: EMAPA:35377 xref: VHOG:0000976 xref: Wikipedia:Labioscrotal_swelling is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0005876 ! undifferentiated genital tubercle property_value: editor_note "todo - add parthood relationships to tubercles" xsd:string [Term] id: UBERON:0011755 name: female labial swelling def: "A genital swelling that is part of a female reproductive system." [OBOL:automatic] synonym: "labial primordium" RELATED [] synonym: "labial swelling" BROAD [EMAPA:18329] synonym: "labioscrotal swelling of female" EXACT [EMAPA:30423] xref: EHDAA2:0000501 xref: EHDAA:9363 xref: EMAPA:18329 xref: EMAPA:30423 is_a: UBERON:0011754 ! genital swelling relationship: develops_from UBERON:0006233 ! female genital tubercle relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0011756 name: male genital swelling def: "A genital swelling that is part of a male reproductive organ." [OBOL:automatic] synonym: "labioscrotal swelling of male" EXACT [EMAPA:30509] synonym: "scrotal bulge" EXACT [] synonym: "scrotal primordium" EXACT [] xref: EHDAA2:0001049 xref: EMAPA:30509 is_a: UBERON:0011754 ! genital swelling relationship: develops_from UBERON:0006261 ! male genital tubercle relationship: part_of UBERON:0003135 ! male reproductive organ [Term] id: UBERON:0011757 name: differentiated genital tubercle synonym: "phallus" RELATED [Wikipedia:Primordial_phallus] synonym: "phallus primordialis" RELATED OMO:0003011 [Wikipedia:Primordial_phallus] synonym: "primordial phallus" RELATED [Wikipedia:Primordial_phallus] xref: NCIT:C34274 xref: UMLS:C1514448 {source="ncithesaurus:Primordial_Phallus"} xref: Wikipedia:Primordial_phallus is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0005876 ! undifferentiated genital tubercle relationship: part_of UBERON:0004176 ! external genitalia [Term] id: UBERON:0011765 name: jugular lymph sac def: "An embryonic lymph sac that forms at the junction of the future internal jugular/anterior cardinals and subclavian veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383, VHOG:0001000] xref: EMAPA:18249 xref: NCIT:C34196 xref: VHOG:0001000 is_a: UBERON:0034953 ! embryonic lymph sac property_value: external_definition "Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins. [Wikipedia:Lymphatic_system][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001000", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011766 name: left recurrent laryngeal nerve synonym: "left recurrent laryngeal branch" EXACT [EMAPA:25350] synonym: "left recurrent laryngeal nerve" EXACT [FMA:14469] synonym: "vagus X nerve left recurrent laryngeal branch" EXACT [MA:0001107] xref: EMAPA:25350 xref: FMA:14469 xref: MA:0001107 xref: SCTID:280300006 is_a: UBERON:0003716 ! recurrent laryngeal nerve is_a: UBERON:0015212 ! lateral structure property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/64/Recurrent_laryngeal_nerve.svg" xsd:anyURI property_value: taxon_notes "The left nerve is longer than the right, because it crosses under the arch of the aorta at the ligamentum arteriosum.[WP]" xsd:string [Term] id: UBERON:0011767 name: right recurrent laryngeal nerve synonym: "right recurrent laryngeal branch" EXACT [EMAPA:17275] synonym: "right recurrent laryngeal nerve" EXACT [FMA:14468] synonym: "vagus X nerve right recurrent laryngeal branch" EXACT [MA:0001108] xref: EMAPA:17275 xref: FMA:14468 xref: MA:0001108 xref: SCTID:280299003 is_a: UBERON:0003716 ! recurrent laryngeal nerve is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0011768 name: pineal gland stalk synonym: "epiphyseal stalk" EXACT [ZFA:0001292] synonym: "habenula" RELATED [] synonym: "pineal stalk" EXACT [TAO:0001292] xref: BAMS:PIS xref: EMAPA:19036 xref: MBA:730 xref: neuronames:1966 xref: TAO:0001292 xref: VHOG:0001360 xref: ZFA:0001292 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001905 {source="EMAPA", source="VHOG"} ! pineal body property_value: axiom_lost_from_external_ontology "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001292", ontology="TAO"} property_value: editor_note "compare with habenula" xsd:string property_value: external_definition "The stalk emanates from the diencephalic roof at a left-of-medial position.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001292", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "The epithalamus contains the epiphysis (pineal gland and related structures), which is located at the end of a stalk, the epiphyseal stalk.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001360", ontology="VHOG", source="ISBN:978-0471210054 Butler AB, Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.66", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011769 name: cartilaginous projection def: "Anatomical projection that is composed of cartilage tissue." [VSAO:wd] synonym: "cartilage process" EXACT [] synonym: "cartilaginous process" EXACT [] xref: FMA:284626 is_a: UBERON:0004529 ! anatomical projection [Term] id: UBERON:0011770 name: mentomeckelian def: "Paired, cylindrical, and small bones of endochondral origin that lie anteromedial to the anterior end of Meckel's cartilage. The precursors of the mentomeckelian bones are the larval infrarostral cartilages." [AAO:0000301] synonym: "dentale" RELATED [AAO:0000301] synonym: "pars mentalis" RELATED [AAO:0000301] xref: AAO:0000301 is_a: UBERON:0002513 {source="AAO"} ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw relationship: develops_from UBERON:3000237 ! infrarostral cartilage [Term] id: UBERON:0011771 name: obsolete larval structure def: "Anatomical structure that is part of the larva." [AAO:0000265] comment: Obsolete term in XAO - XAO:0003058 is_obsolete: true consider: AAO:0000265 [Term] id: UBERON:0011772 name: lower jaw opening def: "An anatomical space that is part of a bone of lower jaw." [OBOL:automatic] xref: AAO:0000273 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004768 ! bone of lower jaw [Term] id: UBERON:0011773 name: upper jaw opening def: "An anatomical space that is part of a bone of upper jaw." [OBOL:automatic] xref: AAO:0000621 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0011597 ! bone of upper jaw [Term] id: UBERON:0011774 name: utriculosaccular duct def: "A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear." [http://www.merriam-webster.com/medical/utriculosaccular%20duct] comment: Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection synonym: "Böttcher's canal" EXACT [http://en.wikipedia.org] synonym: "ductus utricosaccularis" EXACT [FMA:61243] synonym: "utricosaccular duct" EXACT [] synonym: "utricosaccular duct of membranous labyrinth" EXACT [FMA:61243] synonym: "utriculo-saccular duct" EXACT [] xref: EMAPA:37980 {source="MA:th"} xref: FMA:61243 xref: NCIT:C33845 xref: SCTID:279811007 is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0001862 {source="MP"} ! vestibular labyrinth [Term] id: UBERON:0011775 name: vagus nerve nucleus def: "A cranial nerve nucleus that is associated with a vagus nerve." [OBOL:automatic] synonym: "nodosal nucleus" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of vagal nerve" EXACT [] synonym: "nucleus of vagal X nerve" EXACT [] synonym: "nucleus of vagus nerve" EXACT [FMA:54573] synonym: "nucleus of Xth nerve" EXACT [] synonym: "tenth cranial nerve nucleus" EXACT [FMA:54573] synonym: "vagal nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vagal X nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vagus nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] xref: FMA:54573 xref: SCTID:362467005 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0009662 ! hindbrain nucleus [Term] id: UBERON:0011776 name: dorsal commissural nucleus of spinal cord def: "A continuous column of gray matter along the midline in the dorsal gray commissure that sends fibers to the hypogastric nerve." [PMID:758335] synonym: "spinal cord dorsal commissural nucleus" BROAD [MA:0001128] xref: EMAPA:37748 {source="MA:th"} xref: MA:0001128 xref: NLX:144463 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0014631 ! dorsal gray commissure of spinal cord property_value: taxon_notes "The DCN may be species-specific and related to the system of short adrenergic neurons present in the pelvis." xsd:string [Term] id: UBERON:0011777 name: nucleus of spinal cord def: "A neural nucleus that is part of the spinal cord." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "spinal cord nucleus" EXACT [FMA:77011] xref: FMA:77011 is_a: UBERON:0000125 ! neural nucleus relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0011778 name: motor nucleus of vagal nerve synonym: "motor nucleus of X" EXACT [ZFA:0000387] synonym: "motor nucleus X" EXACT [ZFA:0000387] synonym: "nucleus motorius of nervi vagi" EXACT OMO:0003011 [ZFA:0000387] synonym: "nX" BROAD [ZFA:0000387] synonym: "vagal lobe" RELATED [ZFA:0000387] xref: ZFA:0000387 is_a: UBERON:0011775 ! vagus nerve nucleus property_value: curator_notes "in ZFA this is the superclass of dorsolateral and medial (which have not been generalized above ZFA). In this ontology it is a broad grouping class covering these zebrafish structures as well as the generalized dorsal motor nucleus" xsd:string [Term] id: UBERON:0011779 name: nerve of head region def: "A nerve that is part of a head." [OBOL:automatic] subset: grouping_class synonym: "cephalic nerve" RELATED [] synonym: "head nerve" RELATED [] is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0011782 name: feather follicle def: "A small tubular invagination of the skin with a fleshy dermal papilla at the bottom from which the feather grows. The papilla is inserted in the opening at the end of the quill[TMD]. Forms by invagination of cylinder of epidermal tissue at base of feather bud." [http://medical-dictionary.thefreedictionary.com/feather+follicle, http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "feather bud" RELATED [BTO:0003570] xref: BTO:0003570 xref: SCTID:68922000 is_a: UBERON:0036150 ! skin appendage follicle relationship: develops_from UBERON:0011783 ! feather follicle placode property_value: structure_notes "The follicle consists of a series of tissue layers (from peripheral to central), including the dermis of the follicle, the epidermis of the follicle (outer epidermal layer), the follicle cavity or lumen (the space between epidermal layers), the follicle (epidermal) collar (or inner epidermal layer), and the dermal pulp (tissue at the center of the follicle). The proliferation of feather keratinocytes and most of the growth of the feather occurs in the follicle, or epidermal, collar (From: Prum 1999)." xsd:string [Term] id: UBERON:0011783 name: feather follicle placode def: "An epidermal thickening above a condensation of dermal cells that will give rise to a feather follicle." [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "feather bud primordium" EXACT [PMID:16172986] synonym: "feather placode" EXACT [] synonym: "feather primordium" EXACT [] xref: http://people.eku.edu/ritchisong/554images/Feather_follicle_development)v3.jpg is_a: UBERON:0011817 ! skin appendage placode relationship: part_of UBERON:0001003 ! skin epidermis [Term] id: UBERON:0011784 name: feather shaft def: "The combination of the rachis and the calamus." [https://en.wikivet.net/Feather_-_Anatomy_%26_Physiology] synonym: "feather shaft" EXACT [] synonym: "shaft of feather" EXACT [] synonym: "stem of feather" EXACT [] xref: SCTID:66810005 is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0011785 name: ramus of feather barb synonym: "barb ramus" RELATED [] synonym: "main shaft of feather barb" EXACT [] is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0008294 ! feather barb [Term] id: UBERON:0011786 name: ramus of feather barbule synonym: "barb ramus" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "main shaft of feather barbule" EXACT [] is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0008295 ! feather barbule [Term] id: UBERON:0011792 name: feather muscle def: "Similar to erector pili muscles of mammals; attached to the sides of the follicle; capable of elevating or lowering entire groups of feathers." [http://medical-dictionary.thefreedictionary.com/feather+follicle] is_a: UBERON:0004253 ! skin muscle [Term] id: UBERON:0011793 name: flight feather synonym: "contour feather" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] xref: Wikipedia:Flight_feather is_a: UBERON:0008297 ! pennaceous feather [Term] id: UBERON:0011794 name: rectrix feather def: "A flight feather that lies along a single horizontal row on the rear margin of the anatomical tail. Only the central pair are attached (via ligaments) to the tail bones; the remaining rectrices are embedded into the rectricial bulbs, complex structures of fat and muscle that surround those bones. Rectrices are always paired, with a vast majority of species having six pairs. They are absent in grebes and some ratites, and greatly reduced in size in penguins." [Wikipedia:Flight_feather#Rectrices] synonym: "rectrices" EXACT OMO:0003004 [] synonym: "rectrix" EXACT [] synonym: "retrices" EXACT OMO:0003004 [] synonym: "retrix" EXACT [] synonym: "retrix feather" EXACT [] xref: Wikipedia:Flight_feather#Rectrices is_a: UBERON:0011793 ! flight feather is_a: UBERON:0018537 ! tail feather [Term] id: UBERON:0011795 name: remex feather def: "A flight feather located on the posterior side of the wing." [Wikipedia:Flight_feather#Remiges] synonym: "remex" BROAD [] synonym: "remiges" EXACT OMO:0003004 [] xref: Wikipedia:Flight_feather#Remiges is_a: UBERON:0011793 ! flight feather is_a: UBERON:0018536 ! wing feather [Term] id: UBERON:0011796 name: primary remex feather def: "A remex feather that is connected to the manus." [Wikipedia:Flight_feather#Primaries] synonym: "primary flight feather" EXACT [] synonym: "primary remex" EXACT [] synonym: "primary remiges" EXACT OMO:0003004 [] xref: Wikipedia:Flight_feather#Primaries is_a: UBERON:0011795 ! remex feather property_value: function_notes "these are the longest and narrowest of the remiges (particularly those attached to the phalanges), and they can be individually rotated. These feathers are especially important for flapping flight, as they are the principal source of thrust, moving the bird forward through the air. Most thrust is generated on the downstroke of flapping flight. However, on the upstroke (when the bird often draws its wing in close to its body), the primaries are separated and rotated, reducing air resistance while still helping to provide some thrust" xsd:string [Term] id: UBERON:0011797 name: secondary remex feather def: "A remex feather that is connected to the ulna." [Wikipedia:Flight_feather#Secondaries] synonym: "secondary flight feather" EXACT [] synonym: "secondary remex" EXACT [] synonym: "secondary remiges" EXACT OMO:0003004 [] xref: Wikipedia:Flight_feather#Secondaries is_a: UBERON:0011795 ! remex feather property_value: taxon_notes "In some species, the ligaments that bind these remiges to the bone connect to small, rounded projections, known as quill knobs, on the ulna; in other species, no such knobs exist. Secondary feathers remain close together in flight (they cannot be individually separated like the primaries can) and help to provide lift by creating the airfoil shape of the bird's wing. Secondaries tend to be shorter and broader than primaries, with blunter ends" xsd:string [Term] id: UBERON:0011798 name: tertial remex feather def: "A remex feather that is connected to the humerus." [Wikipedia:Flight_feather#Tertials] comment: tertials are connected to the humerus in some species. These elongated "true" tertials act as a protective cover for all or part of the folded primaries and secondaries, and do not qualify as flight feathers as such. However, many authorities use the term tertials to refer to the shorter, more symmetrical innermost secondaries of passerines (which perform the same function as true tertials) in an effort to distinguish them from the other secondaries. synonym: "tertial flight feather" EXACT [] synonym: "tertial remex" EXACT [] synonym: "tertial remiges" EXACT OMO:0003004 [] synonym: "tertiary flight feather" EXACT [] synonym: "tertiary remex" EXACT [] synonym: "tertiary remiges" EXACT OMO:0003004 [] synonym: "true tertial" EXACT [] xref: Wikipedia:Flight_feather#Tertials is_a: UBERON:0011795 ! remex feather [Term] id: UBERON:0011799 name: cavity of feather shaft def: "An anatomical cavity that is part of a feather shaft." [OBOL:automatic] is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0011800 name: dermal pulp of feather shaft def: "A tissue that is part of a cavity of feather shaft." [OBOL:automatic] is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0011803 ! feather bud, dermal component relationship: part_of UBERON:0011784 ! feather shaft [Term] id: UBERON:0011801 name: dermal condensation of feather follicle def: "A suprabasal cell population which together with the feather follicle placode develops into the feather follicle." [http://people.eku.edu/ritchisong/feather_evolution.htm] is_a: UBERON:0011585 ! cell condensation relationship: part_of UBERON:0002067 ! dermis property_value: taxon_notes "The development of placodes where dermal condensations occur, an evolutionary novelty, required changes in gene expression and timing. However, such changes are known to be an important mechanism in the origin of morphological innovations in many other organisms (True and Carroll 2002, Prum 2005)" xsd:string [Term] id: UBERON:0011802 name: feather bud synonym: "elongate feather bud" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "feather papilla" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] is_a: UBERON:0005423 ! developing anatomical structure property_value: seeAlso "http://people.eku.edu/ritchisong/feather_evolution.htm" xsd:anyURI [Term] id: UBERON:0011803 name: feather bud, dermal component def: "The part of the feather bud formed by a proliferation of dermal cells." [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "dermal core of feather papilla" EXACT [] synonym: "dermal papilla" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "dermal papilla of feather bud" EXACT [] synonym: "dermal papilla of feather papilla" EXACT [] is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0011801 ! dermal condensation of feather follicle relationship: part_of UBERON:0011802 ! feather bud [Term] id: UBERON:0011804 name: feather bud, epidermal component def: "An epithelial bud that is part of a feather bud." [OBOL:automatic] synonym: "feather bud epithelium" EXACT [] synonym: "feather germ" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] is_a: UBERON:0005153 ! epithelial bud relationship: develops_from UBERON:0011783 ! feather follicle placode relationship: part_of UBERON:0011802 ! feather bud [Term] id: UBERON:0011805 name: cavity of feather follicle is_a: UBERON:0002553 ! anatomical cavity property_value: seeAlso "http://people.eku.edu/ritchisong/feather_evolution.htm" xsd:anyURI [Term] id: UBERON:0011806 name: dermis of feather follicle def: "A tissue that is part of a dermis and is part of a feather follicle." [OBOL:automatic] is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0011804 ! feather bud, epidermal component relationship: part_of UBERON:0002067 ! dermis relationship: part_of UBERON:0011782 ! feather follicle [Term] id: UBERON:0011807 name: epidermis of feather follicle def: "A tissue that is part of a epidermis and is part of a feather follicle." [OBOL:automatic] is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0011804 ! feather bud, epidermal component relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0011782 ! feather follicle [Term] id: UBERON:0011808 name: outer epidermal layer of feather follicle is_a: UBERON:0011807 ! epidermis of feather follicle [Term] id: UBERON:0011809 name: inner epidermal layer of feather follicle synonym: "epidermal collar" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "epidermal collar of feather follicle" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "follicle collar" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "follicle collar of feather follicle" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] is_a: UBERON:0011807 ! epidermis of feather follicle property_value: development_notes "The proliferation of feather keratinocytes and most of the growth of the feather occurs here" xsd:string [Term] id: UBERON:0011810 name: collection of feathers def: "An anatomical cluster that consists of feathers." [OBOL:automatic] synonym: "feather coat" EXACT [] synonym: "plumage" EXACT [] is_a: UBERON:0034925 ! anatomical collection [Term] id: UBERON:0011814 name: non-neurogenic ectodermal placode def: "Ectodermal placode that does not develop into a component of the nervous system." [http://orcid.org/0000-0002-6601-2165, PMID:11523831] is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode [Term] id: UBERON:0011817 name: skin appendage placode def: "An ectodermal placode that gives rise to any of the cutaneous appendages that protrude from the skin epidermis (heair, feathers, epidermal scales)." [https://github.com/obophenotype/uberon/issues/1266] synonym: "cutaneous appendage follicle placode" EXACT [] synonym: "skin follicle placode" EXACT [] is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode [Term] id: UBERON:0011818 name: superficial fascia def: "Superficial fascia is found in the subcutis in most regions of the body, blending with the reticular layer of the dermis. It is present on the face, over the upper portion of the sternocleidomastoid, at the nape of the neck, and overlying the sternum. It is comprised mainly of loose areolar connective tissue and adipose and is the layer that primarily determines the shape of a body. In addition to its subcutaneous presence, this type of fascia surrounds organs and glands, neurovascular bundles, and is found at many other locations where it fills otherwise unoccupied space. It serves as a storage medium of fat and water; as a passageway for lymph, nerve and blood vessels; and as a protective padding to cushion and insulate. Superficial fascia is present, but does not contain fat, in the eyelids, ear, scrotum, penis and clitoris." [Wikipedia:Superficial_fascia] subset: pheno_slim synonym: "subcutaneous tissue" EXACT [FMA:9630] synonym: "superficial fascial layer" EXACT [] synonym: "tela subcutanea" EXACT OMO:0003011 [FMA:TA] xref: BTO:0004525 xref: FMA:9630 xref: GAID:929 xref: MESH:D040521 xref: NCIT:C33660 xref: SCTID:361713003 xref: Wikipedia:Superficial_fascia is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002199 {source="FMA"} ! integument property_value: external_ontology_notes "we follow FMA, BTO, NCIT and WP in making this a distinct class from hypodermis." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011819 name: lumen of atrioventricular canal def: "A tube lumen that is part of a atrioventricular canal." [OBOL:automatic] synonym: "AVC lumen" EXACT [] synonym: "cavity of atrioventricular canal" EXACT [] synonym: "lumen of AVC" EXACT [] xref: EHDAA2:0000152 is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen relationship: part_of UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0011820 name: atrioventricular region def: "An anatomical junction that divides and overlaps with and atrium and a ventricle in the heart." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "atrial ventricular junction" RELATED [GO:0003294] synonym: "atrioventricular junction" RELATED [FMA:85125, GO:0003294] synonym: "atrioventricular segment" RELATED [PMID:21234997] synonym: "AV region" RELATED [PMID:21234997] synonym: "AV segment" RELATED [PMID:21234997] xref: EHDAA2:0004149 xref: FMA:85125 is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0000948 ! heart relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011821 name: irregular connective tissue def: "Connective tissue, which consists of a population of connective tissue cells, the intercellular matrix of which contains an irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, mucoid tissue, connective tissue of peritoneum, connective tissue of fibrous pericardium." [FMA:20107] xref: FMA:20107 is_a: UBERON:0002384 {source="FMA"} ! connective tissue [Term] id: UBERON:0011822 name: dense irregular connective tissue def: "Irregular connective tissue is an irregular connective tissue, the intercellular matrix of which contains a dense irregular network of collagen and elastic fiber bundles. Examples: connective tissue of peritoneum, connective tissue of fibrous pericardium." [FMA:20109, Wikipedia:Dense_irregular_connective_tissue] synonym: "irregular dense connective tissue" EXACT [] synonym: "typus irregularis (textus connectivus collagenosus compactus)" EXACT [FMA:20109] xref: FMA:20109 xref: NCIT:C32882 xref: UMLS:C0738366 {source="ncithesaurus:Irregular_Dense_Connective_Tissue"} xref: Wikipedia:Dense_irregular_connective_tissue is_a: UBERON:0011821 {source="FMA"} ! irregular connective tissue is_a: UBERON:0011823 ! dense connective tissue property_value: external_definition "Tissue characterized by a thick, random arrangement of collagen and elastin fibers with very few cells. The majority of the cells are fibroblasts, but mast cells and macrophages may also be seen. It is found in the dermis, periosteum, perichondrium, capsules of organs and sheaths of nerves and muscles[NCIT]" xsd:string {date_retrieved="2012-08-29", external_class="ncithesaurus:Irregular_Dense_Connective_Tissue", ontology="NCIT"} [Term] id: UBERON:0011823 name: dense connective tissue def: "Dense connective tissue is mainly composed of collagen type I. Crowded between the collagen fibers are rows of fibroblasts, fiber-forming cells, that manufacture the fibers. Dense connective tissue forms strong, rope-like structures such as tendons and ligaments. Tendons attach skeletal muscles to bones; ligaments connect bones to bones at joints. Ligaments are more stretchy and contain more elastic fibers than tendons. Dense connective tissue also make up the lower layers of the skin (dermis), where it is arranged in sheets." [Wikipedia:Dense_connective_tissue] xref: AAO:0000121 xref: NCIT:C32450 xref: UMLS:C1511770 {source="ncithesaurus:Dense_Connective_Tissue"} xref: Wikipedia:Dense_connective_tissue is_a: UBERON:0002384 ! connective tissue property_value: editor_note "our OWL definition states that this is differentiated from other connective tissue types by virtue of the fact that the collage fiber component predominates, as opposed to cells and fluid." xsd:string property_value: external_definition "Connective tissue in which the fibrous component predominates. The cells, ground substance, and tissue fluid represent a minor component[NCIT]" xsd:string {date_retrieved="2012-08-29", external_class="ncithesaurus:Dense_Connective_Tissue", ontology="NCIT"} [Term] id: UBERON:0011824 name: fibrous connective tissue xref: FMA:75634 xref: SCTID:363130003 is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue [Term] id: UBERON:0011825 name: loose connective tissue def: "Irregular connective tissue, the intercellular matrix of which contains a sparse irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, neuroglial tissue, mucoid tissue." [FMA:19783] synonym: "textus connectivus collagenosus laxus" EXACT OMO:0003011 [FMA:19783, FMA:TA] synonym: "textus connectivus laxus" EXACT OMO:0003011 [FMA:19783, FMA:TA] xref: FMA:19783 xref: NCIT:C33007 xref: UMLS:C1253917 {source="ncithesaurus:Loose_Connective_Tissue"} xref: Wikipedia:Loose_connective_tissue is_a: UBERON:0011821 {source="FMA"} ! irregular connective tissue [Term] id: UBERON:0011826 name: vestibular gland def: "Lobular organ the parenchyma of which consists of glandular acini which communicate with the vestibule of vagina. Examples: right vestibular gland, lesser vestibular gland." [FMA:20020, Wikipedia:Vestibular_glands] subset: grouping_class xref: FMA:20020 xref: Wikipedia:Vestibular_glands is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0000997 ! mammalian vulva [Term] id: UBERON:0011827 name: areolar gland def: "A sebaceous glands in the areola surrounding the nipple." [Wikipedia:Areolar_glands] synonym: "accessory gland of breast" EXACT [FMA:58090] synonym: "accessory gland of Montgomery" EXACT [FMA:58090] synonym: "gland of Montgomery" EXACT [] synonym: "mammary gland sebaceous gland" RELATED [MA:0000794] synonym: "Montgomery's gland" EXACT [] xref: EMAPA:37668 {source="MA:th"} xref: FMA:58090 xref: MA:0000794 xref: NCIT:C92833 xref: SCTID:279034002 xref: UMLS:C0929386 {source="ncithesaurus:Montgomery_s_Tubercle"} xref: Wikipedia:Areolar_glands is_a: UBERON:0001821 ! sebaceous gland relationship: part_of UBERON:0002032 ! areola property_value: external_definition "Lobular organ the parenchyma of which consists of acini connected to the surface of the areola or to a lactiferous duct by the duct of areolar gland. Examples: There are variable numbers of areolar glands[FMA:58090]." xsd:string {source="FMA:58090"} property_value: seeAlso "https://sourceforge.net/p/obo/mouse-anatomy-requests/80/" xsd:anyURI [Term] id: UBERON:0011828 name: areolar tubercle synonym: "Montgomery tubercle" EXACT [] synonym: "Montgomery's tubercle" EXACT [] synonym: "tubercle of Montgomery" EXACT [] xref: FMA:58091 is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0002030 ! nipple property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI [Term] id: UBERON:0011830 name: duct of lesser vestibular gland def: "A duct that is part of a minor vestibular gland." [OBOL:automatic] synonym: "lesser vestibular gland duct" EXACT [FMA:20094] xref: FMA:20094 is_a: UBERON:0010146 ! paraurethral duct is_a: UBERON:0011831 ! duct of vestibular gland relationship: part_of UBERON:0000461 ! minor vestibular gland [Term] id: UBERON:0011831 name: duct of vestibular gland def: "A duct that is part of a vestibular gland." [OBOL:automatic] synonym: "vestibular gland duct" EXACT [FMA:20097] xref: FMA:20097 is_a: UBERON:0000058 ! duct is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0011826 ! vestibular gland [Term] id: UBERON:0011844 name: duct of areolar gland synonym: "areolar gland duct" EXACT [FMA:67744] xref: FMA:67744 is_a: UBERON:0001765 ! mammary duct is_a: UBERON:0011845 ! duct of sebaceous gland relationship: part_of UBERON:0011827 ! areolar gland [Term] id: UBERON:0011845 name: duct of sebaceous gland def: "A duct that is part of a sebaceous gland." [OBOL:automatic] synonym: "sebaceous gland duct" EXACT [FMA:70947] xref: FMA:70947 xref: NCIT:C33520 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001821 ! sebaceous gland [Term] id: UBERON:0011846 name: acinus of sebaceous gland def: "An acinus that is part of a sebaceous gland." [OBOL:automatic] synonym: "sebaceous gland acinus" EXACT [FMA:59657] xref: FMA:59657 is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0001821 ! sebaceous gland [Term] id: UBERON:0011847 name: acinus of parotid gland def: "An acinus that is part of a parotid gland." [OBOL:automatic] subset: human_reference_atlas subset: pheno_slim synonym: "parotid gland acinus" EXACT [FMA:59863] xref: EMAPA:37933 {source="MA:th"} xref: FMA:59863 xref: SCTID:46926004 is_a: UBERON:0011850 ! acinus of salivary gland is_a: UBERON:0013232 ! serous acinus relationship: part_of UBERON:0001831 ! parotid gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011850 name: acinus of salivary gland def: "An acinus that is part of a salivary gland." [OBOL:automatic] synonym: "salivary gland acinus" EXACT [FMA:59870] xref: FMA:59870 is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0001044 ! saliva-secreting gland [Term] id: UBERON:0011854 name: acinus of areolar gland def: "An acinus that is part of a areolar gland." [OBOL:automatic] synonym: "areolar gland acinus" EXACT [FMA:62081] xref: FMA:62081 is_a: UBERON:0011846 ! acinus of sebaceous gland is_a: UBERON:0011856 ! acinus of lactiferous gland relationship: part_of UBERON:0011827 ! areolar gland [Term] id: UBERON:0011856 name: acinus of lactiferous gland def: "An acinus that is part of a mammary gland." [OBOL:automatic] synonym: "lactiferous gland acinus" EXACT [FMA:74438] xref: FMA:74438 is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0001912 ! lobule of mammary gland [Term] id: UBERON:0011857 name: acinus of lacrimal gland def: "An acinus that is part of a lacrimal gland." [OBOL:automatic] synonym: "lacrimal gland acinus" EXACT [FMA:85250] xref: FMA:85250 is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0001817 ! lacrimal gland [Term] id: UBERON:0011858 name: acinus of exocrine gland def: "An acinus that is part of a exocrine gland." [OBOL:automatic] synonym: "exocrine gland acinus" EXACT [] is_a: UBERON:0009842 ! glandular acinus relationship: part_of UBERON:0002365 ! exocrine gland [Term] id: UBERON:0011859 name: internal acoustic meatus def: "The internal auditory meatus (also internal acoustic meatus, internal auditory canal, and internal acoustic canal) is a canal in the petrous bone of the temporal bone of the skull that carries nerves from inside the cranium towards the middle and inner ear compartments namely cranial nerve VII and cranial nerve VIII." [Wikipedia:Internal_auditory_meatus] comment: Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908] subset: pheno_slim synonym: "internal acoustic canal" RELATED [Wikipedia:Internal_auditory_meatus] synonym: "internal acoustic meatus" RELATED [Wikipedia:Internal_auditory_meatus] synonym: "internal auditory canal" RELATED [Wikipedia:Internal_auditory_meatus] synonym: "internal auditory meatus" RELATED [Wikipedia:Internal_auditory_meatus] synonym: "porus acusticus internus" RELATED [Wikipedia:Internal_auditory_meatus] xref: FMA:53163 xref: NCIT:C95443 xref: SCTID:264484004 xref: UMLS:C0149591 {source="ncithesaurus:Internal_Auditory_Canal_of_Ear"} xref: Wikipedia:Internal_auditory_meatus is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0001846 {source="MP"} ! internal ear [Term] id: UBERON:0011860 name: collection of collagen fibrils xref: FMA:63212 xref: MESH:D024022 xref: NCIT:C32339 xref: NIF_Subcellular:sao7547390221 is_a: UBERON:0000476 {source="ZFA"} ! acellular anatomical structure relationship: seeAlso UBERON:0007377 ! stratum compactum of dermis property_value: external_ontology_notes "the FMA class specifically refers to ureter" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011861 name: aorta collagen fibril def: "The connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011640] subset: pheno_slim is_a: UBERON:0011860 ! collection of collagen fibrils relationship: part_of UBERON:0004664 ! aorta tunica adventitia [Term] id: UBERON:0011862 name: pulmonary collagen fibril def: "The connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011641] subset: pheno_slim is_a: UBERON:0011860 ! collection of collagen fibrils relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0011863 name: bone collagen fibril def: "The connective tissue bundles in the extracellular matrix of bone tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011642] subset: pheno_slim is_a: UBERON:0011860 ! collection of collagen fibrils relationship: part_of UBERON:0001474 ! bone element [Term] id: UBERON:0011864 name: tendon collagen fibril def: "The connective tissue bundles in the extracellular matrix of tendon tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011643] subset: pheno_slim is_a: UBERON:0011860 ! collection of collagen fibrils relationship: part_of UBERON:0000043 ! tendon [Term] id: UBERON:0011865 name: corneal stroma collagen fibril def: "The connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011650] subset: pheno_slim is_a: UBERON:0011860 ! collection of collagen fibrils relationship: part_of UBERON:0001777 ! substantia propria of cornea [Term] id: UBERON:0011866 name: condylar joint def: "In a condyloid joint (condyloid articulation, ellipsoidal joint) an ovoid articular surface, or condyle, is received into an elliptical cavity. This permits movement in two planes, allowing flexion, extension, adduction, abduction, and circumduction." [Wikipedia:Condyloid_joint] synonym: "articulatio ellipsoidea" RELATED OMO:0003011 [Wikipedia:Condyloid_joint] synonym: "condylar joint" RELATED [Wikipedia:Condyloid_joint] synonym: "condyloid" RELATED [Wikipedia:Condyloid_joint] synonym: "condyloid articulation" RELATED [Wikipedia:Condyloid_joint] synonym: "condyloid joints" RELATED [Wikipedia:Condyloid_joint] synonym: "ellipsoidal joint" RELATED [Wikipedia:Condyloid_joint] xref: FMA:75300 xref: SCTID:335493003 xref: Wikipedia:Condyloid_joint is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0011867 name: extensor carpi radialis muscle synonym: "extensor carpi radialis" EXACT [] xref: EMAPA:36187 xref: SCTID:276166006 is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0011024 ! extrinsic extensor muscle of manus [Term] id: UBERON:0011868 name: midcarpal joint def: "An intercarpal that connects a proximal and distal carpal bone." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Midcarpal_joint] synonym: "articulatio mediocarpalis" EXACT OMO:0003011 [Wikipedia:Midcarpal_joint] synonym: "transverse carpal joint" EXACT [FMA:35293] xref: FMA:35293 xref: SCTID:361841009 xref: Wikipedia:Midcarpal_joint is_a: UBERON:0011132 ! intercarpal joint [Term] id: UBERON:0011869 name: pisiform joint def: "It is a joint between the pisiform and triquetrum." [Wikipedia:Pisiform_joint] comment: Wikipedia says pisiform and triquetral- todo check pisotriquetral synonym: "articulatio ossis pisiformis" EXACT OMO:0003011 [Wikipedia:Pisiform_joint] xref: FMA:73126 xref: Wikipedia:Pisiform_joint is_a: UBERON:0011132 ! intercarpal joint [Term] id: UBERON:0011870 name: pisotriquetral joint comment: See notes for pisiform xref: FMA:42318 is_a: UBERON:0011132 {source="FMA"} ! intercarpal joint [Term] id: UBERON:0011871 name: nasomaxillary suture def: "A cranial suture that connects a nasal bone and connects a maxilla." [OBOL:automatic] synonym: "articulation of the nasal bone with maxilla" RELATED [] synonym: "nasomaxillary suture of skull" EXACT [FMA:52960] xref: FMA:52960 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0011873 name: synarthrosis def: "A synarthrosis is a type of joint which permits very little or no movement under normal conditions. Most synarthrosis joints are fibrous. Suture joints and synchondroses are synarthroses." [Wikipedia:Synarthrosis] synonym: "synarthrodial" RELATED [Wikipedia:Synarthrosis] synonym: "synarthrodial joint" RELATED [Wikipedia:Synarthrosis] synonym: "synarthroses" RELATED [Wikipedia:Synarthrosis] xref: NCIT:C33716 xref: UMLS:C0699803 {source="ncithesaurus:Synarthrosis"} xref: Wikipedia:Synarthrosis is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0011874 name: amphiarthrosis def: "Amphiarthrosis is a type of continuous, slightly movable joint." [Wikipedia:Amphiarthrosis] synonym: "amphiarthrodial" RELATED [Wikipedia:Amphiarthrosis] synonym: "amphiarthroses" RELATED [Wikipedia:Amphiarthrosis] xref: FMA:76693 xref: NCIT:C32061 xref: UMLS:C0224520 {source="ncithesaurus:Amphiarthrosis"} xref: Wikipedia:Amphiarthrosis is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0011875 name: ligament of sternoclavicular joint def: "A skeletal ligament that is part of a sternoclavicular joint." [OBOL:automatic] synonym: "ligamentum sternoclavicularis" EXACT OMO:0003011 [] synonym: "sternoclavicular joint ligament" EXACT [FMA:63980] xref: FMA:63980 xref: SCTID:182386007 is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001469 ! sternoclavicular joint [Term] id: UBERON:0011876 name: body of tongue def: "The oral part of the tongue anterior to the terminal sulcus." [http://www.drugs.com/dict/body-of-tongue.html] subset: human_reference_atlas synonym: "corpus linguae" EXACT OMO:0003011 [http://www.drugs.com/dict/body-of-tongue.html] synonym: "tongue body" EXACT [FMA:54641] xref: FMA:54641 xref: SCTID:362090005 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 {source="FMA"} ! tongue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011877 name: margin of tongue def: "The lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.." [http://www.drugs.com/dict/margin-of-tongue.html] subset: human_reference_atlas synonym: "lateral border of tongue" EXACT [NCIT:C160983] synonym: "lateral surface of the tongue" EXACT [NCIT:C160983] synonym: "margo linguae" EXACT OMO:0003011 [http://www.drugs.com/dict/margin-of-tongue.html] synonym: "tongue margin" EXACT [FMA:54650] xref: FMA:54650 xref: SCTID:368572007 xref: SCTID:368594004 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001723 ! tongue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011878 name: muscle layer of esophagus def: "A muscle layer that is part of a wall of esophagus." [OBOL:automatic] synonym: "muscle coat of esophagus" EXACT [FMA:62998] synonym: "muscular coat of oesophagus" EXACT [FMA:62998] synonym: "muscular layer of oesophagus" EXACT [FMA:62998] synonym: "tela muscularis (oesophagus)" EXACT OMO:0003011 [FMA:62998, FMA:TA] synonym: "tunica muscularis esophagi" EXACT OMO:0003011 [] synonym: "tunica muscularis oesophageae" EXACT OMO:0003011 [FMA:TA] xref: FMA:62998 is_a: UBERON:0018261 ! muscular coat of digestive tract relationship: part_of UBERON:0001096 ! wall of esophagus property_value: structure_notes "In the upper esophagus, part of the externa is skeletal muscle, rather than smooth muscle" xsd:string {source="WP"} [Term] id: UBERON:0011879 name: mesorchium def: "The testes, at an early period of fetal life, are placed at the back part of the abdominal cavity, behind the peritoneum, and each is attached by a peritoneal fold, the mesorchium, to the mesonephros." [Wikipedia:Mesorchium] synonym: "testis mesentery" RELATED [EMAPA:17971] xref: AAO:0010530 xref: EMAPA:17971 xref: MA:0003238 xref: Wikipedia:Mesorchium is_a: UBERON:0000481 {source="AAO"} ! multi-tissue structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ [Term] id: UBERON:0011892 name: anterior uvea def: "Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris." [MP:0005194] subset: pheno_slim synonym: "anterior part of uveal tract" EXACT [] synonym: "anterior uveal tract" EXACT [] synonym: "anterior vascular layer of the eyeball" EXACT [] synonym: "anterior vascular tunic of the eye" EXACT [] synonym: "ciliary body and iris" RELATED [] synonym: "Haller tunica vascula" EXACT [MP:0005194] synonym: "tunica vasculosa bulbosa" EXACT [MP:0005194] synonym: "vasculosa oculi" RELATED [MP:0005194] synonym: "ventral uveal tract" EXACT [] xref: EMAPA:37417 {source="MA:th"} xref: SCTID:280656002 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001768 {source="MP"} ! uvea relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0011893 name: endoneurial fluid def: "Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord." [MGI:llw2, MP:0003633] subset: pheno_slim xref: EMAPA:37850 {source="MA:th"} is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland relationship: part_of UBERON:0000123 ! endoneurium [Term] id: UBERON:0011894 name: lumen of vagina def: "An organ cavity that is part of a vagina." [OBOL:automatic] synonym: "vaginal lumen" EXACT [FMA:19982] xref: FMA:19982 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0011895 name: endomysium def: "A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium." [Wikipedia:Endomysium] synonym: "fascia of muscle fiber" EXACT [FMA:9729] xref: BTO:0006241 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:9729 xref: NCIT:C32517 xref: SCTID:91739007 xref: UMLS:C0504097 {source="ncithesaurus:Endomysium"} xref: Wikipedia:Endomysium is_a: UBERON:0006804 ! reticular tissue relationship: part_of UBERON:0002385 ! muscle tissue [Term] id: UBERON:0011896 name: smooth muscle endomysium def: "Reticular tissue which surrounds a smooth muscle cell." [https://orcid.org/0000-0002-6601-2165] xref: FMA:260651 is_a: UBERON:0011895 ! endomysium relationship: part_of UBERON:0001135 ! smooth muscle tissue [Term] id: UBERON:0011897 name: cardiac endomysium def: "Reticular tissue which surrounds a cardiac myocyte." [FMA:83112] synonym: "endomysium of cardiac muscle cell" EXACT [FMA:83112] synonym: "fibrocollagenous sheath of cardiac muscle cell" EXACT [FMA:83112] xref: FMA:83112 is_a: UBERON:0011895 ! endomysium relationship: part_of UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0011898 name: skeletal muscle endomysium def: "Reticular tissue which surrounds a skeletal muscle cell." [FMA:86022] xref: FMA:86022 is_a: UBERON:0011895 ! endomysium relationship: part_of UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0011899 name: epimysium def: "Epimysium is a layer of connective tissue which ensheaths the entire muscle. It is composed of dense irregular connective tissue. It is continuous with fascia and other connective tissue wrappings of muscle including the endomysium, and perimysium. It is also continuous with tendons where it becomes thicker and collagenous." [Wikipedia:Epimysium] synonym: "epimysia" RELATED OMO:0003004 [Wikipedia:Epimysium] synonym: "fascia of muscle organ" EXACT [FMA:9726] xref: FMA:9726 xref: NCIT:C32527 xref: UMLS:C0504096 {source="ncithesaurus:Epimysium"} xref: Wikipedia:Epimysium is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0001134 {source="FMA"} ! skeletal muscle tissue property_value: function_notes "The Epimysium also protects muscles from friction against other muscles and bones" xsd:string [Term] id: UBERON:0011900 name: perimysium def: "The fibrous sheath enveloping each of the primary bundles of skeletal muscle fibers." [http://medical-dictionary.thefreedictionary.com/perimysium, Wikipedia:Perimysium] synonym: "fascia of muscle fasciculus" EXACT [FMA:9728] xref: FMA:9728 xref: NCIT:C33299 xref: SCTID:63406008 xref: UMLS:C0224087 {source="ncithesaurus:Perimysium"} xref: Wikipedia:Perimysium is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0001134 {source="FMA"} ! skeletal muscle tissue [Term] id: UBERON:0011901 name: hair matrix comment: The hair matrix surrounds the top and sides of the dermal papilla. The hair matrix cells give rise to 6 different types of cells that make up the different layers of the hair shaft and the inner root sheath. xref: FMA:70945 is_a: UBERON:0000021 ! cutaneous appendage relationship: part_of UBERON:0001037 {source="FMA"} ! strand of hair [Term] id: UBERON:0011903 name: gizzard smooth muscle def: "A smooth muscle tissue that is part of a gizzard." [OBOL:automatic] xref: BTO:0000521 is_a: UBERON:0004222 ! stomach smooth muscle relationship: part_of UBERON:0005052 ! gizzard [Term] id: UBERON:0011904 name: gastrolith def: "A rock held inside a gastrointestinal tract." [Wikipedia:Gastrolith] synonym: "gizzard stone" RELATED [Wikipedia:Gastrolith] synonym: "stomach stone" RELATED [Wikipedia:Gastrolith] xref: Wikipedia:Gastrolith is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0011905 name: plantaris def: "Plantaris is a vestigial structure and one of the superficial muscles of the posterior crural compartment of the leg. It is innervated by the tibial nerve (S1, S2) . It is composed of a thin muscle belly and a long thin tendon. It is approximately 2-4 inches long, and is absent in 7 - 10% of the human population. It is one of the plantar flexors in the superior compartment of the leg along with the gastrocnemius, and soleus. The plantaris is considered an unimportant muscle, it mainly acts with gastrocnemius[WP]." [Wikipedia:Plantaris_muscle] subset: efo_slim synonym: "musculus plantaris" EXACT OMO:0003011 [] synonym: "plantaris" EXACT [FMA:22543] xref: BTO:0006312 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0001979 xref: EMAPA:36254 xref: FMA:22543 xref: Wikipedia:Plantaris_muscle is_a: UBERON:0004256 ! hindlimb zeugopod muscle property_value: editor_note "todo - coordinate with phenoscape-ext on representation of amphibian plantaris longus and profundus" xsd:string [Term] id: UBERON:0011906 name: muscle head subset: upper_level synonym: "caput (musculus)" EXACT [FMA:85453] synonym: "caput musculi" EXACT [FMA:85453] synonym: "head of muscle organ" EXACT [FMA:85453] synonym: "muscular organ head" EXACT [FMA:85453] synonym: "proximal myotendinous region of muscle organ" RELATED [FMA:85453] xref: FMA:85453 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001630 ! muscle organ [Term] id: UBERON:0011907 name: gastrocnemius medialis def: "Missing definition for term UBERON:0011907. Please replace it using linked reference." [ISBN:0073040584] comment: Mammalian gastrocnemius medialis and flexor hallucis longus arise from reptilian gastrocnemius internus[Kardong] subset: human_reference_atlas synonym: "caput mediale (musculus gastrocnemius)" EXACT [FMA:45956] synonym: "caput mediale musculus gastrocnemii" EXACT OMO:0003011 [FMA:45956, FMA:TA] synonym: "medial head of gastrocnemius" EXACT [FMA:45956] synonym: "medial head of gastrocnemius muscle" EXACT [] xref: EMAPA:36250 xref: FMA:45956 xref: SCTID:213689008 is_a: UBERON:0011906 ! muscle head relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011908 name: gastrocnemius lateralis def: "Missing definition for term UBERON:0011908. Please replace it using linked reference." [ISBN:0073040584] comment: Mammalian gastrocnemius lateralis, soleus and plantaris arise from reptilian gastrocnemius externus[Kardong] subset: human_reference_atlas synonym: "caput laterale (musculus gastrocnemius)" EXACT [FMA:45959] synonym: "caput laterale musculus gastrocnemii" EXACT OMO:0003011 [FMA:45959, FMA:TA] synonym: "lateral head of gastrocnemius" EXACT [FMA:45959] synonym: "lateral head of gastrocnemius muscle" EXACT [] xref: EMAPA:36249 xref: FMA:45959 xref: SCTID:213588009 is_a: UBERON:0011906 ! muscle head relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011909 name: gastrocnemius internus def: "Missing definition for term UBERON:0011909. Please replace it using linked reference." [ISBN:0073040584] synonym: "M. gastrocnemius internus" EXACT [] synonym: "musculus gastrocnemius internus" EXACT [] is_a: UBERON:0004256 ! hindlimb zeugopod muscle [Term] id: UBERON:0011910 name: gastrocnemius externus def: "Missing definition for term UBERON:0011910. Please replace it using linked reference." [ISBN:0073040584] synonym: "M. gastrocnemius externus" EXACT [] synonym: "musculus gastrocnemius externus" EXACT [] is_a: UBERON:0004256 ! hindlimb zeugopod muscle [Term] id: UBERON:0011915 name: cerebellar glomerulus def: "An intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons." [ISBN:0838580343, MP:0004099] subset: pheno_slim synonym: "cerebellar glomeruli" EXACT OMO:0003004 [] xref: EMAPA:37812 {source="MA:th"} xref: NIF_Subcellular:nlx_subcell_20090502 is_a: UBERON:0001047 ! neural glomerulus relationship: part_of UBERON:0002956 ! granular layer of cerebellar cortex [Term] id: UBERON:0011917 name: thalamic glomerulus def: "Synaptic structure found in thalamic relay nuclei consising of a complex of afferent terminals, relay cell dendrites, interneuron dendrites and other processes. These complexes are surrounded by astrocytic processes." [NIF_Subcellular:nlx_subcell_20090504] synonym: "thalamic glomeruli" EXACT OMO:0003004 [] xref: NIF_Subcellular:nlx_subcell_20090504 is_a: UBERON:0001047 ! neural glomerulus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0011918 name: line of Schwalbe def: "The thickened peripheral margin of the vitreous membrane of the cornea." [MP:0006250] subset: pheno_slim synonym: "Schwalbe line" EXACT [FMA:58422] synonym: "Schwalbe's line" EXACT [FMA:58422] synonym: "Schwalbe's ring" EXACT [MP:0006250] xref: EMAPA:37895 {source="MA:th"} xref: FMA:58422 is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0000964 ! cornea relationship: part_of UBERON:0005969 {source="MP"} ! eye trabecular meshwork property_value: external_ontology_notes "A line in FMA, a structure in MP" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011919 name: yolk sac blood island def: "Masses of developing blood cells attached to endothelium in the yolk sac." [MP:0011204] subset: pheno_slim synonym: "visceral yolk sac blood island" EXACT [MP:0011204] synonym: "yolk sac blood islands" EXACT [EHDAA2:0000177] xref: EHDAA2:0000177 xref: EMAPA:16115 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0003061 ! blood island relationship: develops_from UBERON:0003316 {source="EHDAA2"} ! mesenchyme of yolk sac relationship: part_of UBERON:0003316 ! mesenchyme of yolk sac [Term] id: UBERON:0011921 name: connecting stalk blood islands synonym: "blood island of umbilical vesicle" EXACT [Wikipedia:Blood_island] synonym: "insula sanguinea vesiculae umbilicalis" EXACT [Wikipedia:Blood_island] xref: EHDAA2:0003242 is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle is_a: UBERON:0010303 ! extraembryonic epithelium is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0005667 {source="EHDAA2"} ! connecting stalk mesoderm relationship: part_of UBERON:0002331 {source="EHDAA2"} ! umbilical cord property_value: external_ontology_notes "in EHDAA2 gives rise to connecting stalk blood vessels and extraembryonic umbilical vessels" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0011922 name: cochlear basement membrane def: "The the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes." [MP:0004598] subset: pheno_slim synonym: "basement membrane of cochlear labyrinth" EXACT [] synonym: "cochlea basement membrane" EXACT [] xref: EMAPA:37830 {source="MA:th"} is_a: UBERON:0005769 ! basement membrane of epithelium relationship: part_of UBERON:0002499 ! cochlear labyrinth [Term] id: UBERON:0011924 name: postganglionic autonomic fiber def: "Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs." [MESH:A08.663.542.100, Wikipedia:Postganglionic_nerve_fibers] subset: human_reference_atlas synonym: "postganglionic autonomic fibre" RELATED [] synonym: "postganglionic nerve fiber" EXACT [FMA:5924] xref: FMA:5924 xref: MESH:D001338 xref: NCIT:C12648 xref: UMLS:C0004384 {source="ncithesaurus:Postganglionic_Autonomic_Fiber"} xref: Wikipedia:Postganglionic_nerve_fibers is_a: UBERON:0003041 ! trigeminal nerve fibers relationship: part_of UBERON:0034728 ! autonomic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011925 name: preganglionic autonomic fiber def: "Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released." [MESH:A08.663.542.122, Wikipedia:Preganglionic_nerve_fibers] subset: human_reference_atlas synonym: "preganglionic autonomic fibre" RELATED [] synonym: "preganglionic nerve fiber" EXACT [FMA:5923] xref: FMA:5923 xref: MESH:D001339 xref: NCIT:C12624 xref: Wikipedia:Preganglionic_nerve_fibers is_a: UBERON:0003041 ! trigeminal nerve fibers relationship: part_of UBERON:0034728 ! autonomic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011926 name: postganglionic sympathetic fiber def: "A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ." [MP:0008312] subset: human_reference_atlas synonym: "postganglionic sympathetic fiber" RELATED [MESH:A08.663.542.075.800] synonym: "sympathetic postganglionic fiber" RELATED [MP:0008312] xref: MESH:D017779 xref: NCIT:C12650 xref: SCTID:323617002 xref: UMLS:C0206254 {source="ncithesaurus:Postganglionic_Sympathetic_Fiber"} xref: Wikipedia:Postganglionic_fibers is_a: UBERON:0011924 ! postganglionic autonomic fiber relationship: part_of UBERON:0034729 ! sympathetic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011927 name: preganglionic sympathetic fiber def: "A cholinergic axonal fiber projecting from the CNS to a sympathetic ganglion." [MP:0008310] synonym: "sympathetic preganglionic fiber" RELATED [MP:0008310] xref: SCTID:323517007 is_a: UBERON:0011925 ! preganglionic autonomic fiber relationship: part_of UBERON:0034729 ! sympathetic nerve [Term] id: UBERON:0011929 name: postganglionic parasympathetic fiber def: "A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ." [MP:0008313] subset: human_reference_atlas synonym: "parasympathetic postganglionic fiber" RELATED [MP:0008313] xref: MESH:D017777 xref: NCIT:C12649 xref: UMLS:C0206252 {source="ncithesaurus:Postganglionic_Parasympathetic_Fiber"} xref: Wikipedia:Postganglionic_fibers is_a: UBERON:0011924 ! postganglionic autonomic fiber relationship: part_of UBERON:0004293 ! parasympathetic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011930 name: preganglionic parasympathetic fiber def: "A cholinergic axonal fibers projecting from the CNS to a parasympathetic ganglion." [MP:0008311] synonym: "parasympathetic preganglionic fiber" RELATED [MP:0008311] xref: Wikipedia:Preganglionic_fibers is_a: UBERON:0011925 ! preganglionic autonomic fiber relationship: part_of UBERON:0004293 ! parasympathetic nerve [Term] id: UBERON:0011931 name: nasal hair def: "Hair in the nose." [Wikipedia:Nasal_hair] subset: pheno_slim synonym: "hair of nose" EXACT [FMA:53670] synonym: "hair of vestibular part of nose" EXACT [FMA:53670] synonym: "nose hair" EXACT [FMA:53670] xref: FMA:53670 xref: SCTID:368885003 xref: Wikipedia:Nasal_hair is_a: UBERON:0010171 ! strand of hair of face relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0011932 name: pilosebaceous unit def: "An epidermal invagination that has as parts a hair follicle, a sebaceous gland, and arrector pili muscle." [ISBN:0123813611, PMCID:PMC3130146, Wikipedia:Pilosebaceous_unit] subset: pheno_slim synonym: "fabrica pilosebacea" EXACT [Wikipedia:Pilosebaceous_unit] synonym: "pilo-sebaceous apparatus" EXACT [FMA:70661] synonym: "pilo-sebaceous unit" EXACT [] synonym: "pilosebaceous apparatus" EXACT [] synonym: "pilosebaceous gland" RELATED [FMA:70661] xref: EMAPA:36582 xref: FMA:70661 xref: Wikipedia:Pilosebaceous_unit is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0006003 {source="ISBN:0123813611"} ! integumentary adnexa [Term] id: UBERON:0011933 name: vibrissa unit def: "A pilosebaceous unit that contains a strand of vibrissa hair (a specialized tactile hair) with the follicle incorporating a blood sinus, heavily innervated by sensory nerves." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "vibrissa" RELATED [MA:0000163] xref: EMAPA:17529 xref: MA:0000163 is_a: UBERON:0011932 ! pilosebaceous unit relationship: never_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "MA has distinct classes for vibrissa and vibrissa hair - the former includes the follicle and is thus not the hair proper. We model this as the 'vibrissa unit'" xsd:string {external_ontology="MA"} [Term] id: UBERON:0011936 name: vibrissa hair bulb def: "A bulb of hair follicle that is part of a vibrissa unit." [OBOL:automatic] synonym: "bulb of sinus hair" EXACT [EMAPA:26753] synonym: "bulb of vibrissa follicle" EXACT [] synonym: "vibrissa bulb" EXACT [EMAPA:26716] xref: EMAPA:26716 xref: MA:0000783 is_a: UBERON:0005932 ! bulb of hair follicle relationship: part_of UBERON:0010419 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! vibrissa follicle property_value: seeAlso "https://github.com/obophenotype/mouse-anatomy-ontology/issues/56" xsd:anyURI [Term] id: UBERON:0011937 name: vibrissa root sheath def: "A hair root sheath that is part of a vibrissa unit." [OBOL:automatic] synonym: "root sheath of sinus hair" EXACT [EMAPA:26765] synonym: "root sheath of vibrissa" EXACT [] synonym: "root sheath of vibrissa hair" EXACT [] xref: EMAPA:26724 xref: MA:0000784 is_a: UBERON:0005933 ! hair root sheath relationship: part_of UBERON:0011936 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! vibrissa hair bulb [Term] id: UBERON:0011938 name: vibrissa inner root sheath def: "A hair inner root sheath that is part of a vibrissa unit." [OBOL:automatic] xref: EMAPA:36477 xref: MA:0000785 is_a: UBERON:0005941 ! hair inner root sheath is_a: UBERON:0011937 ! vibrissa root sheath [Term] id: UBERON:0011939 name: vibrissa outer root sheath def: "A hair outer root sheath that is part of a vibrissa unit." [OBOL:automatic] xref: EMAPA:36478 xref: MA:0000786 is_a: UBERON:0005942 ! hair outer root sheath is_a: UBERON:0011937 ! vibrissa root sheath [Term] id: UBERON:0011940 name: arrector pili muscle of vibrissa def: "An arrector muscle of hair that is part of a vibrissa hair." [OBOL:automatic] synonym: "arrector pilorum muscle of vibrissa" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:26771 is_a: UBERON:0002033 ! arrector muscle of hair relationship: part_of UBERON:0006378 ! strand of vibrissa hair [Term] id: UBERON:0011941 name: lateral angle of scapula def: "An angle of the scapula that is broad and bears the glenoid cavity or fossa[WP,unvetted]." [Wikipedia:Lateral_angle_of_scapula] synonym: "angulus lateralis (scapula)" EXACT [FMA:23249] synonym: "angulus lateralis scapulae" EXACT OMO:0003011 [Wikipedia:Lateral_angle_of_scapula] synonym: "glenoid angle of scapula" RELATED [Wikipedia:Lateral_angle_of_scapula] synonym: "head of scapula" RELATED [Wikipedia:Lateral_angle_of_scapula] synonym: "scapular head" RELATED [FMA:23249] xref: FMA:23249 xref: Wikipedia:Lateral_angle_of_scapula is_a: UBERON:0007172 {source="EMAPA-modified"} ! angle of scapula [Term] id: UBERON:0011942 name: obsolete adult human is_obsolete: true [Term] id: UBERON:0011944 name: subintestinal vein subset: dubious_grouping synonym: "SIV" EXACT [ZFA:0005035] synonym: "vitelline vein" RELATED INCONSISTENT [ZFA:0005035] xref: TAO:0005035 xref: XAO:0004172 xref: ZFA:0005035 is_a: UBERON:0001638 {source="XAO"} ! vein [Term] id: UBERON:0011945 name: luminal layer of epithelium subset: human_reference_atlas is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0000483 ! epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011946 name: subluminal layer of epithelium is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0000483 ! epithelium [Term] id: UBERON:0011947 name: ureter luminal urothelium def: "A luminal layer of epithelium that is part of a ureter." [OBOL:automatic] subset: pheno_slim xref: EMAPA:37779 {source="MA:th"} xref: MA:0002656 is_a: UBERON:0011945 ! luminal layer of epithelium relationship: part_of UBERON:0001254 ! urothelium of ureter [Term] id: UBERON:0011948 name: ureter subluminal urothelium xref: EMAPA:37780 {source="MA:th"} xref: MA:0002657 is_a: UBERON:0011946 ! subluminal layer of epithelium relationship: part_of UBERON:0001254 ! urothelium of ureter [Term] id: UBERON:0011949 name: endometrium luminal epithelium def: "A luminal layer of epithelium that is part of a endometrium epithelium." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:35309 xref: MA:0002733 is_a: UBERON:0011945 ! luminal layer of epithelium relationship: part_of UBERON:0004811 ! endometrium epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011950 name: mammary gland luminal epithelium def: "The inner cell layer of the mammary epithelium bilayer that lines the luminal surface of mammary gland ducts and alveoli; luminal cells have only limited contact with the underlying basement membrane and surrounding connective tissue; they are secretory epithelial cells characterized by the expression of the receptors for systemic hormones, i.e. estrogens, progesterone and prolactin." [MGI:anna] synonym: "lumina layer of epithelium of lactiferous gland" EXACT [FMA:74458] xref: EMAPA:37902 {source="MA:th"} xref: FMA:74458 is_a: UBERON:0011945 ! luminal layer of epithelium relationship: part_of UBERON:0003244 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of mammary gland [Term] id: UBERON:0011951 name: prostate luminal epithelium def: "A luminal layer of epithelium that is part of a prostate gland." [OBOL:automatic] synonym: "subdivision of luminal layer of epithelium of prostatic gland" EXACT [FMA:74262] xref: FMA:74262 is_a: UBERON:0011945 ! luminal layer of epithelium relationship: part_of UBERON:0000428 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! prostate epithelium [Term] id: UBERON:0011952 name: non-glandular epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0011953 name: stomach glandular region def: "A region of the stomach that is lined with glandular epithelium." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "glandular stomach" RELATED [] xref: EMAPA:17623 xref: MA:0001613 xref: NCIT:C77661 xref: SCTID:27633001 xref: UMLS:C0227197 {source="ncithesaurus:Glandular_Stomach"} is_a: UBERON:0009870 ! zone of stomach property_value: editor_note "as currently defined, this would include the cardiac antrum; however, the intent may be to exclude the cardiac glands and in mice for this to be part of the region distal to the margo plicatus" xsd:string [Term] id: UBERON:0011954 name: stomach non-glandular region def: "A region of the stomach is lined with non-glandular epithelium. Examples of a stomach non-glandular region are found in rodents." [http://orcid.org/0000-0002-6601-2165] synonym: "stomach cutaneous region" RELATED [EMAPA:17627] synonym: "stomach ependymal region" RELATED [EMAPA:17627] xref: MA:0001625 xref: NCIT:C77662 is_a: UBERON:0009870 ! zone of stomach [Term] id: UBERON:0011955 name: left hepatic vein def: "A hepatic vein that is part of a left lobe of liver." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:37164 {source="MA:th"} xref: FMA:14339 xref: MA:0003032 xref: SCTID:55188000 is_a: UBERON:0001143 ! hepatic vein relationship: part_of UBERON:0001115 ! left lobe of liver relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011956 name: right hepatic vein def: "A hepatic vein that is part of a right lobe of liver." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:37377 {source="MA:th"} xref: FMA:14338 xref: MA:0003034 xref: SCTID:18135006 is_a: UBERON:0001143 ! hepatic vein relationship: part_of UBERON:0001114 ! right lobe of liver relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011957 name: middle hepatic vein subset: human_reference_atlas xref: EMAPA:37175 {source="MA:th"} xref: FMA:14340 xref: MA:0003033 xref: SCTID:54895000 is_a: UBERON:0001143 ! hepatic vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0011958 name: acetabular labrum def: "A ring of cartilage that surrounds the acetabulum[WP,unvetted]." [Wikipedia:Acetabular_labrum] synonym: "acetabular lip" RELATED [] synonym: "acetabular rim" RELATED INCONSISTENT [AAO:0000864] synonym: "cotyloid ligament" RELATED [Wikipedia:Acetabular_labrum] synonym: "glenoidal labrum of hip joint" RELATED [Wikipedia:Acetabular_labrum] synonym: "labrum acetabuli" EXACT OMO:0003011 [Wikipedia:Acetabular_labrum] synonym: "labrum of acetabulum" EXACT [FMA:43521] xref: AAO:0000864 xref: FMA:43521 xref: SCTID:182439007 xref: SCTID:263366005 xref: Wikipedia:Acetabular_labrum is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 {source="FMA"} ! cartilage element relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint property_value: external_definition "Cartilaginous ring that forms the entire acetabular margin[AAO:0000864]." xsd:string {notes="AAO class treated as equivalent to labrum based on this definition", source="AAO:0000864"} property_value: function_notes "Its function is to deepen the acetabulum, making it more difficult for the head of the femur to slip out of place (sublux)" xsd:string property_value: structure_notes "some sources treat this as fibrocartilage" xsd:string [Term] id: UBERON:0011959 name: glenoid labrum of scapula def: "A ring of fibrocartilage attached to the margin of the glenoid cavity of the scapula." [http://www.medilexicon.com/medicaldictionary.php?t=47475, Wikipedia:Glenoid_labrum] synonym: "glenoid labrum" BROAD [] synonym: "glenoidal labrum" BROAD [] synonym: "glenoidal labrum of glenohumeral joint" EXACT [] synonym: "glenoidal labrum of scapula" EXACT [] synonym: "labrum glenoidale" EXACT OMO:0003011 [] synonym: "labrum glenoidale scapulae" RELATED [http://www.medilexicon.com/medicaldictionary.php?t=47475] xref: FMA:23290 xref: SCTID:182391008 is_a: UBERON:0007844 {source="FMA"} ! cartilage element relationship: part_of UBERON:0001470 {source="FMA"} ! glenohumeral joint property_value: editor_note "consider classifying as 'annulus fibrosus'" xsd:string [Term] id: UBERON:0011960 name: articular capsule of glenohumeral joint def: "An articular capsule that is part of the glenohumeral joint." [http://orcid.org/0000-0002-6601-2165] synonym: "articular capsule of humerus" EXACT [Wikipedia:Articular_capsule_of_the_humerus] synonym: "articular capsule of shoulder joint" EXACT [] synonym: "capsule of shoulder joint" EXACT [FMA:34944] synonym: "fibrous capsule of glenohumeral joint" EXACT [FMA:34944] synonym: "glenohumeral joint capsule" RELATED [FMA:34944] xref: FMA:34944 xref: SCTID:361836001 xref: Wikipedia:Articular_capsule_of_the_humerus is_a: UBERON:0001484 ! articular capsule relationship: part_of UBERON:0001470 ! glenohumeral joint [Term] id: UBERON:0011961 name: articular capsule of hip joint def: "An articular capsule that is part of the hip joint." [http://orcid.org/0000-0002-6601-2165] synonym: "capsula articularis coxae" EXACT OMO:0003011 [Wikipedia:Capsule_of_hip_joint] synonym: "capsule of hip joint" EXACT [Wikipedia:Capsule_of_hip_joint] synonym: "fibrous capsule of hip joint" EXACT [FMA:42821] xref: FMA:42821 xref: SCTID:263382006 xref: Wikipedia:Capsule_of_hip_joint is_a: UBERON:0001484 ! articular capsule is_a: UBERON:0005179 ! pelvic region element relationship: part_of UBERON:0001486 ! hip joint [Term] id: UBERON:0011962 name: transverse tarsal joint def: "The transverse tarsal joint is formed by the articulation of the calcaneus with the cuboid, and the articulation of the talus with the navicular. The movement which takes place in this joint is more extensive than that in the other tarsal joints, and consists of a sort of rotation by means of which the foot may be slightly flexed or extended, the sole being at the same time carried medially (inverted) or laterally." [Wikipedia:Transverse_tarsal_joint] synonym: "articulatio tarsi transversa" EXACT [Wikipedia:Transverse_tarsal_joint] synonym: "chopart's joint" EXACT [FMA:35201] synonym: "midtarsal joint" EXACT [Wikipedia:Transverse_tarsal_joint] xref: FMA:35201 xref: NCIT:C102354 xref: SCTID:182220000 xref: Wikipedia:Transverse_tarsal_joint is_a: UBERON:0001487 ! pes joint [Term] id: UBERON:0011963 name: talocalcaneonavicular joint def: "The talocalcaneonavicular articulation is an arthrodial joint: the rounded head of the talus being received into the concavity formed by the posterior surface of the navicular, the anterior articular surface of the calcaneus, and the upper surface of the plantar calcaneonavicular ligament. There are two ligaments in this joint: the articular capsule and the dorsal talonavicular." [Wikipedia:Talocalcaneonavicular_articulation] synonym: "articulatio talocalcaneonavicularis" EXACT OMO:0003011 [Wikipedia:Talocalcaneonavicular_articulation] synonym: "talocalcaneonavicular articulation" EXACT [Wikipedia:Talocalcaneonavicular_articulation] xref: FMA:35204 xref: SCTID:182211009 xref: Wikipedia:Talocalcaneonavicular_articulation is_a: UBERON:0003698 ! subtalar joint relationship: part_of UBERON:0011962 {source="FMA-modified"} ! transverse tarsal joint [Term] id: UBERON:0011964 name: calcaneocuboid joint def: "Calcaneocuboid Articulation (articulation of the calcaneus with the cuboid). The ligaments connecting the calcaneus with the cuboid are five in number, viz. , the articular capsule, the dorsal calcaneocuboid, part of the bifurcated, the long plantar, and the plantar calcaneocuboid." [Wikipedia:Calcaneocuboid_articulation] synonym: "articulatio calcaneocubiodea" EXACT OMO:0003011 [FMA:35207] synonym: "calcaneocuboid articulation" EXACT [Wikipedia:Calcaneocuboid_articulation] synonym: "calcaneocuboidal joint" EXACT [] xref: FMA:35207 xref: SCTID:361866008 xref: Wikipedia:Calcaneocuboid_articulation is_a: UBERON:0011969 ! mesotarsal joint relationship: part_of UBERON:0011962 {source="FMA-modified"} ! transverse tarsal joint [Term] id: UBERON:0011965 name: saddle joint def: "In a saddle joint (sellar joint, articulation by reciprocal reception) the opposing surfaces are reciprocally concave-convex." [Wikipedia:Saddle_joint] synonym: "articulation by reciprocal reception" RELATED [Wikipedia:Saddle_joint] synonym: "sellar joint" EXACT [Wikipedia:Saddle_joint] xref: FMA:75298 xref: SCTID:23059003 xref: Wikipedia:Saddle_joint is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0011966 name: manubriosternal joint def: "The early union, by hyaline cartilage, of the manubrium and the body of the sternum, which later becomes a symphysial type of joint." [http://www.medilexicon.com/medicaldictionary.php?t=46395, Wikipedia:Sternal_angle] synonym: "angle of louis" RELATED [Wikipedia:Sternal_angle] synonym: "angulus ludovici" RELATED [Wikipedia:Sternal_angle] synonym: "angulus sternalis" RELATED [Wikipedia:Sternal_angle] synonym: "angulus sterni" RELATED [Wikipedia:Sternal_angle] synonym: "manubriosternal joint" RELATED [Wikipedia:Sternal_angle] synonym: "manubriosternal junction" RELATED [Wikipedia:Sternal_angle] synonym: "manubriosternal symphysis" EXACT [FMA:7502] synonym: "manubro-sterno junction" RELATED [Wikipedia:Sternal_angle] xref: FMA:7502 xref: SCTID:263312002 xref: Wikipedia:Sternal_angle is_a: UBERON:0002216 {source="FMA"} ! symphysis [Term] id: UBERON:0011967 name: costotransverse joint def: "The facet of the tubercle of the rib forms an articulation with the adjacent transverse process of a thoracic vertebra. This is a plane type synovial joint called the costotransverse joint. This articulation is present in all but the eleventh and twelfth ribs. Ribs 1 to 10 have two joints in close proximity posteriorly; the costovertebral joints and the costotranseverse joints. This arrangement restrains the motion of the ribs allowing them to work in a parallel fashion during breathing. If a typical rib had only one joint posteriorly the resultant swivel action would allow a rib to be non-parallel with respect to the neighboring ribs making for a very inefficient respiratory mechanism. The ventral rami innervate the costotransverse joints. Therefore, therapeutic medial branch blocks are ineffectual. The ligaments of the joint are: Articular capsule Posterior costotransverse Anterior costotransverse Ligament of the neck of the rib Ligament of the tubercle of the rib." [Wikipedia:Costotransverse_joint] synonym: "costotransverse articulation" RELATED [Wikipedia:Costotransverse_joint] xref: FMA:7952 xref: SCTID:263328007 xref: Wikipedia:Costotransverse_joint is_a: UBERON:0002292 {source="FMA"} ! costovertebral joint relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage [Term] id: UBERON:0011968 name: radio-carpal joint def: "A skeletal joint that connects a radius bone and connects a carpal skeleton." [OBOL:automatic] synonym: "articulatio radiocarpea" EXACT OMO:0003011 [Wikipedia:Wrist] synonym: "radiocarpal articulation" EXACT [Wikipedia:Wrist] synonym: "radiocarpal joint" EXACT [] synonym: "wrist joint" BROAD INCONSISTENT [FMA:35291] xref: EMAPA:19205 xref: FMA:35291 xref: MA:0000461 xref: SCTID:361839008 is_a: UBERON:0001491 {source="MA"} ! wrist joint [Term] id: UBERON:0011969 name: mesotarsal joint def: "An ankle joint that passes between the proximal and distal tarsals." [http://palaeos.com/vertebrates/glossary/glossaryM.html] comment: Calcaneus and astragalus are interlocked, line of flexion is distal to them[Kardong] is_a: UBERON:0001487 ! pes joint is_a: UBERON:0011980 ! crurotarsal joint relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0011970 name: talofibular ligament def: "A skeletal ligament that connects the fibula to the talus. Examples: anterior and posterior talofibular ligament." [http://orcid.org/0000-0002-6601-2165] synonym: "ligamentum talofibulare" EXACT OMO:0003011 [Wikipedia:Talofibular_ligament] synonym: "talo-fibular ligament" EXACT [] xref: FMA:44080 xref: SCTID:244649001 xref: Wikipedia:Talofibular_ligament is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001488 ! ankle joint property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg" xsd:anyURI [Term] id: UBERON:0011971 name: calcaneofibular ligament def: "A skeletal ligament that connects the fibula to the calcaneus." [Wikipedia:Calcaneofibular_ligament] synonym: "ligamentum calcaneofibulare" EXACT OMO:0003011 [Wikipedia:Calcaneofibular_ligament] xref: FMA:44089 xref: SCTID:244650001 xref: Wikipedia:Calcaneofibular_ligament is_a: UBERON:0003701 ! calcaneal tendon relationship: part_of UBERON:0001488 ! ankle joint property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg" xsd:anyURI property_value: taxon_notes "In humans, it is a narrow, rounded cord, running from the apex of the fibular malleolus downward and slightly backward to a tubercle on the lateral surface of the calcaneus. It is covered by the tendons of the Peronæi longus and brevis." xsd:string {source="WP,modified"} [Term] id: UBERON:0011972 name: medial ligament of ankle joint def: "A skeletal ligament that connects a tibia and connects a tarsal skeleton." [OBOL:automatic] synonym: "deltoid collateral ligament of ankle joint" EXACT [FMA:44055] synonym: "deltoid ligament of ankle joint" EXACT [FMA:44055] synonym: "ligamentum collaterale mediale (articulatio talocruralis)" EXACT [FMA:44055] synonym: "ligamentum collaterale mediale articulationis talocruralis" EXACT OMO:0003011 [FMA:44055, FMA:TA] synonym: "ligamentum deltoideum" EXACT [FMA:TA] synonym: "ligamentum deltoideum (articulatio talocruralis)" EXACT [FMA:44055] synonym: "medial collateral ligament of ankle joint" EXACT [FMA:44055] xref: FMA:44055 xref: SCTID:41159004 is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001488 ! ankle joint [Term] id: UBERON:0011973 name: epiphysis of phalanx of pes def: "An epiphysis that is part of a phalanx of a pes [Automatically generated definition]." [OBOL:automatic] synonym: "epiphysis of phalanx of toe" EXACT [] xref: SCTID:314621001 is_a: UBERON:0001437 ! epiphysis relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0011974 name: epiphysis of proximal phalanx of pes def: "An epiphysis that is part of a proximal phalanx of pes." [OBOL:automatic] synonym: "epiphysis of proximal phalanx of toe" EXACT [] xref: SCTID:280047006 is_a: UBERON:0004446 ! epiphysis of phalanx is_a: UBERON:0011973 ! epiphysis of phalanx of pes relationship: part_of UBERON:0003868 ! proximal phalanx of pes [Term] id: UBERON:0011975 name: epiphysis of middle phalanx of pes def: "An epiphysis that is part of a middle phalanx of pes." [OBOL:automatic] synonym: "epiphysis of middle phalanx of toe" EXACT [] xref: SCTID:280048001 is_a: UBERON:0004446 ! epiphysis of phalanx is_a: UBERON:0011973 ! epiphysis of phalanx of pes relationship: part_of UBERON:0003866 ! middle phalanx of pes [Term] id: UBERON:0011976 name: epiphysis of distal phalanx of pes def: "An epiphysis that is part of a distal phalanx of pes." [OBOL:automatic] synonym: "epiphysis of distal phalanx of toe" EXACT [] xref: SCTID:280049009 is_a: UBERON:0004446 ! epiphysis of phalanx is_a: UBERON:0011973 ! epiphysis of phalanx of pes relationship: part_of UBERON:0003867 ! distal phalanx of pes [Term] id: UBERON:0011977 name: epiphysis of proximal phalanx of manus def: "An epiphysis that is part of a proximal phalanx of manus." [OBOL:automatic] subset: pheno_slim synonym: "epiphysis of proximal phalanx of finger" EXACT [] xref: SCTID:280044004 is_a: UBERON:0004387 ! epiphysis of phalanx of manus relationship: part_of UBERON:0002234 ! proximal phalanx of manus [Term] id: UBERON:0011978 name: epiphysis of middle phalanx of manus def: "An epiphysis that is part of a middle phalanx of manus." [OBOL:automatic] synonym: "epiphysis of middle phalanx of finger" EXACT [] xref: SCTID:280045003 is_a: UBERON:0004387 ! epiphysis of phalanx of manus relationship: part_of UBERON:0003864 ! middle phalanx of manus [Term] id: UBERON:0011979 name: epiphysis of distal phalanx of manus def: "An epiphysis that is part of a distal phalanx of manus." [OBOL:automatic] synonym: "epiphysis of distal phalanx of finger" EXACT [] xref: FMA:321561 xref: SCTID:280046002 is_a: UBERON:0004387 ! epiphysis of phalanx of manus relationship: part_of UBERON:0003865 ! distal phalanx of manus [Term] id: UBERON:0011980 name: crurotarsal joint def: "A joint that connects the bones of the crus to the proximal tarsal bones." [Wikipedia:Crurotarsal] comment: line of flexion between calcaneus and astragalus synonym: "crurotarsal" RELATED [] xref: Wikipedia:Crurotarsal is_a: UBERON:0001488 ! ankle joint property_value: external_definition "an ankle joint that passes between the astragalus and calcaneum[Palaeos]." xsd:string {source="http://palaeos.com/vertebrates/glossary/glossaryCr.html#Crurotarsal%20joint"} [Term] id: UBERON:0011981 name: manual digit 6 comment: Found in Acanthostega synonym: "6th finger" EXACT [] synonym: "fore digit VI" EXACT [] synonym: "fore limb digit 6" EXACT [OBOL:accepted] synonym: "hand digit 6" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit VI" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "sixth finger" EXACT [] is_a: UBERON:0002389 ! manual digit is_a: UBERON:0016856 ! digit 6 relationship: part_of UBERON:5011981 ! manual digit 6 plus metapodial segment property_value: ray_number "6" xsd:nonNegativeInteger [Term] id: UBERON:0011982 name: manual digit 7 comment: Found in Acanthostega synonym: "fore digit VII" EXACT [] synonym: "fore limb digit 7" EXACT [OBOL:accepted] synonym: "hand digit 7" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit VII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "seventh finger" EXACT [] is_a: UBERON:0002389 ! manual digit is_a: UBERON:0016857 ! digit 7 relationship: part_of UBERON:5011982 ! manual digit 7 plus metapodial segment property_value: ray_number "7" xsd:nonNegativeInteger [Term] id: UBERON:0011983 name: manual digit 8 comment: Found in Acanthostega synonym: "eighth finger" EXACT [] synonym: "fore digit VIII" EXACT [] synonym: "fore limb digit 8" EXACT [OBOL:accepted] synonym: "hand digit 8" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit VIII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0002389 ! manual digit is_a: UBERON:0016858 ! digit 8 relationship: part_of UBERON:5011983 ! manual digit 8 plus metapodial segment property_value: ray_number "8" xsd:nonNegativeInteger [Term] id: UBERON:0011984 name: pedal digit 6 synonym: "digitus sextus pedis" EXACT OMO:0003011 [] synonym: "foot digit 6" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind digit 6" EXACT [] synonym: "hind digit VI" EXACT [] synonym: "hind limb digit 6" EXACT [OBOL:accepted] synonym: "pedal digit VI" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "pes digit VI" EXACT [] synonym: "sixth toe" EXACT [] synonym: "toe 6" EXACT [] is_a: UBERON:0001466 ! pedal digit relationship: part_of UBERON:5011984 ! pedal digit 6 plus metapodial segment property_value: ray_number "6" xsd:nonNegativeInteger [Term] id: UBERON:0011985 name: infraorbital sinus def: "An air-filled recess in the head of birds which lies lateral to the nasal cavity into which it opens." [http://medical-dictionary.thefreedictionary.com/infraorbital+sinus] synonym: "sinus infraorbitalis" EXACT OMO:0003011 [] is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0011986 name: mucosa of infraorbital sinus def: "A mucosa that adjacent_to a infraorbital sinus." [OBOL:automatic] synonym: "infraorbital sinus mucosa" EXACT [OBOL:automatic] is_a: UBERON:0005030 ! mucosa of paranasal sinus [Term] id: UBERON:0011996 name: pharyngeal adductor synonym: "adductors" RELATED OMO:0003004 [ZFA:0000463] xref: TAO:0000463 xref: ZFA:0000463 is_a: UBERON:0000933 {source="ZFA"} ! chordate pharyngeal muscle [Term] id: UBERON:0011997 name: coelom def: "The aggregate of the coelemic cavity lumen plus the membranes that line the lumen." [UBERON:cjm, Wikipedia:Body_cavity, Wikipedia:Coelom] synonym: "coelem" RELATED [] synonym: "coelomic cavity" RELATED [EHDAA2:0004731] synonym: "enterocoelom" NARROW [NCBITaxon:33511] synonym: "haemocoelom" NARROW [] synonym: "schizocoelom" NARROW [] xref: EHDAA2:0004731 xref: Wikipedia:Coelom xref: ZFA:0001438 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} property_value: editor_note "EHDAA2 distingsuishes between the lumen, the lining, and the 'coelomic cavity', which despire it's name, is not a space - it is the aggregate of space plus lining." xsd:string property_value: has_relational_adjective "coelomic" xsd:string [Term] id: UBERON:0012054 name: myocoele def: "The cavity within a myotome." [http://medical-dictionary.thefreedictionary.com/myocoele] xref: EMAPA:31134 xref: VHOG:0001283 is_a: UBERON:0002553 ! anatomical cavity property_value: homology_notes "The central cavity within the mesoderm is the paired primary or embryonic coelom. Parts of the embryonic coelom often become enclosed in the mesoderm, forming a myocoel within the epimere, a nephrocoel within the mesomere, and simple coelom (body cavity) within the lateral plate mesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001283", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.166 and Figure 5.6", source="http://bgee.unil.ch/"} [Term] id: UBERON:0012055 name: left lung lower lobe bronchiole def: "A bronchiole that is part of a lower lobe of left lung." [OBOL:automatic] comment: Mouse has single left lobe synonym: "bronchiole of left lower lobe" EXACT [] synonym: "bronchiole of left lower lobe of lung" EXACT [] synonym: "left lung caudal lobe bronchiole" EXACT [EHDAA2:0000947] xref: EHDAA2:0000947 xref: SCTID:80548008 is_a: UBERON:0003539 ! left lung bronchiole relationship: part_of UBERON:0008953 ! lower lobe of left lung [Term] id: UBERON:0012056 name: left lung upper lobe bronchiole def: "A bronchiole that is part of a upper lobe of left lung." [OBOL:automatic] comment: Mouse has single left lobe synonym: "bronchiole of left cranial lobe" EXACT [] synonym: "bronchiole of left upper lobe" EXACT [] synonym: "bronchiole of left upper lobe of lung" EXACT [] synonym: "left lung cranial lobe bronchiole" EXACT [EHDAA2:0000955] xref: EHDAA2:0000955 xref: SCTID:72426004 is_a: UBERON:0003539 ! left lung bronchiole relationship: part_of UBERON:0008952 ! upper lobe of left lung [Term] id: UBERON:0012059 name: right lung lower lobe bronchiole def: "A bronchiole that is part of a lower lobe of right lung." [OBOL:automatic] synonym: "bronchiole of right cranial lobe" EXACT [] synonym: "bronchiole of right lower lobe" EXACT [] synonym: "bronchiole of right lower lobe of lung" EXACT [] synonym: "right lung caudal lobe bronchiole" EXACT [EHDAA2:0004094] xref: EHDAA2:0004094 xref: EMAPA:19004 xref: SCTID:15215000 is_a: UBERON:0003538 ! right lung bronchiole relationship: develops_from UBERON:0005640 {source="EHDAA2"} ! right lung caudal lobe epithelium relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: UBERON:0012063 name: lobar bronchus of right lung middle lobe def: "A lobar bronchus that is part of a middle lobe of right lung." [OBOL:automatic] synonym: "bronchus of right middle lobe" EXACT [FMA:7401] synonym: "middle lobar bronchus" EXACT [FMA:7401] synonym: "middle lobe bronchus" EXACT [FMA:7401] xref: EMAPA:17998 xref: FMA:7401 is_a: UBERON:0003404 ! lobar bronchus of right lung relationship: part_of UBERON:0002174 ! middle lobe of right lung [Term] id: UBERON:0012065 name: lobar bronchus of left lung upper lobe def: "A lobar bronchus that is part of a upper lobe of left lung." [OBOL:automatic] synonym: "bronchus of left upper lobe" EXACT [FMA:7423] synonym: "left superior lobar bronchus" EXACT [FMA:7423] synonym: "left upper lobar bronchus" EXACT [FMA:7423] synonym: "left upper lobe bronchus" EXACT [FMA:7423] xref: FMA:7423 is_a: UBERON:0003405 ! lobar bronchus of left lung relationship: part_of UBERON:0008952 ! upper lobe of left lung property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0012066 name: lobar bronchus of left lung lower lobe def: "A lobar bronchus that is part of a lower lobe of left lung." [OBOL:automatic] synonym: "bronchus of left lower lobe" EXACT [FMA:7432] synonym: "left inferior lobar bronchus" EXACT [FMA:7432] synonym: "left lower lobar bronchus" EXACT [FMA:7432] synonym: "left lower lobe bronchus" EXACT [FMA:7432] xref: FMA:7432 xref: SCTID:361961004 is_a: UBERON:0003405 ! lobar bronchus of left lung relationship: part_of UBERON:0008953 ! lower lobe of left lung property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0012067 name: primary bronchiole def: "A bronchiole that arises from a segmental bronchus and does not contain cartilage." [ISBN:0123813611, Wikipedia:Bronchiole#Primary_bronchioles] subset: human_reference_atlas synonym: "proximal bronchiole" EXACT [FMA:62510] xref: FMA:62510 xref: Wikipedia:Bronchiole#Primary_bronchioles is_a: UBERON:0002186 {source="FMA"} ! bronchiole relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012068 name: right lung middle lobe bronchiole def: "A bronchiole that is part of a middle lobe of right lung." [OBOL:automatic] synonym: "bronchiole of middle right lobe" EXACT [] synonym: "bronchiole of right middle lobe" EXACT [] synonym: "bronchiole of right middle lobe of lung" EXACT [] xref: EMAPA:19008 xref: SCTID:69714005 is_a: UBERON:0003538 ! right lung bronchiole relationship: part_of UBERON:0002174 ! middle lobe of right lung [Term] id: UBERON:0012069 name: epithelium-associated lymphoid tissue xref: FMA:62811 is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue [Term] id: UBERON:0012070 name: palatal tooth def: "A tooth that is on the roof of the mouth." [http://palaeos.com/vertebrates/therapsida/anteosauria.html] synonym: "palatal teeth" EXACT OMO:0003004 [] is_a: UBERON:0003267 ! tooth of upper jaw [Term] id: UBERON:0012071 name: palate bone def: "Any bone that is part of a palate." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "palatal bone" EXACT [] xref: EMAPA:37930 {source="MA:th"} xref: NCIT:C33248 xref: UMLS:C1518857 {source="ncithesaurus:Palate_Bone"} is_a: UBERON:0003457 ! head bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0012072 ! palatal part of dermatocranium property_value: curator_notes "this is distinct (but not disjoint) from palatine bone" xsd:string [Term] id: UBERON:0012072 name: palatal part of dermatocranium synonym: "dermatocranium, palatal series" RELATED [ISBN:0073040584] synonym: "palatal series" RELATED [ISBN:0073040584] is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0007375 ! roof of mouth [Term] id: UBERON:0012073 name: tooth of palatine bone def: "A tooth that is attached to a palatine bone." [https://orcid.org/0000-0002-6601-2165] synonym: "palatine teeth" EXACT OMO:0003004 [] synonym: "palatine tooth" EXACT [] is_a: UBERON:0012070 ! palatal tooth property_value: external_definition "Teeth present in some fishes on the palatine bones, bones that lie inside the upper jaw bones (sometimes maxillaries, sometimes premaxillaries) usually behind the vomerine tooth patch." xsd:string {source="http://www.fishbase.org/glossary/Glossary.php?q=palatine+teeth"} [Term] id: UBERON:0012074 name: bony part of hard palate def: "A subdivision of skeletal system that subdivision_of a hard palate." [OBOL:automatic] subset: pheno_slim synonym: "bony palate" EXACT [FMA:59857] synonym: "hard palate skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "palatum osseum" EXACT [FMA:TA] xref: EMAPA:37444 {source="MA:th"} xref: FMA:59857 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0003216 {source="FMA"} ! hard palate relationship: part_of UBERON:0012072 ! palatal part of dermatocranium [Term] id: UBERON:0012075 name: replacement bone def: "Bone that forms as a replacement of another structural tissue." [ZFA:0001628] synonym: "replacement bones" EXACT OMO:0003004 [ZFA:0001628] xref: AAO:0010768 xref: TAO:0001637 xref: ZFA:0001628 is_a: UBERON:0001474 {source="ZFA"} ! bone element is_a: UBERON:0010522 {source="ZFA"} ! replacement element property_value: external_definition "Bone that forms as a replacement of another structural tissue.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001637", ontology="TAO", source="TAO:wd"} property_value: external_ontology_notes "This class was introduced to be consistent with the ZFA hierarchy. The corresponding TAO term was obsoleted, and never introduced into VSAO. Note that VSAO does have replacement element." xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0012076 name: tibiotalar joint def: "A skeletal joint that connects a tibia and connects a talus." [OBOL:automatic] synonym: "ankle joint" BROAD [Wikipedia:Ankle] synonym: "talotibial joint" NARROW [Wikipedia:Ankle] synonym: "tibioastragalar joint" NARROW [Wikipedia:Ankle] xref: SCTID:361864006 is_a: UBERON:0011980 ! crurotarsal joint property_value: external_ontology_notes "see also FMA:44063 ! tibiotalar part of medial ligament of ankle joint" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012078 name: fovea capitis of femur def: "The surface of the head of the femur is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea of head of femur, which is situated a little below and behind the center of the head, and gives attachment to the ligamentum teres." [Wikipedia:Fovea_of_head_of_femur] synonym: "fovea capitis" BROAD [Wikipedia:Fovea_of_head_of_femur] synonym: "fovea capitis femoris" EXACT OMO:0003011 [Wikipedia:Fovea_of_head_of_femur] synonym: "fovea capitis femoris (caput femoris)" EXACT [FMA:43700] synonym: "fovea capitis of femoral head" EXACT [] synonym: "fovea for ligament of head of femur" EXACT [FMA:43700] synonym: "fovea of head of femur" RELATED [Wikipedia:Fovea_of_head_of_femur] xref: FMA:43700 xref: Wikipedia:Fovea_of_head_of_femur is_a: UBERON:0005055 ! zone of long bone relationship: never_in_taxon NCBITaxon:9709 relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0012079 name: metapterygial axis def: "Proximodistal trajectory through a metapterygium[Wagner]." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/128] comment: persisted in sacropterygians, precursor to limb axis is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0000026 ! appendage [Term] id: UBERON:0012080 name: patella cartilage element def: "A cartilaginous condensation that has the potential to develop into a patella." [OBOL:automatic] xref: EMAPA:19140 is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from UBERON:0012081 ! patella pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton property_value: editor_note "Note some sources have this as intramembranous" xsd:string [Term] id: UBERON:0012081 name: patella pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a patella." [OBOL:automatic] xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0006256 {source="EMAPA"} ! knee joint primordium [Term] id: UBERON:0012082 name: bronchial lumen def: "An anatomical cavity that is part of a bronchus." [OBOL:automatic] synonym: "bronchial lumen" EXACT [FMA:62646] synonym: "lumen of bronchus" EXACT [FMA:62646] xref: FMA:62646 xref: SCTID:199401001 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002185 {source="FMA"} ! bronchus [Term] id: UBERON:0012083 name: lumen of primary bronchus def: "An anatomical cavity that is part of a main bronchus." [OBOL:automatic] synonym: "lumen of main bronchus" EXACT [FMA:13116] synonym: "main bronchial lumen" EXACT [FMA:13116] synonym: "principal bronchial lumen" EXACT [] xref: FMA:13116 is_a: UBERON:0012082 ! bronchial lumen relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0012084 name: lumen of secondary bronchus def: "An anatomical cavity that is part of a lobar bronchus." [OBOL:automatic] synonym: "lobar bronchial lumen" EXACT [FMA:62520] synonym: "lumen of lobar bronchus" EXACT [FMA:62520] synonym: "secondary bronchial lumen" EXACT [] xref: FMA:62520 is_a: UBERON:0012082 ! bronchial lumen relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0012085 name: lumen of tertiary bronchus def: "An anatomical cavity that is part of a segmental bronchus." [OBOL:automatic] synonym: "lumen of segmental bronchus" EXACT [FMA:62593] synonym: "segmental bronchial lumen" EXACT [FMA:62593] xref: FMA:62593 is_a: UBERON:0012082 ! bronchial lumen relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0012086 name: lumen of parabronchus def: "An anatomical cavity that is part of a parabronchus." [OBOL:automatic] is_a: UBERON:0012085 ! lumen of tertiary bronchus relationship: part_of UBERON:0008961 ! parabronchus [Term] id: UBERON:0012087 name: air capillary of parabronchus def: "An extension of the parabronchus, the walls of which are the site of gas exchange." [http://www.vetmed.vt.edu/education/Curriculum/VM8054/Labs/Lab26/Examples/exairves.htm, ISBN:0073040584] synonym: "air capillary" EXACT [] synonym: "air vesicle" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0012088 name: lateroobronchus is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0012100 name: appendicocostalis muscle def: "One of of three muscles associated with the uncinate processes." [PMID:15755883] synonym: "appendicocostalis" EXACT [PMID:15755883] is_a: UBERON:0003831 ! respiratory system muscle [Term] id: UBERON:0012101 name: perinatal stage def: "The period spanning the range immediately before and after birth." [http://orcid.org/0000-0002-6601-2165] synonym: "paranatal stage" NARROW [] is_a: UBERON:0000105 ! life cycle stage property_value: taxon_notes "In birds, the paranatal stage starts when the beak penetrates into the air pocket (air cell) between the inner and outer shell membranes" xsd:string [Term] id: UBERON:0012102 name: buccal salivary gland def: "A salivary gland that is part of a cheek." [OBOL:automatic] xref: FMA:59793 xref: NCIT:C32237 is_a: UBERON:0001044 ! saliva-secreting gland relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0012103 name: suspensory ligament of breast def: "Cooper's ligaments (also known as the suspensory ligaments of Cooper and the fibrocollagenous septa) are connective tissue in the breast that helps maintain structural integrity. Transmission diffraction tomography can reveal the anatomy. Cooper's Suspensory Ligament should not be confused with the pectineal ligament (sometimes called the inguinal ligament of Cooper) which shares the same eponym." [Wikipedia:Cooper%27s_ligaments] comment: Connects skin of mammary gland with deep fascia synonym: "Cooper's ligament" RELATED [Wikipedia:Cooper%27s_ligaments] synonym: "ligament of Cooper" RELATED [Wikipedia:Cooper%27s_ligaments] synonym: "retinaculum cutis mammae" EXACT [FMA:TA] synonym: "suspensory ligament of cooper" EXACT [FMA:58040] synonym: "suspensory ligament of the breast" RELATED [Wikipedia:Cooper%27s_ligaments] synonym: "suspensory ligaments of breast" RELATED [Wikipedia:Cooper%27s_ligaments] synonym: "suspensory ligaments of the breast" RELATED [Wikipedia:Cooper%27s_ligaments] synonym: "suspensory retinaculum of breast" EXACT [FMA:58040] xref: FMA:58040 xref: SCTID:279011006 xref: Wikipedia:Cooper%27s_ligaments is_a: UBERON:0000158 {source="FMA"} ! membranous layer is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0005200 ! thoracic mammary gland [Term] id: UBERON:0012104 name: sesamoid bone of the peroneus longus muscle comment: a coffee bean-shaped constant, large and regular bone. The lateral surface of the bone is convex in all directions and non-articular. The medial surface is covered with hyaline cartilage and articulates by means of a synovial joint with the corresponding facet of the cuboid bone. The histological structure and the mode of ossification of the os peroneum are identical to that of other short bones of the skeleton. synonym: "os peroneum" EXACT [PMCID:PMC1261702] is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0004251 ! hindlimb zeugopod bone is_a: UBERON:0011141 ! appendicular ossicle [Term] id: UBERON:0012105 name: baleen plate def: "A keratinous sieve composed of bristles that enables filter feeding in the mouth of mysticete whales." [Wikipedia:baleen] xref: Wikipedia:baleen is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0016618 ! baleen feeding system [Term] id: UBERON:0012106 name: baleen plate bristle def: "A keratinous bristle that enables filter feeding in the mouth of mysticete whales." [Wikipedia:baleen] synonym: "baleen plate fringe" EXACT [] synonym: "fringe of baleen plate" EXACT [] xref: Wikipedia:baleen is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0012105 ! baleen plate [Term] id: UBERON:0012108 name: postorbital bar def: "A strut formed from the union of the zygomatic process of the frontal bone with the frontal process of the zygomatic bone." [MURDOCH:1580, Wikipedia:Postorbital_Bar] synonym: "post-orbital bar" EXACT [] xref: Wikipedia:Postorbital_Bar is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0003113 {notes="orbital series"} ! dermatocranium [Term] id: UBERON:0012109 name: zygomatic process of frontal bone def: "The part of the zygomatic process consisting of the frontal bone[WP]." [Wikipedia:Zygomatic_process_of_frontal_bone] subset: human_reference_atlas synonym: "frontal bone - zygomatic process" EXACT [] synonym: "processus zygomaticus (os frontale)" EXACT [FMA:54389] synonym: "processus zygomaticus ossis frontalis" EXACT OMO:0003011 [Wikipedia:Zygomatic_process_of_frontal_bone] xref: FMA:54389 xref: SCTID:427577001 xref: Wikipedia:Zygomatic_process_of_frontal_bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012110 name: frontal process of zygomatic bone subset: human_reference_atlas synonym: "processus frontalis (os zygomaticum)" EXACT [FMA:52907] synonym: "processus frontalis ossis zygomatici" EXACT OMO:0003011 [FMA:52907, FMA:TA] synonym: "zygomatic bone - frontal process" EXACT [] xref: FMA:52907 xref: SCTID:116353002 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001683 ! jugal bone relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012111 name: diastema alt_id: UBERON:0013134 def: "A space or gap between two teeth." [UBERON:cjm, Wikipedia:Diastema_(dentistry)] comment: Some animals, like horses, that have diastema between incisors and premolars because canines were evolutionarily loss, sometimes have a vestigial canine in the diastema, but the diastema is still considered between the incisor and premolar. synonym: "diastemata" RELATED OMO:0003004 [] synonym: "interdental space" EXACT [] xref: FMA:77271 xref: MESH:D003970 xref: SCTID:410003009 xref: Wikipedia:Diastema_(dentistry) is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001708 ! jaw skeleton relationship: part_of UBERON:0003672 ! dentition property_value: taxon_notes "Many species of mammals have diastemata as a normal feature, most commonly between the incisors and molars" xsd:string [Term] id: UBERON:0012112 name: ingested food def: "A substance that is consumed by the organism for food." [http://orcid.org/0000-0002-6601-2165] xref: FMA:62964 is_a: UBERON:0000463 {source="FMA"} ! organism substance property_value: external_ontology_notes "FMA def restricts this to 'oral cavity, pharynx or esophagus', but child terms includes chyme - which is in the stomach" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012113 name: bolus of food def: "Ingested food has been chewed at the point of swallowing." [Wikipedia:Bolus_(digestion)] synonym: "bolus" BROAD [] synonym: "bolus of ingested food" EXACT [FMA:78441] synonym: "food bolus" EXACT [FMA:78441] xref: FMA:78441 xref: Wikipedia:Bolus_(digestion) is_a: UBERON:0012112 ! ingested food [Term] id: UBERON:0012114 name: cud def: "A bolus of semi-degraded food regurgitated from the reticulorumen of a ruminant, produced during the physical digestive process of rumination." [Wikipedia:Cud] synonym: "bolus of cud" RELATED [] xref: SCTID:110606000 xref: Wikipedia:Cud is_a: UBERON:0036017 ! regurgitated substance [Term] id: UBERON:0012115 name: dental comb def: "A dental structure found in some mammals, comprising a group of front teeth arranged in a manner that facilitates grooming." [Wikipedia:Toothcomb] synonym: "tooth comb" EXACT [Wikipedia:Toothcomb] synonym: "toothcomb" EXACT [Wikipedia:Toothcomb] xref: Wikipedia:Toothcomb is_a: UBERON:0009678 ! tooth row property_value: taxon_notes "The toothcomb occurs in lemuriform primates (which includes lemurs and lorisoids), treeshrews, colugos, hyraxes, and some African antelopes. The structures evolved independently in different types of mammals through convergent evolution and vary both in dental composition and structure. In most mammals the comb is formed by a group of teeth with fine spaces between them. The toothcombs in most mammals include incisors only, while in lemuriform primates they include incisors and canine teeth that tilt forward at the front of the lower jaw, followed by a canine-shaped first premolar. The toothcombs of colugos and hyraxes take a different form with the individual incisors being serrated, providing multiple tines per tooth" xsd:string [Term] id: UBERON:0012116 name: nutrient foramen conduit def: "Any of the passages admitting nutrient vessels to the medullary cavity of bone." [http://medical-dictionary.thefreedictionary.com/nutrient+foramen] is_a: UBERON:0005744 ! bone foramen [Term] id: UBERON:0012117 name: lumen of nutrient foramen def: "An anatomical space that is part of a nutrient foramen conduit, leading to the medullary cavity of the bone." [https://orcid.org/0000-0002-6601-2165] synonym: "nutrient foramen" EXACT [FMA:75304] synonym: "nutrient foramina" EXACT OMO:0003004 [] xref: FMA:75304 xref: SCTID:29288001 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0012116 ! nutrient foramen conduit [Term] id: UBERON:0012118 name: infraspinatus tendon def: "The infraspinatus muscle inserts at this tendon to the distal greater tubercle of the humerus. This tendon stretches across the shoulder joint to attach to the humerus and in doing so acts as a very strong ligament to hold the joint surface in apposition. This structure restricts the movement of the shoulder joint to flexion and extension (together with the suscapularis tendon and the supraspinatus tendon). A bursa lies under this tendon at the greater tubercle of the humerus. The bursa is lined by a synovial membrance and filled with synovial fluid and protects the infraspinatus tendon and the shoulder joint by allowing the transmissions of tension and sheer forces around an angle." [MURDOCH:963] synonym: "tendon of infraspinatus muscle" EXACT [FMA:37076] xref: FMA:37076 is_a: UBERON:0000043 ! tendon is_a: UBERON:0003579 ! shoulder connective tissue relationship: part_of UBERON:0001477 ! infraspinatus muscle [Term] id: UBERON:0012119 name: vinculum tendon of wing def: "A tendon which emerges from the distal end of the humerus and follows the posterior margin of the wing, attaching at the distal end of digit 2. The raches of the remiges (i.e., the stems of the flight feathers) are stabilized by passing through the vinculum." [http://palaeos.com/vertebrates/glossary/glossaryUV.html] is_a: UBERON:0000043 ! tendon is_a: UBERON:0003588 ! forelimb connective tissue relationship: part_of UBERON:0000024 ! forelimb wing [Term] id: UBERON:0012120 name: vinculum of tendon def: "A tendinous band that connects the phalanges and the flexor muscles of the autopods." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Vincula_tendina] synonym: "tendon vinculum" EXACT [FMA:42604] xref: FMA:42604 xref: SCTID:360764006 xref: Wikipedia:Vincula_tendina is_a: UBERON:0000043 ! tendon property_value: external_ontology_notes "This is not classified as a tendon in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012121 name: respiratory velum def: "A respiratory pump found in basal craniates." [Wikipedia:http\://palaeos.com/vertebrates/glossary/glossaryUV.html] synonym: "velum" BROAD [] is_a: UBERON:0000171 ! respiration organ relationship: never_in_taxon NCBITaxon:7776 relationship: present_in_taxon NCBITaxon:7762 property_value: function_notes "Muscular scroll-like flap that moves water through median nostril and over gills" xsd:string property_value: location_notes "trifid and posteriorly directed lamina arising from roof of pharynx, behind posterior end of naso-pharyngeal duct;" xsd:string property_value: taxon_notes "this is restricted to hagfishes; structure with same name found in tunicates." xsd:string [Term] id: UBERON:0012124 name: avian scapholunar bone comment: May correspond to radiale[Origin and evolution of birds, Feduccia] synonym: "radiale" RELATED [] synonym: "scapholunar" RELATED [] is_a: UBERON:0001480 ! proximal carpal bone [Term] id: UBERON:0012125 name: dermatological-muscosal system def: "Anatomical system that consists of the integumental system plus all mucosae and submucosae." [https://github.com/obophenotype/uberon/issues/53] synonym: "dermatological system" RELATED [OBI:MC] is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0010314 ! structure with developmental contribution from neural crest [Term] id: UBERON:0012126 name: fibulare def: "One of two elements that constitute the basal row of tarsals. The fibulare constitutes the preaxial element[AAO]." [AAO:0000913] synonym: "astragalus" RELATED [AAO:0000913] xref: AAO:0000913 is_a: UBERON:0011679 ! proximal tarsal bone property_value: external_definition "One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000913", ontology="AAO", source="AAO:LAP"} property_value: taxon_notes "In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale" xsd:string {source="AAO"} [Term] id: UBERON:0012127 name: feather barbicel def: "A minute hook that projects off of a feather barbule, holding barbules together." [http://orcid.org/0000-0002-6601-2165] synonym: "barbicel" BROAD SENSU [] synonym: "feather hooklet" EXACT [] synonym: "hooklet" BROAD SENSU [] xref: BTO:0003269 is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0012128 name: nose tip def: "Outermost point on an external nose or snout." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/109] subset: pheno_slim synonym: "apex nasi" EXACT OMO:0003011 [FMA:TA] synonym: "apex of nose" EXACT [FMA:59518] synonym: "nasal tip" EXACT [FMA:59518] synonym: "pirula" RELATED [https://www.abdn.ac.uk/bestiary/translat/84v.hti] synonym: "snout tip" RELATED [] synonym: "tip of nose" EXACT [FMA:59518] synonym: "tip of snout" RELATED [] xref: EMAPA:37915 {source="MA:th"} xref: FMA:59518 xref: SCTID:361926005 is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] id: UBERON:0012129 name: radial head of humerus def: "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb." [AAO:LAP, PHENOSCAPE:curators] synonym: "capitellum" RELATED [] synonym: "capitellum of humerus" EXACT [] synonym: "eminentia capitata" RELATED [AAO:0000838] synonym: "radial condyle" RELATED [AAO:0000838] synonym: "radial condyle of humerus" EXACT [] xref: AAO:0000838 is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004404 ! distal epiphysis of humerus property_value: external_definition "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb and fits into the socket joint of the olecranon process[AAO]." xsd:string {external_class="AAO:0000838", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0012130 name: olecranon fossa def: "A deep evacuation in the bone, into which the anconeal process of the ulna passes when the elbow joint is extended." [MURDOCH:894] synonym: "fossa olecrani" EXACT OMO:0003011 [Wikipedia:Olecranon_fossa] xref: FMA:23450 xref: Wikipedia:Olecranon_fossa is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004404 ! distal epiphysis of humerus [Term] id: UBERON:0012131 name: centrale def: "Endochondral bone located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [https://github.com/obophenotype/uberon/issues/124, PHENOSCAPE:AMAO] synonym: "central mesopodium bone" EXACT [] synonym: "centralia" RELATED OMO:0003004 [] synonym: "os centrale" EXACT [FMA:77232] xref: EMAPA:36170 xref: FMA:77232 is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0015067 ! centrale endochondral element relationship: develops_from UBERON:0015077 ! centrale cartilage property_value: curator_notes "This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus" xsd:string property_value: external_ontology_notes "the FMA term is under 'general anatomical term'." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012132 name: intercuneiform joint def: "The intercuneiform articulations are articulations among the cuneiform bones[WP,unverified]." [Wikipedia:Intercuneiform_articulations] synonym: "cuneocuboid" RELATED [Wikipedia:Intercuneiform_articulations] synonym: "cuneocuboid articulation" RELATED [Wikipedia:Intercuneiform_articulations] synonym: "intercuneiform" RELATED [Wikipedia:Intercuneiform_articulations] synonym: "intercuneiform and cuneocuboid articulations" RELATED [Wikipedia:Intercuneiform_articulations] synonym: "intercuneiform articulation" RELATED [Wikipedia:Intercuneiform_articulations] synonym: "intercuneiform joints" RELATED [Wikipedia:Intercuneiform_articulations] xref: FMA:35213 xref: Wikipedia:Intercuneiform_articulations is_a: UBERON:0000982 ! skeletal joint property_value: terminology_notes "The term 'cuneocuboid articulation' is sometimes used to describe the joint between the cuboid and lateral cuneiform, but this term isn't recognized by Terminologia Anatomica" xsd:string {source="WP"} [Term] id: UBERON:0012133 name: lateral-intermediate intercuneiform joint xref: FMA:73223 is_a: UBERON:0012132 ! intercuneiform joint property_value: editor_note "TODO - add connections" xsd:string [Term] id: UBERON:0012134 name: medial-intermediate intercuneiform joint xref: FMA:73222 is_a: UBERON:0012132 ! intercuneiform joint property_value: editor_note "TODO - add connections" xsd:string [Term] id: UBERON:0012135 name: prepollex skeleton comment: A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. editor note: TODO add articulation relations synonym: "cartilago pre-pollicis" RELATED [AAO:0000852] synonym: "prepollex" BROAD [AAO:0000852] xref: AAO:0000852 is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0005880 ! prepollex relationship: part_of UBERON:0009880 {source="AAO"} ! carpal skeleton [Term] id: UBERON:0012136 name: prehallux is_a: UBERON:0005881 ! autopodial extension relationship: part_of UBERON:0004454 ! tarsal region property_value: has_relational_adjective "prehallical" xsd:string [Term] id: UBERON:0012137 name: pedal digit 7 synonym: "foot digit 7" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind digit 7" EXACT [] synonym: "hind digit VII" EXACT [] synonym: "hind limb digit 7" EXACT [OBOL:accepted] synonym: "pedal digit VII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "pes digit VII" EXACT [] synonym: "seventh toe" EXACT [] synonym: "toe 7" EXACT [] is_a: UBERON:0001466 ! pedal digit relationship: part_of UBERON:5012137 ! pedal digit 7 plus metapodial segment property_value: ray_number "7" xsd:nonNegativeInteger [Term] id: UBERON:0012138 name: pedal digit 8 synonym: "digitus octus pedis" EXACT OMO:0003011 [] synonym: "eigth toe" EXACT [] synonym: "foot digit 8" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind digit 8" EXACT [] synonym: "hind digit VIII" EXACT [] synonym: "hind limb digit 8" EXACT [OBOL:accepted] synonym: "pedal digit VIII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "pes digit VIII" EXACT [] synonym: "toe 8" EXACT [] is_a: UBERON:0001466 ! pedal digit relationship: part_of UBERON:5012138 ! pedal digit 8 plus metapodial segment property_value: ray_number "8" xsd:nonNegativeInteger [Term] id: UBERON:0012139 name: segment of autopod is_a: UBERON:0002529 {notes="may be revised"} ! limb segment relationship: part_of UBERON:0002470 ! autopod region [Term] id: UBERON:0012140 name: digitopodium region def: "A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region." [https://github.com/obophenotype/uberon/issues/131, PHENOSCAPE:ni] synonym: "acropodium (Wagner)" RELATED [] is_a: UBERON:0012139 ! segment of autopod property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:anyURI property_value: terminology_notes "some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:string [Term] id: UBERON:0012141 name: manual digitopodium region def: "A digitopodium region that is part of a manus[Obol]. This includes the fingers and metacarpal region, but excludes the carpal region." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0005451 ! segment of manus is_a: UBERON:0012140 ! digitopodium region property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:anyURI property_value: terminology_notes "some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:string [Term] id: UBERON:0012142 name: pedal digitopodium region def: "A digitopodium region that is part of a pes[Obol]. This includes the toes and metatarsal region, but excludes the tarsals region." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0005445 ! segment of pes is_a: UBERON:0012140 ! digitopodium region property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:anyURI property_value: terminology_notes "some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:string [Term] id: UBERON:0012150 name: skeleton of digitopodium def: "A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton." [PHENOSCAPE:ni] synonym: "digitopodium" RELATED [PHENOSCAPE:ni] synonym: "skeleton of digits" RELATED COMPARATIVE_PREFERRED [] is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0006717 ! autopodial skeleton relationship: part_of UBERON:0012140 ! digitopodium region property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:anyURI property_value: terminology_notes "some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:string [Term] id: UBERON:0012151 name: skeleton of manual digitopodium def: "A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton." [https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ni] synonym: "manual digitopodium" RELATED [] is_a: UBERON:0012150 ! skeleton of digitopodium relationship: part_of UBERON:0001442 ! skeleton of manus relationship: part_of UBERON:0012141 {source="FMA"} ! manual digitopodium region property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:anyURI property_value: terminology_notes "some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:string [Term] id: UBERON:0012152 name: skeleton of pedal digitopodium def: "A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton." [https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ni] synonym: "pedal digitopodium" RELATED [] is_a: UBERON:0012150 ! skeleton of digitopodium relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0012142 ! pedal digitopodium region property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:anyURI property_value: terminology_notes "some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod" xsd:string [Term] id: UBERON:0012167 name: buccal fat pad def: "The Buccal fat pad is one of several encapsulated fat masses in the cheek. It is a deep fat pad located on either side of the face between the buccinator muscle and several more superficial muscles. It should not be confused with the malar fat pad, which is directly below the skin of the cheek. It should also not be confused with jowl fat pads. It is implicated in the formation of hollow cheeks and the nasolabial fold, but not in the formation of jowls." [Wikipedia:Buccal_fat_pad] synonym: "Bichat's fat pad" EXACT [FMA:59799] synonym: "cheek fat pad" EXACT [] xref: FMA:59799 xref: SCTID:25930004 xref: Wikipedia:Buccal_fat_pad is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0003916 ! fat pad relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0012168 name: umbilical cord blood def: "Blood that remains in the placenta and in the attached umbilical cord after childbirth[WP]." [Wikipedia:Cord_blood] comment: Cord blood is collected because it contains stem cells, which can be used to treat hematopoietic and genetic disorders.[WP] subset: efo_slim synonym: "cord blood" RELATED [BTO:0004053] synonym: "fetal blood" RELATED [MESH:A12.207.152.200] synonym: "umbilical cord blood" RELATED [MESH:A12.207.152.200] xref: BTO:0004053 xref: CALOHA:TS-1079 xref: EFO:0001942 xref: MESH:D005312 xref: Wikipedia:Cord_blood is_a: UBERON:0013755 ! arterial blood relationship: part_of UBERON:0000323 ! late embryo [Term] id: UBERON:0012170 name: core of nucleus accumbens subset: efo_slim synonym: "accumbens nucleus core" RELATED [BAMS:AcbC] synonym: "accumbens nucleus, core" RELATED [BAMS:AcbC] synonym: "core of nucleus accumbens" EXACT [NLXANAT:20090306] synonym: "core region of nucleus accumbens" EXACT [FMA:77383] synonym: "nucleus accumbens core" EXACT [NLXANAT:20090306] synonym: "nucleusa ccumbens core" RELATED [BAMS:ACBc] xref: BAMS:ACBc xref: BAMS:AcbC xref: DHBA:10340 xref: EFO:0002458 xref: FMA:77383 xref: neuronames:1840 xref: NLXANAT:20090306 xref: PBA:10093 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] id: UBERON:0012171 name: shell of nucleus accumbens def: "Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell." [NLXANAT:20090307] subset: efo_slim synonym: "accumbens nucleus shell" RELATED [BAMS:AcbSh] synonym: "accumbens nucleus, shell" RELATED [BAMS:AcbSh] synonym: "nucleus accumbens shell" EXACT [NLXANAT:20090307] synonym: "shell of nucleus accumbens" EXACT [NLXANAT:20090307] synonym: "shell region of nucleus accumbens" EXACT [FMA:77387] xref: BAMS:ACBs xref: BAMS:AcbSh xref: DHBA:10341 xref: EFO:0002459 xref: FMA:77387 xref: neuronames:1163 xref: NLXANAT:20090307 xref: PBA:10094 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] id: UBERON:0012172 name: stomach primordium def: "A primordium that has the potential to develop into a stomach." [OBOL:automatic] subset: efo_slim synonym: "stomach endoderm" RELATED [EFO:0002580] xref: EFO:0002580 xref: NCIT:C34305 xref: UMLS:C1514976 {source="ncithesaurus:Stomach_Primordium"} is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0003258 ! endoderm of foregut [Term] id: UBERON:0012173 name: middle suprarenal artery def: "The middle suprarenal arteries (middle capsular arteries; suprarenal arteries) are two small vessels which arise, one from either side of the abdominal aorta, opposite the superior mesenteric artery. They pass laterally and slightly upward, over the crura of the diaphragm, to the suprarenal glands, where they anastomose with suprarenal branches of the inferior phrenic and renal arteries. In the fetus these arteries are of large size." [Wikipedia:Middle_suprarenal_arteries] subset: human_reference_atlas synonym: "arteria suprarenalis media" RELATED OMO:0003011 [Wikipedia:Middle_suprarenal_arteries] synonym: "middle capsular artery" RELATED [Wikipedia:Middle_suprarenal_arteries] synonym: "middle suprarenal" RELATED [Wikipedia:Middle_suprarenal_arteries] synonym: "middle suprarenal arterial tree" EXACT [FMA:14754] synonym: "middle suprarenal artery" RELATED [Wikipedia:Middle_suprarenal_arteries] xref: FMA:14754 xref: SCTID:303425000 xref: Wikipedia:Middle_suprarenal_arteries is_a: UBERON:0005624 ! suprarenal artery is_a: UBERON:0012254 ! abdominal aorta artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012174 name: obsolete geniculate nucleus comment: inappropriate grouping synonym: "geniculate body" EXACT [] xref: EFO:0002463 xref: SCTID:362376002 is_obsolete: true consider: UBERON:0001926 consider: UBERON:0001927 [Term] id: UBERON:0012175 name: acoustico-facial VII-VIII ganglion complex synonym: "acousticofacial ganglion" EXACT [] synonym: "facio-acoustic ganglion" EXACT [] synonym: "facio-acoustic ganglion complex" RELATED [EMAPA:16794] synonym: "facio-acoustic ganglion complex VII-VIII" EXACT [EMAPA:16794] synonym: "facio-acoustic VII-VIII ganglion complex" RELATED [VHOG:0000715] xref: EHDAA2:0000494 xref: EMAPA:16794 xref: SCTID:361514006 is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0003051 {source="EHDAA2"} ! ear vesicle relationship: develops_from UBERON:0006232 {source="cjm"} ! facio-acoustic VII-VIII preganglion complex [Term] id: UBERON:0012176 name: comb def: "A vascular, red cutaneous structure attached in a sagittal plane to the dorsum of the skull of domestic fowl. It consists of a base attached to the skull, a central mass called the body, a backward projecting blade and upward projecting points." [http://medical-dictionary.thefreedictionary.com/pea+comb] xref: SCTID:3643003 is_a: UBERON:0000021 ! cutaneous appendage [Term] id: UBERON:0012177 name: skin apocrine gland def: "An apocrine gland that is part of a skin of body." [OBOL:automatic] comment: Note that 'skin apocrine gland' does not cover 'apocrine sweat gland': in the former, "apocrine" refers to the type of secretion mechanism, while in the latter it refers to a structural feature. xref: MA:0000147 is_a: UBERON:0002419 {source="MA"} ! skin gland is_a: UBERON:0008974 ! apocrine gland is_a: UBERON:0019319 ! exocrine gland of integumental system [Term] id: UBERON:0012179 name: bone of pelvis xref: EMAPA:37249 {source="MA:th"} xref: MA:0000532 is_a: UBERON:0003828 {source="MA"} ! abdominal segment bone is_a: UBERON:0005179 ! pelvic region element property_value: external_ontology_notes "in MA, this is the superclass of the 3 innominate elements (pelvic girdle bones) and caudal and sacral vertebrae. This class is included to ensure consistency across anatomical ontologies" xsd:string {external_ontology="MA"} [Term] id: UBERON:0012180 name: head or neck skin def: "A zone of skin that is part of a craniocervical region." [OBOL:automatic] xref: EMAPA:37276 {source="MA:th"} xref: MA:0000574 xref: NCIT:C12294 xref: UMLS:C1522650 {source="ncithesaurus:Skin_of_the_Scalp_and_Neck"} is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0012181 name: tonsil crypt def: "Tonsils consist of an extensive system of crypts, which result in a large internal surface. The tonsils contain four lymphoid compartments that influence immune functions, namely the reticular crypt epithelium, the extrafollicular area, the mantle zones of lymphoid follicles, and the follicular germinal centers. In human palatine tonsils, the very first part exposed to the outside environment is tonsillar epithelium." [Wikipedia:Tonsillar_crypts] subset: human_reference_atlas synonym: "cryptae tonsillares" EXACT OMO:0003011 [Wikipedia:Tonsillar_crypts] synonym: "tonsillar crypt" EXACT [FMA:55044] xref: FMA:55044 xref: MA:0000777 xref: NCIT:C33791 xref: SCTID:143723007 xref: UMLS:C0229876 {source="ncithesaurus:Tonsillar_Crypt"} xref: Wikipedia:Tonsillar_crypts is_a: UBERON:0013696 ! tonsil epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012184 name: obsolete tunica vasculosa plexus comment: obsolete term deriving from MA to NCITA mappings. property_value: term_tracker_item "https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376" xsd:anyURI is_obsolete: true consider: MA:0001284 consider: NCIT:C33823 [Term] id: UBERON:0012186 name: ovary growing follicle def: "An ovarian follicle undergoing maturation." [ncithesaurus:Growing_Follicle] xref: EMAPA:35628 xref: MA:0001708 xref: NCIT:C32702 xref: UMLS:C1512279 {source="ncithesaurus:Growing_Follicle"} is_a: UBERON:0001305 {source="MA"} ! ovarian follicle [Term] id: UBERON:0012187 name: frontal artery def: "The supratrochlear artery (or frontal artery), one of the terminal branches of the ophthalmic artery, branches off where the ophthalmic travels posterior to the trochlea." [Wikipedia:Supratrochlear_artery] subset: human_reference_atlas synonym: "a supratrochlearis" RELATED [Wikipedia:Supratrochlear_artery] synonym: "frontal arteries" RELATED [Wikipedia:Supratrochlear_artery] synonym: "frontal artery" RELATED [Wikipedia:Supratrochlear_artery] synonym: "supratrochlear artery" EXACT [FMA:50025] synonym: "supratrochlear branch of ophthalmic artery" EXACT [FMA:50025] xref: EMAPA:37590 {source="MA:th"} xref: FMA:50025 xref: MA:0001960 xref: NCIT:C52856 xref: SCTID:369332005 xref: UMLS:C1708100 {source="ncithesaurus:Frontal_Artery"} xref: Wikipedia:Supratrochlear_artery is_a: UBERON:0015156 {source="FMA"} ! terminal branch of ophthalmic artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012193 name: phrenic vein def: "The veins that run parallel to the phrenic arteries which include the two superior and two inferior phrenic veins." [ncithesaurus:Phrenic_Vein] xref: EMAPA:37180 {source="MA:th"} xref: MA:0002194 xref: NCIT:C53062 xref: UMLS:C1709532 {source="ncithesaurus:Phrenic_Vein"} is_a: UBERON:0001638 ! vein [Term] id: UBERON:0012194 name: superior intercostal vein def: "The superior intercostal veins are two veins that drain the 2nd, 3rd, and 4th intercostal spaces, one vein for each side of the body." [Wikipedia:Superior_intercostal_vein] subset: human_reference_atlas xref: EMAPA:37193 {source="MA:th"} xref: MA:0002226 xref: NCIT:C33680 xref: UMLS:C1515066 {source="ncithesaurus:Superior_Intercostal_Vein"} xref: Wikipedia:Superior_intercostal_vein is_a: UBERON:0012197 ! intercostal vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012195 name: left superior intercostal vein subset: human_reference_atlas xref: FMA:4797 xref: SCTID:27297006 is_a: UBERON:0012194 ! superior intercostal vein is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012196 name: right superior intercostal vein subset: human_reference_atlas xref: FMA:4877 xref: SCTID:80721005 is_a: UBERON:0012194 ! superior intercostal vein is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012197 name: intercostal vein def: "The intercostal veins are a group of veins which drain the area between the ribs." [Wikipedia:Intercostal_veins] xref: EMAPA:18762 xref: MA:0003166 xref: SCTID:281057004 xref: Wikipedia:Intercostal_veins is_a: UBERON:0001638 ! vein [Term] id: UBERON:0012198 name: intercostal space def: "A space in the rib cage between two successive ribs." [http://orcid.org/0000-0002-6601-2165] xref: FMA:12243 xref: SCTID:243937005 xref: Wikipedia:Intercostal_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003252 ! thoracic rib cage [Term] id: UBERON:0012199 name: posterior intercostal vein def: "The posterior intercostal veins are veins that drain the intercostal spaces posteriorly. They run with their corresponding posterior intercostal artery on the underside of the rib, the vein superior to the artery. Each vein also gives off a dorsal branch that drains blood from the muscles of the back. There are eleven posterior intercostal veins on each side. Their patterns are variable, but they are commonly arranged as: The 1st posterior intercostal vein, supreme intercostal vein, drains into the brachiocephalic vein or the vertebral vein. The 2nd and 3rd (and often 4th) posterior intercostal veins drain into the superior intercostal vein. The remaining posterior intercostal veins drain into the azygos vein on the right, or the hemiazygos vein on the left." [Wikipedia:Posterior_intercostal_veins] subset: human_reference_atlas synonym: "venae intercostalis posterior" EXACT OMO:0003011 [FMA:4858] xref: FMA:4858 xref: SCTID:89209000 xref: Wikipedia:Posterior_intercostal_veins is_a: UBERON:0012197 ! intercostal vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012200 name: anterior intercostal vein def: "The anterior intercostal veins are the veins which drain the anterior intercostal space." [Wikipedia:Anterior_intercostal_veins] subset: human_reference_atlas xref: FMA:12831 xref: SCTID:15546000 xref: Wikipedia:Anterior_intercostal_veins is_a: UBERON:0012197 ! intercostal vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012236 name: intercostal lymph node def: "The intercostal lymph nodes (intercostal glands ) occupy the posterior parts of the intercostal spaces, in relation to the intercostal vessels. They receive the deep lymphatics from the postero-lateral aspect of the chest; some of these vessels are interrupted by small lateral intercostal glands." [Wikipedia:Intercostal_lymph_nodes] synonym: "intercostal node" EXACT [FMA:5932] synonym: "nodi lymphoidei intercostales" EXACT [Wikipedia:Intercostal_lymph_nodes] synonym: "nodus intercostale" EXACT [FMA:5932] xref: FMA:5932 xref: NCIT:C77652 xref: SCTID:204088001 xref: UMLS:C0229761 {source="ncithesaurus:Intercostal_Lymph_Node"} xref: Wikipedia:Intercostal_lymph_nodes is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node is_a: UBERON:8450004 ! intercostal element [Term] id: UBERON:0012237 name: superior phrenic vein def: "The superior phrenic vein, i.e. , the vein accompanying the pericardiacophrenic artery, usually opens into the internal mammary vein." [Wikipedia:Superior_phrenic_vein] subset: human_reference_atlas xref: FMA:78121 xref: SCTID:198356008 xref: Wikipedia:Superior_phrenic_vein is_a: UBERON:0012193 {source="cjm"} ! phrenic vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012238 name: ureteric bud trunk def: "Ureteric bud cells that elongate to form a rigid structure (stalk) consisting of polarized epithelial cells without branching; the stalks differentiate into the collecting system of the mature kidney, while the tip cells interact with the adjacent cells of the metanephric mesenchyme, inducing their conversion into nephrons." [MP:0011761] subset: pheno_slim synonym: "ureteric bud stalk" RELATED [MP:0011761] synonym: "ureteric stalk" RELATED [EMAPA:27608] synonym: "ureteric trunk" RELATED [EMAPA:27608] xref: EMAPA:27608 xref: EMAPA:27697 is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0010137 ! polarized epithelium is_a: UBERON:0034969 ! epithelial layer of duct relationship: part_of UBERON:0000084 ! ureteric bud [Term] id: UBERON:0012239 name: urinary bladder vasculature def: "Network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP]." [MP:MP] subset: human_reference_atlas subset: pheno_slim synonym: "bladder vasculature" EXACT [] synonym: "blood vessel of bladder" RELATED [EMAPA:28679] synonym: "blood vessels of bladder" EXACT [EMAPA:28679] synonym: "set of urinary bladder blood vessels" EXACT [] xref: EMAPA:28679 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ relationship: part_of UBERON:0001255 ! urinary bladder relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012240 name: urethral meatus def: "External opening or orifice of the urethra through which urine and seminal fluid (in males only) leave the body; in males the meatus presents as a vertical slit normally positioned at the tip of glans penis; in females the meatus is located between the clitoris and the vagina in the vulvular vestibule of the female genitalia[MP]." [MP:MP, Wikipedia:Urinary_meatus] subset: pheno_slim synonym: "external meatus of urethra" EXACT [FMA:19650] synonym: "external urethral orifice" EXACT [FMA:19650] synonym: "external urethral ostium" EXACT [FMA:19650] synonym: "external urinary meatus" EXACT [FMA:19650] synonym: "meatus urinarius" EXACT OMO:0003011 [] synonym: "orificium urethrae externum" EXACT OMO:0003011 [] synonym: "orificium urethræ externum" EXACT OMO:0003011 [] synonym: "urethral meatus" EXACT [FMA:19650] synonym: "urinary meatus" RELATED [] xref: EMAPA:37977 {source="MA:th"} xref: FMA:19650 xref: SCTID:181424008 xref: Wikipedia:Urinary_meatus is_a: UBERON:0010418 ! urethral opening relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0012241 name: male urethral meatus def: "A urethral meatus that is part of a male urethra[Automatically generated definition]." [OBOL:automatic, Wikipedia:External_urethral_orifice_(male)] synonym: "distal urethral opening of male" RELATED [EMAPA:36434] synonym: "external orifice of male urethra" EXACT [FMA:85265] synonym: "external urethral orifice (male)" EXACT [FMA:85265] synonym: "male urethra ostium" EXACT [MA:0002642] synonym: "ostium urethrae externum (urethra masculina)" EXACT OMO:0003011 [FMA:TA] synonym: "urethral meatus of penile urethra" EXACT [EMAPA:36434] synonym: "urethral opening of penile urethra" RELATED [EMAPA:36434] xref: EMAPA:36434 xref: FMA:85265 xref: MA:0002642 xref: SCTID:279478000 xref: Wikipedia:External_urethral_orifice_(male) is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012240 ! urethral meatus relationship: part_of UBERON:0001299 ! glans penis relationship: part_of UBERON:0001333 ! male urethra property_value: external_definition "The external urethral orifice is the external opening or meatus of the urethra, normally placed at the tip of glans penis; it presents as a vertical slit, possibly bounded on either side by two small labia-like projections, In some cases the slit may be more rounded. This occurs naturally in some males and may also be a side effect of excess skin removal during circumcision. Congenital misplacement of the urethral orifice is called hypospadias when it is located in the underside (ventral aspect) of the penis, and epispadias when located in the dorsum (upper aspect). Improper shaping of the meatus can result in meatal stenosis." xsd:string {source="Wikipedia:External_urethral_orifice_(male)"} [Term] id: UBERON:0012242 name: internal urethral orifice def: "The usually crescent-shaped opening of the urinary bladder into the urethra, placed at the anteroinferior angle (apex) of the urinary bladder trigone." [MGI:anna, MP:0011782] subset: pheno_slim synonym: "internal meatus of urethra" EXACT [FMA:85263] synonym: "internal urethral orifice of urinary bladder" EXACT [FMA:85263] synonym: "internal urethral ostium" EXACT [FMA:85263] synonym: "internal urethral ostium" RELATED [MP:0011782] synonym: "internal urinary meatus" RELATED [MP:0011782] synonym: "orificium urethrae internum" EXACT OMO:0003011 [MP:0011782] synonym: "ostium orificium internum" EXACT OMO:0003011 [] synonym: "ostium urethrae internum" EXACT OMO:0003011 [Wikipedia:Internal_urethral_orifice] synonym: "vesicourethral orifice" EXACT [FMA:85263] xref: FMA:85263 xref: SCTID:362228001 xref: Wikipedia:Internal_urethral_orifice is_a: UBERON:0010418 ! urethral opening relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0012243 name: nuptial pad def: "Raised calluses of cornified epidermis used by the male to hold the female during mating." [ISBN:0073040584] synonym: "nuptial ball" EXACT [Wikipedia:Nuptial_pad] synonym: "nuptial excrescence" EXACT [Wikipedia:Nuptial_pad] synonym: "thumb pad" RELATED [Wikipedia:Nuptial_pad] xref: AAO:0010177 xref: Wikipedia:Nuptial_pad is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0012244 name: stratum intermedium of epidermis def: "A temporary layer between old and new skin that is invalided by white blood cells[Kardong]." [ISBN:0073040584] is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis [Term] id: UBERON:0012245 name: silk def: "A protein fiber composed mainly of fibroin and produced by certain arthropods[WP,modified]." [Wikipedia:Silk] xref: BTO:0002854 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MESH:D047011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SPD:0000318 xref: Wikipedia:Silk is_a: UBERON:0000463 {source="SPD"} ! organism substance [Term] id: UBERON:0012246 name: thyroid follicular lumen def: "A follicular lumen is the closed cavity within a follicle of the thyroid gland. It is surrounded by follicular cells and filled with colloid, a concentrated solution of thyroglobulin." [Wikipedia:Follicular_lumen] synonym: "follicular lumen" BROAD [Wikipedia:Follicular_lumen] synonym: "lumen of thyroid follicle" EXACT [FMA:68829] synonym: "thyroid follicle lumen" EXACT [FMA:68829] synonym: "thyroid follicular space" EXACT [FMA:68829] xref: FMA:68829 xref: Wikipedia:Follicular_lumen is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005305 ! thyroid follicle [Term] id: UBERON:0012247 name: cervical gland def: "Mucus-secreting glands in the mucosa of the uterine cervix." [http://www.thefreedictionary.com/cervical+glands] subset: human_reference_atlas synonym: "glandulae cervicales" EXACT [FMA:TA] xref: NCIT:C32296 xref: SCTID:280836000 xref: UMLS:C2724437 {source="ncithesaurus:Cervical_Gland"} is_a: UBERON:0002451 ! endometrial gland relationship: fma_set_term FMA:71646 relationship: part_of UBERON:0012248 ! cervical mucosa relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012248 name: cervical mucosa def: "Lining of the head of the uterus (cervix); contains large branched glands; does not undergo sloughing." [BTO:0000411] xref: BTO:0000411 is_a: UBERON:0001295 ! endometrium relationship: part_of UBERON:0000002 ! uterine cervix [Term] id: UBERON:0012249 name: ectocervix alt_id: UBERON:0010182 def: "The part of the cervix uteri that protrudes into the vagina and is lined with stratified squamous epithelium." [BTO:0001850, Wikipedia:Vaginal_portion_of_cervix] subset: human_reference_atlas synonym: "ectocervix" EXACT [BTO:0001850, FMA:86484] synonym: "exocervix" RELATED [BTO:0001850] synonym: "portio vaginalis" EXACT [Wikipedia:Vaginal_portion_of_cervix] synonym: "portio vaginalis cervicis" EXACT OMO:0003011 [BTO:0001850] synonym: "uterine ectocervix" EXACT [CALOHA:TS-1098] synonym: "vaginal part of cervix" EXACT [FMA:77056] xref: BTO:0001850 xref: CALOHA:TS-1098 xref: FMA:77056 xref: FMA:86484 xref: NCIT:C12310 xref: SCTID:264459002 xref: UMLS:C0227829 {source="ncithesaurus:Ectocervix"} xref: Wikipedia:Vaginal_portion_of_cervix is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000002 {source="BTO"} ! uterine cervix relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "distinction between two FMA classes not clear - we merge them here" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012250 name: cervix glandular epithelium def: "A glandular epithelium that is part of a uterine cervix." [OBOL:automatic] subset: human_reference_atlas synonym: "cervix columnar epithelium" RELATED [] xref: NCIT:C54414 xref: UMLS:C1707350 {source="ncithesaurus:Cervix_Columnar_Epithelium"} is_a: UBERON:0004801 ! cervix epithelium is_a: UBERON:0006799 ! glandular epithelium relationship: present_in_taxon NCBITaxon:9606 property_value: structure_notes "The 'glandular' or columnar epithelium of the cervix is located cephalad to the squamocolumnar junction. It covers a variable amount of the ectocervix and lines the endocervical canal. It is comprised of a single layer of mucin-secreting cells. The epithelium is thrown into longitudinal folds and invaginations that make up the so-called endocervical glands (they are not true glands). These infolding crypts and channels make the cytologic and colposcopic detection of neoplasia less reliable and more problematic. The complex architecture of the endocervical glands gives the columnar epithelium a papillary appearance through the colposcope and a grainy appearance upon gross visual inspection. The single cell layer allows the coloration of the underlying vasculature to be seen more easily. Therefore, the columnar epithelium appears more red in comparison with the more opaque squamous epithelium." xsd:string {source="http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx"} [Term] id: UBERON:0012251 name: ectocervical epithelium def: "An epithelium that is part of a ectocervix." [OBOL:automatic] synonym: "exocervical epithelium" EXACT [] xref: SCTID:361376000 is_a: UBERON:0004801 ! cervix epithelium relationship: part_of UBERON:0012249 ! ectocervix [Term] id: UBERON:0012252 name: endocervical epithelium def: "The glandular epithelium that lines the endocervix." [ncithesaurus:Endocervical_Glandular_Epithelium] subset: human_reference_atlas synonym: "endocervical glandular epithelium" EXACT [] xref: NCIT:C96180 xref: SCTID:362256006 is_a: UBERON:0012250 ! cervix glandular epithelium relationship: part_of UBERON:0000458 ! endocervix relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012253 name: cervical squamo-columnar junction def: "Region of cervical epithelium where columnar epithelium of endocervic and the stratified non-keratinising squamous epithelium of the ectocervic meet." [http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx] comment: Site of 90% of lower genital tract neoplasia. This junction is presumed, but not proven, to be the embryologic junction of the Müllerian and urogenital sinus epithelia. synonym: "squamo-columnar junction of uterine cervix" EXACT [] synonym: "squamocolumnar junction" BROAD [] synonym: "squamocolumnar junction of uterine cervix" EXACT [] xref: NCIT:C97148 xref: SCTID:280451001 is_a: UBERON:0004801 ! cervix epithelium [Term] id: UBERON:0012254 name: abdominal aorta artery def: "An artery that originates from the abdominal aorta." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Abdominal_aorta#Branches] subset: pheno_slim synonym: "abdominal artery" EXACT [] synonym: "artery of abdomen" EXACT [] xref: SCTID:281470000 is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0012255 name: inferior phrenic artery def: "The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively." [Wikipedia:Inferior_phrenic_arteries] subset: human_reference_atlas synonym: "arteriae phrenicae inferiores" EXACT OMO:0003011 [Wikipedia:Inferior_phrenic_artery] synonym: "inferior phrenic artery" RELATED [Wikipedia:Inferior_phrenic_arteries] xref: FMA:14734 xref: SCTID:244283000 xref: Wikipedia:Inferior_phrenic_arteries is_a: UBERON:0002057 ! phrenic artery is_a: UBERON:0012254 ! abdominal aorta artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png" xsd:anyURI [Term] id: UBERON:0012256 name: digestive syncytial vacuole is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0001007 ! digestive system relationship: present_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} property_value: editor_note "cede to GO or CL" xsd:string property_value: taxon_notes "in Aceola, Digestion is accomplished by means of a syncytium that forms a vacuole around ingested food. There are no epithelial cells lining the digestive vacuole, although there is sometimes a short pharynx leading from the mouth to the vacuole" xsd:string {source="WP"} [Term] id: UBERON:0012260 name: alular digit def: "A manual digit found in Aves that is the most preaxial position and is morphologically similar to digit 1 in the standard tetrapod configuration and develops from embryonic digit 2, with contributions from embryonic digit 1." [https://github.com/obophenotype/uberon/issues/247, https://github.com/obophenotype/uberon/issues/264, PhenoscapeRCN:Oct2012, PMID:10220427] comment: Hypothesized to be homologous to manual digit 1 of other tetrapods. Develops from the embryonic digit that is positionally the 2nd, with contributions from the 1st synonym: "alula" NARROW [] synonym: "alula (Aves)" NARROW [] synonym: "digit I of manus" RELATED [] synonym: "digit I(CII) of manus" RELATED [] synonym: "wing digit 1 (adult)" RELATED [] synonym: "wing digit 2 (embryonic)" RELATED [] synonym: "wing digit I" RELATED [] is_a: UBERON:0002389 ! manual digit relationship: part_of UBERON:5012260 ! alular digit plus metapodial segment [Term] id: UBERON:0012261 name: manual major digit (Aves) def: "A manual digit found in Aves that is morphologically similar to digit 2 in the standard tetrapod configuration and develops from embryonic digit 3." [PhenoscapeRCN:Oct2012, PMID:10220427] comment: Hypothesized to be homologous to manual digit 2 of other tetrapods synonym: "digit II of manus" RELATED [] synonym: "digit II(CIII) of manus" RELATED [] synonym: "manual major digit" RELATED [] synonym: "wing digit 2 (adult)" RELATED [] synonym: "wing digit 3 (embryonic)" RELATED [] synonym: "wing digit II" RELATED [] is_a: UBERON:0002389 ! manual digit relationship: part_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment [Term] id: UBERON:0012262 name: manual minor digit (Aves) def: "A manual digit found in Aves that is morphologically similar to digit 3 in the standard tetrapod configuration and develops from embryonic digit 4." [PhenoscapeRCN:Oct2012, PMID:10220427] comment: Hypothesized to be homologous to manual digit 3 of other tetrapods synonym: "digit III of manus" RELATED [] synonym: "digit III(CIV) of manus" RELATED [] synonym: "manual minor digit" RELATED [] synonym: "wing digit 3 (adult)" RELATED [] synonym: "wing digit 4 (embryonic)" RELATED [] synonym: "wing digit III" RELATED [] is_a: UBERON:0002389 ! manual digit relationship: part_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment [Term] id: UBERON:0012263 name: obsolete equine cannon bone is_obsolete: true replaced_by: UBERON:0013583 [Term] id: UBERON:0012264 name: obsolete equine forelimb cannon bone is_obsolete: true replaced_by: UBERON:0003647 [Term] id: UBERON:0012265 name: obsolete equine hindlimb cannon bone is_obsolete: true replaced_by: UBERON:0003652 [Term] id: UBERON:0012267 name: equine splint bone def: "The splint bones sit either side of the equine cannon bone. Homologous to metapodium bones 2 or 4." [http://orcid.org/0000-0002-6601-2165] synonym: "metapodial bone 2 or 4" BROAD [] synonym: "splint bone" EXACT [NCBITaxon:9788] is_a: UBERON:0003821 ! metapodium bone property_value: editor_note "in future this class may be replaced by a more taxon-neutral class grouping metapodial bones 2 or 4" xsd:string [Term] id: UBERON:0012268 name: equine forelimb splint bone def: "A splint bone in the metacarpal region." [http://orcid.org/0000-0002-6601-2165] synonym: "forelimb splint bone" EXACT [NCBITaxon:9788] synonym: "metacarpal bone 2 or 4" BROAD [] is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0012267 ! equine splint bone is_a: UBERON:0012358 ! manual digitopodium bone property_value: editor_note "in future this class may be replaced by a more taxon-neutral class grouping metarsal bones 2 or 4" xsd:string [Term] id: UBERON:0012269 name: equine hindlimb splint bone def: "A splint bone in the metatarsal region." [http://orcid.org/0000-0002-6601-2165] synonym: "hindlimb splint bone" EXACT [NCBITaxon:9788] synonym: "metatarsal bone 2 or 4" BROAD [] is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0012267 ! equine splint bone is_a: UBERON:0012359 ! pedal digitopodium bone property_value: editor_note "in future this class may be replaced by a more taxon-neutral class grouping metacarpal bones 2 or 4" xsd:string [Term] id: UBERON:0012270 name: forestomach-glandular stomach junction def: "The distinct low fold of tissue that separates the non-glandular area of the stomach (forestomach) from the glandular stomach; the limiting ridge extends circumferentially from the large curvature of the stomach to the small curvature, just below the esophagus; at the esophagus, the course of the limiting ridge bends into a U-shape and almost surrounds the esophageal opening." [MGI:anna] subset: pheno_slim synonym: "forestomach - glandular stomach squamocolumnar junction" RELATED [] synonym: "limiting ridge of stomach" RELATED [MA:0003014] synonym: "margo plicatus" RELATED [] synonym: "squamo-columnar junction between forestomach and glandular stomach" RELATED [] synonym: "squamocolumnar junction with the glandular stomach" RELATED [] xref: EMAPA:37640 {source="MA:th"} xref: MA:0003014 xref: SCTID:67204008 is_a: UBERON:1100000 ! digestive tract junction relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0012271 name: major duodenal papilla def: "The common bile duct and the pancreatic duct together perforate the medial side of the second portion of the duodenum obliquely, some 7 to 10 cm below the pylorus, forming a structure called the major duodenal papilla. The accessory pancreatic duct sometimes pierces it about 2 cm above and slightly in front of these." [Wikipedia:Major_duodenal_papilla] subset: human_reference_atlas synonym: "greater duodenal papilla" EXACT [FMA:15074] synonym: "major papilla" RELATED [Wikipedia:Major_duodenal_papilla] synonym: "papilla duodeni major" RELATED OMO:0003011 [Wikipedia:Major_duodenal_papilla] synonym: "tubercle of Vater" EXACT [FMA:15074] xref: FMA:15074 xref: SCTID:181272007 xref: Wikipedia:Major_duodenal_papilla is_a: UBERON:0004914 ! duodenal papilla relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012272 name: minor duodenal papilla def: "The minor duodenal papilla is the opening of the accessory pancreatic duct into the duodenum. It is sometimes absent, and often nonfunctional." [Wikipedia:Minor_duodenal_papilla] synonym: "lesser duodenal papilla" EXACT [FMA:15075] synonym: "minor papilla" RELATED [Wikipedia:Minor_duodenal_papilla] synonym: "Santorini's caruncle" EXACT [FMA:15075] synonym: "Santorini's minor caruncle" EXACT [Wikipedia:Minor_duodenal_papilla] xref: FMA:15075 xref: SCTID:245390003 xref: Wikipedia:Minor_duodenal_papilla is_a: UBERON:0004914 ! duodenal papilla [Term] id: UBERON:0012273 name: periampullary region of duodenum synonym: "periampullary region" EXACT [] xref: NCIT:C60699 xref: UMLS:C1882332 {source="ncithesaurus:Periampullary_Region"} is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0012274 name: columnar epithelium def: "An epithelium that consists of columnar epithelial cells. Columnar epithelia are epithelial cells whose heights are at least four times their width. Columnar epithelia are divided into simple (or unilayered), and the rarer stratified (or multi-layered).[WP, modified]." [Wikipedia:Columnar_epithelium] xref: Wikipedia:Columnar_epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0012275 name: meso-epithelium def: "Epithelium that derives from the mesoderm. [Automatically generated definition]." [OBOL:automatic] synonym: "mesoderm-derived epithelium" EXACT [] synonym: "mesoepithelium" EXACT [] xref: FMA:86452 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0012276 name: endometrium glandular epithelium subset: human_reference_atlas synonym: "glandular part of endometrium" EXACT [FMA:86488] synonym: "uterine glands" EXACT [] synonym: "uterine glands set" EXACT [] xref: EMAPA:35308 xref: FMA:86488 xref: MA:0002732 is_a: UBERON:0004811 ! endometrium epithelium is_a: UBERON:0006929 ! glandular columnar epithelium is_a: UBERON:0007589 ! ciliated columnar oviduct epithelium relationship: part_of UBERON:0004811 ! endometrium epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012278 name: gland of nasal mucosa def: "The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands." [Wikipedia:Nasal_glands] subset: pheno_slim synonym: "glandula nasalis" EXACT OMO:0003011 [] synonym: "glandulae nasales" EXACT OMO:0003011 [] synonym: "nasal gland" BROAD [] xref: EMAPA:37871 {source="MA:th"} xref: FMA:321518 xref: NCIT:C22725 xref: SCTID:368881007 xref: UMLS:C1522269 {source="ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC"} xref: Wikipedia:Nasal_glands is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0001826 ! nasal cavity mucosa [Term] id: UBERON:0012279 name: chromaffin paraganglion def: "Small bodies containing chromaffin cells occurring outside of the adrenal medulla, most commonly near the sympathetic ganglia and in organs such as the kidney, liver, heart and gonads." [MESH:A06.224.736, Wikipedia:Paraganglion] synonym: "chromaffin body" RELATED [MESH:A06.224.736] synonym: "chromaffin paraganglia" RELATED OMO:0003004 [MESH:A06.224.736] synonym: "chromaffin paraganglion" RELATED [MESH:A06.224.736] synonym: "paraganglion" BROAD [ncithesaurus:Paraganglion] xref: CALOHA:TS-2358 xref: MESH:D010233 xref: NCIT:C94826 xref: UMLS:C0030419 {source="ncithesaurus:Paraganglion"} is_a: UBERON:0034978 ! paraganglion (generic) relationship: part_of UBERON:0010074 ! chromaffin system [Term] id: UBERON:0012281 name: perianal sebaceous gland def: "A holocrine gland that is part of the pilosebaceous unit of a hair located in the area around the anus." [ISBN:0123813611] subset: pheno_slim synonym: "circumanal gland" RELATED [MESH:A13.734] synonym: "perianal gland" RELATED [MESH:A13.734] xref: EMAPA:37936 {source="MA:th"} xref: MESH:D010481 xref: NCIT:C77620 is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0015251 {source="ISBN:0123813611"} ! modified sebaceous gland is_a: UBERON:0016852 ! skin scent gland relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0012336 ! perianal skin [Term] id: UBERON:0012282 name: mammary fat pad def: "Encapsulated adipose tissue associated with the mammary gland." [MGI:csmith] subset: pheno_slim xref: EMAPA:37901 {source="MA:th"} is_a: UBERON:0003916 ! fat pad is_a: UBERON:0004180 ! mammary gland fat [Term] id: UBERON:0012283 name: femoral fat pad def: "Encapsulated adipose tissue associated with the femur." [MP:0008905] synonym: "femoral fat depot" EXACT [MP:0008905] is_a: UBERON:0003916 ! fat pad is_a: UBERON:0004266 ! upper leg connective tissue [Term] id: UBERON:0012284 name: animal hemisphere subset: early_development synonym: "animal pole" RELATED [] synonym: "animal pole of blastomere" NARROW [] synonym: "animal pole of zygote" NARROW [] xref: AAO:0010325 xref: XAO:0000202 is_a: UBERON:0012286 ! hemisphere of embryo property_value: external_ontology_notes "the XAO class is specific to the zygote." xsd:string {external_ontology="XAO"} property_value: structure_notes "The animal pole consists of small cells that divide rapidly, in contrast with the vegetal pole below it." xsd:string {source="WP"} [Term] id: UBERON:0012285 name: vegetal hemisphere subset: early_development synonym: "vegetal pole" RELATED [] synonym: "vegetal pole of blastomere" NARROW [] synonym: "vegetal pole of zygote" NARROW [] xref: AAO:0010331 xref: XAO:0000280 is_a: UBERON:0012286 ! hemisphere of embryo property_value: structure_notes "The vegetal pole contains large yolky cells that divide very slowly, in contrast with the animal pole above it." xsd:string {source="WP"} [Term] id: UBERON:0012286 name: hemisphere of embryo def: "One of two hemispheres of the embryo at the zygote or blastula stage[WP,modified]." [https://github.com/obophenotype/uberon/issues/153, Wikipedia:Polarity_in_embryogenesis] subset: early_development synonym: "pole of embryo" RELATED [] xref: FMA:293351 xref: Wikipedia:Polarity_in_embryogenesis is_a: UBERON:0002050 ! embryonic structure property_value: curator_notes "Like many of the early_development classes in this ontology, this class requires review for its applicability across vertebrates. See the tracker item for further discussion." xsd:string property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5e/Oocyte_Poles.jpg" xsd:anyURI [Term] id: UBERON:0012287 name: Rathkes pouch epithelium def: "An epithelial sac that is part of a Rathke's pouch." [OBOL:automatic] xref: EHDAA2:0001473 xref: EMAPA:25036 is_a: UBERON:0004906 ! ectodermal part of digestive tract is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009854 ! digestive tract diverticulum is_a: UBERON:0011642 ! oral epithelium from ectoderm relationship: part_of UBERON:0005356 ! Rathke's pouch relationship: part_of UBERON:0011642 {source="EHDAA2"} ! oral epithelium from ectoderm property_value: editor_note "See https://github.com/obophenotype/uberon/issues/1305" xsd:string [Term] id: UBERON:0012288 name: centroquartal bone def: "A tarsal bone that is formed from the fusion of the central and 4th tarsal bones." [UBERON:skansa] synonym: "os centroquartale" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os naviculocuboideum" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0012289 name: fused tarsal bones 2 and 3 def: "A tarsal bone that is formed from the fusion of the 2nd and 3rd tarsal bones." [UBERON:skansa] synonym: "fused tarsals 2 and 3" EXACT [] synonym: "os cuneiforme intermediolaterale" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os tarsale II et III" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "tarsals 2+3" RELATED [] is_a: UBERON:0010721 ! distal tarsal bone [Term] id: UBERON:0012290 name: fused carpal bones 2 and 3 def: "A carpal bone that is formed from the fusion of the 2nd and 3rd distal carpal bones." [UBERON:skansa] synonym: "carpals 2+3" RELATED [] synonym: "fused carpals 2 and 3" EXACT [] is_a: UBERON:0001481 ! distal carpal bone [Term] id: UBERON:0012291 name: lateral malleolus of fibula def: "Malleolus is the name for the bony prominence on each side of the ankle." [Wikipedia:Malleolus] subset: human_reference_atlas synonym: "distal extremity of fibula" RELATED [Wikipedia:Malleolus#Lateral_malleolus] synonym: "external malleolus of fibula" RELATED [Wikipedia:Malleolus#Lateral_malleolus] synonym: "fibular malleolus" RELATED [] synonym: "lateral malleolus" BROAD [FMA:35502] synonym: "malleolar bone" NARROW SENSU [] synonym: "malleolar bone of ankle" NARROW SENSU [] xref: EMAPA:37893 {source="MA:th"} xref: FMA:35502 xref: SCTID:361795009 xref: Wikipedia:Malleolus is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004410 ! distal epiphysis of fibula relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "In bovids, the distal end of the fibula is present only as the lateral malleolus, a separate bone that articulates with the lateral side of the distal tibia." xsd:string {scope="NCBITaxon:9895", source="UBERON:skansa", seeAlso="UBERON:0004410"} [Term] id: UBERON:0012292 name: embryonic cloacal fold def: "One of the pair of mesenchymal swellings (folds) located on either side of the cloacal membrane during the indifferent stage of embryonic development; cranial to the cloacal membrane the folds unite to form the genital tubercle; caudally the folds are subdivided into urogenital folds anteriorly and anal folds posteriorly." [MP:0011836, MP:anna] comment: We presume this is distinct from AAO:0001003, an external integumentary structure - check with amphibian anatomy ontology developers. AO notes: the text def states mesenchymal swelling, EHDAA2 splits into mesenchymal and epithelial parts synonym: "cloacal fold" BROAD [EHDAA2:0004009] xref: EHDAA2:0004009 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0012469 {source="EHDAA2"} ! external anal region [Term] id: UBERON:0012293 name: anal fold def: "A slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus." [http://medical-dictionary.thefreedictionary.com/anal+fold] xref: EHDAA2:0004012 xref: EMAPA:37392 {source="MA:th"} is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure relationship: develops_from UBERON:0012292 {source="EHDAA2"} ! embryonic cloacal fold relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0012294 name: navicular fossa of spongiose part of urethra def: "The dilated terminal portion of the male spongy urethra located in the glans penis right before the external urethral orifice, also referred to as the most distal pendulous urethra; it is lined by stratified squamous, non-keratinizing epithelium; during development, the glans of the penis is initially solid but cannulates to give rise to the navicular fossa." [MP:0011838, MP:anna, Wikipedia:Navicular_fossa_of_male_urethra] subset: pheno_slim synonym: "fossa navicularis of urethra" EXACT [] synonym: "fossa navicularis urethrae" EXACT [FMA:TA] synonym: "fossa navicularis urethrae" RELATED [Wikipedia:Navicular_fossa_of_male_urethra] synonym: "fossa navicularis urethrae (pars spongiosa, urethra masculina)" EXACT [FMA:19722] synonym: "navicular fossa" EXACT [FMA:19722] synonym: "navicular fossa of urethra" EXACT [] xref: FMA:19722 xref: SCTID:362233002 xref: Wikipedia:Navicular_fossa_of_male_urethra is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001337 ! spongiose part of urethra [Term] id: UBERON:0012295 name: Guérin's valve def: "An inconstant fold or valve of mucous membrane sometimes found in the root or upper wall of the navicular fossa of the urethra." [http://www.drugs.com/dict/valve-of-navicular-fossa.html, MP:0011839, MP:anna] subset: pheno_slim synonym: "Guerin's valve" EXACT [] synonym: "Guérin's fold" EXACT [http://www.drugs.com/dict/valve-of-navicular-fossa.html] synonym: "Guérin's valvule" EXACT [MP:anna] synonym: "urethral valve of Guérin" EXACT [MP:anna] synonym: "valve of fossa navicularis of urethra" EXACT [] synonym: "valvula fossae navicularis" EXACT OMO:0003011 [MP:anna] xref: FMA:19781 xref: SCTID:367737008 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0012294 ! navicular fossa of spongiose part of urethra relationship: part_of UBERON:0012299 ! mucosa of urethra [Term] id: UBERON:0012296 name: urethral crest def: "A longitudinal mucosal fold in the dorsal wall of the urethra[MP]." [MP:0011840, MP:anna, Wikipedia:Urethral_crest] subset: pheno_slim synonym: "crista of urethra" EXACT [] synonym: "crista urethralis" EXACT OMO:0003011 [MP:anna] synonym: "urethral crista" EXACT [] xref: FMA:19718 xref: SCTID:362231000 xref: Wikipedia:Urethral_crest is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0012299 ! mucosa of urethra property_value: external_ontology_notes "in the FMA this is part of the prostatic urethra - but this leads to inconsistencies as 'urethral crest' in sex-neutral, with male and female subtypes" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012297 name: male urethral crest def: "Narrow longitudinal fold of mucosa on the posterior wall of the male urethra, extending from the uvula of the bladder through the prostatic urethra; when distended, it may serve to prevent the passage of the semen backward into the bladder; on either side of the male urethral crest is a slightly depressed fossa, the prostatic sinus, the floor of which is perforated by the orifices of the prostatic ducts from the lateral lobes of the prostate; the ducts of the middle lobe open behind the crest; at the forepart of the crest, below its summit, is a median elevation, the colliculus seminalis, upon or within the margins of which are the orifices of the prostatic utricle and the slit-like openings of the ejaculatory ducts[MP]." [MP:0011841, MP:anna] subset: pheno_slim synonym: "crista phallica" EXACT OMO:0003011 [MP:anna] synonym: "crista urethralis masculinae" EXACT OMO:0003011 [MP:anna] synonym: "urethral crest (male)" EXACT [FMA:85270] synonym: "urethral crest of male" EXACT [MP:anna] xref: FMA:85270 xref: SCTID:279470007 is_a: UBERON:0012296 ! urethral crest relationship: part_of UBERON:0005015 {source="cjm"} ! mucosa of prostatic urethra [Term] id: UBERON:0012298 name: female urethral crest def: "The conspicuous longitudinal fold of mucosa on the posterior wall of the female urethra[MP]." [MP:0011842, MP:anna] subset: pheno_slim synonym: "crista urethralis femininae" EXACT OMO:0003011 [MP:anna] synonym: "urethral crest (female)" EXACT [FMA:85271] synonym: "urethral crest of female" EXACT [MP:anna] xref: FMA:85271 xref: SCTID:279471006 is_a: UBERON:0012296 ! urethral crest relationship: part_of UBERON:0005014 {source="cjm"} ! mucosa of female urethra [Term] id: UBERON:0012299 name: mucosa of urethra def: "A mucosa that is part of a urethra." [OBOL:automatic] synonym: "mucous membrane of urethra" EXACT [FMA:76904] synonym: "tunica mucosa urethrae" EXACT [FMA:TA] synonym: "urethral mucosa" EXACT [FMA:76904] xref: EMAPA:37912 {source="MA:th"} xref: FMA:76904 xref: SCTID:362229009 is_a: UBERON:0000344 ! mucosa relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0012300 name: limb paddle def: "A transient developing limb structure that develops from the limb bud; it is a dorsoventral flattening of the limb bud structure and develops into the foot plate." [MP:0011685] subset: pheno_slim is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004347 ! limb bud [Term] id: UBERON:0012301 name: female membranous urethra def: "A membranous urethra of male or female that is part of a female urethra." [OBOL:automatic] xref: EMAPA:37537 {source="MA:th"} xref: MA:0002638 is_a: UBERON:0001336 ! membranous urethra of male or female relationship: part_of UBERON:0001334 ! female urethra [Term] id: UBERON:0012302 name: male membranous urethra def: "The shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the male urethral canal located in the deep perineal pouch and lined by pseudostratified columnar epithelium; it extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm below and behind the pubic symphysis; the membranous portion of the urethra is completely surrounded by the fibers of the sphincter urethrae membranaceae; on either side near its termination are the bulbourethral glands." [MGI:anna, MP:0011778] subset: pheno_slim synonym: "intermediate part of male urethra" RELATED [Wikipedia:Membranous_urethra] synonym: "membranous urethra" BROAD INCONSISTENT [FMA:19674] synonym: "pars intermedia urethrae masculinae" RELATED OMO:0003011 [Wikipedia:Membranous_urethra] synonym: "pars membranacea urethrae masculinae" RELATED OMO:0003011 [Wikipedia:Membranous_urethra] xref: FMA:19674 xref: MA:0002641 xref: NCIT:C33091 xref: SCTID:263343009 xref: UMLS:C0458453 {source="ncithesaurus:Membranous_Urethra"} xref: Wikipedia:Membranous_urethra is_a: UBERON:0001336 ! membranous urethra of male or female relationship: part_of UBERON:0001333 ! male urethra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png" xsd:anyURI [Term] id: UBERON:0012303 name: ureteral orifice def: "The slit-like opening of either ureter into the bladder; normally, the two ureteral orifices are placed at the posterolateral angles of the urinary bladder trigone while the internal urethral orifice is placed at its anteroinferior angle (apex); wide gaping usually indicates vesicoureteral reflux." [MP:0011783, Wikipedia:Orifice_of_ureter] subset: human_reference_atlas subset: pheno_slim synonym: "Mercier's bar" EXACT [FMA:77047] synonym: "orifice of ureter" EXACT [FMA:77047] synonym: "orificium ureteris" EXACT OMO:0003011 [MP:0011783] synonym: "ostium ureteris" EXACT OMO:0003011 [FMA:TA, MP:0011783] synonym: "ureteral meatus" EXACT [MP:0011783] synonym: "ureteral opening" EXACT [MP:0011783] synonym: "ureteric orifice" EXACT [FMA:77047, MP:0011783] synonym: "ureteric ostium" EXACT [FMA:77047] synonym: "ureterovesical orifice" EXACT [FMA:77047, MP:0011783] xref: FMA:77047 xref: NCIT:C12337 xref: SCTID:181415004 xref: Wikipedia:Orifice_of_ureter is_a: UBERON:0010418 ! urethral opening relationship: part_of UBERON:0006082 ! fundus of urinary bladder relationship: part_of UBERON:0009973 ! ureterovesical junction relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "TODO - add relationship to junction" xsd:string [Term] id: UBERON:0012304 name: nasal diverticulum def: "Caudally blind-ending cutaneous pouch lined with skin that occupies the nasoincisive notch. It's ventral and medial walls is formed by the alar fold. It's lateral wall is formed by the external nares and it's dorsal wall is formed by the straight fold. Lined by pigmented predominantly hairless skin. It has an external opening located on the dorsolateral aspect of the "true nostril". When the horse is exercising, obliteration of the nasal diverticulum greatly widens the nostrils increasing air intake[MURDOCH]." [ISBN:3899930983, MURDOCH:1367] synonym: "false nostril" RELATED [] synonym: "nasal trumpet" RELATED [ISBN:3899930983] synonym: "soft nose" RELATED [ISBN:3899930983] is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0005928 ! external naris [Term] id: UBERON:0012305 name: marginal cutaneous pouch of ear def: "A fold of skin at the caudal border of the auricle." [ISBN:9783899930993] synonym: "cutaneous marginal pouch" RELATED [] synonym: "marginal cutaneous pouch" RELATED [] is_a: UBERON:0001459 ! skin of external ear [Term] id: UBERON:0012306 name: lateral cervical lymph node def: "A cervical lymph nodes are found in proximity to an internal or external jugular vein." [https://github.com/obophenotype/uberon/issues/5, Wikipedia:Superficial_lateral_cervical_lymph_nodes] synonym: "lateral cervical node" EXACT [FMA:61232] xref: FMA:61232 xref: SCTID:167763000 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0012307 name: anterior cervical lymph node def: "The anterior cervical lymph nodes are a group of nodes found on the anterior part of the neck." [https://github.com/obophenotype/uberon/issues/5, Wikipedia:Anterior_cervical_lymph_nodes] synonym: "anterior cervical node" EXACT [] xref: FMA:61230 xref: SCTID:168259009 xref: Wikipedia:Anterior_cervical_lymph_nodes is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0012308 name: superficial lateral cervical lymph node def: "The superficial lateral cervical lymph nodes are found in proximity to the external jugular vein." [Wikipedia:Superficial_lateral_cervical_lymph_nodes] synonym: "superficial lateral cervical node" EXACT [FMA:12769] xref: FMA:12769 xref: SCTID:50679006 xref: Wikipedia:Superficial_lateral_cervical_lymph_nodes is_a: UBERON:0004870 ! superficial cervical lymph node is_a: UBERON:0012306 {source="FMA"} ! lateral cervical lymph node [Term] id: UBERON:0012309 name: superficial anterior cervical lymph node def: "The superficial anterior cervical lymph nodes are found in proximity to the anterior jugular vein." [Wikipedia:Superficial_anterior_cervical_lymph_nodes] synonym: "anterior jugular lymph node" EXACT [FMA:12776] xref: FMA:12776 xref: SCTID:22993006 xref: Wikipedia:Superficial_anterior_cervical_lymph_nodes is_a: UBERON:0004870 ! superficial cervical lymph node is_a: UBERON:0012307 {source="FMA"} ! anterior cervical lymph node [Term] id: UBERON:0012310 name: deep lateral cervical lymph node def: "The deep lateral cervical lymph nodes are found near the upper part of the internal jugular vein in the neck, lateral or posterior to the carotid sheath." [Wikipedia:Deep_lateral_cervical_lymph_nodes] synonym: "deep lateral cervical node" EXACT [FMA:12770] xref: FMA:12770 xref: SCTID:61755005 xref: Wikipedia:Deep_lateral_cervical_lymph_nodes is_a: UBERON:0004722 ! deep cervical lymph node is_a: UBERON:0012306 {source="FMA"} ! lateral cervical lymph node [Term] id: UBERON:0012311 name: deep anterior cervical lymph node def: "The deep anterior cervical lymph nodes are found near the middle cricothyroid ligament and the trachea." [Wikipedia:Deep_anterior_cervical_lymph_nodes] xref: FMA:12779 xref: SCTID:52363008 xref: Wikipedia:Deep_anterior_cervical_lymph_nodes is_a: UBERON:0004722 ! deep cervical lymph node is_a: UBERON:0012307 {source="FMA"} ! anterior cervical lymph node [Term] id: UBERON:0012312 name: maxillary process ectoderm xref: EHDAA2:0004599 xref: EMAPA:17637 xref: FMA:312685 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005868 {source="EHDAA2"} ! maxillary prominence [Term] id: UBERON:0012313 name: 1st arch maxillary ectoderm synonym: "ectoderm of maxillary component" EXACT [EMAPA:16389] xref: EHDAA2:0000039 xref: EMAPA:16389 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0007238 {source="EHDAA2"} ! 1st arch maxillary component [Term] id: UBERON:0012314 name: embryonic facial prominence def: "One of five swellings formed during the development of the face." [http://www.indiana.edu/~anat550/hnanim/face/face.html] synonym: "embryonic facial process" RELATED [] synonym: "facial primordium" RELATED [] synonym: "primordium of face" RELATED [] xref: FMA:293103 xref: SCTID:89066004 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0012315 name: incisive foramen def: "The point where the primary palate and both palatine shelves fuse." [https://missinglink.ucsf.edu/restricted/lm/CongenitalAnomalies/CleftLipPalate.html, Wikipedia:Incisive_foramen] synonym: "foramina incisiva" RELATED [Wikipedia:Incisive_foramen] synonym: "foramina incisivum" EXACT OMO:0003011 [FMA:75305, FMA:TA] synonym: "incisive foramina" RELATED [Wikipedia:Incisive_foramen] synonym: "incisive fossa" RELATED [Wikipedia:Incisive_foramen] synonym: "nasopalatine foramen" EXACT [FMA:75305] synonym: "Stenson's foramen" EXACT [FMA:75305] xref: FMA:75305 xref: Wikipedia:Incisive_foramen is_a: UBERON:0013685 ! foramen of skull [Term] id: UBERON:0012316 name: primitive palate def: "Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid." [ISBN:0073040584] synonym: "palate" RELATED [ZFA:0005509] xref: AAO:0010535 xref: TAO:0002093 xref: Wikipedia:Primitive_palate xref: ZFA:0005509 is_a: UBERON:0007375 ! roof of mouth relationship: part_of UBERON:0012072 {notes="palatal series", source="ISBN:0073040584"} ! palatal part of dermatocranium property_value: external_definition "Anatomical cluster that is the upper roof of the mouth that is underlain by bones such as the parasphenoid, vomer, metapterygoid, orbitosphenoid.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002093", ontology="TAO", source="TAO:wd"} property_value: external_definition "Roof of the mouth lined with ciliated epithelium.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010535", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "Early tetrapod possessed a primary palate that included the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones. Therapsid evolved a partial secondary palate formed by the medial extension of the premaxilla and maxilla. Mammals have a secondary palate that, in addition to extensions of the premaxilla and maxilla, includes part of the palatine bone[VHOG]" xsd:string {date_retrieved="2012-11-28", external_class="VHOG:0000362", ontology="VHOG", source="ISBN:978-0072528305 Kardong", source="http://bgee.unil.ch/"} [Term] id: UBERON:0012317 name: vagina orifice def: "The median slit located inferior and posterior to the external urethral orifice in the female; the exit for menstrual flow and birth and the entrance for the penis during sexual intercourse; the size and appearance of the vaginal orifice varies inversely with that of the hymen (G. membrane), a thin fold of mucous membrane that surrounds the vaginal orifice." [MGI:anna, MGI:csmith, MP:0001142] subset: pheno_slim synonym: "introitus" BROAD [FMA:19984] synonym: "introitus" RELATED INCONSISTENT [FMA:19984] synonym: "introitus of vagina" RELATED [MP:0001142] synonym: "opening of vagina" EXACT [] synonym: "orifice of vagina" EXACT [FMA:19984] synonym: "ostium vaginae" EXACT [FMA:TA] synonym: "vagina opening" EXACT [MP:0001142] synonym: "vaginal introitus" RELATED [] synonym: "vaginal orifice" EXACT [FMA:19984] xref: EMAPA:37983 {source="MA:th"} xref: FMA:19984 xref: Wikipedia:Vaginal_orifice is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0012318 name: anterior ethmoidal artery def: "The anterior ethmoidal artery, also anterior ethmoid artery is an artery of the head. Once branching from the ophthalmic artery, it accompanies the nasociliary nerve through the anterior ethmoidal canal to supply the anterior and middle ethmoidal cells, frontal sinus, and anterosuperior aspect of the lateral nasal wall[WP]." [Wikipedia:Anterior_ethmoidal_artery] subset: human_reference_atlas synonym: "a. ethmoidalis anterior" EXACT OMO:0003011 [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior ethmoid artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "arteria ethmoidalis anterior" EXACT OMO:0003011 [Wikipedia:Anterior_ethmoidal_artery] xref: FMA:49986 xref: SCTID:312160004 xref: Wikipedia:Anterior_ethmoidal_artery is_a: UBERON:0005193 ! ethmoidal artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012319 name: posterior ethmoidal artery def: "The posterior ethmoidal artery is an artery of the head. It is smaller than the anterior ethmoidal artery, branches off from the ophthalmic artery when it reaches the medial wall of the orbit." [Wikipedia:Posterior_ethmoidal_artery] subset: human_reference_atlas synonym: "a. ethmoidalis posterior" EXACT OMO:0003011 [Wikipedia:Posterior_ethmoidal_artery] synonym: "arteria ethmoidalis posterior" EXACT OMO:0003011 [Wikipedia:Posterior_ethmoidal_artery] synonym: "posterior ethmoidal vessel" RELATED [Wikipedia:Posterior_ethmoidal_artery] xref: FMA:49989 xref: SCTID:312161000 xref: Wikipedia:Posterior_ethmoidal_artery is_a: UBERON:0005193 ! ethmoidal artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012320 name: cervical artery def: "An artery of the neck." [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37075 {source="MA:th"} xref: NCIT:C52850 xref: UMLS:C1707349 {source="ncithesaurus:Cervical_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003502 ! neck blood vessel [Term] id: UBERON:0012321 name: deep cervical artery def: "The deep cervical artery (Profunda cervicalis) is an artery of the neck." [Wikipedia:Deep_cervical_artery] subset: human_reference_atlas synonym: "profunda cervicalis" RELATED [Wikipedia:Deep_cervical_artery] xref: FMA:10659 xref: SCTID:244223002 xref: Wikipedia:Deep_cervical_artery is_a: UBERON:0012320 ! cervical artery relationship: part_of UBERON:0035551 ! deep vasculature relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012322 name: ascending cervical artery def: "The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries." [Wikipedia:Ascending_cervical_artery] subset: human_reference_atlas synonym: "ascending cervical" RELATED [Wikipedia:Ascending_cervical_artery] xref: FMA:52489 xref: SCTID:161846001 xref: Wikipedia:Ascending_cervical_artery is_a: UBERON:0012320 ! cervical artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012324 name: transverse cervical artery def: "The transverse cervical artery (transverse artery of neck, transversa colli artery) is a branch of the thyrocervical trunk, running at a higher level than the suprascapular artery." [Wikipedia:Transverse_cervical_artery] subset: human_reference_atlas synonym: "cervical artery" RELATED [MA:0001936, Wikipedia:Transverse_cervical_artery] synonym: "cervical transverse artery" RELATED [Wikipedia:Transverse_cervical_artery] synonym: "descending branch of the transverse cervical" RELATED [Wikipedia:Transverse_cervical_artery] synonym: "transversalis artery colli" RELATED [Wikipedia:Transverse_cervical_artery] synonym: "transversalis colli artery" RELATED [Wikipedia:Transverse_cervical_artery] synonym: "transverse cervical" RELATED [Wikipedia:Transverse_cervical_artery] synonym: "transverse cervical vessels" RELATED [Wikipedia:Transverse_cervical_artery] xref: FMA:10664 xref: MA:0001936 xref: SCTID:244224008 xref: Wikipedia:Transverse_cervical_artery is_a: UBERON:0012320 ! cervical artery relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "Unclear if MA class belongs here or in parent" xsd:string {external_ontology="MA"} [Term] id: UBERON:0012325 name: retrocerebral complex def: "Corpora allata with Corpora cardiaca form the retrocerebral complex, a neurosecretory organ." [BTO:0001803] comment: will be ceded to arthropod anatomy ontology xref: BTO:0001803 xref: FBbt:00001718 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002368 {source="BTO"} ! endocrine gland [Term] id: UBERON:0012326 name: gubernacular bulb def: "The caudal, swollen portion of the gubernaculum." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] synonym: "bulb of gubernaculum" NARROW [] synonym: "pars infravaginalis gubernaculi" NARROW [PMID:11997885] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0008843 ! gubernaculum testis property_value: development_notes "Hrabovszky et al propose the bulb is the growing end of the elongating gubernaculum, analogous to the growth of a limb bud[PMID:11997885]" xsd:string property_value: taxon_notes "In rodents, during inguinoscrotal descent the gubernaculum regresses and the bulb prolapses, forming the vaginal process[ISBN:0123971756]" xsd:string [Term] id: UBERON:0012327 name: pearly penile papule def: "Small saliences on the ridge of the glans of the male genital organs." [Wikipedia:Hirsuties_coronae_glandis] synonym: "hirsuties coronae glandis" EXACT OMO:0003004 [Wikipedia:Hirsuties_coronae_glandis] synonym: "hirsutoid papilloma" EXACT [Wikipedia:Hirsuties_coronae_glandis] synonym: "preputial gland of penis" RELATED INCONSISTENT [FMA:19653] xref: FMA:19653 xref: Wikipedia:Hirsuties_coronae_glandis is_a: UBERON:0000479 ! tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001332 {source="FMA"} ! prepuce of penis relationship: present_in_taxon NCBITaxon:9606 {source="Wikipedia:Preputial_gland"} [Term] id: UBERON:0012328 name: penile spine def: "Keratinized structures along the glans and/or shaft of their penis that may be involved in sexual selection." [Wikipedia:Penile_spines] synonym: "penis spike" RELATED [] synonym: "penis spine" RELATED [] xref: Wikipedia:Penile_spines is_a: UBERON:0000479 ! tissue is_a: UBERON:0005156 ! reproductive structure relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0000989 ! penis relationship: present_in_taxon NCBITaxon:40674 [Term] id: UBERON:0012329 name: keratinized stratified squamous epithelium def: "Keratinized stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesize and accumulate keratin." [FMA:45568, Wikipedia:Stratified_squamous_epithelium#Keratinized] synonym: "epithelium stratificatum squamosum cornificatum" EXACT OMO:0003011 [FMA:45568] xref: FMA:45568 xref: Wikipedia:Stratified_squamous_epithelium#Keratinized is_a: UBERON:0006915 ! stratified squamous epithelium [Term] id: UBERON:0012330 name: nasal-associated lymphoid tissue def: "The lymphocytic cell population present in the mucosa of the nasopharyngeal duct of some animals." [ncithesaurus:Nasal-Associated_Lymphoid_Tissue] synonym: "NALT" EXACT OMO:0003000 [Wikipedia:Mucosa-associated_lymphoid_tissue#Categorisation] synonym: "naso-pharyngeal lymphoid tissue" EXACT [FMA:79771] xref: FMA:79771 xref: MA:0003030 xref: NCIT:C77659 xref: UMLS:C2698431 {source="ncithesaurus:Nasal-Associated_Lymphoid_Tissue"} is_a: UBERON:0001962 ! gut-associated lymphoid tissue relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0012331 name: mesosalpinx def: "A serous layer that is part of the peritoneal lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine (fallopian) tube to the ovary. It is made up of epithelial cells of mesothelium and a mesh of serous membrane lining." [doi:10.1016/B978-0-12-801238-3.64401-X, PMID:29763118, Wikipedia:Mesosalpinx] subset: human_reference_atlas synonym: "fallopian tube mesosalpinx" EXACT [] synonym: "mesentery of fallopian tube" EXACT [PMID:29763118] synonym: "mesentery of uterine tube" EXACT [PMID:29763118] synonym: "serous layer of fallopian tube" EXACT [doi:10.1016/B978-0-12-801238-3.64401-X] xref: FMA:19808 xref: SCTID:279900000 xref: Wikipedia:Mesosalpinx is_a: UBERON:0002095 ! mesentery relationship: part_of UBERON:0012332 ! broad ligament of uterus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012332 name: broad ligament of uterus def: "A broad fold of peritoneum that extends from the side of the uterus to the wall of the pelvis." [MESH:A02.513.170, Wikipedia:Broad_ligament_of_the_uterus] subset: human_reference_atlas synonym: "broad ligament" RELATED [MESH:A02.513.170] synonym: "broad uterine ligament" EXACT [FMA:16516] synonym: "ligamentum latum uteri" RELATED OMO:0003011 [] xref: FMA:16516 xref: MESH:D001956 xref: NCIT:C12318 xref: SCTID:362723009 xref: UMLS:C0006205 {source="ncithesaurus:Broad_Ligament"} xref: Wikipedia:Broad_ligament_of_the_uterus is_a: UBERON:0000211 {source="MESH"} ! ligament relationship: part_of UBERON:0002095 ! mesentery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012333 name: ovarian bursa def: "A pouch formed by the mesosalpinx and the mesovarium that encloses the infundibulum of the uterine tube and the ovary." [http://medical-dictionary.thefreedictionary.com/ovarian] comment: Ovaries of some animals are surrounded by a thin membranous sac, the bursa, and are isolated from the peritoneal cavity. The bursa is continuous with the orifice of the oviduct. The bursa is not continuous in other mammals (eg., farm animals and human beings); ovaries of these species can be exposed within the abdomen, and thus ectopic pregnancy is possible[http://www.uwyo.edu/wjm/repro/femanat.htm] subset: pheno_slim xref: MA:0003036 xref: SCTID:250080006 is_a: UBERON:0034696 ! fold of peritoneum [Term] id: UBERON:0012334 name: navicular bursa def: "A fluid-filled sac that lies between the navicular bone and the deep digital flexor muscle." [http://medical-dictionary.thefreedictionary.com/navicular+bursa] synonym: "bursa podotrochlearis" EXACT [] xref: SCTID:370660009 is_a: UBERON:0003668 ! synovial bursa relationship: part_of UBERON:0002470 ! autopod region [Term] id: UBERON:0012335 name: navicular bursa of manus def: "A navicular bursa that is part of a manus." [OBOL:automatic] synonym: "bursa podotrochlearis manus" EXACT [http://medical-dictionary.thefreedictionary.com/bursa+podotrochlearis+manus] synonym: "navicular bursa of forelimb" EXACT [] xref: SCTID:370736002 is_a: UBERON:0012334 ! navicular bursa relationship: part_of UBERON:0002398 ! manus [Term] id: UBERON:0012336 name: perianal skin def: "A zone of skin that is part of the area surrounding the anus." [http://orcid.org/0000-0002-6601-2165] synonym: "skin of perianal area" EXACT [] xref: EMAPA:37715 {source="MA:th"} xref: FMA:29350 xref: MA:0003046 xref: SCTID:181522009 is_a: UBERON:0001415 ! skin of pelvis relationship: part_of UBERON:0001415 {source="MA"} ! skin of pelvis [Term] id: UBERON:0012337 name: cauda equina def: "The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space." [Wikipedia:Cauda_equina] synonym: "filum terminale" RELATED [MESH:A08.800.800.720.725.150] xref: EMAPA:37468 {source="MA:th"} xref: FMA:52590 xref: MA:0003045 xref: MESH:D002420 xref: NCIT:C12689 xref: neuronames:1626 xref: SCTID:263377004 xref: UMLS:C0007458 {source="ncithesaurus:Cauda_Equina"} xref: Wikipedia:Cauda_equina is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0009623 {source="MESH"} ! spinal nerve root [Term] id: UBERON:0012343 name: navicular bursa of pes def: "A navicular bursa that is part of a pes." [OBOL:automatic] synonym: "bursa podotrochlearis pes" EXACT [] synonym: "navicular bursa of hindlimb" EXACT [] is_a: UBERON:0012334 ! navicular bursa relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0012344 name: holocrine gland def: "Any exocrine gland whose secretion consists of its own disintegrated secretory cells along with its secretory product; holocrine secretions are produced in the cytoplasm of the cell and released by the rupture of the plasma membrane, which destroys the cell and results in the secretion of the product into the lumen." [MP:0013543] subset: pheno_slim xref: BTO:0002325 xref: MA:0003042 xref: Wikipedia:Holocrine is_a: UBERON:0002365 {source="MA", source="MP"} ! exocrine gland [Term] id: UBERON:0012348 name: autopod pad def: "Pigmented, keratinised, hairless epidermis covering subcutaneous, collagenous, and adipose tissue." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Paw#Common_characteristics] synonym: "paw pad" RELATED [] is_a: UBERON:0015790 ! autopod skin property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Paw_and_pads.jpg" xsd:anyURI property_value: editor_note "See https://github.com/obophenotype/uberon/issues/1305" xsd:string [Term] id: UBERON:0012349 name: digital pad def: "A thick spongy structure at the base of the autopod, centred over the flexor surfaces of the distal interphalangeal joints." [MURDOCH:611] comment: May be fused synonym: "acropodial pad" EXACT [] synonym: "acropodium pad" EXACT [] synonym: "digital cushion" RELATED [] synonym: "digital pads" RELATED OMO:0003004 [] synonym: "interdigital pad" EXACT [] is_a: UBERON:0012348 ! autopod pad relationship: part_of UBERON:0012354 ! acropodium region [Term] id: UBERON:0012350 name: carpal pad def: "An autopod pad found in the carpal region of a manus. Used for additional traction when stopping or descending a slope in digitigrade species." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001518 ! skin of wrist is_a: UBERON:0013622 ! manual autopod pad [Term] id: UBERON:0012351 name: urachal lumen def: "An anatomical space that is enclosed by a urachus." [OBOL:automatic] synonym: "urachus lumen" EXACT [] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002068 ! urachus [Term] id: UBERON:0012352 name: mesangial matrix def: "Extracellular matrix secreted by intraglomerular mesangial cells." [MP:0011338] subset: pheno_slim synonym: "extracellular mesangial matrix" EXACT [MP:0011338] xref: EMAPA:37907 {source="MA:th"} is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0002319 ! mesangium [Term] id: UBERON:0012353 name: fin skeleton def: "Skeletal subdivision consisting of all the skeletal elements in a single fin." [https://orcid.org/0000-0002-6601-2165] synonym: "skeleton of fin" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0008897 ! fin [Term] id: UBERON:0012354 name: acropodium region def: "The segment of the autopod that is distal to the metapodial region and consists of the digits." [https://orcid.org/0000-0002-6601-2165] synonym: "acropodial limb segment" EXACT [] synonym: "acropodial region" EXACT [] synonym: "acropodial segment of autopod" EXACT [] synonym: "set of digits" EXACT [] is_a: UBERON:0012139 ! segment of autopod relationship: part_of UBERON:0012140 ! digitopodium region property_value: curator_notes "class refers to an entire limb segment, not just the bones" xsd:string [Term] id: UBERON:0012355 name: manual acropodium region def: "The segment of the manus that is distal to the metacarpal region and consists of the manual digits (fingers)." [https://orcid.org/0000-0002-6601-2165] synonym: "acropodial hindlimb segment" EXACT [] synonym: "acropodial region of manus" EXACT [] synonym: "acropodial segment of manus" EXACT [] synonym: "all fingers" EXACT [] synonym: "anterior acropodium" RELATED [] synonym: "anterior acropodium region" EXACT [] synonym: "anterior acropodium segment of limb" EXACT [] synonym: "digiti manus" EXACT [FMA:TA] synonym: "digits of hand" EXACT [FMA:75592] synonym: "fingers including thumb" EXACT [FMA:75592] synonym: "fingers set" EXACT [FMA:75592] synonym: "manual acropodium" RELATED [] synonym: "manual acropodium region" EXACT [] synonym: "manual acropodium segment of limb" EXACT [] synonym: "set of digits of hand" EXACT [FMA:75592] synonym: "set of fingers" EXACT [FMA:75592] xref: FMA:75592 is_a: UBERON:0005451 ! segment of manus is_a: UBERON:0012354 ! acropodium region relationship: part_of UBERON:0012141 ! manual digitopodium region property_value: curator_notes "class refers to an entire limb segment, not just the bones" xsd:string [Term] id: UBERON:0012356 name: pedal acropodium region def: "The segment of the pes that is distal to the metatarsal region and consists of the pedal digits (toes)." [https://orcid.org/0000-0002-6601-2165] synonym: "acropodial forelimb segment" EXACT [] synonym: "acropodial region of pes" EXACT [] synonym: "acropodial segment of pes" EXACT [] synonym: "all toes" EXACT [] synonym: "digits of foot" EXACT [FMA:70664] synonym: "pedal acropodium region" EXACT [] synonym: "set of toes" EXACT [FMA:70664] synonym: "toes" RELATED [FMA:70664] synonym: "toes set" EXACT [FMA:70664] xref: FMA:70664 xref: SCTID:362835004 is_a: UBERON:0005445 ! segment of pes is_a: UBERON:0012354 ! acropodium region relationship: part_of UBERON:0012142 ! pedal digitopodium region property_value: curator_notes "class refers to an entire limb segment, not just the bones" xsd:string [Term] id: UBERON:0012357 name: digitopodium bone def: "A bone that is part of a the digitopodium skeleton - i.e. the acropodial skeleton or the metapodial skeleton." [https://orcid.org/0000-0002-6601-2165] synonym: "digit bone" RELATED COMPARATIVE_PREFERRED [] is_a: UBERON:0011250 ! autopod bone relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern relationship: part_of UBERON:0012150 ! skeleton of digitopodium [Term] id: UBERON:0012358 name: manual digitopodium bone def: "A bone that is part of a the manual digitopodium skeleton - i.e. the fingers or the metacarpal skeleton." [https://orcid.org/0000-0002-6601-2165] synonym: "bone of forelimb digitopodium" EXACT [] xref: SCTID:265809008 is_a: UBERON:0005897 ! manus bone is_a: UBERON:0012357 ! digitopodium bone relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium [Term] id: UBERON:0012359 name: pedal digitopodium bone def: "A bone that is part of a the pedal digitopodium skeleton - i.e. the toes or the metatarsal skeleton." [https://orcid.org/0000-0002-6601-2165] synonym: "bone of hindlimb digitopodium" EXACT [] is_a: UBERON:0005899 ! pes bone is_a: UBERON:0012357 ! digitopodium bone relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium [Term] id: UBERON:0012360 name: bone of jaw def: "A bone element that is part of a jaw region." [OBOL:automatic] synonym: "jaw bone" EXACT [] xref: EMAPA:35453 xref: MA:0003130 xref: SCTID:369003004 is_a: UBERON:0003462 ! facial bone is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001708 ! jaw skeleton property_value: editor_note "Do not manually classify under here - bones are automatically classified" xsd:string [Term] id: UBERON:0012361 name: internal anal region xref: EHDAA2:0004588 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region [Term] id: UBERON:0012363 name: thyroid follicle epithelium def: "An epithelium that is part of a thyroid follicle." [OBOL:automatic] synonym: "epithelium of thyroid follicle" EXACT [FMA:68783] synonym: "thryoid epithelium" BROAD [] synonym: "thyroid follicle epithelium" EXACT [FMA:68783] synonym: "wall of thyroid follicle" EXACT [FMA:68783] xref: FMA:68783 is_a: UBERON:0000484 {source="FMA"} ! simple cuboidal epithelium is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0007689 ! thyroid diverticulum relationship: part_of UBERON:0005305 ! thyroid follicle relationship: present_in_taxon NCBITaxon:7955 {notes="As in mammals, the thyroid follicles of the zebrafish are usually round to oval, with low cuboidal epithelium. In contrast to mammals, the follicles are not concentrated together but are diffusely distributed along the ventral aorta.", source="DOI:10.1177/0192623311409597"} [Term] id: UBERON:0012364 name: colloid of thyroid follicle def: "Portion of substance contained within the thyroid follicle lumen. Contains prohormone thyroglobulin." [https://orcid.org/0000-0002-6601-2165] synonym: "thyroid colloid" EXACT [FMA:68831] synonym: "thyroid follicle colloid" EXACT [FMA:68831] xref: FMA:68831 is_a: UBERON:0000463 {source="FMA"} ! organism substance relationship: part_of UBERON:0005305 ! thyroid follicle [Term] id: UBERON:0012367 name: muscle layer of intestine def: "A muscle layer that is part of an intestine." [OBOL:automatic] synonym: "intestinal muscularis propria" EXACT [FMA:15697] synonym: "muscularis externa of intestine" EXACT [FMA:15697] synonym: "smooth muscle of intestine" RELATED [] xref: FMA:15697 is_a: UBERON:0018261 ! muscular coat of digestive tract relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine [Term] id: UBERON:0012368 name: circular muscle layer of muscular coat def: "The inner layer of the muscular coat." [BTO:0005213] synonym: "circular muscle layer" RELATED [] synonym: "circular smooth muscle" RELATED [BTO:0005213] synonym: "inner muscularis" RELATED [FMA:62899] synonym: "inner muscularis layer" RELATED [FMA:62899] xref: BTO:0005213 xref: FMA:62899 is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: part_of UBERON:0006660 ! muscular coat [Term] id: UBERON:0012369 name: longitudinal muscle layer of muscular coat def: "The outer layer of the muscular coat." [BTO:0005214] synonym: "longitudinal muscle layer" RELATED [] synonym: "longitudinal smooth muscle" RELATED [BTO:0005214] synonym: "outer muscularis" RELATED [FMA:62900] synonym: "outer muscularis layer" RELATED [FMA:62900] xref: BTO:0005214 xref: FMA:62900 is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: part_of UBERON:0006660 ! muscular coat [Term] id: UBERON:0012373 name: sympathetic nerve plexus def: "A nerve plexus that is part of a sympathetic nervous system." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:37617 {source="MA:th"} xref: MA:0001160 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000013 ! sympathetic nervous system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012374 name: subserosal plexus def: "The subserous part of the enteric plexus of autonomic nerves." [http://medical-dictionary.thefreedictionary.com/subserous+plexus] synonym: "subserous nerve plexus" EXACT [FMA:77598] synonym: "subserous plexus" EXACT [FMA:77598] synonym: "tela subserosa" EXACT [] xref: FMA:77598 xref: SCTID:110699000 xref: Wikipedia:Tela_subserosa is_a: UBERON:0000429 ! enteric plexus relationship: part_of UBERON:0012375 ! subserosa [Term] id: UBERON:0012375 name: subserosa def: "A layer of tissue between the muscularis and serosa." [Wikipedia:Subserosa] comment: Contains nerves, blood vessels, lymphatics and lymph nodes subset: human_reference_atlas xref: FMA:45636 xref: NCIT:C94494 xref: SCTID:2255006 xref: UMLS:C0225334 {source="ncithesaurus:Subserosa"} xref: Wikipedia:Subserosa is_a: UBERON:0004923 ! organ component layer relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012376 name: retromolar triangle def: "The small area behind the wisdom teeth." [ncithesaurus:Retromolar_Trigone, Wikipedia:Retromolar_space] synonym: "retromolar pad" RELATED [] synonym: "retromolar trigone" RELATED [] xref: CALOHA:TS-2353 xref: FMA:75784 xref: NCIT:C54223 xref: SCTID:245830008 xref: UMLS:C0226920 {source="ncithesaurus:Retromolar_Trigone"} is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001828 ! gingiva property_value: editor_note "requires verification" xsd:string [Term] id: UBERON:0012377 name: muscle layer of jejunum def: "A muscular coat that is part of a jejunum." [OBOL:automatic] subset: human_reference_atlas synonym: "jejunal smooth muscle" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "muscularis externa of jejunum" EXACT [FMA:14951] synonym: "muscularis propria of jejunum" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "smooth muscle of jejunum" RELATED [https://orcid.org/0000-0002-6601-2165] xref: FMA:14951 is_a: UBERON:0011201 ! muscle layer of small intestine relationship: part_of UBERON:0002115 ! jejunum relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012378 name: muscle layer of urinary bladder def: "A muscular coat that is part of a urinary bladder." [OBOL:automatic] subset: human_reference_atlas synonym: "bladder muscular coat" EXACT [] synonym: "muscle layer of urinary bladder" EXACT [FMA:15930] synonym: "muscular coat of bladder" EXACT [FMA:15930] synonym: "muscular coat of urinary bladder" EXACT [FMA:15930] synonym: "muscular layer of bladder" EXACT [FMA:15930] synonym: "muscular layer of urinary bladder" EXACT [FMA:15930] synonym: "tunica musculari vesicae" EXACT [FMA:TA] synonym: "tunica muscularis (vesica urinaria)" EXACT [FMA:TA] xref: FMA:15930 xref: NCIT:C32206 xref: UMLS:C1288327 {source="ncithesaurus:Bladder_Muscular_Coat"} is_a: UBERON:0006660 ! muscular coat relationship: part_of UBERON:0001256 {source="FMA"} ! wall of urinary bladder relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012398 name: large intestine smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a large intestine smooth muscle." [OBOL:automatic] subset: human_reference_atlas synonym: "circular muscle layer of segment of large intestine" RELATED [FMA:81160] xref: EMAPA:37558 {source="MA:th"} xref: FMA:81160 xref: MA:0001548 is_a: UBERON:0012368 ! circular muscle layer of muscular coat relationship: part_of UBERON:0004220 ! large intestine smooth muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012399 name: large intestine smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a large intestine smooth muscle." [OBOL:automatic] subset: human_reference_atlas synonym: "longitudinal muscle layer of zone of large intestine" RELATED [FMA:63637] xref: EMAPA:37559 {source="MA:th"} xref: FMA:63637 xref: MA:0001549 is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: part_of UBERON:0004220 ! large intestine smooth muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012401 name: small intestine smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a small intestine smooth muscle." [OBOL:automatic] synonym: "circular layer of small intestine muscularis propria" EXACT [FMA:14935] synonym: "circular muscle coat of small intestine" EXACT [FMA:14935] synonym: "circular muscle layer of small intestine" EXACT [FMA:14935] synonym: "circular muscle of small intestine" EXACT [FMA:14935] synonym: "short pitch helicoidal muscle layer of small intestine" EXACT [FMA:14935] synonym: "stratum circulare (tunica muscularis)(intestinum tenue)" EXACT [FMA:14935] synonym: "stratum circulare tunicae muscularis intestini tenuis" EXACT OMO:0003011 [FMA:14935, FMA:TA] synonym: "stratum helicoidale brevis gradus tunicae muscularis intestini tenuis" EXACT [FMA:TA] xref: EMAPA:37562 {source="MA:th"} xref: FMA:14935 xref: MA:0001560 xref: SCTID:54658003 is_a: UBERON:0012368 ! circular muscle layer of muscular coat relationship: part_of UBERON:0004239 ! small intestine smooth muscle relationship: part_of UBERON:0011201 {source="FMA"} ! muscle layer of small intestine [Term] id: UBERON:0012402 name: small intestine smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a small intestine smooth muscle." [OBOL:automatic] synonym: "long pitch helicoidal muscle layer of small intestine" EXACT [FMA:14936] synonym: "longitudinal layer of small intestine muscularis propria" EXACT [FMA:14936] synonym: "longitudinal muscle coat of small intestine" EXACT [FMA:14936] synonym: "longitudinal muscle layer of small intestine" EXACT [FMA:14936] synonym: "longitudinal muscle of small intestine" EXACT [FMA:14936] synonym: "stratum helicoidale longi gradus tunicae muscularis intestini tenuis" EXACT [FMA:TA] synonym: "stratum longitudinale (tunica muscularis) (intestinum tenue)" EXACT [FMA:14936] synonym: "stratum longitudinale tunicae muscularis intestini tenuis" EXACT OMO:0003011 [FMA:14936, FMA:TA] xref: EMAPA:37563 {source="MA:th"} xref: FMA:14936 xref: MA:0001561 xref: SCTID:59150006 is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: part_of UBERON:0004239 ! small intestine smooth muscle relationship: part_of UBERON:0011201 {source="FMA"} ! muscle layer of small intestine [Term] id: UBERON:0012416 name: respiratory system arterial smooth muscle subset: human_reference_atlas xref: EMAPA:37567 {source="MA:th"} xref: MA:0001802 is_a: UBERON:0004297 ! respiratory system blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012418 name: respiratory system venous smooth muscle def: "A smooth muscle tissue that is part of a respiratory system venous blood vessel." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:37586 {source="MA:th"} xref: MA:0001812 is_a: UBERON:0004696 ! venous system smooth muscle relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012419 name: taenia coli def: "The taeniae coli (also teniae coli) are three separate longitudinal ribbons of smooth muscle on the outside of the ascending, transverse, descending and sigmoid colons. They are visible, and can be seen just below the serosa or fibrosa. They are the Mesocolic, Free and Omental Coli. The teniae coli contracts length wise to produce the haustra, the bulges in the colon. The bands converge at the root of the vermiform appendix and the rectum. These bands correspond to the outer layer of the muscularis externa, in other portions of the digestive tract." [Wikipedia:Taenia_coli] subset: human_reference_atlas synonym: "longitudinal band of large intestine muscularis" EXACT [FMA:15041] synonym: "longitudinal bands" RELATED [Wikipedia:Taenia_coli] synonym: "taeniae coli" RELATED [Wikipedia:Taenia_coli] synonym: "tenia coli" RELATED [Wikipedia:Taenia_coli] synonym: "teniae coli" RELATED [Wikipedia:Taenia_coli] xref: FMA:15041 xref: SCTID:362160001 xref: Wikipedia:Taenia_coli is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: part_of UBERON:0011198 {source="FMA"} ! muscle layer of large intestine relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012420 name: coprodeum def: "Most proximal cloacal compartment, into which the large intestine empties[Kardong]." [ISBN:0073040584] synonym: "cloacal coprodeum" EXACT [] synonym: "coprodaeum" EXACT [] synonym: "coprodeal portion of cloaca" EXACT [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000162 ! cloaca property_value: has_relational_adjective "coprodeal" xsd:string [Term] id: UBERON:0012421 name: urodeum def: "Cloacal compartment into which the urogenital system empties[Kardong]." [ISBN:0073040584] synonym: "cloacal urodeum" EXACT [] synonym: "urodaeum" EXACT [] synonym: "urodeal portion of cloaca" EXACT [] xref: SCTID:81191004 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000162 ! cloaca property_value: has_relational_adjective "urodeal" xsd:string property_value: taxon_notes "This is where the urates collect. In the hen the oviduct opens into this compartment." xsd:string {source="http://caiquesite.com/glossary.htm"} [Term] id: UBERON:0012422 name: secretion of crop def: "Nutritional fluid secreted by the crop in some species[Kardong]." [ISBN:0073040584] synonym: "crop milk" RELATED [ISBN:0073040584] is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0012423 name: layer of microvilli def: "A layer of microvilli, Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments[GO,modified]." [GO:0005902, Wikipedia:Microvillus] synonym: "microvilli" RELATED [MESH:A11.284.180.565] synonym: "microvillus" RELATED [FMA:67296] xref: FMA:67296 xref: MESH:D008871 xref: NCIT:C33112 xref: UMLS:C0026049 {source="ncithesaurus:Microvillus"} xref: Wikipedia:Microvillus is_a: UBERON:0005162 ! multi cell part structure property_value: external_ontology_notes "FMA class represents an individual microvillus." xsd:string {external_ontology="FMA"} property_value: function_notes "a wide variety of physiological and cellular functions including absorption, secretion, cellular adhesion, and mechanotransduction" xsd:string property_value: function_notes "increases the surface area of a cell lining whilst minimizing increase in volume" xsd:string [Term] id: UBERON:0012424 name: brush border layer def: "The microvilli-covered surface of simple cuboidal epithelium and simple columnar epithelium cells found in certain locations of the body; mainly in the small an large intestines and kidneys." [Wikipedia:Brush_border] comment: Note - this anatomical structure differs from the cellular component GO_0005903 brush border (defined as: the dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell). synonym: "brush border" RELATED [FMA:70977] synonym: "brush border membrane" RELATED [Wikipedia:Brush_border] xref: FMA:70977 xref: Wikipedia:Brush_border is_a: UBERON:0012423 ! layer of microvilli relationship: part_of UBERON:0000490 ! unilaminar epithelium property_value: external_ontology_notes "FMA class represents an individual microvillus" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012425 name: striated border microvillus layer def: "A microvillus layer that is striated and found in the intestine." [http://medical-dictionary.thefreedictionary.com/striated+border, http://orcid.org/0000-0002-6601-2165] synonym: "striated border" RELATED [FMA:70978] xref: FMA:70978 xref: NCIT:C33634 is_a: UBERON:0012423 ! layer of microvilli relationship: part_of UBERON:0000160 ! intestine property_value: external_ontology_notes "FMA class represents an individual microvillus" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012426 name: short microvillus layer def: "A layer of microvilli covering lymphocytes." [http://orcid.org/0000-0002-6601-2165] synonym: "short microvillus" RELATED [FMA:70979] xref: FMA:70979 is_a: UBERON:0012423 ! layer of microvilli property_value: editor_note "consider ceding to GO" xsd:string property_value: external_ontology_notes "FMA class represents an individual microvillus" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0012427 name: intestinal brush border layer def: "A brush border layer that is part of a intestine." [OBOL:automatic] comment: Consider merging into UBERON:0012425 synonym: "brush border microvillus layer of intestine" EXACT [] synonym: "intestinal brush border" EXACT [] is_a: UBERON:0012424 ! brush border layer relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0012428 name: proximal convoluted tubule brush border def: "A brush border layer that is part of a proximal tubule in the kidney." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Microvillus#Function] synonym: "kidney brush border layer" BROAD [] synonym: "proximal tubule brush border layer" BROAD [] is_a: UBERON:0012424 ! brush border layer relationship: part_of UBERON:0001287 ! proximal convoluted tubule property_value: function_notes "the microvilli in this layer can act as mechanosensors. They sense the fluid flow in the tubule lumen and convert this information via biochemical responses into reabsorption" xsd:string [Term] id: UBERON:0012429 name: hematopoietic tissue def: "Blood-forming tissue, consisting of reticular fibers and cells." [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] synonym: "haemopoietic tissue" EXACT [FMA:14073] synonym: "hematopoietic tissue" EXACT [FMA:14073] synonym: "hemopoietic tissue" EXACT [FMA:14073] synonym: "textus haemopoieticus" EXACT [FMA:14073] xref: CALOHA:TS-2142 xref: FMA:14073 xref: NCIT:C13051 xref: UMLS:C0229619 {source="ncithesaurus:Hematopoietic_Tissue"} is_a: UBERON:0034769 {source="FMA"} ! lymphomyeloid tissue relationship: part_of UBERON:0002390 {source="defitional"} ! hematopoietic system property_value: taxon_notes "Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue" xsd:string [Term] id: UBERON:0012430 name: tunica fibrosa of eyeball def: "The sclera and cornea form the fibrous tunic of the bulb of the eye; the sclera is opaque, and constitutes the posterior five-sixths of the tunic; the cornea is transparent, and forms the anterior sixth." [Wikipedia:Fibrous_tunic_of_eyeball] synonym: "corneosclera" RELATED [Wikipedia:Fibrous_tunic_of_eyeball] synonym: "fibrous layer of eyeball" EXACT [FMA:58102] synonym: "fibrous tunic" RELATED [Wikipedia:Fibrous_tunic_of_eyeball] synonym: "tunica fibrosa" BROAD [] xref: FMA:58102 xref: SCTID:361318005 xref: Wikipedia:Fibrous_tunic_of_eyeball is_a: UBERON:0004923 {source="FMA"} ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010230 ! eyeball of camera-type eye relationship: present_in_taxon NCBITaxon:7955 {source="DOI:10.1177/0192623311409597"} [Term] id: UBERON:0012437 name: epithelial-mesenchymal boundary def: "An anatomical line that adjacent_to a epithelium and adjacent_to a mesenchyme." [OBOL:automatic] is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0012438 name: blastema of regenerating fin/limb def: "A blastema that is part of a regenerating fin/limb." [OBOL:automatic] xref: ZFA:0001270 is_a: UBERON:0005306 ! blastema relationship: part_of UBERON:2001269 ! regenerating fin/limb [Term] id: UBERON:0012439 name: blastema of regenerating digit tip def: "A blastema that is part of a distal segment of digit." [OBOL:automatic] synonym: "digit blastema" RELATED [] is_a: UBERON:0005306 ! blastema relationship: part_of UBERON:0009551 ! distal segment of digit [Term] id: UBERON:0012441 name: endothelium of peritubular capillary def: "An endothelium that is part of a peritubular capillary." [OBOL:automatic] subset: human_reference_atlas synonym: "peritubular capillary endothelium" EXACT [] synonym: "peritubular endothelium" BROAD [] is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004819 ! kidney epithelium relationship: part_of UBERON:0005272 ! peritubular capillary relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012442 name: epiploic foramen def: "The passage of communication, or foramen, between the general cavity (of the abdomen), and the omental bursa." [Wikipedia:Omental_foramen] synonym: "aditus to lesser sac" EXACT [FMA:14711] synonym: "epiploic foramen" RELATED [Wikipedia:Omental_foramen] synonym: "epiploic foramen of Winslow" EXACT [Wikipedia:Omental_foramen] synonym: "foramen epiploicum" RELATED [Wikipedia:Omental_foramen] synonym: "foramen of Winslow" EXACT [FMA:14711] synonym: "foramen of winslow" RELATED [Wikipedia:Omental_foramen] synonym: "foramen omentale" EXACT [FMA:TA] synonym: "foramen omentale (epiploicum)" EXACT [FMA:14711] synonym: "omental foramen" EXACT [FMA:14711] xref: EHDAA2:0000447 xref: FMA:14711 xref: SCTID:264473006 xref: Wikipedia:Omental_foramen is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0012443 name: row of scales synonym: "set of scales" RELATED [] is_a: UBERON:0034926 ! anatomical row [Term] id: UBERON:0012444 name: gastropege def: "A single row of large ventral scales in snakes that aid locomotion." [http://en.wikivet.net] synonym: "row of ventral scales" RELATED [] is_a: UBERON:0012443 ! row of scales [Term] id: UBERON:0012446 name: obsolete cloacal spur def: "Retained pelvic vestiges found in birds. They are generally used in courtship and are more pronounced in males than females." [http://en.wikivet.net] comment: Obsoleted as lacks support in literature is_obsolete: true [Term] id: UBERON:0012447 name: podotheca def: "A horny sheath covering the lower leg of some birds." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0012448 name: Herbst's corpuscle def: "The Corpuscles of Herbst or Herbst corpuscles are a nerve-ending similar to the Pacinian corpuscle, in the mucous membrane of the tongue, in pits on the beak and in other parts of the bodies of birds. It differs from the Pacinian corpuscle in being smaller, in its capsules being more closely approximated, and in that the axis-cylinder in the central clear space is coated with a continuous row of nuclei. In many wading birds, a large number of Herbst corpuscles are found embedded in pits on the mandibles that are believed to enable birds to sense prey under wet sand or soil." [Wikipedia:Corpuscles_of_Herbst] synonym: "corpuscles of Herbst" RELATED [Wikipedia:Corpuscles_of_Herbst] synonym: "Herbst corpuscle" RELATED [Wikipedia:Corpuscles_of_Herbst] xref: Wikipedia:Corpuscles_of_Herbst is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle [Term] id: UBERON:0012449 name: mechanoreceptor def: "A sensory receptor that responds to mechanical pressure or distortion." [Wikipedia:Mechanoreceptor] comment: Normally there are four main types in glabrous skin: Pacinian corpuscles, Meissner's corpuscles, Merkel's discs, and Ruffini endings. There are also mechanoreceptors in hairy skin, and the hair cells in the cochlea are the most sensitive mechanoreceptors, transducing air pressure waves into nerve signals sent to the brain. In the periodontal ligament, there are some mechanoreceptors, which allow the jaw to relax when biting down on hard objects; the mesencephalic nucleus is responsible for this reflex xref: FMA:86587 xref: MESH:D008465 xref: NCIT:C13821 xref: Wikipedia:Mechanoreceptor is_a: UBERON:0012451 ! sensory receptor [Term] id: UBERON:0012450 name: Meissner's corpuscle def: "A type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors." [Wikipedia:Meissner%27s_corpuscle] comment: located in papillary layer of dermis in glabrous skin[ISBN:9780849388118] synonym: "Dogiel's end bulb" RELATED [ISBN:9780849388118] synonym: "meisner's corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner corpuscle end-organ" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner's corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner's corpuscles" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "messier corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "messner's corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "Ruffini's end bulb" RELATED [ISBN:9780849388118] synonym: "tactile corpuscles of Wagner and Meissner" RELATED [Wikipedia:Meissner%27s_corpuscle] xref: FMA:83605 xref: NCIT:C13171 xref: SCTID:41421000 xref: UMLS:C0205831 {source="ncithesaurus:Meissner_Corpuscle"} xref: Wikipedia:Meissner%27s_corpuscle is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0012451 name: sensory receptor def: "A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one." [Wikipedia:Sensory_receptor] synonym: "peripheral ending of sensory neuron" EXACT [FMA:84650] synonym: "sensory nerve ending" RELATED [MESH:A08.800.550.700] xref: FMA:84650 xref: MESH:D011984 xref: NCIT:C13819 xref: SCTID:70402007 xref: UMLS:C0682664 {source="ncithesaurus:Somatosensory_Receptor"} xref: Wikipedia:Sensory_receptor is_a: UBERON:0012453 ! nerve ending [Term] id: UBERON:0012453 name: nerve ending def: "Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS." [MESH:A08.800.550] synonym: "nerve ending" RELATED [MESH:A08.800.550] xref: MESH:D009411 is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0001027 ! sensory nerve property_value: curator_notes "this class and subclasses may be ceded to GO" xsd:string [Term] id: UBERON:0012456 name: Merkel nerve ending def: "Mechanoreceptors found in the skin and mucosa of vertebrates that provide touch information to the brain. The information they provide are those regarding pressure and texture. Each ending consists of a Merkel cell in close apposition with an enlarged nerve terminal." [Wikipedia:Merkel_nerve_ending] synonym: "Merkel's disc" EXACT [FMA:83606] synonym: "Merkel's disk" EXACT [] synonym: "Merkel's receptor" EXACT [] synonym: "Merkel's tactile disc" EXACT [] xref: FMA:83606 xref: NIF_Subcellular:FMA_83606 xref: SCTID:9317004 xref: Wikipedia:Merkel_nerve_ending is_a: UBERON:0012449 ! mechanoreceptor relationship: part_of UBERON:0002199 ! integument property_value: taxon_notes "In mammals, Merkel nerve endings have a wide distribution. Merkel nerve endings are found in the basal layer of glabrous and hairy skin, in hair follicles, and in oral and anal mucosa. In humans, Merkel cells (along with Meissner's corpuscles) occur in the superficial skin layers, and are found clustered beneath the ridges of the fingertips that make up fingerprints. In hairy skin, Merkel nerve endings are clustered into specialized epithelial structures called 'touch domes' or 'hair disks'. (Some other types of mechanoreceptors, such as Pacinian corpuscles and Ruffini endings, are found primarily in subcutaneous tissue.) Merkel receptors are also located in the mammary glands. Wherever they are found, the epithelium is arranged to optimize the transfer of pressure to the ending." xsd:string {source="WP"} [Term] id: UBERON:0012457 name: Ruffini nerve ending def: "An encapsulated nerve receptor present in subpapillary dermis and deep dermis of hairy and glabrous skin." [ISBN:9780849388118, Wikipedia:Bulbous_corpuscle] synonym: "bulbous corpuscle" RELATED [Wikipedia:Ruffini_ending] synonym: "corpuscle of ruffini" RELATED [Wikipedia:Ruffini_ending] synonym: "corpusculum sensorium fusiforme" EXACT OMO:0003011 [Wikipedia:Ruffini_ending] synonym: "Ruffini corpuscle" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini corpuscle end-organ" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini corpuscles" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini endings" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's corpuscle" EXACT [MP:0000989] synonym: "Ruffini's corpuscles" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's end organ" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's ending" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's organs" RELATED [Wikipedia:Ruffini_ending] xref: FMA:83602 xref: FMA:84004 xref: NCIT:C13175 xref: SCTID:53140000 xref: UMLS:C0035943 {source="ncithesaurus:Ruffinis_Corpuscle"} xref: Wikipedia:Bulbous_corpuscle is_a: UBERON:8900000 {source="FMA"} ! sensory corpuscle relationship: part_of UBERON:0002199 ! integument property_value: curator_notes "there is some debate as to its existence[ISBN:9780849388118]" xsd:string property_value: external_ontology_notes "MP says subcutaneous tissue of digits; NCITA says hypodermis" xsd:string {external_ontology="MP"} [Term] id: UBERON:0012458 name: antler velvet def: "Highly vascular skin called velvet that covers the antler whilst it grows, supplying oxygen and nutrients to the growing bone." [Wikipedia:Velvet_(antler_covering)] synonym: "velvet of antler" EXACT [] xref: SCTID:47282002 xref: Wikipedia:Velvet_(antler_covering) is_a: UBERON:0001084 ! skin of head relationship: part_of UBERON:0006971 ! antler [Term] id: UBERON:0012459 name: antler pedicle def: "Attachment point for antler on skull." [Wikipedia:Antler#Occurrence_and_function, Wikipedia:Pedicle_(cervidae)] xref: Wikipedia:Pedicle_(cervidae) is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006971 ! antler [Term] id: UBERON:0012462 name: proctodeum portion of cloaca def: "Most distal cloacal compartment; function is copulation and in some species develops a penis[Kardong]." [ISBN:0073040584] synonym: "proctodeal wall of cloaca" RELATED [] synonym: "proctodeum" RELATED INCONSISTENT [] xref: SCTID:298233001 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000162 ! cloaca property_value: has_relational_adjective "proctodeal" xsd:string property_value: taxon_notes "For most birds this is where the phallus is located, but male parrots do not have a phallus. The Bursa of Fabricius is located here." xsd:string {source="http://caiquesite.com/glossary.htm"} [Term] id: UBERON:0012463 name: cloacal lumen def: "An anatomical space that is enclosed by a cloaca." [OBOL:automatic] synonym: "cloaca lumen" EXACT [ZFA:0000330] synonym: "cloacal chamber" EXACT [ZFA:0000330] xref: TAO:0000330 xref: ZFA:0000330 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000162 ! cloaca relationship: part_of UBERON:0012465 {source="cjm"} ! lumen of terminal part of digestive tract property_value: external_ontology_notes "the ZFA class belongs here as it is an anatomical space. See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/102/" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0012464 name: cloacal vent def: "The opening of the cloacal chamber to the outside of the organism. Birds maintain a single cloacal opening throughout their lives." [http://orcid.org/0000-0002-6601-2165] synonym: "cloacal opening" EXACT [] synonym: "cloacal orifice" RELATED [] synonym: "vent" RELATED [] is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012465 name: lumen of terminal part of digestive tract def: "An anatomical space that is enclosed by a terminal part of digestive tract." [OBOL:automatic] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006866 ! terminal part of digestive tract property_value: taxon_notes "includes the cloacal lumen, in species where this is present" xsd:string [Term] id: UBERON:0012466 name: extraembryonic cavity synonym: "extraembryonic cavities" RELATED OMO:0003004 [EHDAA2:0000472] xref: EHDAA2:0000472 xref: EMAPA:16054 xref: VHOG:0000767 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0016887 ! entire extraembryonic component [Term] id: UBERON:0012467 name: enclosed anatomical space def: "An anatomical space with no opening to another space or to the exterior." [AEO:0000222] synonym: "closed anatomical space" EXACT [] xref: AEO:0000222 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0012468 name: anal tooth def: "Triangular calcified papillae (often five) placed radially around the anus of some Holothuriidae." [http://species-identification.org/species.php?species_group=nasc&selected=definitie&menuentry=woordenlijst&record=Anal%20teeth, https://orcid.org/0000-0002-6601-2165, https://www.karger.com/Article/Pdf/142845] synonym: "anal teeth" EXACT OMO:0003004 [] synonym: "calcified anal papilla" RELATED [] synonym: "cloacal tooth" RELATED [] synonym: "perianal tooth" RELATED [] is_a: UBERON:0003913 ! tooth-like structure relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0012469 name: external anal region xref: EHDAA2:0004589 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region [Term] id: UBERON:0012470 name: wheel papilla comment: the terminal papillae superficially resemble the 'anal teeth' of non-apodid holothurians. is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0012471 name: hepatogastric ligament def: "Ligament extending between the liver and stomach." [Wikipedia:Hepatogastric_ligament] synonym: "gastro-hepatic ligament" EXACT [] synonym: "gastrohepatic ligament" EXACT [FMA:16520] synonym: "hepato-gastric ligament" EXACT [] synonym: "ligamentum hepatogastricum" EXACT OMO:0003011 [Wikipedia:Hepatogastric_ligament] xref: FMA:16520 xref: NCIT:C32737 xref: SCTID:260825001 xref: UMLS:C0230232 {source="ncithesaurus:Hepatogastric_Ligament"} xref: Wikipedia:Hepatogastric_ligament is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0005602 ! dorsal mesogastrium relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum [Term] id: UBERON:0012472 name: hepatoduodenal ligament def: "The hepatoduodenal ligament is the portion of the lesser omentum extending between the porta hepatis of the liver and the superior part of the duodenum." [Wikipedia:Hepatoduodenal_ligament] synonym: "ligamentum hepatoduodenale" EXACT [Wikipedia:Hepatoduodenal_ligament] xref: FMA:16521 xref: SCTID:362706000 xref: Wikipedia:Hepatoduodenal_ligament is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0012473 name: oral cirrus def: "Small tentacle-like structure surrounding the mouth; they act as sensory devices and as a filter for the water passing into the body." [Wikipedia:Lancelet#Physical_features] synonym: "buccal cilia" EXACT OMO:0003004 [] synonym: "buccal cillium" RELATED [] synonym: "buccal cirri" EXACT OMO:0003004 [] synonym: "buccal cirrus" EXACT [] synonym: "buccal tentacle" EXACT [] synonym: "lophophore tentacle" NARROW [NCBITaxon:1206795] synonym: "oral cilia" EXACT OMO:0003004 [] synonym: "oral cillium" RELATED [] synonym: "oral cirri" EXACT OMO:0003004 [] synonym: "oral tentacle" EXACT [] xref: BTO:0001357 is_a: UBERON:0000062 ! organ relationship: never_in_taxon NCBITaxon:7776 relationship: present_in_taxon NCBITaxon:7568 relationship: present_in_taxon NCBITaxon:7737 property_value: curator_notes "this class groups a chordate (branchiostome) and lophotrochozoan (brachiopod) structure; these should probably be split" xsd:string [Term] id: UBERON:0012474 name: hepatic cecum def: "A ventral evagination extending anteriorly in the mid-portion of the intestine in Amphioxi." [BTO:0002855] synonym: "hepatic caecum" EXACT [BTO:0002855] xref: BTO:0002855 is_a: UBERON:0009854 ! digestive tract diverticulum relationship: part_of UBERON:0000160 {source="BTO"} ! intestine relationship: present_in_taxon NCBITaxon:7737 property_value: taxon_notes "may be analagous to liver, Romer says not homologous" xsd:string [Term] id: UBERON:0012475 name: skeleton of pectoral complex def: "The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "bones of upper limb" RELATED [FMA:24139] synonym: "ossa membri superioris" RELATED [FMA:TA] synonym: "pectoral complex skeleton" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "set of bones of upper limb" RELATED [FMA:24139] synonym: "skeleton of anterior limb/fin and girdle" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "upper limb skeleton" RELATED [FMA:24139] xref: FMA:24139 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0010708 {source="FMA"} ! pectoral complex [Term] id: UBERON:0012476 name: skeleton of pelvic complex def: "The collection of all skeletal elements in a pelvic complex - i.e. the combination of free limb or fin plus pelvic girdle." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "bones of lower limb" RELATED [FMA:24140] synonym: "lower limb skeleton" RELATED [FMA:24140] synonym: "ossa membri inferioris" RELATED [FMA:TA] synonym: "pelvic complex skeleton" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "set of bones of lower limb" RELATED [FMA:24140] synonym: "skeleton of posterior limb/fin and girdle" RELATED [https://orcid.org/0000-0002-6601-2165] xref: FMA:24140 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0010709 {source="FMA"} ! pelvic complex [Term] id: UBERON:0012477 name: dorsal part of neck def: "The posterior region of the neck, including the suboccipital region." [MP:0012723] subset: pheno_slim synonym: "back of neck" EXACT [FMA:24189] synonym: "hindneck" RELATED [] synonym: "nape" BROAD [BTO:0000957] synonym: "nape of neck" EXACT [] synonym: "neck back" EXACT [FMA:24189] synonym: "nucha" EXACT [FMA:24189] synonym: "nuchal region" EXACT [FMA:24189] synonym: "posterior cervical region" EXACT [FMA:24189] synonym: "posterior neck region" EXACT [FMA:24189] synonym: "posterior part of neck" EXACT [FMA:24189] synonym: "regio cervicalis posterior" EXACT [FMA:TA] xref: BTO:0000957 xref: FMA:24189 xref: SCTID:182326009 xref: SCTID:304036007 is_a: UBERON:0005434 {source="FMA"} ! cervical region relationship: part_of UBERON:0001137 {source="FMA"} ! dorsum property_value: has_relational_adjective "nuchal" xsd:string [Term] id: UBERON:0012478 name: cloacal gland def: "A gland that is part of a cloaca." [OBOL:automatic] is_a: UBERON:0003408 ! gland of digestive tract relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012479 name: urodeal gland def: "A gland that is part of a urodeum." [OBOL:automatic] synonym: "urodaeal gland" EXACT [] is_a: UBERON:0012478 ! cloacal gland relationship: part_of UBERON:0012421 ! urodeum [Term] id: UBERON:0012480 name: cloacal mucosa alt_id: UBERON:0003349 def: "A mucosa that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] synonym: "cloaca mucosa" EXACT [] synonym: "cloaca mucosa of organ" EXACT [] synonym: "cloaca mucous membrane" EXACT [] synonym: "cloaca organ mucosa" EXACT [] synonym: "cloacal mucous membrane" EXACT [] synonym: "mucosa of cloaca" EXACT [] synonym: "mucosa of organ of cloaca" EXACT [] synonym: "mucous membrane of cloaca" EXACT [] synonym: "organ mucosa of cloaca" EXACT [] is_a: UBERON:0000344 ! mucosa relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012481 name: cloacal epithelium def: "An epithelium that is part of a cloaca." [http://orcid.org/0000-0002-6601-2165] synonym: "cloacal endoderm" RELATED [EMAPA:27577] xref: EMAPA:27577 xref: EMAPA:36070 xref: ZFA:0005783 is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0000162 ! cloaca property_value: external_definition "cloacal epithelium (cle) (syn: cloacal endoderm) (TS17-TS20): the cloacal epithelium is derived from endoderm and lines the cloacal cavity. It is marked by Shh and Cdh1 and lines the cloacal lumen. The cloacal epithelium gives rise to the urogenital sinus epithelium, hindgut epithelium and the urethral plate epithelium." xsd:string {source="EMAPA:27577"} [Term] id: UBERON:0012482 name: submucosa of cloaca def: "A submucosa that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] synonym: "cloaca submucosa" EXACT [] synonym: "cloacal submucosa" EXACT [] is_a: UBERON:0018257 ! submucosa of digestive tract relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012483 name: serosa of cloaca def: "A serous membrane that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] synonym: "cloaca serosa" EXACT [] synonym: "cloaca serous membrane" EXACT [] synonym: "cloacal serosa" EXACT [] synonym: "serous membrane of cloaca" EXACT [] synonym: "visceral peritoneum of cloaca" EXACT [] is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012485 name: cloacal villus synonym: "cloacal villi" EXACT OMO:0003004 [] is_a: UBERON:0012423 ! layer of microvilli relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012486 name: muscle layer of cloaca def: "A muscular coat that is part of a cloaca." [OBOL:automatic] synonym: "muscularis externa of cloaca" EXACT [] synonym: "smooth muscle of cloaca" RELATED [] is_a: UBERON:0018261 ! muscular coat of digestive tract relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012487 name: vaginal sphincter def: "A sphincter muscle that is part of a vagina." [OBOL:automatic] synonym: "sphincter of vagina" EXACT [] is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0005156 ! reproductive structure relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0000996 ! vagina relationship: present_in_taxon NCBITaxon:8509 [Term] id: UBERON:0012488 name: muscle layer of duodenum def: "A muscular coat that is part of a duodenum." [OBOL:automatic] synonym: "duodenal muscularis propria" EXACT [FMA:14944] synonym: "muscularis externa of duodenum" EXACT [FMA:14944] synonym: "muscularis propria of duodenum" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "smooth muscle of duodenum" RELATED [https://orcid.org/0000-0002-6601-2165] xref: FMA:14944 xref: SCTID:362147007 is_a: UBERON:0011201 ! muscle layer of small intestine relationship: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0012489 name: muscle layer of colon def: "A muscular coat that is part of a colon." [OBOL:automatic] subset: human_reference_atlas synonym: "colon muscularis" RELATED [MA:0003198] synonym: "colonic muscularis propria" EXACT [FMA:14986] synonym: "muscular coat of colon" EXACT [FMA:14986] synonym: "muscular layer of colon" EXACT [FMA:14986] synonym: "muscularis externa of colon" EXACT [FMA:14986] synonym: "tunica muscularis coli" EXACT [FMA:TA] xref: EMAPA:27383 xref: FMA:14986 xref: MA:0003198 xref: SCTID:362158003 is_a: UBERON:0011198 ! muscle layer of large intestine relationship: part_of UBERON:0001155 ! colon relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012490 name: muscle layer of anal canal def: "A muscular coat that is part of a anal canal." [OBOL:automatic] synonym: "anal canal muscularis propria" EXACT [] synonym: "anal muscularis propria" EXACT [FMA:15708] synonym: "muscular coat of anal canal" EXACT [] synonym: "muscular layer of anal canal" EXACT [] synonym: "muscularis externa of anal canal" EXACT [] synonym: "muscularis propria of anal canal" EXACT [FMA:15708] xref: FMA:15708 xref: SCTID:362171000 is_a: UBERON:0011198 ! muscle layer of large intestine relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0012494 name: muscularis mucosae of duodenum def: "A muscularis mucosa that is part of a duodenum." [OBOL:automatic] subset: human_reference_atlas synonym: "lamina muscularis of duodenal mucous membrane" EXACT [FMA:15059] synonym: "lamina muscularis of duodenum" EXACT [] xref: EMAPA:27243 xref: EMAPA:27259 xref: FMA:15059 xref: MA:0003210 xref: MA:0003211 xref: SCTID:37457002 is_a: UBERON:0001210 ! muscularis mucosae of small intestine relationship: part_of UBERON:0000320 {source="FMA"} ! duodenal mucosa relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012497 name: muscularis mucosae of rectum def: "A muscularis mucosa that is part of a rectum." [OBOL:automatic] synonym: "lamina muscularis of rectal mucosa" EXACT [FMA:15687] synonym: "lamina muscularis of rectal mucous membrane" EXACT [FMA:15687] xref: EMAPA:27093 xref: FMA:15687 xref: SCTID:53420003 is_a: UBERON:0001239 ! muscularis mucosae of large intestine is_a: UBERON:0018112 ! rectum smooth muscle tissue relationship: part_of UBERON:0003346 {source="FMA"} ! mucosa of rectum [Term] id: UBERON:0012498 name: serosa of appendix def: "A serous membrane that is part of a vermiform appendix." [OBOL:automatic] subset: human_reference_atlas synonym: "appendiceal serosa" EXACT [FMA:14997] synonym: "appendix serosa" EXACT [FMA:14997] synonym: "serosa of vermiform appendix" EXACT [FMA:14997] synonym: "visceral peritoneum of vermiform appendix" EXACT [FMA:14997] xref: FMA:14997 xref: SCTID:22488003 is_a: UBERON:0001209 ! serosa of large intestine relationship: part_of UBERON:0001154 ! vermiform appendix relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012499 name: serosa of fallopian tube def: "A serous membrane that is part of a fallopian tube." [OBOL:automatic] synonym: "serosa of oviduct" EXACT [FMA:18316] synonym: "serosa of uterine tube" EXACT [] synonym: "serous coat of uterine tube" EXACT [FMA:18316] synonym: "tunica serosa (tuba uterina)" EXACT [FMA:18316] synonym: "tunica serosa tubae uterinae" EXACT [FMA:TA] synonym: "uterine tubal serosa" EXACT [FMA:18316] synonym: "uterine tube serosa" EXACT [FMA:18316] xref: FMA:18316 xref: SCTID:259593000 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003889 ! fallopian tube [Term] id: UBERON:0012503 name: serosa of fundus of stomach def: "A serous membrane that is part of a fundus of stomach." [OBOL:automatic] synonym: "visceral peritoneum of fundus of stomach" EXACT [FMA:17073] xref: EMAPA:27157 xref: FMA:17073 is_a: UBERON:0001201 ! serosa of stomach relationship: part_of UBERON:0001160 ! fundus of stomach relationship: part_of UBERON:0001201 {source="FMA"} ! serosa of stomach [Term] id: UBERON:0012504 name: adventitia of esophagus def: "An adventitia that is part of a esophagus." [OBOL:automatic] synonym: "adventitia of oesophagus" EXACT [FMA:63006] synonym: "adventitious layer of esophagus" EXACT [FMA:63006] synonym: "esophageal adventitia" EXACT [FMA:63006] synonym: "esophagus adventitia" EXACT [FMA:63006] synonym: "tunica adventitia (esophagus)" EXACT [FMA:63006] synonym: "tunica adventitia oesophageae" EXACT [FMA:TA] xref: FMA:63006 xref: SCTID:85950006 is_a: UBERON:0005742 ! adventitia relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0012520 name: forelimb epitrochlearis muscle def: "The superficial-most muscle of the anterior surface of the arm is the epitrochlearis. It has no homolog in humans." [http://biology.clc.uc.edu] synonym: "epitrochlearis" EXACT [BTO:0000423] synonym: "wing epitrochlearis muscle" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: BTO:0000423 is_a: UBERON:0003662 {source="BTO"} ! forelimb muscle relationship: never_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012615 name: umbilical smooth muscle def: "A smooth muscle tissue that is part of a umbilical cord." [OBOL:automatic] xref: BTO:0001847 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005292 ! extraembryonic tissue relationship: part_of UBERON:0002331 ! umbilical cord [Term] id: UBERON:0012621 name: muscle of Aristotle's lantern def: "Any muscle organ that is part of a Aristotle's lantern." [OBOL:automatic] synonym: "lantern muscle" EXACT [BTO:0001924] xref: BTO:0001924 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0008253 ! Aristotle's lantern [Term] id: UBERON:0012641 name: body of tubeworm comment: to be ceded to polychaete ontology xref: http://www.pbs.org/wgbh/nova/abyss/life/images/tubeworm.gif is_a: UBERON:0000468 ! multicellular organism [Term] id: UBERON:0012642 name: vestimentum muscle def: "The vestimentum is a muscle that the tubeworm uses to anchro itself in the tube. Generates new tube material." [BTO:0002492, https://orcid.org/0000-0002-6601-2165] synonym: "vestimentum" EXACT [BTO:0002492] xref: BTO:0002492 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0012641 ! body of tubeworm [Term] id: UBERON:0012643 name: plume def: "Vascularized tip of their free end of a tubeworm which is an organ for exchanging compounds with the environment." [Wikipedia:Giant_tube_worm#Body_structure] xref: BTO:0002480 xref: Wikipedia:Giant_tube_worm#Body_structure is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0012641 ! body of tubeworm [Term] id: UBERON:0012644 name: trophosome def: "An organ of dark green-brown spongy tissue in a tubeworm which is a host to symbiotic microbes." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0012641 ! body of tubeworm property_value: external_definition "A specialised organ found in deep-sea tube worms populating hydrothermal vent environments that is colonised by chemosynthetic bacteria which supply the host worm with organic compounds. The term may be applied to similar organs in other worms[ENVO:01000165]." xsd:string {source="ENVO:01000165"} [Term] id: UBERON:0012645 name: opisthosome def: "Organ at the distal end of a tubeworm. Helps anchor the tubeworm." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0012641 ! body of tubeworm [Term] id: UBERON:0012646 name: tubeworm tube comment: Tube consists of chitin proteoglycan/protein complex is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0012641 ! body of tubeworm [Term] id: UBERON:0012648 name: ampulla of fallopian tube def: "The ampulla is the second portion of the uterine tube. It is an intermediate dilated portion, which curves over the ovary. It is the most common site of human fertilization. The word ampulla is from the Latin for flask." [Wikipedia:Ampulla_of_uterine_tube] subset: human_reference_atlas synonym: "ampulla of fallopian tube" RELATED [Wikipedia:Ampulla_of_uterine_tube] synonym: "ampulla of oviduct" EXACT [FMA:18305] synonym: "ampulla of the fallopian tube" RELATED [Wikipedia:Ampulla_of_uterine_tube] synonym: "ampulla of uterine tube" EXACT [] synonym: "ampulla of uterine tube" RELATED [BTO:0004285] synonym: "ampulla tubae uterinae" EXACT OMO:0003011 [FMA:18305, FMA:TA] synonym: "uterine tube ampulla" EXACT [FMA:18305] xref: BTO:0004285 xref: FMA:18305 xref: SCTID:245497001 xref: Wikipedia:Ampulla_of_uterine_tube is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0012649 name: anococcygeus muscle def: "One of a pair of thin sheets of smooth muscle inserting on the rectum, having a tendinous origin largely on sacral vertebrae." [PMID:9071980] synonym: "AcM" RELATED OMO:0003000 [PMID:9071980] synonym: "anococcygeus" EXACT [MA:0001533] xref: BTO:0005150 xref: EMAPA:37396 {source="MA:th"} xref: MA:0001533 is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle [Term] id: UBERON:0012650 name: gastroduodenal junction def: "An anatomical junction that connects a stomach and connects a duodenum." [OBOL:automatic] xref: FMA:17046 xref: SCTID:264014000 is_a: UBERON:1100000 ! digestive tract junction relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0012651 name: mucosa of gastroduodenal junction def: "A mucosa that is part of a gastroduodenal junction." [OBOL:automatic] synonym: "gastroduodenal mucosa" EXACT [BTO:0005415] xref: BTO:0005415 is_a: UBERON:0001199 ! mucosa of stomach relationship: part_of UBERON:0001199 ! mucosa of stomach relationship: part_of UBERON:0012650 ! gastroduodenal junction [Term] id: UBERON:0012652 name: colorectum def: "The subdivision of the digestive tract that consists of the colon and the rectum." [http://orcid.org/0000-0002-6601-2165] xref: BTO:0001613 xref: CALOHA:TS-1298 xref: NCIT:C54189 xref: UMLS:C1711309 {source="ncithesaurus:Colorectal_Region"} is_a: UBERON:0004921 {order="non-canonical", source="cjm"} ! subdivision of digestive tract relationship: part_of UBERON:0000059 ! large intestine property_value: has_relational_adjective "colorectal" xsd:string [Term] id: UBERON:0012925 name: bronchial bud xref: BTO:0001641 is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud relationship: develops_from UBERON:0005597 ! lung primordium [Term] id: UBERON:0013067 name: colorectal mucosa alt_id: UBERON:0019041 def: "A mucosa that is part of a colorectum." [OBOL:automatic] xref: BTO:0002435 is_a: UBERON:0001207 ! mucosa of large intestine relationship: part_of UBERON:0012652 ! colorectum [Term] id: UBERON:0013068 name: palatine torus def: "A bony protuberance sometimes found on the hard palate at the junction of the intermaxillary suture and the transverse palatine suture." [http://palaeos.com/vertebrates/glossary/glossaryP.html] synonym: "crista palatina" RELATED [FMA:59201] synonym: "torus palatinus" EXACT OMO:0003011 [http://palaeos.com/vertebrates/glossary/glossaryP.html] xref: FMA:59201 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001682 ! palatine bone property_value: terminology_notes "In accordance with the N. A. 'Torus palatinus' denotes a median low ridge on the oral surface of the Palatum osseum. Crista palatina, however, refers in the N. A. to a transverse crest, which is present among domestic mammals only occasionally in the pig. See Os palatinum.[NOMINA ANATOMICA VETERINARIA (2005)]" xsd:string [Term] id: UBERON:0013069 name: popliteal area def: "A depression on the ventral side of the femur, at the knee joint, between the condyles." [http://orcid.org/0000-0002-6601-2165] synonym: "knee pit" RELATED [Wikipedia:Popliteal_fossa] synonym: "popliteal fossa" EXACT [FMA:22525] synonym: "popliteal region" RELATED [] synonym: "popliteal space" RELATED [] xref: FMA:22525 xref: http://palaeos.com/vertebrates/glossary/images/popliteal.gif xref: NCIT:C103222 xref: SCTID:362791002 xref: Wikipedia:Popliteal_fossa is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:0013070 name: prepatagium def: "A roughly triangular flap of skin on the wing of a bird or pterosaur which fills the space bounded by the humerus and ulna." [http://palaeos.com/vertebrates/glossary/glossaryPo.html] is_a: UBERON:0010858 ! inter limb-segment region relationship: part_of UBERON:0010856 ! patagium [Term] id: UBERON:0013073 name: rattle comment: The rattle is composed of a series of hollow, interlocked segments made of keratin, which are created by modifying the scales that cover the tip of the tail. synonym: "snake rattle" EXACT [] xref: SCTID:10734004 xref: Wikipedia:Rattlesnake#Rattle is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0013074 name: cornual diverticulum def: "An extension of the frontal sinus into the horn." [http://cal.vet.upenn.edu/projects/grossanat/largemenu/rheadsinlr.htm] synonym: "cornual sinus" EXACT [] xref: SCTID:53994006 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001760 ! frontal sinus [Term] id: UBERON:0013075 name: venom gland duct def: "A duct that is part of a venom gland." [OBOL:automatic] synonym: "duct of venom gland" EXACT [] synonym: "venom duct" RELATED [BTO:0001855] xref: BTO:0001855 xref: SCTID:38124005 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0011579 ! venom gland property_value: external_ontology_notes "BTO class may refer to invertebrate gland" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0013076 name: snake venom def: "Solutions or mixtures of toxic and nontoxic substances elaborated by snake (Ophidia) salivary glands for the purpose of killing prey or disabling predators and delivered by grooved or hollow fangs. They usually contain enzymes, toxins, and other factors." [MESH:D24.185.965.850, Wikipedia:Snake_venom] synonym: "venenosalivary venom" RELATED [] xref: MESH:D012910 xref: Wikipedia:Snake_venom is_a: UBERON:0007113 ! venom [Term] id: UBERON:0013078 name: venom-injecting tooth def: "A fang that is used to inject venom into prey, through either a tube or a groove." [https://orcid.org/0000-0002-6601-2165] synonym: "fang" RELATED [] synonym: "grooved fang" RELATED [] synonym: "tubular fang" RELATED [] synonym: "tubular tooth" RELATED [] is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0013106 name: elapid venom def: "Venoms from snakes of the family Elapidae, including cobras, kraits, mambas, coral, tiger, and Australian snakes. The venoms contain polypeptide toxins of various kinds, cytolytic, hemolytic, and neurotoxic factors, but fewer enzymes than viper or crotalid venoms. Many of the toxins have been characterized." [MESH:D24.185.965.850.325] synonym: "elapid venom" RELATED [MESH:D24.185.965.850.325] xref: MESH:D004546 is_a: UBERON:0013076 {source="MESH"} ! snake venom [Term] id: UBERON:0013110 name: hydrophid venom def: "Venoms of sea snakes, Hydrophiinae, found around Pacific islands. The venoms contain fewer enzymes and more neuro- or myotoxins than land snakes. The neurotoxic proteins are similar to elapid small, short, or type I neurotoxins, some of which have been characterized." [MESH:D24.185.965.850.480] synonym: "hydrophid venom" RELATED [MESH:D24.185.965.850.480] synonym: "sea snake venom" RELATED [MESH:D24.185.965.850.480] is_a: UBERON:0013076 {source="MESH"} ! snake venom [Term] id: UBERON:0013112 name: viper venom def: "Venoms from snakes of the viperid family. They tend to be less toxic than elapid or hydrophid venoms and act mainly on the vascular system, interfering with coagulation and capillary membrane integrity and are highly cytotoxic. They contain large amounts of several enzymes, other factors, and some toxins." [MESH:D24.185.965.850.960] synonym: "cerastes venom" RELATED [MESH:D24.185.965.850.960] synonym: "egyptian sand viper venom" RELATED [MESH:D24.185.965.850.960] synonym: "viper venom" RELATED [MESH:D24.185.965.850.960] synonym: "viperotoxin" RELATED [MESH:D24.185.965.850.960] xref: MESH:D014757 is_a: UBERON:0013076 {source="MESH"} ! snake venom [Term] id: UBERON:0013113 name: angular/surangular bone def: "Bone formed from the fusion of angular and surangular bones. Found in snakes." [ISBN:0073040584] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: UBERON:0013114 name: compressor glandulae muscle def: "A prominent compressor muscle found in poisonous snakes that originates in the lower jaw, sweeps around the venom gland, and inserted on the gland's surface. The muscles acts to squeeze the gland and release venom." [ISBN:0073040584] comment: only found in crotaline snakes, and has a spotty distribution within that group is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0013116 ! venom gland musculature [Term] id: UBERON:0013115 name: pterygoideus glandulae muscle is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0013116 ! venom gland musculature [Term] id: UBERON:0013116 name: venom gland musculature is_a: UBERON:0008229 ! craniocervical region musculature relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0013118 name: sulcus of brain def: "A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals." [https://github.com/obophenotype/uberon/issues/315, Wikipedia:Sulcus_(neuroanatomy)] subset: cumbo synonym: "cerebral sulci" EXACT OMO:0003004 [DHBA:10610] synonym: "cerebral sulci" RELATED [NeuroNames:1208] synonym: "cerebral sulcus" RELATED [NeuroNames:1208] synonym: "fissure of brain" NARROW [Wikipedia:Sulcus_(neuroanatomy)] synonym: "sulci & spaces" BROAD OMO:0003004 [HBA:9352] synonym: "sulcus" BROAD [NLX:144078] xref: DHBA:10610 xref: HBA:9352 xref: NCIT:C32292 xref: neuronames:1208 xref: SCTID:279337001 xref: Wikipedia:Sulcus_(neuroanatomy) is_a: UBERON:0000093 ! sulcus relationship: dubious_for_taxon NCBITaxon:10088 relationship: part_of UBERON:0000955 ! brain property_value: editor_note "sulci are considered absent from lissencephalic mammals such as mice, but they may possess fissures. For example, the Allen mouse brain Atlas includes hippocampal, rhinal and choroid fissure. For this reason we do not place a taxon constraint on this class" xsd:string property_value: external_definition "Indentation on the surface of the brain or spinal cord that forms a recognizable landmark, e.g., central sulcus, sulcus limitans (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} [Term] id: UBERON:0013119 name: haemal node def: "A lymphoid organ found in various mammals and some birds." [Wikipedia:Haemal_nodes] comment: Hemal nodes are characterized by the presence of large numbers of erythrocytes. Lymph nodes (see below) and hemal nodes share some similarities of structure, but really are fundamentally different organs both qualitatively and quantitatively. Both lymph and hemal nodes contain diffuse lymphatic tissue, and in most cases have nodular tissue in the form of germinal centers, as well. Like the lymph node, the hemal node has a cortex and a medulla, and germinal centers are frequently seen. There's a distinct capsule, and hemal nodes are served at the hilus by an afferent arteriole. [http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab13/lab13.htm] synonym: "hemal node" EXACT [] xref: Wikipedia:Haemal_nodes is_a: UBERON:0002075 ! viscus is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ relationship: develops_from UBERON:0001637 ! artery [Term] id: UBERON:0013120 name: eyelid submuscular connective tissue xref: EMAPA:37534 {source="MA:th"} xref: MA:0001253 is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue [Term] id: UBERON:0013121 name: proximal epiphysis of phalanx of pes synonym: "basal epiphysis of phalanx of foot" EXACT [FMA:32888] synonym: "base of phalanx of foot" EXACT [FMA:32888] synonym: "basis phalangis (pedis)" EXACT [FMA:32888] synonym: "basis phalangis pedis" EXACT [FMA:TA] synonym: "proximal epiphysis of phalanx of toe" EXACT [FMA:32888] xref: FMA:32888 is_a: UBERON:0004447 ! proximal epiphysis of phalanx is_a: UBERON:0011973 ! epiphysis of phalanx of pes relationship: part_of UBERON:0001449 ! phalanx of pes [Term] id: UBERON:0013122 name: distal epiphysis of phalanx of pes synonym: "caput phalangis (pedis)" EXACT [FMA:32890] synonym: "caput phalangis pedis" EXACT [FMA:TA] synonym: "distal end of phalanx of foot" EXACT [FMA:32890] synonym: "distal epiphysis of phalanx of toe" EXACT [FMA:32890] synonym: "head of phalanx of foot" EXACT [FMA:32890] synonym: "ungual tuberosity of distal phalanx of toe" RELATED [FMA:32890] xref: FMA:32890 xref: SCTID:236801009 is_a: UBERON:0004448 ! distal epiphysis of phalanx is_a: UBERON:0011973 ! epiphysis of phalanx of pes relationship: part_of UBERON:0001449 ! phalanx of pes [Term] id: UBERON:0013124 name: left posterior cardinal vein def: "A posterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "left postcardinal vein" EXACT [FMA:70316] synonym: "posterior cardinal vein left" EXACT [EHDAA2:0001486] xref: EHDAA2:0001486 xref: FMA:70316 xref: SCTID:361504002 is_a: UBERON:0002065 ! posterior cardinal vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013125 name: left subcardinal vein def: "A subcardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "subcardinal vein left" EXACT [EHDAA2:0001932] xref: EHDAA2:0001932 xref: SCTID:361451002 is_a: UBERON:0006296 ! subcardinal vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013126 name: vein of abdomen def: "A vein that is part of a abdomen." [OBOL:automatic] subset: grouping_class synonym: "abdominal vein" EXACT [] xref: SCTID:281473003 is_a: UBERON:0001638 ! vein is_a: UBERON:0003497 ! abdomen blood vessel property_value: curator_notes "this class groups all veins that are in the abdomen. The term 'abdominal vein' may have specific meanings in different contexts. The lateral abdominal veins are present in fishes but usually merged or absent in tetrapods; in amphibians, the L&R abdominal veins merge into the ventral abdominal vein" xsd:string property_value: editor_note "TODO mirror representation of abdominal aorta" xsd:string [Term] id: UBERON:0013127 name: pulmonary venous system def: "The part of the venous system that drains the lungs[Kardong]." [ISBN:0073040584, Wikipedia:Pulmonary_venous_system] synonym: "pulmonary venous circulatory system" EXACT [] xref: Wikipedia:Pulmonary_venous_system is_a: UBERON:0002049 ! vasculature relationship: part_of UBERON:0004582 ! venous system property_value: external_definition "Pulmonary circulation is the half portion of the cardiovascular system which carries oxygen-depleted blood away from the heart, to the lungs, and returns oxygenated (oxygen-rich) blood back to the heart. The term pulmonary circulation is readily paired and contrasted with the systemic circulation. A separate system known as the bronchial circulation supplies blood to the tissue of the larger airways of the lung." xsd:string {source="Wikipedia:Pulmonary_circulation"} [Term] id: UBERON:0013128 name: bulb of penis def: "Just before each crus of the penis meets its fellow it presents a slight enlargement, named by Kobelt the bulb of the corpus spongiosum penis. It is homologous to the vestibular bulbs in females." [Wikipedia:Bulb_of_penis] synonym: "bulb of the corpus cavernosum penis" RELATED [Wikipedia:Bulb_of_penis] synonym: "bulb of the corpus spongiousum penis" RELATED [Wikipedia:Bulb_of_penis] synonym: "bulb of the penis" RELATED [Wikipedia:Bulb_of_penis] synonym: "bulb of the urethra" RELATED [Wikipedia:Bulb_of_penis] synonym: "bulbus penis" EXACT OMO:0003011 [Wikipedia:Bulb_of_penis] synonym: "penile bulb" EXACT [FMA:19614] synonym: "urethral bulb" EXACT [FMA:19614] synonym: "urethral bulb" RELATED [Wikipedia:Bulb_of_penis] xref: FMA:19614 xref: Wikipedia:Bulb_of_penis is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis [Term] id: UBERON:0013129 name: bulb of vestibule def: "Aggregations of erectile tissue that are an internal part of the clitoris. They can also be found throughout the vestibule: next to the clitoral body, clitoral crura, urethra, urethral sponge, and vagina." [Wikipedia:Vestibular_bulbs] synonym: "bulbus vestibuli" RELATED [Wikipedia:Vestibular_bulbs] synonym: "bulbus vestibuli vaginae" EXACT OMO:0003011 [Wikipedia:Vestibular_bulbs] synonym: "clitoral bulb" RELATED [Wikipedia:Vestibular_bulbs] synonym: "vestibular bulb" EXACT [FMA:20199] synonym: "vestibular bulb of vagina" EXACT [] xref: FMA:20199 xref: SCTID:279873003 xref: Wikipedia:Vestibular_bulbs is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0000997 ! mammalian vulva property_value: external_definition "Cavernous organ, located in labium minus . Examples: There iare only two bulbs of vestibule, the right and the left.[FMA]" xsd:string {ontology="FMA", source="FMA:20199"} [Term] id: UBERON:0013131 name: lobe of tail synonym: "fluke" NARROW [] synonym: "tail fluke" NARROW [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0013132 name: penicillar arteriole def: "One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified]." [http://www.merriam-webster.com/medical/penicillus, https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "penicillar artery" RELATED [] synonym: "penicilli" EXACT OMO:0003004 [http://www.merriam-webster.com/medical/penicilli] synonym: "penicillus" EXACT [FMA:16038] xref: FMA:16038 is_a: UBERON:0022292 ! splenic arteriole relationship: part_of UBERON:0001959 {source="FMA"} ! white pulp of spleen relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013133 name: superior phrenic artery def: "A phrenic artery that arises from the lower part of the thoracic aorta and is distributed to the posterior part of the upper surface of the diaphragm, and anastomoses with the musculophrenic and pericardiacophrenic arteries." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Superior_phrenic_artery] subset: human_reference_atlas synonym: "arteria phrenicea superioris" EXACT OMO:0003011 [FMA:4163, FMA:TA] synonym: "arteriae phrenicae superiores" EXACT OMO:0003011 [Wikipedia:Superior_phrenic_artery] synonym: "superior phrenic branches" RELATED [Wikipedia:Superior_phrenic_artery] xref: FMA:4163 xref: SCTID:198521008 xref: Wikipedia:Superior_phrenic_artery is_a: UBERON:0002057 ! phrenic artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013135 name: interdental plate def: "The interdental plate refers to the bone-filled mesial-distal region between the teeth." [Wikipedia:Interdental_plate] xref: Wikipedia:Interdental_plate is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001708 ! jaw skeleton property_value: taxon_notes "In paleobiology, the presence or absence of the interdental plate can determine the place of an animal in the evolutionary scale, and paleontologists use the interdental plate when trying to classify a new specimen. Thecodont reptiles and theropod dinosaur fossils have an interdental plate, whereas acrodont reptiles such as Sphenodontia do not.[3] Its presence in Archaeopteryx, an extinct avian, resulted in the proposal of the dinosaur-bird connection" xsd:string {source="WP"} [Term] id: UBERON:0013136 name: vein of lip def: "A vein that drains a lip." [OBOL:automatic] synonym: "labial vein" RELATED [] synonym: "labial vein of face" EXACT [] synonym: "lip vein" EXACT [OBOL:automatic] synonym: "vena labialis" EXACT OMO:0003011 [] xref: SCTID:367664002 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0013137 name: external pudendal artery def: "Either the superficial or deep external pudendal arteries." [Wikipedia:External_pudendal_artery] synonym: "arteriae pudendae externa" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "arteriae pudendales externa" EXACT OMO:0003011 [doi:10.1002/ca.23705] xref: SCTID:244308005 xref: Wikipedia:External_pudendal_artery is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0013138 name: coronary ligament of liver def: "The coronary ligament of the liver refers to parts of the peritoneal reflections that hold the liver to the inferior surface of the diaphragm." [Wikipedia:Coronary_ligament] synonym: "coronary ligament" EXACT [FMA:15822] synonym: "ligamentum coronaria" RELATED [Wikipedia:Coronary_ligament] synonym: "ligamentum coronarium" EXACT [FMA:15822] synonym: "ligamentum coronarium hepatis" EXACT OMO:0003011 [FMA:TA] xref: FMA:15822 xref: NCIT:C32377 xref: SCTID:279967000 xref: UMLS:C1261099 {source="ncithesaurus:Coronary_Ligament"} xref: Wikipedia:Coronary_ligament is_a: UBERON:0013139 ! ligament of liver relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum relationship: part_of UBERON:0002095 {source="FMA-modified"} ! mesentery property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0013139 name: ligament of liver def: "A nonskeletal ligament that is part of a liver." [OBOL:automatic] synonym: "hepatic ligament" EXACT [FMA:15820] synonym: "liver ligament" EXACT [] xref: FMA:15820 xref: NCIT:C32997 xref: SCTID:48536008 xref: UMLS:C0230238 {source="ncithesaurus:Liver_Ligament"} is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0013140 name: systemic vein def: "Any vein within the general circulation that transports blood back to the right atrium of the heart." [ncithesaurus:Systemic_Vein] synonym: "systemic venous tree organ part" EXACT [FMA:66644] xref: FMA:66644 xref: NCIT:C33719 xref: SCTID:244389004 xref: UMLS:C0447117 {source="ncithesaurus:Systemic_Vein"} is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0013141 name: capillary bed def: "A localized group of blood capillaries." [AEO:0001002] synonym: "microcirculatory bed" RELATED [] xref: AEO:0001002 xref: EMAPA:36291 xref: FMA:45632 xref: NCIT:C33109 xref: UMLS:C1513268 is_a: UBERON:0007502 {source="AEO"} ! epithelial plexus relationship: part_of UBERON:0002049 {source="FMA"} ! vasculature [Term] id: UBERON:0013142 name: soleal vein def: "A vein that drains the soleus." [OBOL:automatic] subset: human_reference_atlas synonym: "soleus vein" EXACT [] synonym: "vein of soleus muscle" EXACT [] synonym: "vena solealis" EXACT OMO:0003011 [] xref: SCTID:397427005 is_a: UBERON:0001551 {source="cjm"} ! vein of hindlimb zeugopod relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013143 name: gastrocnemius vein def: "A vein that drains the gastrocnemius." [OBOL:automatic] comment: divided in medial gastrocnemius vein (vena medialis gastrocnemii), lateral gastrocnemius vein (vena lateralis gastrocnemii), and intergemellar vein (Vena intergemellaris), the vein ascending between the two heads of the gastrocnemius[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] subset: human_reference_atlas synonym: "vein of gastrocnemius muscle" EXACT [] synonym: "vena gastrocnemii" EXACT OMO:0003011 [] xref: SCTID:264481007 is_a: UBERON:0001551 {source="cjm"} ! vein of hindlimb zeugopod relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013144 name: vein of genicular venous plexus comment: The term genicular venous plexus (plexus venosus genicularis) should replace the term genicular veins. At the knee, deep veins do not correspond exactly to the branches of the popliteal artery (articular arteries). They are arranged in a complex plexus of interconnecting veins.[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] subset: human_reference_atlas synonym: "genicular vein" RELATED [FMA:44559] xref: FMA:44559 is_a: UBERON:0001638 ! vein is_a: UBERON:0003503 ! leg blood vessel relationship: part_of UBERON:0001465 ! knee relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013145 name: accessory saphenous vein synonym: "posteromedial vein of thigh" EXACT [FMA:44320] xref: FMA:44320 xref: SCTID:302677006 is_a: UBERON:0007318 ! saphenous vein [Term] id: UBERON:0013146 name: venous system of brain def: "Missing definition for term UBERON:0013146. Please replace it using linked reference." [PMID:20557782, PMID:20566102] synonym: "brain venous system" EXACT [VHOG:0001328] synonym: "cranial venous system" RELATED [] xref: EHDAA2:0000185 xref: EMAPA:18631 xref: MA:0003184 xref: VHOG:0001328 is_a: UBERON:0007798 {source="cjm"} ! vascular system relationship: part_of UBERON:0000955 {source="EHDAA2"} ! brain relationship: part_of UBERON:0004582 {source="VHOG-modified"} ! venous system [Term] id: UBERON:0013147 name: early mesencephalic vesicle comment: gives rise to midbrain vesicle which gives rise to cerebral aqueduct synonym: "mesencephalic vesicle" EXACT [EHDAA2:0001102] xref: EHDAA2:0001102 is_a: UBERON:0013150 ! future brain vesicle relationship: part_of UBERON:0009616 {source="EHDAA2"} ! presumptive midbrain [Term] id: UBERON:0013148 name: early midbrain vesicle comment: develops into cerebral aqueduct synonym: "midbrain vesicle" EXACT [EHDAA2:0001103] xref: EHDAA2:0001103 xref: SCTID:361481005 is_a: UBERON:0013150 ! future brain vesicle relationship: develops_from UBERON:0013147 {source="EHDAA2"} ! early mesencephalic vesicle relationship: part_of UBERON:0001891 {source="EHDAA2"} ! midbrain [Term] id: UBERON:0013149 name: hindbrain vesicle comment: gives rise of 4th ventricle synonym: "rhombencephalic vesicle" EXACT [EHDAA2:0000101] xref: EHDAA2:0000101 xref: SCTID:361482003 is_a: UBERON:0013150 ! future brain vesicle relationship: part_of UBERON:0007277 {source="EHDAA2"} ! presumptive hindbrain [Term] id: UBERON:0013150 name: future brain vesicle synonym: "brain vesicle" RELATED [] synonym: "early brain vesicle" EXACT [] synonym: "primary brain vesicle" NARROW [] synonym: "primitive brain vesicle" EXACT [] synonym: "secondary brain vesicle" NARROW [] xref: NCIT:C34259 xref: neuronames:2499 xref: SCTID:360409004 is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0005281 {source="EHDAA2"} ! ventricular system of central nervous system relationship: part_of UBERON:0006238 ! future brain property_value: editor_note "consider adding all secondary vesicles (e.g. diencephalic; my/metencephalic. See http://www.dartmouth.edu/~rswenson/NeuroSci/chapter_4.html)." xsd:string property_value: external_ontology_notes "Note that some sources may treat the term vesicle as the progenitor of the whole brain region; for example 'The retina develops directly from the neural tube as an outpouching from the diencephalic vesicle'" xsd:string [Term] id: UBERON:0013151 name: choroidal artery def: "One of two arteries (anterior and posterior choroidal artery) that supply blood to the choroid plexus, optic tract, hippocampus, globus pallidus, and other various brain regions." [ncithesaurus:Choroidal_Artery] synonym: "artery of choroid plexus" EXACT [] synonym: "choroid artery" EXACT [] xref: NCIT:C32310 xref: SCTID:244210009 xref: UMLS:C0226164 {source="ncithesaurus:Choroidal_Artery"} is_a: UBERON:0001637 ! artery [Term] id: UBERON:0013152 name: interventricular foramen of heart def: "A temporary opening between the developing ventricles of the heart. The ventricles arise as a single cavity is divided by the developing interventricular septum. Before the septum closes completely, the remaining opening between the two ventricles is termed the interventricular foramen." [Wikipedia:Primary_interventricular_foramen] comment: Phenotype notes: In some individuals, the foramen fails to close, leading to an interventricular septal defect known as a patent interventricular foramen synonym: "interventricular foramen" RELATED [] synonym: "primary interventricular foramen" RELATED [EHDAA2:0004064] xref: EHDAA2:0004064 xref: Wikipedia:Primary_interventricular_foramen is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0013153 name: arachnoid villus def: "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves." [ISBN:0471888893, Wikipedia:Arachnoid_granulation] synonym: "arachnoid granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "arachnoid villi" RELATED OMO:0003004 [Wikipedia:Arachnoid_granulation] synonym: "arachnoid villus" RELATED [Wikipedia:Arachnoid_granulation] synonym: "arachnoidal granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "glandulae pacchioni" RELATED [Wikipedia:Arachnoid_granulation] synonym: "glandulæ pacchioni" RELATED [Wikipedia:Arachnoid_granulation] synonym: "granulationes arachnoideales" RELATED [Wikipedia:Arachnoid_granulation] synonym: "pacchioni's granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "pacchionian bodies" RELATED [Wikipedia:Arachnoid_granulation] synonym: "pacchionian glands" RELATED [Wikipedia:Arachnoid_granulation] synonym: "paccini's granulation" RELATED [Wikipedia:Arachnoid_granulation] xref: FMA:83980 xref: NCIT:C32137 xref: UMLS:C0228130 {source="ncithesaurus:Arachnoid_Villus"} xref: Wikipedia:Arachnoid_granulation is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater property_value: external_definition "Arachnoid granulations (or arachnoid villi) are small protrusions of the arachnoid (the thin second layer covering the brain) through the dura mater (the thick outer layer). They protrude into the venous sinuses of the brain, and allow cerebrospinal fluid (CSF) to exit the brain, and enter the blood stream. Largest granulations lie along the superior sagittal sinus, a large venous space running from front to back along the centre of the head (on the inside of the skull). They are, however, present along other dural sinuses as well. Smaller granulations are called villi, large calcified ones are referred to as pacchionian bodies[Wikipedia:Arachnoid_granulation]." xsd:string {source="Wikipedia:Arachnoid_granulation"} [Term] id: UBERON:0013154 name: 1st arch maxillary endoderm synonym: "endoderm of maxillary component" EXACT [EMAPA:16390] xref: EHDAA2:0000040 xref: EMAPA:16390 is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0007122 {source="EHDAA2"} ! pharyngeal pouch 1 relationship: part_of UBERON:0007238 {source="EHDAA2"} ! 1st arch maxillary component relationship: part_of UBERON:0009722 {source="EHDAA2"} ! entire pharyngeal arch endoderm [Term] id: UBERON:0013155 name: 1st arch mandibular ectoderm synonym: "ectoderm of mandibular component" EXACT [EMAPA:16383] xref: EHDAA2:0000032 xref: EMAPA:16383 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0007237 {source="EHDAA2"} ! 1st arch mandibular component [Term] id: UBERON:0013156 name: 1st arch mandibular endoderm synonym: "endoderm of mandibular component" EXACT [EMAPA:16384] xref: EHDAA2:0000033 xref: EMAPA:16384 is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0007122 {source="EHDAA2"} ! pharyngeal pouch 1 relationship: part_of UBERON:0007237 {source="EHDAA2"} ! 1st arch mandibular component relationship: part_of UBERON:0009722 {source="EHDAA2"} ! entire pharyngeal arch endoderm [Term] id: UBERON:0013157 name: 1st arch maxillary-mandibular cleft synonym: "1st arch maxillary-mandibular groove ectoderm" EXACT [EHDAA2:0000046] synonym: "ectoderm of maxillary-mandibular groove" EXACT [EMAPA:16395] xref: EHDAA2:0000046 xref: EMAPA:16395 is_a: UBERON:0005879 ! pharyngeal cleft relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1 [Term] id: UBERON:0013158 name: foregut-midgut junction gland def: "A gland that is part of a foregut-midgut junction." [OBOL:automatic] synonym: "gland of foregut-midgut junction" EXACT [EMAPA:17065] xref: EHDAA2:0000574 xref: EMAPA:17065 is_a: UBERON:0003408 ! gland of digestive tract relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0013159 name: epithalamus mantle layer synonym: "mantle layer epithalamus" EXACT [VHOG:0000913] synonym: "mantle layer of epithalamus" EXACT [] xref: EHDAA2:0000449 xref: EHDAA:5435 xref: EMAPA:17533 xref: VHOG:0000913 is_a: UBERON:0004061 ! neural tube mantle layer relationship: develops_from UBERON:0009580 ! diencephalon mantle layer relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0013160 name: epithalamus ventricular layer synonym: "ventricular layer epithalamus" EXACT [VHOG:0000884] synonym: "ventricular layer of epithalamus" EXACT [] xref: EHDAA2:0000450 xref: EHDAA:5437 xref: EMAPA:17535 xref: VHOG:0000884 is_a: UBERON:0004060 ! neural tube ventricular layer relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0013161 name: left lateral ventricle def: "A telencephalic ventricle that is in_the_left_side_of a telencephalon." [OBOL:automatic] synonym: "left telencephalic ventricle" EXACT [] xref: FMA:78450 xref: SCTID:368593005 is_a: UBERON:0002285 ! telencephalic ventricle is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0002812 {source="FMA"} ! left cerebral hemisphere property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013162 name: right lateral ventricle def: "A telencephalic ventricle that is in_the_right_side_of a telencephalon." [OBOL:automatic] synonym: "right telencephalic ventricle" EXACT [] xref: FMA:78449 xref: SCTID:368571000 is_a: UBERON:0002285 ! telencephalic ventricle is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0002813 {source="FMA"} ! right cerebral hemisphere property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013164 name: molariform tooth def: "A molar or premolar." [ISBN:0073040584] synonym: "cheek tooth" RELATED [ISBN:0073040584] synonym: "molariform" RELATED [ISBN:0073040584] synonym: "postcanine tooth" EXACT [http://www.termwiki.com/EN\:postcanine_teeth] is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0013165 name: epiglottic vallecula def: "A depression in front of the epiglottis, in which food is temporarily gathered as the animal chews." [ISBN:0073040584, Wikipedia:Epiglottic_vallecula] synonym: "vallecula" BROAD [] synonym: "vallecula epiglottica" EXACT OMO:0003011 [] synonym: "vallecula of epiglottis" EXACT [FMA:55037] xref: FMA:55037 xref: SCTID:276955003 xref: Wikipedia:Epiglottic_vallecula is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000341 ! throat property_value: external_definition "Region of surface of viscerocranial mucosa, which is a depression located between the median and lateral glosso-epiglottic folds. Examples: There are only two instances, right and left epiglottic valleculas[FMA:55037]." xsd:string {source="FMA:55037"} [Term] id: UBERON:0013166 name: vallecula of cerebellum def: "On the upper surface of the cerebellum the vermis is elevated above the level of the hemispheres, but on the under surface it is sunk almost out of sight in the bottom of a deep depression between them; this depression is called the vallecula of the cerebellum, and lodges the posterior part of the medulla oblongata." [Wikipedia:Vallecula_of_cerebellum] synonym: "vallecula cerebelli" EXACT OMO:0003011 [FMA:75267] xref: BAMS:vlcb xref: FMA:75267 xref: NCIT:C12237 xref: neuronames:646 xref: Wikipedia:Vallecula_of_cerebellum is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0013167 name: cricopharyngeal ligament def: "Laryngeal ligament that connects the cricoid cartilage to the pharynx[WP,modified]." [Wikipedia:Cricopharyngeal_ligament] synonym: "crico-pharyngeal ligament" EXACT [] synonym: "ligamentum cricopharyngeum" EXACT OMO:0003011 [Wikipedia:Cricopharyngeal_ligament] xref: FMA:55260 xref: SCTID:172455006 xref: Wikipedia:Cricopharyngeal_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx [Term] id: UBERON:0013168 name: thyroepiglottic ligament def: "Laryngeal ligament that connects the epiglottis to the thyroid cartilage[WP,modified]." [Wikipedia:Thyroepiglottic_ligament] synonym: "ligamentum thyroepiglotticum" EXACT OMO:0003011 [] synonym: "thyroepiglottic ligament" EXACT [FMA:55230] xref: FMA:55230 xref: NCIT:C33777 xref: SCTID:279562000 xref: UMLS:C0225514 {source="ncithesaurus:Thyroepiglottic_Ligament"} xref: Wikipedia:Thyroepiglottic_ligament is_a: UBERON:0006325 {source="FMA"} ! laryngeal intrinsic ligament [Term] id: UBERON:0013169 name: vestibular ligament def: "The vestibular fold is a fibroelastic band which passes from the ventral margin of the cuneiform cartilage to the cranial dorsal surface of the thyroid cartilage. It forms the support for the free edge of the vestibular fold." [MURDOCH:2193, Wikipedia:Vestibular_ligament] synonym: "ligamentum vestibulare" EXACT OMO:0003011 [Wikipedia:Vestibular_ligament] synonym: "ventricular ligament" EXACT [Wikipedia:Vestibular_ligament] synonym: "vestibular ligament of larynx" EXACT [] xref: FMA:64147 xref: SCTID:279561007 xref: Wikipedia:Vestibular_ligament is_a: UBERON:0006325 {source="FMA"} ! laryngeal intrinsic ligament [Term] id: UBERON:0013170 name: cricoarytenoid ligament def: "Laryngeal ligament that connects the cricoid and arytenoid cartilages[WP,modified]." [Wikipedia:Cricoarytenoid_ligament] synonym: "crico-arytenoid ligament" EXACT [FMA:55261] synonym: "ligamentum cricoaryteneoideum" EXACT OMO:0003011 [Wikipedia:Cricoarytenoid_ligament] xref: FMA:55261 xref: SCTID:172533001 xref: Wikipedia:Cricoarytenoid_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx [Term] id: UBERON:0013171 name: cricothyroid ligament def: "This attaches the caudal border of the thyroid cartilage to the ventral arch of the cricoid cartilage. Its sheetlike ventral portion is sometimes referred to as the cricothyroid membrane. Being elastic, it 'balances' movement at the hinge-like cricothyroid joint and determines the resting position of the larynx when the muscles are relaxed[MURDOCH]. The cricothyroid ligament is the larger part of the laryngeal membrane, continuing inferiorly as a median or anterior part and twin lateral ligaments. The median cricothyroid ligament is a flat band of white tissue joining the cricoid and thyroid cartilages, while the lateral cricothyroid ligament is also known as the cricothyroid membrane (also called conus elasticus)." [MURDOCH:483, Wikipedia:Cricothyroid_ligament] synonym: "crico-thyroid ligament" EXACT [] synonym: "ligamentum cricothyreoideum" EXACT OMO:0003011 [Wikipedia:Cricothyroid_ligament] xref: FMA:55233 xref: NCIT:C32403 xref: SCTID:279558006 xref: UMLS:C0225542 {source="ncithesaurus:Cricothyroid_Ligament"} xref: Wikipedia:Cricothyroid_ligament is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0013172 name: cricotracheal ligament def: "The cricotracheal ligament connects the cricoid cartilage with the first ring of the trachea[WP]. The caudal border of the cricoid cartilage is joined to the first ring of the trachea by this ligament. It is an extrinsic laryngeal ligament. It resembles the fibrous membrane which connects the cartilaginous rings of the trachea to each other." [MURDOCH:486, Wikipedia:Cricotracheal_ligament] xref: FMA:55259 xref: NCIT:C32405 xref: SCTID:279553002 xref: UMLS:C0225543 {source="ncithesaurus:Cricotracheal_Ligament"} xref: Wikipedia:Cricotracheal_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx [Term] id: UBERON:0013173 name: anterior part of tympanic bone def: "The anterior aspect of the tympanum." [ncithesaurus:Anterior_Wall_of_the_Tympanum] synonym: "anterior surface of tympanic plate" EXACT [FMA:56478] synonym: "anterior wall of tympanic cavity" EXACT [] synonym: "anterior wall of tympanum" EXACT [] xref: FMA:56478 xref: NCIT:C32117 xref: SCTID:368942006 xref: UMLS:C1510916 {source="ncithesaurus:Anterior_Wall_of_the_Tympanum"} is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0010066 ! tympanic plate [Term] id: UBERON:0013174 name: sigmoid process of tympanic bone def: "A wavy crest externally on the tympanic bone of cetaceans." [http://palaeos.com/vertebrates/glossary/glossaryS.html] synonym: "sigmoid process" EXACT [] synonym: "sigmoid process of auditory bulla" EXACT [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0008959 ! auditory bulla [Term] id: UBERON:0013175 name: nasal air sac def: "An air sac opening into the passage of the blowhole that is hypothesized to be involved in echolocation." [http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html] synonym: "blowhole air sac" EXACT [] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0000033 ! head property_value: location_notes "May be positioned distally or frontally" xsd:string [Term] id: UBERON:0013176 name: phonic lip synonym: "monkey lips" RELATED [http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html] synonym: "phonic lips" RELATED OMO:0003004 [] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0013188 {notes="check for sperm whales"} ! monkey lips dorsal bursa complex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Delphinschaedel.svg" xsd:anyURI property_value: editor_note "requires review w.r.t location in physeter vs other odontocetes" xsd:string property_value: function_notes "When the lips snap together during click production, vibrations in the dorsal bursae are likely produced[ISBN:0120885522]" xsd:string property_value: taxon_notes "Large and cornified in sperm whales" xsd:string [Term] id: UBERON:0013177 name: dorsal bursa synonym: "dorsal bursae" RELATED OMO:0003004 [] synonym: "fatty dorsal bursa" RELATED [] is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0013188 {notes="check for sperm whales"} ! monkey lips dorsal bursa complex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Delphinschaedel.svg" xsd:anyURI [Term] id: UBERON:0013178 name: anterior dorsal bursa synonym: "anterior bursa" BROAD [] is_a: UBERON:0013177 ! dorsal bursa [Term] id: UBERON:0013179 name: posterior dorsal bursa synonym: "posterior bursa" BROAD [] is_a: UBERON:0013177 ! dorsal bursa property_value: taxon_notes "right posterior dorsal bursa may be homologous to spermaceti organ" xsd:string [Term] id: UBERON:0013180 name: bursal cartilage is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0013188 ! monkey lips dorsal bursa complex [Term] id: UBERON:0013181 name: blowhole ligament is_a: UBERON:0008845 ! nonskeletal ligament relationship: part_of UBERON:0013188 ! monkey lips dorsal bursa complex property_value: function_notes "Likely involved in regulating air movement in perhaps whistle production" xsd:string {source="ISBN:0120885522"} [Term] id: UBERON:0013182 name: core of melon organ def: "The core component of the ovoid-shaped, fatty organ found in the forehead of all toothed whales." [Wikipedia:Melon_(whale)] synonym: "melon core" RELATED [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0008960 ! melon organ [Term] id: UBERON:0013188 name: monkey lips dorsal bursa complex def: "A structure consisting of a pair of anterior and posterior dorsal bursae in which a pair of phonic lips are embedded, along with the bursal cartilage and a blowhole ligament." [ISBN:0120885522] synonym: "MLDB complex" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0015212 ! lateral structure property_value: taxon_notes "all odontocetes except sperm whales posses two bilaterally placed MLDB complexes, placed just below the floor of the vestibular sac" xsd:string [Term] id: UBERON:0013189 name: junk chamber synonym: "junk" RELATED [] synonym: "junk bodies" RELATED OMO:0003004 [] synonym: "junk body" RELATED [] synonym: "junk organ" RELATED [] is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0000033 ! head property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Sperm_whale_head_anatomy.svg" xsd:anyURI property_value: taxon_notes "May be homologous to melon organ" xsd:string [Term] id: UBERON:0013190 name: entotympanic bone def: "Entotympanics are independent elements present in the auditory bullae of various eutherians." [DOI:10.1023/A\:1020538313412] synonym: "entotyympanic" RELATED [] is_a: UBERON:0002513 {source="DOI:10.1023/A:1020538313412"} ! endochondral bone is_a: UBERON:0003457 ! head bone relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0013191 name: ovarian cortex def: "The layer of the ovarian stroma lying immediately beneath the tunica albuginea, composed of connective tissue cells and fibers, among which are scattered primary and secondary (antral) follicles in various stages of development; the cortex varies in thickness according to the age of the individual, becoming thinner with advancing years; included in the follicles are the cumulus oophorus, membrana granulosa (and the granulosa cells inside it), corona radiata, zona pellucida, and primary oocyte; the zona pellucida, theca of follicle, antrum and liquor folliculi are also contained in the follicle; also in the cortex is the corpus luteum derived from the follicles." [MGI:anna] subset: human_reference_atlas subset: pheno_slim synonym: "cortex of ovary" EXACT [FMA:18613] synonym: "cortex ovarii (zona parenchymatosa)" EXACT [FMA:18613] xref: EMAPA:37927 {source="MA:th"} xref: FMA:18613 xref: NCIT:C33243 xref: UMLS:C0227878 {source="ncithesaurus:Ovarian_Cortex"} is_a: UBERON:0001851 ! cortex is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0006960 ! ovary stroma relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013192 name: ovarian medulla def: "Highly vascular stroma found in the center of the ovary that forms from embryonic mesenchyme and contains blood vessels, lymphatic vessels, and nerves; this stroma forms the tissue of the hilum by which the ovarian ligament is attached, and through which the blood vessels enter; it does not contain any ovarian follicles." [MGI:anna] subset: pheno_slim synonym: "medulla of ovary" EXACT [FMA:18616] synonym: "medulla ovarii (zona vasculosa)" EXACT [FMA:18616] synonym: "zona vasculosa of Waldeyer" RELATED [Wikipedia:Medulla_of_ovary] xref: EMAPA:37928 {source="MA:th"} xref: FMA:18616 xref: NCIT:C33245 xref: UMLS:C0227879 {source="ncithesaurus:Ovarian_Medulla"} xref: Wikipedia:Medulla_of_ovary is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! ovary property_value: structure_notes "composed of loose connective tissue that contains blood vessels, lymph vessels and nerves" xsd:string {source="NCIT"} [Term] id: UBERON:0013193 name: parakeratinized epithelium def: "An epithelium that is characterized by incomplete keratinization of the cells in the stratum corneum. The cells are flattened and composed primarily of packed tonofilaments. However, the cells may retain remnants of nuclei and other organelles." [http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] comment: Example: parts of oral epithelium is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0013194 name: orthokeratinized epithelium def: "A keratinized epithelium in which the cells of the stratum corneum become very flat, loose their nuclei and cytoplasmic organelles and are now composed of densely packed tonofilaments cemented by filaggrin." [http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0013195 name: parakeratinized epithelium of gingiva def: "A parakeratinized epithelium that is part of a gingiva." [OBOL:automatic] subset: human_reference_atlas synonym: "gingival parakeratinized epithelium" EXACT [] is_a: UBERON:0001949 ! gingival epithelium is_a: UBERON:0013193 ! parakeratinized epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013196 name: strand of wool def: "A strand of pelage hair that is crimped and grows in clusters." [Wikipedia:Wool] synonym: "animal wool" RELATED [] synonym: "strand of wool hair" RELATED [] synonym: "wool" RELATED [MESH:A13.970] xref: MESH:D014935 xref: SCTID:90080004 is_a: UBERON:0010509 ! strand of pelage hair relationship: never_in_taxon NCBITaxon:9606 {source="https://github.com/obophenotype/uberon/issues/703"} [Term] id: UBERON:0013198 name: cocoon def: "A casing spun of silk by many moth caterpillars, and numerous other holometabolous insect larvae as a protective covering for the pupa[WP]." [Wikipedia:Pupa#Cocoon] comment: analagous to a puparium in other insects is_a: UBERON:0018657 ! pupal case relationship: never_in_taxon NCBITaxon:37572 [Term] id: UBERON:0013199 name: stria of neuraxis synonym: "neuraxis stria" EXACT [FMA:83854] synonym: "neuraxis striae" EXACT OMO:0003004 [] synonym: "stria" BROAD [] synonym: "striae" BROAD OMO:0003004 [] xref: FMA:83854 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0013201 name: olfactory pathway def: "Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb." [MESH:A08.186.211.577.699] synonym: "anterior perforated substance" RELATED [MESH:A08.186.211.577.699] synonym: "rhinencephalon" RELATED [MESH:A08.186.211.577.699] xref: MESH:D009833 xref: neuronames:2078 xref: SCTID:281148007 xref: Wikipedia:Rhinencephalon is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0005725 ! olfactory system [Term] id: UBERON:0013203 name: hypogastrium def: "The hypogastrium (or hypogastric region, or pubic region) is an area of the human abdomen located below the navel." [Wikipedia:Hypogastrium] synonym: "hypogastric part of abdomen" EXACT [FMA:14602] synonym: "hypogastric region" EXACT [FMA:14602] synonym: "hypogastric region" RELATED [Wikipedia:Hypogastrium] synonym: "pubic part of abdomen" EXACT [FMA:14602] synonym: "pubic region" EXACT [FMA:14602] synonym: "pubic region" RELATED [Wikipedia:Hypogastrium] synonym: "regio pubica" EXACT [FMA:TA] synonym: "suprapubic region" EXACT [FMA:14602] xref: CALOHA:TS-2346 xref: FMA:14602 xref: NCIT:C32755 xref: SCTID:182348003 xref: UMLS:C0230189 {source="ncithesaurus:Hypogastric_Region"} xref: Wikipedia:Hypogastrium is_a: UBERON:0009569 ! subdivision of trunk relationship: part_of UBERON:0000916 ! abdomen property_value: has_relational_adjective "hypogastric" xsd:string [Term] id: UBERON:0013204 name: epipubic bone def: "One of a pair of bones running antero-laterally from the centre of the pubis in marsupials and some other mammals." [http://orcid.org/0000-0002-6601-2165] synonym: "marsupial bone" NARROW [] xref: Wikipedia:Epipubic_bone is_a: UBERON:0007830 {source="cjm"} ! pelvic girdle bone/zone is_a: UBERON:0015212 ! lateral structure relationship: never_in_taxon NCBITaxon:314146 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4c/Macropus_major_hind_legs.png" xsd:anyURI property_value: external_definition "Epipubic bones are a pair of bones projecting forward from the pelvic bones of modern marsupials and of some fossil mammals: multituberculates, monotremes, and even basal eutherians (the ancestors of placental mammals). In modern marsupials the epipubic bones are often called 'marsupial bones' because they support the mother's pouch ('marsupium' is Latin for 'pouch'), but their presence on other groups of mammals indicates that this was not their original function, which some researchers think was to assist locomotion by supporting some of the muscles that flex the thigh. The epipubic bones were first described in 1698 but their functions have remained unresolved. It has been suggested that they form part of a kinetic linkage stretching from the femur on one side to the ribs on the opposite side. This linkage is formed by a series of muscles: each epipubic bone is connected to the femur by the pectineus muscle, and to the ribs and vertebrae by the pyramidalis, rectus abdominis, and external and internal obliques. According to this hypothesis, the epipubic bones act as levers to stiffen the trunk during locomotion[Wikipedia:Epipubic_bone]." xsd:string {source="Wikipedia:Epipubic_bone"} property_value: has_relational_adjective "epipubic" xsd:string [Term] id: UBERON:0013206 name: nasal tentacle def: "A fleshy appendage ringing the snout of a Star-nosed mole." [Wikipedia:Star-nosed_mole] synonym: "nasal ray" RELATED [] xref: Wikipedia:Star-nosed_mole is_a: UBERON:0000021 ! cutaneous appendage relationship: part_of UBERON:0001003 ! skin epidermis [Term] id: UBERON:0013207 name: entepicondylar foramen def: "A canal through the medial epicondyle at the distal end of the vertebrate humerus, usually traversed by the median nerve and brachial artery." [http://www.jstor.org/discover/10.2307/2422468] xref: Wikipedia:Entepicondylar_foramen is_a: UBERON:0005744 ! bone foramen relationship: never_in_taxon NCBITaxon:91561 relationship: never_in_taxon NCBITaxon:9365 relationship: never_in_taxon NCBITaxon:9397 relationship: never_in_taxon NCBITaxon:9604 relationship: never_in_taxon NCBITaxon:9721 relationship: never_in_taxon NCBITaxon:9975 relationship: part_of UBERON:0004404 ! distal epiphysis of humerus relationship: present_in_taxon NCBITaxon:376911 relationship: present_in_taxon NCBITaxon:37887 relationship: present_in_taxon NCBITaxon:38624 relationship: present_in_taxon NCBITaxon:9255 relationship: present_in_taxon NCBITaxon:9265 relationship: present_in_taxon NCBITaxon:9322 relationship: present_in_taxon NCBITaxon:9338 relationship: present_in_taxon NCBITaxon:9363 relationship: present_in_taxon NCBITaxon:9369 relationship: present_in_taxon NCBITaxon:9376 relationship: present_in_taxon NCBITaxon:9681 relationship: present_in_taxon NCBITaxon:9709 property_value: taxon_notes "It is often present in primitive placentals, such as the enigmatic Madagascan Plesiorycteropus. In most Neotominae and all Tylomyinae among cricetid rodents, it is located above the medial epicondyle of the humerus, but it is absent in all Sigmodontinae and Arvicolinae and this trait has been suggested as a synapomorphy for the former subfamily.[WP]" xsd:string property_value: taxon_notes "Primitive amniote feature found in primitive reptil-like amphibians (Romeer) [http://www.jstor.org/discover/10.2307/2422468]" xsd:string [Term] id: UBERON:0013208 name: Grueneberg ganglion def: "An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures." [Wikipedia:Gr%C3%BCneberg_ganglion] synonym: "GG" RELATED OMO:0003000 [NCBIBook:NBK55971] synonym: "Gruneberg ganglion" RELATED [MA:0002891] synonym: "Grüneberg ganglion" EXACT [] synonym: "septal organ of Gruneberg" RELATED [MA:0002891] xref: EMAPA:35765 xref: MA:0002891 xref: Wikipedia:Gr%C3%BCneberg_ganglion is_a: UBERON:0000045 ! ganglion is_a: UBERON:0015245 {source="MA", source="NCBIBook:NBK55971"} ! septal olfactory organ [Term] id: UBERON:0013211 name: cerumen gland def: "A specialized sudoriferous gland (sweat glands) located subcutaneously in the external auditory canal." [Wikipedia:Ceruminous_glands] subset: pheno_slim synonym: "cerumen-secreting gland" EXACT [] synonym: "ceruminous gland" EXACT [] synonym: "ceruminous sweat gland" EXACT [ISBN:0123813611] synonym: "earwax gland" EXACT [] xref: NCIT:C32294 xref: SCTID:368648008 xref: UMLS:C0229352 {source="ncithesaurus:Ceruminous_Gland"} xref: Wikipedia:Ceruminous_glands is_a: UBERON:0000382 {source="ISBN:0123813611"} ! apocrine sweat gland relationship: dubious_for_taxon NCBITaxon:10088 {source="ISBN:0123813611", source="https://github.com/obophenotype/mouse-anatomy-ontology/issues/99"} relationship: part_of UBERON:0001691 ! external ear property_value: structure_notes "Ceruminous glands are simple, coiled, tubular glands made up of an inner secretory layer of cells and an outer myoepithelial layer of cells. The glands drain into larger ducts, which then drain into the guard hairs that reside in the external auditory canal. Here they produce cerumen, or earwax, by mixing their secretion with sebum and dead epidermal cells" xsd:string [Term] id: UBERON:0013212 name: anal sac gland secretion def: "A bodily secretion that is produced by a gland of anal sac." [OBOL:automatic] synonym: "anal gland secretion" RELATED [] synonym: "castoreum" NARROW SENSU [NCBITaxon:29132] synonym: "civet" NARROW SENSU [NCBITaxon:9673] synonym: "hyena butter" RELATED SENSU [Wikipedia:Hyena_butter] synonym: "musk" RELATED [NCBITaxon:30533] synonym: "odorous sac" RELATED [] is_a: UBERON:0000456 ! secretion of exocrine gland relationship: present_in_taxon NCBITaxon:119825 relationship: present_in_taxon NCBITaxon:30533 relationship: present_in_taxon NCBITaxon:9673 property_value: taxon_notes "the anal gland secretions of species such as civet and beavers are used perfumery" xsd:string [Term] id: UBERON:0013213 name: ossicone def: "Ossicones are horn-like protuberances on the heads of giraffes, male okapis, and their extinct relatives, such as Sivatherium, and the climacoceratids, such as Climacoceras. Only giraffids have true ossicones (as opposed to horns or antlers). The base that a deer's antlers grow from is very similar to ossicones. Ossicones are similar to the horns of antelopes and cattle, save that they are derived from ossified cartilage, and that the ossicones remain covered in skin and fur, rather than horn. Antlers (such as on deer) are derived from bone tissue: when mature, the skin and fur covering of the antlers, termed 'velvet,' is sloughed and scraped off to expose the bone of the antlers." [Wikipedia:Ossicone] xref: Wikipedia:Ossicone is_a: UBERON:0006969 ! cranial appendage [Term] id: UBERON:0013216 name: udder def: "A large pendulous organ consisting of two or more mammary glands enclosed in a common envelope and each provided with a single nipple." [Wikipedia:Udder] xref: SCTID:27528008 xref: Wikipedia:Udder is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0003100 ! female organism property_value: external_definition "An udder is an organ formed of the mammary glands of female quadruped mammals, especially ruminants such as cattle, goats, sheep and deer. The udder is a single mass hanging beneath the animal, consisting of pairs of mammary glands. In cattle there are normally two pairs, in sheep, goats and deer there is one pair, and in some animals such as pigs there are many pairs. Udder care and hygiene in cows is important in milking, aiding uninterrupted and untainted milk production, and preventing mastitis. Products exist to soothe the chapped skin of the udder. This helps prevent bacterial infection, and reduces irritation during milking by the cups, and so the cow is less likely to kick the cups off[Wikipedia:Udder]." xsd:string {source="Wikipedia:Udder"} [Term] id: UBERON:0013217 name: zygomatic plate def: "In rodent anatomy, the zygomatic plate is a bony plate derived from the flattened front part of the zygomatic arch (cheekbone). At the back, it connects to the front (maxillary) root of the zygomatic arch, and at the top it is connected to the rest of the skull via the antorbital bridge. It is part of the maxillary bone, or upper jaw, which also contains the upper cheekteeth. Primitively, rodents have a nearly horizontal zygomatic plate. In association with specializations in zygomasseteric system, several distinct morphologies have developed across the order. The term is also used for an analogous structure in some South American typotheres, including Pseudotypotherium and Medistylus." [Wikipedia:Zygomatic_plate] xref: Wikipedia:Zygomatic_plate is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla relationship: part_of UBERON:0002500 ! zygomatic arch [Term] id: UBERON:0013218 name: rete mirabile def: "A rete mirabile (Latin for 'wonderful net'; plural retia mirabilia) is a complex of arteries and veins lying very close to each other, found in some vertebrates. The rete mirabile utilizes countercurrent blood flow within the net (blood flowing in opposite directions. ) It exchanges heat, ions, or gases between vessel walls so that the two bloodstreams within the rete maintain a gradient with respect to temperature, or concentration of gases or solutes." [Wikipedia:Rete_mirabile] comment: GAT in FMA synonym: "red body" RELATED [Wikipedia:Rete_mirabile] synonym: "red gland" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilia" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilis" RELATED [Wikipedia:Rete_mirabile] synonym: "retie mirabilia" RELATED OMO:0003004 [Wikipedia:Rete_mirabile] synonym: "wonderful net" RELATED [Wikipedia:Rete_mirabile] xref: BTO:0006363 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:76728 xref: Wikipedia:Rete_mirabile is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0013219 name: parotoid gland def: "The parotoid gland (alternatively, paratoid gland) is an external skin gland on the back, neck, and shoulder of toads and some frogs and salamanders. It secretes a milky alkaloid substance to deter predators. The substance produced acts as a neurotoxin. Parotoid glands are sometimes said to be wart-like in appearance, though warts are abnormal growths caused by viral infections while parotoid glands are normal, healthy parts of the animals that bear them. The vague similarity in appearance, however, is the reason behind the mistaken belief that touching a toad causes warts." [Wikipedia:Parotoid_gland] synonym: "paratoid gland" RELATED [] xref: Wikipedia:Parotoid_gland is_a: UBERON:0002530 ! gland [Term] id: UBERON:0013220 name: foramen of Panizza def: "A hole with that connects the left and right aorta in animals of the order Crocodilia." [Wikipedia:Foramen_of_Panizza] xref: Wikipedia:Foramen_of_Panizza is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000948 ! heart property_value: taxon_notes "Crocodilians have a completely separated ventricle with deoxygenated blood from the body, or systemic circulation, in the right ventricle and oxygenated blood from the lungs, or pulmonary circulation, in the left ventricle, as in birds and mammals. Two vessels, the left aorta and the pulmonary artery, exit the right ventricle. Blood from the right ventricle goes to the lungs through the pulmonary artery, as in mammals and birds. However, when a unique active valve leading to the pulmonary artery contracts, pressure in the right ventricle can increase and blood can leave the right ventricle, enter the left aortic arch, and therefore bypass the pulmonary circulation. The foramen of panizza connects the left and right aorta. Deoxygenated blood from the right ventricle, sitting in the left aorta, can flow into the right aorta through the foramen of panizza. When the heart is relaxed, some oxygenated blood from the left ventricle, sitting in the right aorta, can flow into the left aorta across the foramen of panizza. However, some species of Crocodilians have regulatory sphincters that prevent unwanted flow of blood through the foramen of panizza during non-diving" xsd:string [Term] id: UBERON:0013221 name: caudofemoralis def: "The caudofemoralis (from the latin cauda, tail and femur, thighbone) is a muscle found in the pelvic limb of mostly all animals possessing a tail, since it is a synapomorphy appeared on the Archosauria clade. It is thus found in felids (cats) and Mustela ('Weasels'), but also on crocodiles and birds." [Wikipedia:Caudofemoralis] synonym: "caudofemoralis muscle" EXACT [] synonym: "M. caudofemoralis" EXACT [] xref: EMAPA:36226 xref: Wikipedia:Caudofemoralis is_a: UBERON:0003663 ! hindlimb muscle relationship: never_in_taxon NCBITaxon:9606 {source="DOI:10.1002/ar.22919"} relationship: present_in_taxon NCBITaxon:399537 {source="DOI:10.1002/ar.22919"} relationship: present_in_taxon NCBITaxon:8492 {source="Wikipedia"} relationship: present_in_taxon NCBITaxon:8782 {source="Wikipedia"} relationship: present_in_taxon NCBITaxon:9681 {source="Wikipedia"} property_value: action_notes "The Caudofemoralis acts to flex the tail laterally to its respective side when the pelvic limb is bearing weight. When the pelvic limb is lifted off the ground, contraction of the Caudofemoralis causes the limb to abduct and the shank to extend by extending the hip joint (acetabulofemoral or coxofemoral joint)" xsd:string [Term] id: UBERON:0013222 name: otic notch def: "Otic notches are invagination in the posterior margin of the skull roof, one behind each orbit. Such notches are found in labyrinthodonts and some of their immediate ancestors, but not their reptilian descendants. The presence or absence of the otic notches is one of the traits used to separate the amniotes from the amphibian grade tetrapods." [Wikipedia:Otic_notch] xref: Wikipedia:Otic_notch is_a: UBERON:0005913 ! zone of bone organ relationship: never_in_taxon NCBITaxon:32524 relationship: part_of UBERON:0003113 ! dermatocranium property_value: function_notes "The notches have been interpreted as part of an auditory structure, and are often shown holding a tympanum similar to those seen in modern anurans. Analysis of the columella (the stapes in amphibians and reptiles) of labyrinthodonts however indicate it did not function in transmitting low energy vibrations, thus rendering them effectively deaf to airborne sound. The otic notch instead functioned as a spiracle, at least in the early forms" xsd:string [Term] id: UBERON:0013223 name: alveolar gland def: "In contrast to tubular glands, in the second main variety of gland, the secretory portion is enlarged and the lumen variously increased in size. These are termed alveolar glands (or saccular glands, or acinar glands, or acinous glands). Some sources draw a clear distinction between acinar and alveolar glands, based upon the shape of the lumen. A further complication in the case of the alveolar glands may occur in the form of still smaller saccular diverticuli growing out from the main sacculi. These are termed alveoli. The term 'tubulo-alveolar' (or 'tubulo-acinar', or 'compound tubulo-acinar', or 'compound tubulo-alveolar') is used to describe glands that start out as branched tubular, and branch further to terminate in alveoli. This type of gland is found in the salivary glands, esophagus, and mammary glands. The term 'racemose gland' is used to describe a 'compound alveolar gland' or 'compound acinar gland'." [Wikipedia:Alveolar_gland] synonym: "acinar gland" RELATED [Wikipedia:Alveolar_gland] synonym: "acinous gland" RELATED [Wikipedia:Alveolar_gland] synonym: "alveolar gland" RELATED [Wikipedia:Alveolar_gland] synonym: "saccular gland" RELATED [Wikipedia:Alveolar_gland] xref: Wikipedia:Alveolar_gland is_a: UBERON:0002530 {source="Wikipedia"} ! gland property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png" xsd:anyURI [Term] id: UBERON:0013224 name: Ciaccio's gland def: "Ciaccio's glands are small tubular accessory lacrimal glands (glandulae lacrimales accessoriae) found in the lacrimal caruncle of the eyelid. They are located in the upper border of the tarsus, approximately in the middle between the extremities of the tarsal glands. Sometimes they are situated slightly above the tarsus. There are usually 2 to 5 of these glands in the upper eyelid, and their function is to produce tears which are secreted onto the surface of the conjunctiva. They are named after Italian anatomist Giuseppe Vincenzo Ciaccio (1824b1901), who described these glands in 1874. They are sometimes called Wolfring's glands after Polish ophthalmologist Emilj von Wolfring (1832-1906), who described them during the same time period as did Ciaccio. Another type of accessory lacrimal gland are Krause's glands, which are smaller, more numerous than Ciaccio's glands and are found along the superior and inferior fornices of the conjunctival sac." [Wikipedia:Ciaccio's_glands] synonym: "gland of Wolfring" EXACT [ncithesaurus:Gland_of_Wolfring, Wikipedia:Ciaccio's_glands] synonym: "gland of Wolfring and Ciacco" EXACT [] synonym: "Wolfring's gland" EXACT [Wikipedia:Ciaccio's_glands] xref: NCIT:C32680 xref: SCTID:278361003 xref: Wikipedia:Ciaccio's_glands is_a: UBERON:0013226 ! accessory lacrimal gland is_a: UBERON:0013229 ! eyelid gland [Term] id: UBERON:0013226 name: accessory lacrimal gland def: "Serous gland with distended lumen. It includes the gland of Krause in the lacrimal sac and the gland of Wolfring on the inner surface of the upper eyelid. (NCI)." [ncithesaurus:Accessory_Lacrimal_Gland] synonym: "glandulae lacrimales accessoriae" EXACT OMO:0003011 [] xref: FMA:320425 xref: NCIT:C74586 xref: SCTID:278360002 xref: UMLS:C0266586 {source="ncithesaurus:Accessory_Lacrimal_Gland"} is_a: UBERON:0001817 ! lacrimal gland property_value: editor_note "may be re-classified as a sibling of lacrimal gland" xsd:string [Term] id: UBERON:0013227 name: crypt of Henle def: "Crypts of Henle are microscopic pockets found in scattered sections of the conjunctiva around the eyeball. They are responsible for secreting mucin, a proteinous substance that makes up the inner layer of tears. It coats the cornea to provide a hydrophilic layer that allows for even distribution of the tear film. The layer of mucin allows tears to glide evenly across the eye's surface[WP]." [Wikipedia:Crypts_of_Henle] synonym: "crypts of Henle" EXACT [Wikipedia:Crypts_of_Henle] synonym: "gland of Henle" EXACT [] synonym: "Henle's gland" EXACT [Wikipedia:Crypts_of_Henle] xref: SCTID:278362005 xref: Wikipedia:Crypts_of_Henle is_a: UBERON:0013226 ! accessory lacrimal gland [Term] id: UBERON:0013228 name: sweat gland of eyelid def: "Glands of Moll, also known as ciliary glands, are modified apocrine sweat glands that are found on the margin of the eyelid. They are next to the base of the eyelashes, and anterior to the Meibomian glands within the distal eyelid margin. These glands are relatively large and tubular-shaped. The glands of Moll are named after Dutch oculist Jacob Anton Moll (1832-1914). Glands of Moll empty into the adjacent lashes. Glands of Moll and Zeis secrete lipid that adds to the superficial layer of the tear film, retarding evaporation. The glands of Moll are prone to infection and blockage of its duct with sebum and cell debris. Blockage of the gland's duct causes swelling which can manifest itself as a stye." [Wikipedia:Gland_of_Moll] synonym: "ciliary gland" EXACT [FMA:59159] synonym: "ciliary gland of moll" EXACT [FMA:59159] synonym: "ciliary sweat gland of eyelid" EXACT [FMA:59159] synonym: "gland of Moll" EXACT [FMA:59159] synonym: "Moll's gland" EXACT [FMA:59159] xref: FMA:59159 xref: NCIT:C32679 xref: SCTID:280586002 xref: Wikipedia:Gland_of_Moll is_a: UBERON:0000382 ! apocrine sweat gland is_a: UBERON:0003605 ! eye skin gland is_a: UBERON:0013229 ! eyelid gland [Term] id: UBERON:0013229 name: eyelid gland def: "Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland)." [http://orcid.org/0000-0002-6601-2165] synonym: "gland of eyelid" EXACT [] xref: SCTID:280574000 is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015152 ! gland of ocular region relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0013230 name: nictitans gland def: "A gland producing tears in a third eyelid in the corner of each eye." [ncithesaurus:Gland_of_the_Third_Eyelid] comment: Disease notes: Prolapse of the Nicititans Gland is also known as Cherry Eye synonym: "gland of nictitating membrane" BROAD [] synonym: "gland of the third eyelid" BROAD [ncithesaurus:Gland_of_the_Third_Eyelid] synonym: "glandula palpebra tertia superficialis" RELATED OMO:0003011 [PMID:7559104] synonym: "superficial gland of the nictitating membrane" RELATED [PMID:7559104] synonym: "superficial gland of the third eyelid" RELATED [ISBN:1118473523] xref: NCIT:C77616 is_a: UBERON:0013229 ! eyelid gland is_a: UBERON:0015153 ! medial gland of ocular region relationship: never_in_taxon NCBITaxon:39107 {source="ISBN:1118473523"} relationship: part_of UBERON:0010207 ! nictitating membrane relationship: present_in_taxon NCBITaxon:10047 {source="ISBN:1118473523"} property_value: curator_notes "This gland is distinct from the other medial ocular gland, the Harderian gland, and is typified by clusters of glandular tissue within the nictitating membrane" xsd:string [Term] id: UBERON:0013231 name: sebaceous gland of eyelid def: "Any of the sebaceous glands that are in the eyelid. Examples: gland of Zeis (services eyelashes), gland of Meibom (tarsal gland - unconnected to eyelids)." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003484 ! eye sebaceous gland is_a: UBERON:0013229 ! eyelid gland [Term] id: UBERON:0013232 name: serous acinus def: "The secretory unit of a serous gland. The acinar portion is composed of serous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] synonym: "acinus of serous gland" EXACT [] xref: FMA:86279 is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0000409 ! serous gland [Term] id: UBERON:0013233 name: supraorbital gland def: "A lateral nasal gland that removes sodium chloride from the bloodstream." [Wikipedia:Supraorbital_gland] xref: Wikipedia:Supraorbital_gland is_a: UBERON:0004759 ! cranial salt gland is_a: UBERON:0012278 ! gland of nasal mucosa property_value: function_notes "The gland's function is similar to that of the kidneys, though it is much more efficient at removing salt, allowing Penguins to survive without access to fresh water. Contrary to popular belief, the gland does not directly convert saltwater to freshwater. The term supraorbital refers to the area just above the eye socket (which is known as the orbit of the eye. ) Living in saltwater environments would naturally pose a large problem for penguins because the ingestion of saltwater would be detrimental to a penguin's health. Although penguins do not directly drink water, it is taken in when they engulf prey. As a result, saltwater enters their system and must be effectively excreted. The supraorbital gland has thus enabled the penguins' survival in such environments due to its water-filtering capability. The gland is located just above the eyes and surrounds a capillary in the head. This capillary constantly strains out the salt in the saltwater that a penguin takes in. Since the byproduct of the gland has roughly five times as much salt as would normally be found in the animal's fluids, the supraorbital gland is highly efficient. The penguin excretes the salt byproduct as a brine through its bill. Often, the fluid drips out, and this gives the appearance of a runny nose. However, the fluid may also be sneezed out. In the absence of saltwater, caused by captivity, the supraorbital gland will lie dormant as it has no other purpose. Having a dormant supraorbital gland does not negatively affect the health of a penguin" xsd:string [Term] id: UBERON:0013234 name: violet gland def: "The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular." [Wikipedia:Violet_gland] synonym: "supracaudal gland" RELATED [] xref: Wikipedia:Violet_gland is_a: UBERON:0011252 ! scent gland relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0013235 name: ventrum def: "A major organism subdivisionthat is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." [BSPO:0000068, UBERONREF:0000006] synonym: "front" BROAD [] synonym: "front of body proper" EXACT [FMA:259204] synonym: "ventral part of organism" EXACT [] synonym: "ventral region" BROAD [] synonym: "ventral region of organism" EXACT [] xref: FMA:259204 is_a: UBERON:0000475 ! organism subdivision property_value: has_relational_adjective "ventral" xsd:string [Term] id: UBERON:0013236 name: ventral trunk def: "The subdivision of the trunk that overlaps with the ventrum." [http://orcid.org/0000-0002-6601-2165] synonym: "anterolateral part of trunk" EXACT [FMA:25055] synonym: "front of trunk" EXACT [FMA:25055] synonym: "trunk front" EXACT [FMA:25055] synonym: "trunk proper" EXACT [FMA:25055] xref: FMA:25055 is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk relationship: part_of UBERON:0013235 ! ventrum property_value: external_definition "Subdivision of trunk which is demarcated from the back of trunk by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall and from the limbs by the inguinal folds; together with the back of trunk, it constitutes the trunk. Examples: There is only one trunk proper[FMA:25055]." xsd:string {source="FMA:25055"} [Term] id: UBERON:0013237 name: genital papilla of vulva def: "The genital papilla is a part of female external genitalia not present in humans, which appears as a small, fleshy flab of tissue. The papilla covers the opening of the vagina." [Wikipedia:Genital_papilla] synonym: "genital papillae" RELATED OMO:0003004 [] synonym: "mammalian genital papilla" EXACT [] xref: Wikipedia:Genital_papilla is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000997 ! mammalian vulva [Term] id: UBERON:0013238 name: future glans is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0011757 ! differentiated genital tubercle [Term] id: UBERON:0013239 name: future glans penis def: "A future glans that is part of a male genital tubercle." [OBOL:automatic] synonym: "glans of male genital tubercle" EXACT [] xref: EMAPA:29252 is_a: UBERON:0013238 ! future glans relationship: part_of UBERON:0006261 {source="EMAPA"} ! male genital tubercle [Term] id: UBERON:0013240 name: future glans clitoris def: "A future glans that is part of a female genital tubercle." [OBOL:automatic] synonym: "glans of female genital tubercle" EXACT [] xref: EMAPA:19170 is_a: UBERON:0013238 ! future glans relationship: part_of UBERON:0006233 {source="EMAPA"} ! female genital tubercle [Term] id: UBERON:0013241 name: embryonic urethral groove def: "The precursor of the urethra." [http://orcid.org/0000-0002-6601-2165] synonym: "sulcus urethralis primarius" EXACT OMO:0003011 [Wikipedia:Urethral_groove] synonym: "urethral groove" EXACT [] synonym: "urethral sulcus" EXACT [] xref: SCTID:361531004 xref: Wikipedia:Urethral_groove is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold property_value: taxon_notes "In humans, the urethral groove is a temporary linear indentation on the underside (ventral side) of the male penis during embryonic development. It typically appears around 8 weeks of gestation and becomes closed into a normal male urethra by the 12th week" xsd:string {source="Wikipedia:Urethral_groove"} [Term] id: UBERON:0013244 name: vaginal plate def: "The vaginal plate is a precursor to the inferior portion of the vagina. They form from sinovaginal bulbs." [Wikipedia:Vaginal_plate] xref: NCIT:C34325 xref: UMLS:C1519928 {source="ncithesaurus:Vaginal_Plate"} xref: Wikipedia:Vaginal_plate is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0013245 ! sinovaginal bulb relationship: part_of UBERON:0000164 ! primitive urogenital sinus [Term] id: UBERON:0013245 name: sinovaginal bulb def: "Solid evaginations of the UG sinus that develops into a vaginal plate that which will will eventually canalize to form the inferior portion of the vagina." [https://orcid.org/0000-0002-6601-2165] xref: NCIT:C34297 xref: UMLS:C1519330 {source="ncithesaurus:Sinovaginal_Bulb"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000164 ! primitive urogenital sinus [Term] id: UBERON:0013247 name: male paramesonephric duct def: "An epithelial tube that develops from a Mullerian duct in a male. Later degenerates." [http://orcid.org/0000-0002-6601-2165] synonym: "degenerating mesonephric portion of male paramesonephric duct" RELATED [EMAPA:29161] xref: EHDAA2:0001052 xref: EMAPA:29161 xref: EMAPA:35661 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0003890 {source="EHDAA2"} ! Mullerian duct relationship: part_of UBERON:0000079 {source="EHDAA2"} ! male reproductive system property_value: editor_note "consider separating the duct from the degenerating portion, as in EMAPA" xsd:string [Term] id: UBERON:0013248 name: paradidymis def: "A small collection of convoluted tubules, situated in front of the lower part of the cord above the head of the epididymis. These tubes are lined with columnar ciliated epithelium, and probably represent the remains of a part of the Wolffian body but are functionless and vestigial. The Wolffian body operates as a kidney (metanephros) in fishes and amphibians, but the corresponding tissue is co-opted to form parts of the male reproductive system in other classes of vertebrate. The paradidymis represents a remnant of an unused, atrophied part of the Wolffian body[WP,modified]." [Wikipedia:Paradidymis] synonym: "organ of Giraldes" EXACT [FMA:74055] synonym: "organ of Giraldés" EXACT [] synonym: "Waldeyer's organ" EXACT [FMA:74055] xref: FMA:74055 xref: SCTID:279643005 xref: Wikipedia:Paradidymis is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0013249 name: paroophoron def: "A collection of a few scattered rudimentary tubules child, situated in the broad ligament between the epoophoron and the uterus." [Wikipedia:Paroophoron] synonym: "Kobelt's tubules" EXACT [FMA:18692] synonym: "parooephoron" RELATED [Wikipedia:Paroophoron] synonym: "paroöphoron" RELATED [Wikipedia:Paroophoron] xref: FMA:18692 xref: Wikipedia:Paroophoron is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0013250 name: vesicular appendage of epoophoron def: "In connection with the fimbriae of the uterine tube, or with the broad ligament close to them, there are frequently one or more small pedunculated vesicles. These are termed the vesicular appendages of the epoophoron." [Wikipedia:Vesicular_appendages_of_epoophoron] synonym: "appendage of epoophoron" RELATED [] synonym: "appendage of epoöphoron" RELATED [] synonym: "appendices vesiculosae" RELATED [Wikipedia:Vesicular_appendages_of_epoophoron] synonym: "appendices vesiculosae epoophori" RELATED OMO:0003011 [] synonym: "appendix vesiculosus" EXACT [FMA:18696] synonym: "female cystic vesicular appendage" EXACT [MA:0003241] synonym: "hydatid of Morgagni" BROAD [FMA:18696, Wikipedia:Hydatid_of_Morgagni] synonym: "vesicular appendage of epoophoron" RELATED [FMA:18696] synonym: "vesicular appendage of epoöphoron" RELATED [] xref: EMAPA:18978 xref: FMA:18696 xref: MA:0003241 xref: Wikipedia:Vesicular_appendages_of_epoophoron is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure relationship: develops_from UBERON:0003890 {notes="cranial end", source="Wikipedia"} ! Mullerian duct relationship: part_of UBERON:0000474 ! female reproductive system property_value: external_definition "one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]." xsd:string {source="http://medical-dictionary.thefreedictionary.com/Hydatid+of+Morgagni"} [Term] id: UBERON:0013262 name: remnnant of ductus deferens def: "Remnant in a female of the portion of the embryonic mesonephric duct that develops into the ductus deferens in males." [http://www.medilexicon.com/medicaldictionary.php?t=98549] synonym: "ductus deferens vestige" EXACT [FMA:76609] synonym: "ductus deferens vestigialis" EXACT OMO:0003011 [] synonym: "vestige of ductus deferens" EXACT [FMA:76609] xref: FMA:76609 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure relationship: develops_from UBERON:0003890 {source="Wikipedia"} ! Mullerian duct relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0013277 name: remnant of processus vaginalis def: "Incompletely obliterated remnants of the vaginal process of the peritoneum remaining in the spermatic cord." [http://www.medilexicon.com/medicaldictionary.php?t=98550] synonym: "processus vaginalis vestige" EXACT [FMA:77300] synonym: "vestige of processus vaginalis" EXACT [FMA:77300] xref: FMA:77300 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure relationship: develops_from UBERON:0005344 ! peritoneal vaginal process relationship: part_of UBERON:0005352 ! spermatic cord [Term] id: UBERON:0013278 name: canal of Nuck def: "A patent pouch of peritoneum extending into the labia majora of women. It is analogous to the processus vaginalis in males. The pouch accompanies the gubernaculum during development of the urinary and reproductive organs, more specifically during the descent of the ovaries, and normally obliterates." [Wikipedia:Canal_of_Nuck] synonym: "canal of nuck" RELATED [Wikipedia:Canal_of_Nuck] synonym: "nuck%27s canal" RELATED [Wikipedia:Canal_of_Nuck] synonym: "persistent processus vaginalis" RELATED [MP:0009217] synonym: "processus vaginalis peritonei femininus" RELATED OMO:0003011 [Wikipedia:Canal_of_Nuck] xref: Wikipedia:Canal_of_Nuck is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 {source="cjm"} ! remnant of embryonic structure relationship: develops_from UBERON:0005344 ! peritoneal vaginal process relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0013279 name: diaphysis of fibula def: "A diaphysis that is part of a fibula[Automatically generated definition]." [OBOL:automatic, Wikipedia:Body_of_fibula] synonym: "body of fibula" EXACT [FMA:33738] synonym: "corpus fibulae" EXACT [FMA:TA] synonym: "fibula diaphysis" EXACT [FMA:33738] synonym: "shaft of fibula" EXACT [FMA:33738] xref: EMAPA:37892 {source="MA:th"} xref: FMA:33738 xref: SCTID:302528006 xref: Wikipedia:Body_of_fibula is_a: UBERON:0004769 ! diaphysis relationship: part_of UBERON:0001446 ! fibula property_value: external_definition "The body of fibula presents four borders - the antero-lateral, the antero-medial, the postero-lateral, and the postero-medial; and four surfaces - anterior, posterior, medial, and lateral[Wikipedia:Body_of_fibula]." xsd:string {source="Wikipedia:Body_of_fibula"} [Term] id: UBERON:0013280 name: diaphysis of tibia def: "A diaphysis that is part of a tibia." [OBOL:automatic, Wikipedia:Body_of_tibia] synonym: "body of the tibia" RELATED [Wikipedia:Body_of_tibia] synonym: "body of tibia" EXACT [FMA:33125] synonym: "corpus tibiae" EXACT [FMA:TA] synonym: "shaft of tibia" EXACT [FMA:33125] synonym: "shaft of tibia" RELATED [Wikipedia:Body_of_tibia] synonym: "tibial diaphysis" EXACT [FMA:33125] xref: EMAPA:37770 {source="MA:th"} xref: FMA:33125 xref: MA:0003049 xref: SCTID:302525009 xref: Wikipedia:Body_of_tibia is_a: UBERON:0004769 ! diaphysis relationship: part_of UBERON:0000979 ! tibia property_value: external_definition "The body of the tibia has three borders and three surfaces[Wikipedia:Body_of_tibia]." xsd:string {source="Wikipedia:Body_of_tibia"} [Term] id: UBERON:0013397 name: stratum argenteum of choroid def: "A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults." [PMID:14738502] synonym: "choroid stratum argenteum" EXACT [] synonym: "stratum argenteum" BROAD [PMID:14738502] is_a: UBERON:0000957 ! lamina relationship: part_of UBERON:0001776 ! optic choroid relationship: present_in_taxon NCBITaxon:8065 property_value: taxon_notes "In species known to have a stratum argenteum as adults, like the toadfish (Toad- fishes), the tapetum lucidum is absent or vestigial and there is little choroidal melanin[PMID:14738502]" xsd:string [Term] id: UBERON:0013398 name: choroidal gland def: "A gland that is part of a optic choroid." [OBOL:automatic] comment: Requires review is_a: UBERON:0001593 {source="FEED:rd"} ! venous plexus is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0011362 ! cranial blood vasculature relationship: part_of UBERON:0001776 ! optic choroid property_value: external_definition "a gland on the dorsal half of the fish eyeball[http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid]l" xsd:string {source="http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid"} property_value: external_definition "Teleosts bear a body of capillary adjacent to the optic nerve called the choroidal gland. Though its function is not known, it is believed to be a supplemental oxygen carrier[Wikipedia:Choroid#In_bony_fish]." xsd:string {source="Wikipedia:Choroid#In_bony_fish"} [Term] id: UBERON:0013399 name: blood vessel layer of choroid synonym: "Haller's layer" NARROW [FMA:58435] synonym: "lamina choroideae vasculosa" EXACT OMO:0003011 [FMA:58435, FMA:TA] synonym: "lamina vasculosa (choroid)" EXACT [FMA:58435] synonym: "lamina vasculosa of choroid" EXACT [FMA:58435] synonym: "outer layer of choroid proper" EXACT [FMA:58435] synonym: "Sattler's layer" NARROW [FMA:58435] synonym: "vessel layer of choroid" EXACT [FMA:58435] xref: FMA:58435 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001776 {source="FMA"} ! optic choroid property_value: external_definition "a layer of medium-diameter blood vessels of the choroid, a layer of the eye[Wikipedia:Sattler's_layer]." xsd:string {source="Wikipedia:Sattler's_layer"} [Term] id: UBERON:0013403 name: asterion of skull def: "The asterion is the point on the skull corresponding to the posterior end of the parietomastoid suture." [Wikipedia:Asterion_(anatomy)] synonym: "asterion" RELATED [Wikipedia:Asterion_(anatomy)] xref: FMA:76625 xref: Wikipedia:Asterion_(anatomy) is_a: UBERON:0006983 {source="FMA"} ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/Asterion.PNG" xsd:anyURI [Term] id: UBERON:0013406 name: bregma def: "The bregma is the anatomical point on the skull at which the coronal suture is intersected perpendicularly by the sagittal suture." [Wikipedia:Bregma] xref: FMA:264776 xref: Wikipedia:Bregma is_a: UBERON:0006983 {source="FMA"} ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/24/Kort-lang-skalle.gif" xsd:anyURI property_value: external_definition "Anatomical cranial point where the coronal and sagittal suture lines intersect[FMA:264776]." xsd:string {source="FMA:264776"} [Term] id: UBERON:0013411 name: cranial cavity def: "Anatomical cavity that is the lumen of the skull and contains the brain." [UBERON:cjm] synonym: "cavitas cranii" EXACT OMO:0003011 [FMA:9644, FMA:TA] synonym: "intracranial cavity" RELATED [Wikipedia:Cranial_cavity] synonym: "intracranial space" RELATED [Wikipedia:Cranial_cavity] xref: EMAPA:37497 {source="MA:th"} xref: FMA:9644 xref: MA:0003061 xref: NCIT:C77638 xref: neuronames:2806 xref: SCTID:264452006 xref: UMLS:C0230041 {source="ncithesaurus:Cranial_Cavity"} xref: Wikipedia:Cranial_cavity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg" xsd:anyURI [Term] id: UBERON:0013412 name: crotaphion def: "The crotaphion refers to two points on the skull at the tips of the greater wing of sphenoid bone. It is near the pterion." [Wikipedia:Crotaphion] xref: Wikipedia:Crotaphion is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull [Term] id: UBERON:0013417 name: epicranium def: "The Epicranium is the medical term for the collection of structures covering the cranium. It consists of the muscles, aponeurosis, and skin." [Wikipedia:Epicranium] xref: SCTID:362625008 xref: Wikipedia:Epicranium is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0000033 ! head property_value: editor_note "TODO - add parts" xsd:string [Term] id: UBERON:0013420 name: groove for sigmoid sinus def: "Groove for Sigmoid Sinus is a groove in the posterior cranial fossa." [Wikipedia:Groove_for_sigmoid_sinus] xref: FMA:57122 xref: Wikipedia:Groove_for_sigmoid_sinus is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0008788 ! posterior cranial fossa property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png" xsd:anyURI [Term] id: UBERON:0013422 name: infratemporal fossa def: "The infratemporal fossa is an irregularly shaped cavity, situated below and medial to the zygomatic arch. Boundaries defined by: anteriorly, by the infratemporal surface of the maxilla and the ridge which descends from its zygomatic process posteriorly, by the articular tubercle of the temporal and the spinal angularis of the sphenoid superiorly, by the greater wing of the sphenoid below the infratemporal crest, and by the under surface of the temporal squama, containing the foramen ovale, which transmits the mandibular branch of the trigeminal nerve, and the foramen spinosum, which transmits the middle meningeal artery inferiorly, by the medial pterygoid muscle attaching to the mandible medially, by the lateral pterygoid plate laterally, by the ramus of mandible, which contains the mandibular foramen, leading to the mandibular canal through which the inferior alveolar nerve passes. This also contains the lingula, a triangular piece of bone that overlies the mandibular foramen antero-medially. Finally, the mylohyoid groove descends obliquely transmitting the mylohyoid nerve the only motor branch of the anterior division of the trigeminal nerve." [Wikipedia:Infratemporal_fossa] synonym: "fossa infratemporalis" RELATED [Wikipedia:Infratemporal_fossa] synonym: "infratemporal" RELATED [Wikipedia:Infratemporal_fossa] synonym: "pterygomaxillary fossa" RELATED [Wikipedia:Infratemporal_fossa] xref: FMA:75308 xref: MESH:D000080884 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:260616009 xref: Wikipedia:Infratemporal_fossa is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png" xsd:anyURI [Term] id: UBERON:0013423 name: jugal point def: "The jugal point is the point at the anterior end of the upper border of the zygomatic arch where the masseteric and maxillary edges meet at an angle." [Wikipedia:Jugal_point] xref: Wikipedia:Jugal_point is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull [Term] id: UBERON:0013424 name: anatomical point connecting sagittal and lambdoidal sutures def: "The occipital angle is rounded and corresponds with the point of meeting of the sagittal and lambdoidal sutures-a point which is termed the lambda (after the Greek letter of the same name); in the fetus this part of the skull is membranous, and is called the posterior fontanelle." [Wikipedia:Lambda_(anatomy)] synonym: "lambda" BROAD [Wikipedia:Lambda_(anatomy)] synonym: "posterior fontanelle" RELATED [Wikipedia:Lambda_(anatomy)] xref: FMA:264773 xref: Wikipedia:Lambda_(anatomy) is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray1193.svg" xsd:anyURI [Term] id: UBERON:0013426 name: obelion def: "The point of the sagittal suture which is on a level with the parietal foramina." [Wikipedia:Obelion] xref: FMA:264774 xref: Wikipedia:Obelion is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull [Term] id: UBERON:0013427 name: occipital bun def: "A prominent bulge, or projection, of the occipital bone at the back of the skull[WP]." [Wikipedia:Occipital_bun] xref: Wikipedia:Occipital_bun is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001676 ! occipital bone relationship: present_in_taxon NCBITaxon:63221 property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Neanderthal_profile.png" xsd:anyURI property_value: taxon_notes "Occipital buns are important in scientific descriptions of classic Neanderthal crania. While common among many of mankind's ancestors, primarily robust relatives rather than gracile, the protrusion is relatively rare in modern Homo sapiens.." xsd:string {source="Wikipedia:Occipital_bun", taxon="NCBITaxon:63221"} [Term] id: UBERON:0013428 name: ophryon def: "The ophryon is the point in the forehead just above the optic foramen, or eyesocket, and glabella." [Wikipedia:Ophryon] xref: FMA:284930 xref: Wikipedia:Ophryon is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull [Term] id: UBERON:0013436 name: porion def: "The porion is the point on the human skull located at the upper margin of each ear canal (external auditory meatus, external acoustic meatus). It underlies the tragus. The anatomical landmark has significance in biological anthropology and craniometry." [Wikipedia:Porion] xref: FMA:264711 xref: Wikipedia:Porion is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png" xsd:anyURI [Term] id: UBERON:0013442 name: postorbital process def: "The Postorbital Process marks the rear, upper edge of the eye socket and is a projection from the frontal bone." [Wikipedia:Postorbital_process] xref: Wikipedia:Postorbital_process is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] id: UBERON:0013445 name: pterygomaxillary fissure def: "The pterygomaxillary fissure is a fissure of the human skull. It is vertical, and descends at right angles from the medial end of the inferior orbital fissure; it is a triangular interval, formed by the divergence of the maxilla from the pterygoid process of the sphenoid. It connects the infratemporal with the pterygopalatine fossa, and transmits the terminal part of the maxillary artery. Alveolar branches of the maxillary nerve go from the pterygopalatine fossa to the infratemporal region via this fissure. In older texts, the pterygomaxillary fissure is sometimes called the pterygopalatine fissure." [Wikipedia:Pterygomaxillary_fissure] xref: FMA:76627 xref: Wikipedia:Pterygomaxillary_fissure is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png" xsd:anyURI [Term] id: UBERON:0013447 name: sagittal crest of skull def: "A ridge of bone running lengthwise along the midline of the top of the skull of many mammalian and reptilian skulls and serves as an attachment site for the temporailis muscle[WP,modified]." [Wikipedia:Sagittal_crest] synonym: "crista sagittalis externa" EXACT [] synonym: "sagittal crest" BROAD [] synonym: "sagittal ridge" RELATED [] xref: Wikipedia:Sagittal_crest is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0003113 ! dermatocranium property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/43/Paranthropus_aethiopicus.JPG" xsd:anyURI property_value: external_ontology_notes "Compare with: AAO:0000384 parasagittal crest (UBERON:0013402)" xsd:string {external_ontology="AAO"} property_value: function_notes "The sagittal crest serves primarily for attachment of the temporalis muscle, which is one of the main chewing muscles" xsd:string property_value: taxon_notes "Skulls of some dinosaur species, including tyrannosaurs, possessed well developed sagittal crests. Among mammals, dogs, cats, lions, and many other carnivores have sagittal crests, as do some leaf eaters, including tapirs and some apes. Sagittal crests are found in robust great apes, and some early hominins. Prominent sagittal crests are found among male gorillas and orangutans, and do occur but only rarely in male chimpanzees such as Bili Apes" xsd:string [Term] id: UBERON:0013448 name: sagittal keel def: "The Sagittal keel (torus) is a thickening of bone on part or all of the midline of the frontal bone, or parietal bones where they meet along the sagittal suture, or on both bones.." [Wikipedia:Sagittal_keel] synonym: "sagittal torus" RELATED [] xref: Wikipedia:Sagittal_keel is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0003113 ! dermatocranium property_value: taxon_notes "Sagittal keels occur in Homo erectus and occasionally Homo heidelbergensis, where they probably served as an armour against shock to the roof of the skull, and as the attachment point for the temporalis muscles. Most Homo sapiens lost them likely as part of the general trend toward thinning of the cranial bones during the Pleistocene, to make room for larger brains. However there is a very small portion of modern humans who have this, but its function and etiology are unknown. Patrick Stewart of Star Trek and the martial artist Shi Yan Ming present good examples of modern humans with this feature." xsd:string {source="Wikipedia:Occipital_bun", taxon="Homo erectus"} [Term] id: UBERON:0013450 name: simian shelf def: "A bony buttress on the inner surface of the foremost part of the ape mandible, functioning to reinforce the mandible." [http://web.archive.org/web/20060830160800/www.anth.ucsb.edu/glossary/glossary.html] xref: Wikipedia:Simian_shelf is_a: UBERON:0005913 ! zone of bone organ relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0013454 name: spheno-maxillary fossa def: "The speno-maxillary fossa is a small triangular space situated at the angle of the junction of the spheno-maxillary and pterygo-maxillary fissures, and placed beneath the apex of the orbit. It is formed above by the under surface of the body of the sphenoid and by the orbital process of the palate bone." [Wikipedia:Spheno-maxillary_fossa] xref: NCIT:C33584 xref: UMLS:C1519450 {source="ncithesaurus:Sphenomaxillary_Fossa"} xref: Wikipedia:Spheno-maxillary_fossa is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull [Term] id: UBERON:0013455 name: spheno-petrosal fissure def: "The sphenopetrosal fissure (or sphenopetrosal suture) is the cranial suture between the sphenoid bone and the petrous portion of the temporal bone. It is in the middle cranial fossa." [Wikipedia:Sphenopetrosal_fissure] synonym: "fissura sphenopetrosa" EXACT [FMA:TA] synonym: "sphenopetrosal fissure" EXACT [FMA:75038] xref: FMA:75038 xref: Wikipedia:Sphenopetrosal_fissure is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png" xsd:anyURI [Term] id: UBERON:0013459 name: stephanion def: "The point where the upper temporal line cuts the coronal suture is named the stephanion." [Wikipedia:Stephanion] xref: FMA:264723 xref: Wikipedia:Stephanion is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/ae/Gray188-Coronal_suture.png" xsd:anyURI [Term] id: UBERON:0013460 name: suprainiac fossa alt_id: UBERON:0013470 def: "The suprainiac fossa is an elliptic depression on the occiput above the superior nuchal line, or inion." [Wikipedia:Suprainiac_fossa] xref: Wikipedia:Suprainiac_fossa is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull relationship: present_in_taxon NCBITaxon:63221 {source="Wikipedia:Neanderthal_anatomy"} [Term] id: UBERON:0013462 name: sylvian point def: "The Sylvian point is the point on the human skull nearest the Sylvian fissure and is located about 30 millimeters behind the Zygomatic process of frontal bone." [Wikipedia:Sylvian_point] xref: FMA:49458 xref: Wikipedia:Sylvian_point is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0013463 name: temporal fossa def: "The temporal fossa is a shallow depression on the side of the skull bounded by the temporal lines and terminating below the level of the zygomatic arch." [Wikipedia:Temporal_fossa] xref: FMA:75307 xref: NCIT:C33742 xref: SCTID:137157009 xref: UMLS:C0230010 {source="ncithesaurus:Temporal_Fossa"} xref: Wikipedia:Temporal_fossa is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Fossatemporalis.PNG" xsd:anyURI [Term] id: UBERON:0013466 name: obsolete zygomasseteric system def: "The zygomasseteric system (or zygomasseteric structure) in rodents is the anatomical arrangement of the masseter muscle of the jaw and the zygomatic arch of the skull. The anteroposterior or propalinal (front-to-back) motion of the rodent jaw is enabled by an extension of the zygomatic arch and the division of the masseter into three distinct parts. The main types are described as protrogomorphous, sciuromorphous, hystricomorphous, and myomorphous." [Wikipedia:Zygomasseteric_system] comment: obsoleted as it did not represent a structure is_obsolete: true [Term] id: UBERON:0013468 name: zygomatic fossa def: "The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary." [Wikipedia:Zygomatic_fossa] xref: NCIT:C33898 xref: Wikipedia:Zygomatic_fossa is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0002500 ! zygomatic arch [Term] id: UBERON:0013469 name: external occipital protuberance def: "Near the middle of the occipital squama is the external occipital protuberance, and extending lateralward from it on either side is the superior nuchal line, and above this the faintly marked highest nuchal line. It is less pronounced in females. The inion is the highest point of the external occipital protuberance. a projection on the external surface of the squamous part of the occipital bone in the midline." [Wikipedia:External_occipital_protuberance] synonym: "inion" RELATED [Wikipedia:Inion] xref: FMA:75752 xref: SCTID:139582005 xref: Wikipedia:External_occipital_protuberance is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0007170 {source="FMA"} ! squamous part of occipital bone property_value: external_definition "The external occipital protuberance is a bony prominence occuring on the large area ventral to the external sagittal crest. It functions as the attachment site for the funicular part of the nuchal ligament[MURDOCH:734]." xsd:string {source="MURDOCH:734"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/166" xsd:anyURI [Term] id: UBERON:0013471 name: retromolar space def: "The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP]." [Wikipedia:Retromolar_space] synonym: "retromolar gap" EXACT [Wikipedia:Retromolar_space] xref: Wikipedia:Retromolar_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001684 ! mandible relationship: present_in_taxon NCBITaxon:63221 property_value: taxon_notes "Retromolar gap is found in some Neandertals because they had midfacial prognathism. This caused the lower toothrow to move forward, which led to the retromolar gap.." xsd:string {source="Wikipedia:Neanderthal_anatomy", taxon="NCBITaxon:63221"} [Term] id: UBERON:0013472 name: upper esophagus def: "The upper one third of esophagus in which the muscle layer is composed of muscle cells of the striated type." [ncithesaurus:Upper_Third_of_the_Esophagus] synonym: "proximal part of esophagus" RELATED [] synonym: "upper third of esophagus" RELATED [] xref: NCIT:C12253 xref: SCTID:276801001 xref: UMLS:C0227187 {source="ncithesaurus:Upper_Third_of_the_Esophagus"} is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0013473 name: lower esophagus def: "The lower one third of the esophagus in which the muscle layer is composed of muscle cells predominantly of the smooth type." [ncithesaurus:Lower_Third_of_the_Esophagus] synonym: "distal part of esophagus" RELATED [] synonym: "esophagus distal third" EXACT [PMID:16900308] synonym: "lower third of esophagus" RELATED [] xref: NCIT:C12255 xref: SCTID:362129001 xref: UMLS:C0227191 {source="ncithesaurus:Lower_Third_of_the_Esophagus"} is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0013474 name: middle part of esophagus def: "The middle one third of the esophagus in which the muscle layer is composed of muscle cells of the striated and smooth types." [ncithesaurus:Middle_Third_of_the_Esophagus] synonym: "middle third of esophagus" RELATED [] xref: NCIT:C12254 xref: SCTID:276802008 xref: UMLS:C0227189 {source="ncithesaurus:Middle_Third_of_the_Esophagus"} is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0013475 name: gustatory gland def: "A serous salivary gland which resides adjacent to the moats surrounding the circumvallate papillae in the posterior one-third of the tongue, anterior to the terminal sulcus." [Wikipedia:Von_Ebner's_gland] subset: pheno_slim synonym: "posterior deep lingual gland" EXACT [PMCID:PMC2667924] synonym: "posterior lingual serous gland" EXACT [MGI:anna] synonym: "von Ebner gland" EXACT [Wikipedia:Von_Ebner's_gland] synonym: "von Ebner's gland" EXACT [Wikipedia:Von_Ebner's_gland] xref: FMA:293448 xref: Wikipedia:Von_Ebner's_gland is_a: UBERON:0000409 ! serous gland is_a: UBERON:0001044 ! saliva-secreting gland is_a: UBERON:0003409 ! gland of tongue relationship: part_of UBERON:0010033 ! posterior part of tongue property_value: function_notes "posterior deep lingual glands produce lingual lipase, which hydrolyzes triacylglycerols in the acidic gastric lumen, the first step in the digestion of dietary fat (Hamosh & Scow, 1973; Hamosh & Burns, 1977). In view of their close proximity to the lingual lymphatic tissues, the glands were also thought to be involved in antimicrobial action and local immune response (Nair & Schroeder, 1983)[PMCID:PMC2667924]" xsd:string property_value: structure_notes "a group of tubulo-acinar serous glands located beneath the circumvallate and foliate papillae of the tongue and their ducts open into the trough at the base of the papillae. The saliva from posterior deep lingual glands is known to modulate the microenvironment at taste reception sites, and affect chemoreception (Gurkan & Bradley, 1988) and it is an important source of growth factors for taste receptor cells (Morris-Wiman et al. 2000)[PMCID:PMC2667924]" xsd:string [Term] id: UBERON:0013476 name: dermal layer of tongue def: "Missing definition for term UBERON:0013476. Please replace it using linked reference." [PMID:23153189] subset: human_reference_atlas synonym: "tongue (dermal layer)" EXACT [] is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001723 ! tongue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013477 name: blowhole def: "A hole at the top of a cetacean's head through which the animal breathes air." [Wikipedia:Blowhole_(anatomy)] synonym: "blowhole slit" NARROW [] xref: Wikipedia:Blowhole_(anatomy) is_a: UBERON:0005928 ! external naris property_value: taxon_notes "Baleen whales have two blowholes positioned in a V-shape while toothed whales have only one blowhole. The blowhole of a sperm whale, a toothed whale, is located left of centre in the frontal area of the snout, and is actually its left nostril, while the right nostril lacks an opening to the surface despite the fact that its nasal passage is otherwise well developed." xsd:string [Term] id: UBERON:0013478 name: cecal tonsil def: "A thickened round patch of lymphoid tissue located at the ileocecal junction adjacent to the sacculus rotundus." [ISBN:0824754077] synonym: "caecal tonsil" EXACT [] synonym: "cecal GALT" RELATED [] xref: SCTID:14239003 is_a: UBERON:0001962 ! gut-associated lymphoid tissue relationship: part_of UBERON:0000314 ! cecum mucosa property_value: taxon_notes "In avians the polycryptic cecal tissue is similar to the mammalian palatine tonsil" xsd:string [Term] id: UBERON:0013479 name: lung endothelium def: "A blood vessel endothelium that is part of a lung [Automatically generated definition]." [OBOL:automatic] synonym: "respiratory endothelium" RELATED [BTO:0004128] xref: BTO:0004128 xref: CALOHA:TS-0573 is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0004702 ! respiratory system blood vessel endothelium [Term] id: UBERON:0013481 name: crypt of Lieberkuhn of ileum def: "An intestinal crypt that is located in the ileum." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "ileal crypt" EXACT [] synonym: "ileal crypt of Lieberkuhn" EXACT [] synonym: "ileal intestinal crypt" EXACT [] xref: EMAPA:37839 {source="MA:th"} xref: FMA:269061 is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine relationship: part_of UBERON:0008344 {source="FMA"} ! intestinal villus of ileum [Term] id: UBERON:0013482 name: crypt of Lieberkuhn of duodenum def: "An intestinal crypt that is located in the duodenum." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "duodenal crypt" EXACT [] synonym: "duodenal crypt of Lieberkuhn" EXACT [] xref: EMAPA:37838 {source="MA:th"} xref: FMA:269063 is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duodenum [Term] id: UBERON:0013483 name: crypt of Lieberkuhn of jejunum def: "An intestinal crypt that is located in the jejunum." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "jejunal crypt" EXACT [] synonym: "jejunal crypt of Lieberkuhn" EXACT [] xref: EMAPA:37840 {source="MA:th"} xref: FMA:269065 is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine relationship: part_of UBERON:0008343 {source="FMA"} ! intestinal villus of jejunum [Term] id: UBERON:0013485 name: crypt of Lieberkuhn of colon def: "An intestinal crypt that is located in the colon. The colonic crypts of Lieberkühn are straight and unbranched and lined largely with goblet cells." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "colonic crypt" EXACT [] synonym: "colonic crypt of Lieberkuhn" EXACT [] xref: SCTID:19447003 is_a: UBERON:0001984 ! crypt of Lieberkuhn of large intestine relationship: part_of UBERON:0000317 ! colonic mucosa relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013486 name: crypt of Lieberkuhn of appendix def: "An intestinal crypt that is located in the appendix." [http://orcid.org/0000-0002-6601-2165] synonym: "appendiceal crypt" EXACT [] synonym: "appendiceal crypt of Lieberkuhn" EXACT [] xref: SCTID:21512007 is_a: UBERON:0001984 ! crypt of Lieberkuhn of large intestine relationship: part_of UBERON:0004989 ! mucosa of appendix [Term] id: UBERON:0013487 name: epidermal ridge of digit def: "The grooves in the outermost layer of skin on the palms of the hands and soles of the feet where sweat glands open." [ncithesaurus:Epidermal_Ridges] synonym: "dermatoglyph" RELATED [https://ghr.nlm.nih.gov/handbook/traits/fingerprints] synonym: "epidermal ridge" RELATED [] synonym: "fingerprint" RELATED [] synonym: "friction ridge" RELATED [] synonym: "plantar print" RELATED [MESH:E05.256] xref: NCIT:C32524 xref: UMLS:C1516920 {source="ncithesaurus:Epidermal_Ridges"} is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0002544 ! digit relationship: present_in_taxon NCBITaxon:9443 [Term] id: UBERON:0013488 name: panniculus adiposus def: "The panniculus adiposus is the fatty layer of the subcutaneous tissues, superficial to a deeper vestigial layer of muscle, the panniculus carnosus. An example is the Fascia of Camper. Another example is the superficial cervical fascia[WP]." [Wikipedia:Panniculus_adiposus] synonym: "panniculus adiposus group" EXACT [] synonym: "subcutaneous fat" RELATED [Wikipedia:Panniculus_adiposus] xref: Wikipedia:Panniculus_adiposus is_a: UBERON:0002190 ! subcutaneous adipose tissue property_value: editor_note "It includes structures that are considered fascia by some sources but not by others. Consider merging with subcutaneous adipose tissue" xsd:string [Term] id: UBERON:0013489 name: superficial cervical fascia def: "Superficial cervical fascia is a thin layer of subcutaneous connective tissue that lies between the dermis of the skin and the deep cervical fascia. It contains the platysma, cutaneous nerves, blood, and lymphatic vessels. It also contains a varying amount of fat, which is its distinguishing characteristic." [Wikipedia:Superficial_cervical_fascia] comment: It is considered by some to be a part of the Panniculus adiposus, and not true fascia[WP] synonym: "lamina superficialis fasciae cervicalis" EXACT OMO:0003011 [FMA:57805, FMA:TA] synonym: "superficial cervical fascia" EXACT [FMA:57805] synonym: "superficial layer of cervical fascia" EXACT [FMA:57805] synonym: "superficial layer of deep cervical fascia" EXACT [FMA:57805] xref: FMA:57805 xref: SCTID:175208005 xref: Wikipedia:Superficial_cervical_fascia is_a: UBERON:0013491 ! cervical fascia relationship: part_of UBERON:0013488 {notes="contested", source="Wikipedia"} ! panniculus adiposus [Term] id: UBERON:0013490 name: deep cervical fascia def: "The deep cervical fascia (or fascia colli in older texts) lies under cover of the Platysma, and invests the neck; it also forms sheaths for the carotid vessels, and for the structures situated in front of the vertebral column. Its attachment to the hyoid bone prevents the formation of a dewlap. The investing portion of the fascia is attached behind to the ligamentum nucha and to the spinous process of the seventh cervical vertebra. The 'alar fascia' is a portion of deep cervical fascia." [Wikipedia:Deep_cervical_fascia] synonym: "deep cervical fascia" EXACT [FMA:21791] synonym: "deep fascia of neck" EXACT [FMA:21791] synonym: "fascia coli" RELATED [Wikipedia:Deep_cervical_fascia] synonym: "fascia colli" RELATED [Wikipedia:Deep_cervical_fascia] synonym: "investing cervical fascia" EXACT [FMA:21791] synonym: "investing layer of cervical fascia" EXACT [FMA:21791] xref: FMA:21791 xref: Wikipedia:Deep_cervical_fascia is_a: UBERON:0013491 ! cervical fascia [Term] id: UBERON:0013491 name: cervical fascia def: "Any fascia tissue that is part of the neck region." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cervical_fascia] synonym: "fascia of neck" EXACT [] xref: FMA:76866 xref: SCTID:361906006 xref: Wikipedia:Cervical_fascia is_a: UBERON:0003568 ! neck connective tissue is_a: UBERON:0008982 ! fascia [Term] id: UBERON:0013492 name: prevertebral cervical fascia def: "The prevertebral fascia (or prevertebral layer of cervical fascia) is a fascia in the neck." [Wikipedia:Prevertebral_fascia] synonym: "lamina prevertebralis (fascia cervicalis)" EXACT [FMA:46560] synonym: "lamina prevertebralis fasciae cervicalis" EXACT OMO:0003011 [FMA:46560, FMA:TA] synonym: "prevertebral fascia" EXACT [FMA:46560] synonym: "prevertebral layer" RELATED [Wikipedia:Prevertebral_fascia] synonym: "prevertebral layer of cervical fascia" EXACT [FMA:46560] synonym: "prevertebral layer of cervical fascia" RELATED [Wikipedia:Prevertebral_fascia] synonym: "prevertebral layer of deep cervical fascia" EXACT [FMA:46560] xref: FMA:46560 xref: SCTID:175407002 xref: Wikipedia:Prevertebral_fascia is_a: UBERON:0013491 ! cervical fascia [Term] id: UBERON:0013493 name: abdominal fascia def: "A fascia that is part of a abdomen." [OBOL:automatic] synonym: "endo-abdominopelvic fascia" EXACT [FMA:19841] synonym: "fascia of abdomen" EXACT [FMA:19841] xref: FMA:19841 xref: SCTID:306708007 xref: Wikipedia:Abdominal_fascia is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0008982 ! fascia [Term] id: UBERON:0013494 name: keratin-coated spine def: "A modified strand of hair covered in a keratin coat, as found in porcupines and hedgehogs." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001037 ! strand of hair is_a: UBERON:0008260 ! spine appendage [Term] id: UBERON:0013495 name: barbed keratin-coated spine def: "A keratin-coated spine that is tipped with a barb." [https://orcid.org/0000-0002-6601-2165] synonym: "porcupine quill" RELATED [] synonym: "quill" EXACT [] is_a: UBERON:0013494 ! keratin-coated spine relationship: present_in_taxon NCBITaxon:10135 relationship: present_in_taxon NCBITaxon:30649 property_value: taxon_notes "Porcupines' quills, or spines, take on various forms, depending on the species, but all are modified hairs coated with thick plates of keratin, and they are embedded in the skin musculature. Old World porcupines (Hystricidae) have quills embedded in clusters, whereas in New World porcupines (Erethizontidae), single quills are interspersed with bristles, underfur and hair." xsd:string [Term] id: UBERON:0013496 name: unbarbed keratin-coated spine def: "A keratin-coated spine that is lacks a barbed end." [https://orcid.org/0000-0002-6601-2165] synonym: "hedgehog spine" EXACT [] synonym: "spine" BROAD [] is_a: UBERON:0013494 ! keratin-coated spine relationship: present_in_taxon NCBITaxon:9363 [Term] id: UBERON:0013497 name: muscularis orbicularis def: "A fringe of muscle running along the periphery of the panniculus." [https://orcid.org/0000-0002-6601-2165] synonym: "orbicularis" RELATED [] synonym: "orbicularis muscle" EXACT [] is_a: UBERON:0002036 ! striated muscle tissue relationship: part_of UBERON:0002416 ! integumental system relationship: present_in_taxon NCBITaxon:9363 property_value: function_notes "Hedgehogs roll into a ball via contraction of this muscle" xsd:string [Term] id: UBERON:0013498 name: vestibulo-cochlear VIII ganglion complex synonym: "vestibular VIII ganglion complex" RELATED [EHDAA2:0004313] synonym: "vestibulocochlear ganglion complex" EXACT [] synonym: "vestibulocochlear VIII ganglion complex" EXACT [] xref: EHDAA2:0004313 xref: EMAPA:17570 is_a: UBERON:0001714 ! cranial ganglion property_value: editor_note "requires verification" xsd:string [Term] id: UBERON:0013499 name: glossopharyngeal-vagus IX-X preganglion complex synonym: "glossopharyngeal-vagus preganglion complex" RELATED [EMAPA:16662] xref: EMAPA:16662 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001714 {source="cjm"} ! cranial ganglion [Term] id: UBERON:0013500 name: glossopharyngeal-vagus IX-X ganglion complex synonym: "glossopharyngeal-vagus ganglion complex" RELATED [EMAPA:16796] xref: EMAPA:16796 is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion relationship: develops_from UBERON:0013499 ! glossopharyngeal-vagus IX-X preganglion complex [Term] id: UBERON:0013501 name: cloacal sphincter def: "A sphincter muscle that is part of a cloaca." [OBOL:automatic] comment: the muscles of the cloacal sphincter specialise into the perineal muscles in mammals (Gegenbaur, 1883; Popowsky, 1899; Nishi, 1938). synonym: "sphincter cloacae" EXACT OMO:0003004 [] xref: NCIT:C34129 xref: UMLS:C1516658 {source="ncithesaurus:Cloacal_Sphincter"} is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0014783 ! cloacal muscle [Term] id: UBERON:0013502 name: 5th arch mesenchyme def: "A mesenchyme that is part of a pharyngeal arch 5." [OBOL:automatic] synonym: "5th branchial arch mesenchyme" RELATED [] synonym: "5th pharyngeal arch mesenchyme" EXACT [VHOG:0001052] synonym: "pharyngeal arch 5 mesenchyme" RELATED [] is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region relationship: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: UBERON:0013503 name: caudal vertebra cartilage element alt_id: UBERON:0013517 def: "A caudal vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "coccygeal vertebra cartilage element" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] synonym: "tail vertebral cartilage condensation" EXACT [EMAPA:18044] xref: EHDAA2:0000260 xref: EMAPA:18044 is_a: UBERON:0011094 ! vertebra cartilage element is_a: UBERON:0018142 ! caudal vertebra endochondral element is_a: UBERON:2001457 ! postcranial axial cartilage relationship: develops_from UBERON:0013504 ! caudal vertebra pre-cartilage condensation [Term] id: UBERON:0013504 name: caudal vertebra pre-cartilage condensation alt_id: UBERON:0013518 def: "A caudal vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "coccygeal vertebra pre-cartilage condensation" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "tail vertebral pre-cartilage condensation" EXACT [EMAPA:18045] xref: EMAPA:18045 is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0018142 ! caudal vertebra endochondral element [Term] id: UBERON:0013505 name: cervical vertebra cartilage element def: "A cervical vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] xref: EHDAA2:0000240 is_a: UBERON:0003601 ! neck cartilage is_a: UBERON:0011094 ! vertebra cartilage element is_a: UBERON:0015007 ! cervical vertebra endochondral element is_a: UBERON:2001457 ! postcranial axial cartilage relationship: develops_from UBERON:0013506 ! cervical vertebra pre-cartilage condensation [Term] id: UBERON:0013506 name: cervical vertebra pre-cartilage condensation def: "A cervical vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0015007 ! cervical vertebra endochondral element [Term] id: UBERON:0013507 name: thoracic vertebra cartilage element def: "A thoracic vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] xref: EHDAA2:0002014 is_a: UBERON:0011094 ! vertebra cartilage element is_a: UBERON:0015008 ! thoracic vertebra endochondral element is_a: UBERON:2001457 ! postcranial axial cartilage relationship: develops_from UBERON:0013508 ! thoracic vertebra pre-cartilage condensation [Term] id: UBERON:0013508 name: thoracic vertebra pre-cartilage condensation def: "A thoracic vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0015008 ! thoracic vertebra endochondral element [Term] id: UBERON:0013509 name: lumbar vertebra cartilage element def: "A lumbar vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] xref: EHDAA2:0001038 is_a: UBERON:0011094 ! vertebra cartilage element is_a: UBERON:0015009 ! lumbar vertebra endochondral element is_a: UBERON:2001457 ! postcranial axial cartilage relationship: develops_from UBERON:0013510 ! lumbar vertebra pre-cartilage condensation [Term] id: UBERON:0013510 name: lumbar vertebra pre-cartilage condensation def: "A lumbar vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0015009 ! lumbar vertebra endochondral element [Term] id: UBERON:0013511 name: ambiens muscle def: "A long muscle found in reptiles that originates on the ilium and crosses the acetabulum and the knee joint before being inserted on the tibia." [ISBN:0073040584] synonym: "ambiens" RELATED [] is_a: UBERON:0003663 ! hindlimb muscle relationship: never_in_taxon NCBITaxon:40674 property_value: external_definition "The tendon of the ambiens muscle passes obliquely over the knee joint. It assists in the control of the bird's toes. This muscle is present in some reptiles but not mammals. It is present in caiques and some other South American genera, but missing in most parrot genera. This was first noted by Garrod (1874) who proposed using this and other anatomical differences to classify parrots. For oproperty_value external_definitionanatomical differences among parrots see carotid arteries, furcula, and uropygial gland" xsd:string {source="http://caiquesite.com/glossary.htm"} [Term] id: UBERON:0013512 name: row of feathers synonym: "feather row" EXACT [] synonym: "feather tract" EXACT [] is_a: UBERON:0011810 ! collection of feathers is_a: UBERON:0034926 ! anatomical row [Term] id: UBERON:0013513 name: anal pterya def: "One of two rows of feathers encircling the cloaca." [http://caiquesite.com/glossary.htm] synonym: "anal pteryla" RELATED [] synonym: "cloacal circlet" RELATED [http://caiquesite.com/glossary.htm] synonym: "undertail covert" RELATED [] is_a: UBERON:0013512 ! row of feathers [Term] id: UBERON:0013514 name: space surrounding organism def: "The space that surrounds an organism." [https://orcid.org/0000-0002-6601-2165] synonym: "external to organism" EXACT [] synonym: "outside of body" EXACT [] is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0013515 name: subdivision of oviduct def: "A section through the tube or network of tubes that connects the ovaries to the outside of the body." [http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "subdivision of fallopian tube" NARROW [FMA:18302] synonym: "subdivision of oviduct" EXACT [FMA:18302] synonym: "subdivision of uterine tube" EXACT [] synonym: "uterine tube zone" EXACT [FMA:18302] synonym: "zone of uterine tube" EXACT [FMA:18302] xref: FMA:18302 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000993 ! oviduct property_value: external_ontology_notes "FMA class may only represent the uterine portion" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0013516 name: uterine tube magnum def: "The second segment of the oviduct. This is where most of the egg white is added to the egg as it moves down the duct." [http://caiquesite.com/glossary.htm] synonym: "magnum" BROAD [] synonym: "magnum of oviduct" EXACT [] synonym: "magnum of uterine tube" EXACT [] is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct [Term] id: UBERON:0013519 name: avian uterine tube isthmus def: "The third segment of the oviduct. At this point in the egg's journey down the oviduct, the membranes form and calcification starts." [http://caiquesite.com/glossary.htm] synonym: "isthmus of oviduct" EXACT [] synonym: "isthmus of uterine tube" EXACT [] xref: Wikipedia:Isthmus_of_uterine_tube is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct [Term] id: UBERON:0013522 name: subdivision of tube is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000025 ! tube [Term] id: UBERON:0013523 name: lateral vaginal canal def: "One of two lateral tracts connecting a uterus to a common median tract separated from the median vagina via ureters which prevent their fusion. Found in marsupials." [https://orcid.org/0000-0002-6601-2165] synonym: "lateral vagina" EXACT [] synonym: "lateral vaginae" EXACT OMO:0003004 [] is_a: UBERON:0000996 ! vagina is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013524 name: median vaginal canal def: "A median canal in the reproductive system of marsupials that connects the uteri to a common tract, joining with the two lateral vaginas. Connects the uterine openings directly with the urogenital sinus." [https://orcid.org/0000-0002-6601-2165] synonym: "central pseudovaginal canal" EXACT [] synonym: "central vagina" EXACT [] synonym: "median pseudovaginal canal" EXACT [] synonym: "median vagina" EXACT [] synonym: "midline birth canal" RELATED [] is_a: UBERON:0000996 ! vagina is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0013525 name: stomach lumen def: "The anatomical space that is enclosed by a stomach." [http://orcid.org/0000-0002-6601-2165] synonym: "cavity of stomach" EXACT [FMA:14585] synonym: "gastric cavity" RELATED [FMA:14585] xref: EMAPA:18395 xref: FMA:14585 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0011565 {source="FMA"} ! lumen of gastrointestinal system property_value: external_definition "Organ cavity which is bound by the internal surface of the wall of stomach. Examples: There is only one cavity of stomach[FMA:14585]." xsd:string {source="FMA:14585"} [Term] id: UBERON:0013526 name: otocyst lumen def: "An anatomical cavity that is part of a ear vesicle." [OBOL:automatic] synonym: "lumen of otocyst" EXACT [EMAPA:25363] xref: EHDAA2:0004121 xref: EMAPA:25363 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0007473 {source="EHDAA2"} ! lumen of epithelial sac relationship: develops_from UBERON:0006273 {source="EHDAA2"} ! otic pit relationship: part_of UBERON:0003051 {source="EHDAA2"} ! ear vesicle [Term] id: UBERON:0013527 name: pectoral flipper tubercle def: "A bump or swelling adorining the head and leading edge of a pectoral flipper, associated with the multiple joints and terminal phalanges as found in the multiple phalanges of the humpback whale." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0002102 ! forelimb property_value: taxon_notes "In a humpback the number of tubercles ranges from 9 to 11, with the first at the joint between the radius and metacarpal of digit II (with digit I absent)" xsd:string [Term] id: UBERON:0013528 name: Brodmann (1909) area 11 def: "Brodmann area 11 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning, reasoning, and decision making." [Wikipedia:Brodmann_area_11] synonym: "area 11 of Brodmann" EXACT [FMA:68608] synonym: "area 11 of Brodmann" RELATED [Wikipedia:Brodmann_area_11] synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] synonym: "area 11 of Brodmann-1909" EXACT [BIRNLEX:1742] synonym: "area orbitalis interna" RELATED OMO:0003011 [NeuroNames:1036] synonym: "area praefrontalis" BROAD [BIRNLEX:1742] synonym: "B09-11" BROAD OMO:0003000 [BIRNLEX:1742, NIFSTD:SumsDB_abbrevSource] synonym: "B09-11" EXACT [BIRNLEX:1742] synonym: "BA11" RELATED [FMA:68608] synonym: "Brodmann (1909) area 11" EXACT [BIRNLEX:1742] synonym: "Brodmann area 11, prefrontal" EXACT [BIRNLEX:1742] synonym: "brodmann's area 11" RELATED [NeuroNames:1036] synonym: "medial orbital area" EXACT [FMA:68608] synonym: "prefrontal area 11" RELATED [Wikipedia:Brodmann_area_11] xref: BIRNLEX:1742 xref: FMA:68608 xref: neuronames:1036 {source="BIRNLEX:1742"} xref: UMLS:C1272533 {source="BIRNLEX:1742"} xref: Wikipedia:Brodmann_area_11 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area [Term] id: UBERON:0013529 name: Brodmann area def: "A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames)." [BIRNLEX:1731] synonym: "Brodmann parcellation scheme region" RELATED [BIRNLEX:1731] synonym: "Brodmann partition scheme region" RELATED [BIRNLEX:1731] synonym: "Brodmann's areas" RELATED OMO:0003004 [BIRNLEX:1731] xref: BAMS:VTM xref: BIRNLEX:1731 xref: FMA:68596 xref: NCIT:C94868 xref: neuronames:1032 {source="tgbugs"} xref: SCTID:384717008 xref: Wikipedia:Brodmann_area xref: WikipediaCategory:Brodmann_areas is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="FMA", source="Wikipedia"} ! cerebral cortex [Term] id: UBERON:0013531 name: retrosplenial region def: "The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30." [Wikipedia:Retrosplenial_region] subset: pheno_slim synonym: "retrosplenial area" RELATED [BAMS:RSP] synonym: "retrosplenial cortex" RELATED [BTO:0003977, Wikipedia:Retrosplenial_region] xref: BAMS:RSP xref: BTO:0003977 xref: DHBA:10324 xref: DHBA:266441669 xref: DMBA:16093 xref: MBA:254 xref: neuronames:2436 xref: Wikipedia:Retrosplenial_region is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex [Term] id: UBERON:0013533 name: Brodmann (1909) area 2 synonym: "area 2 of Brodmann" EXACT [FMA:68598] synonym: "area 2 of Brodmann (guenon)" RELATED [NeuroNames:1033] synonym: "area 2 of Brodmann-1909" EXACT [BIRNLEX:1733] synonym: "area postcentralis caudalis" EXACT [BIRNLEX:1733] synonym: "B09-2" BROAD OMO:0003000 [BIRNLEX:1733, NIFSTD:SumsDB_abbrevSource] synonym: "B09-2" EXACT [BIRNLEX:1733] synonym: "BA2" RELATED [FMA:68598] synonym: "Brodmann (1909) area 2" EXACT [BIRNLEX:1733] synonym: "Brodmann area 2" EXACT [FMA:68598] synonym: "Brodmann area 2, caudal postcentral" EXACT [BIRNLEX:1733] synonym: "Brodmann's area 2" EXACT [FMA:68598] synonym: "caudal postcentral area" EXACT [FMA:68598] synonym: "postcentral gyrus" RELATED [Wikipedia:Brodmann_area_2] xref: BIRNLEX:1733 xref: FMA:68598 xref: neuronames:1033 {source="BIRNLEX:1733"} xref: UMLS:C1272524 {source="BIRNLEX:1733"} xref: Wikipedia:Brodmann_area_2 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013535 name: Brodmann (1909) area 4 def: "The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter." [BIRNLEX:1735] synonym: "area 4 of Brodmann" EXACT [FMA:68600] synonym: "area 4 of Brodmann (guenon)" RELATED [NeuroNames:1014] synonym: "area 4 of Brodmann-1909" EXACT [BIRNLEX:1735] synonym: "area gigantopyramidalis" EXACT [BIRNLEX:1735] synonym: "B09-4" BROAD OMO:0003000 [BIRNLEX:1735, NIFSTD:SumsDB_abbrevSource] synonym: "B09-4" EXACT [BIRNLEX:1735] synonym: "BA4" RELATED [FMA:68600] synonym: "Brodmann (1909) area 4" EXACT [BIRNLEX:1735] synonym: "Brodmann area 4" EXACT [FMA:68600] synonym: "Brodmann area 4, gigantopyramidal" EXACT [BIRNLEX:1735] synonym: "Brodmann's area 4" EXACT [FMA:68600] synonym: "giant pyramidal area" EXACT [FMA:68600] xref: BIRNLEX:1735 xref: FMA:68600 xref: neuronames:1014 {source="BIRNLEX:1735"} xref: UMLS:C1272526 {source="BIRNLEX:1735"} xref: Wikipedia:Brodmann_area_4 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0001384 {seeAlso="https://github.com/obophenotype/uberon/issues/515"} ! primary motor cortex property_value: seeAlso "https://github.com/obophenotype/uberon/issues/515" xsd:anyURI [Term] id: UBERON:0013538 name: Brodmann (1909) area 7 def: "Brodmann area 7 is one of Brodmann's cytologically defined regions of the brain. It is involved in locating objects in space. It serves as a point of convergence between vision and proprioception to determine where objects are in relation to parts of the body." [Wikipedia:Brodmann_area_7] synonym: "area 7 of Brodmann" EXACT [FMA:68604] synonym: "area 7 of Brodmann-1909" EXACT [BIRNLEX:1738] synonym: "area parietalis superior" EXACT OMO:0003011 [BIRNLEX:1738, Wikipedia:Brodmann_area_7] synonym: "B09-7" BROAD OMO:0003000 [BIRNLEX:1738, NIFSTD:SumsDB_abbrevSource] synonym: "B09-7" EXACT [BIRNLEX:1738] synonym: "BA7" RELATED [FMA:68604] synonym: "Brodmann (1909) area 7" EXACT [BIRNLEX:1738] synonym: "Brodmann area 7" EXACT [FMA:68604] synonym: "Brodmann area 7, superior parietal" EXACT [BIRNLEX:1738] synonym: "gyrus F3" RELATED OMO:0003011 [NeuroNames:85] synonym: "gyrus frontalis tertius" RELATED OMO:0003011 [NeuroNames:85] synonym: "regio subfrontalis" RELATED OMO:0003011 [NeuroNames:85] xref: BIRNLEX:1738 xref: FMA:68604 xref: neuronames:85 {source="BIRNLEX:1738"} xref: UMLS:C1272529 {source="BIRNLEX:1738"} xref: Wikipedia:Brodmann_area_7 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013539 name: Brodmann (1909) area 8 def: "Brodmann area 8 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning complex movements." [Wikipedia:Brodmann_area_8] synonym: "area 8 of Brodmann" EXACT [FMA:68605] synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8 of Brodmann-1909" EXACT [BIRNLEX:1739] synonym: "area frontalis intermedia" EXACT OMO:0003011 [BIRNLEX:1739, Wikipedia:Brodmann_area_8] synonym: "B09-8" BROAD OMO:0003000 [BIRNLEX:1739, NIFSTD:SumsDB_abbrevSource] synonym: "B09-8" EXACT [BIRNLEX:1739] synonym: "BA8" RELATED [FMA:68605] synonym: "Brodmann (1909) area 8" EXACT [BIRNLEX:1739] synonym: "Brodmann area 8" EXACT [FMA:68605] synonym: "Brodmann area 8, intermediate frontal" EXACT [BIRNLEX:1739] synonym: "brodmann's area 8" RELATED [NeuroNames:1034] synonym: "intermediate frontal area" EXACT [FMA:68605] xref: BIRNLEX:1739 xref: FMA:68605 xref: neuronames:1034 {source="BIRNLEX:1739"} xref: UMLS:C1272530 {source="BIRNLEX:1739"} xref: Wikipedia:Brodmann_area_8 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013540 name: Brodmann (1909) area 9 def: "Brodmann area 9, or BA9, refers to a cytoarchitecturally defined portion of the frontal cortex in the brain of humans and other primates. It contributes to the dorsolateral and medial prefrontal cortex and plays a role in executive functions such as working memory, planning, inhibition, decision-making, and reasoning. Its cytoarchitecture is referred to as granular due to the concentration of granule cells in layer IV. Its internal pyramidal layer (V) is divisible into two sublayers, an outer layer 5a of densely distributed medium-size ganglion cells that partially merges with layer IV, and an inner, clearer, cell-poor layer 5b; the pyramidal cells of sublayer 3b of the external pyramidal layer (III) are smaller and sparser in distribution; the external granular layer (II) is narrow, with small numbers of sparsely distributed granule cells." [https://orcid.org/0000-0002-4964-5083, Wikipedia:Brodmann_area_9] synonym: "area 9 of Brodmann" EXACT [FMA:68606] synonym: "area 9 of Brodmann (guenon)" RELATED [NeuroNames:1024] synonym: "area 9 of Brodmann-1909" EXACT [BIRNLEX:1740] synonym: "area frontalis granularis" EXACT OMO:0003011 [BIRNLEX:1740, Wikipedia:Brodmann_area_9] synonym: "B09-9" BROAD OMO:0003000 [BIRNLEX:1740, NIFSTD:SumsDB_abbrevSource] synonym: "B09-9" EXACT [BIRNLEX:1740] synonym: "BA9" RELATED [FMA:68606] synonym: "Brodmann (1909) area 9" EXACT [BIRNLEX:1740] synonym: "Brodmann area 9" EXACT [FMA:68606] synonym: "Brodmann area 9, granular frontal" EXACT [BIRNLEX:1740] synonym: "brodmann's area 9" RELATED [NeuroNames:1024] synonym: "granular frontal area" EXACT [FMA:68606] xref: BIRNLEX:1740 xref: FMA:68606 xref: neuronames:1024 {source="BIRNLEX:1740"} xref: UMLS:C1272531 {source="BIRNLEX:1740"} xref: Wikipedia:Brodmann_area_9 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0009834 {source="https://orcid.org/0000-0003-3308-6245"} ! dorsolateral prefrontal cortex [Term] id: UBERON:0013541 name: Brodmann (1909) area 10 def: "Brodmann area 10, or BA10, is part of the frontal cortex in the human brain. BA10 encompasses the most anterior part of the frontal cortex, known as the frontopolar region. This area is believed to play a part in strategic processes involved in memory retrieval and executive function. This area is also called frontopolar area 10, and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. It occupies the most rostral portions of the superior frontal gyrus and the middle frontal gyrus. In humans, on the medial aspect of the hemisphere it is bounded ventrally by the superior rostral sulcus (H). It does not extend as far as the cingulate sulcus. Cytoarchitecturally it is bounded dorsally by the granular frontal area 9, caudally by the middle frontal area 46, and ventrally by the orbital area 47 and by the rostral area 12 or, in an early version of Brodmann's cortical map (Brodmann-1909), the prefrontal Brodmann area 11-1909." [Wikipedia:Brodmann_area_10] synonym: "area 10 of Brodmann" EXACT [FMA:68607] synonym: "area 10 of Brodmann-1909" EXACT [BIRNLEX:1741] synonym: "area frontopolaris" EXACT [BIRNLEX:1741] synonym: "B09-10" BROAD OMO:0003000 [BIRNLEX:1741, NIFSTD:SumsDB_abbrevSource] synonym: "B09-10" EXACT [BIRNLEX:1741] synonym: "BA10" RELATED [FMA:68607] synonym: "Brodmann (1909) area 10" EXACT [BIRNLEX:1741] synonym: "Brodmann area 10" EXACT [FMA:68607] synonym: "Brodmann area 10, frontoplar" EXACT [BIRNLEX:1741] synonym: "lateral orbital area" EXACT [FMA:68607] synonym: "rostral sulcus" RELATED [NeuroNames:76] synonym: "sulcus rectus" RELATED OMO:0003011 [NeuroNames:76] synonym: "sulcus rectus (Krieg)" RELATED OMO:0003011 [NeuroNames:76] xref: BAMS:ros xref: BIRNLEX:1741 xref: DHBA:146034836 xref: FMA:68607 xref: neuronames:76 {source="BIRNLEX:1741"} xref: UMLS:C1272532 {source="BIRNLEX:1741"} xref: Wikipedia:Brodmann_area_10 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0000451 ! prefrontal cortex [Term] id: UBERON:0013543 name: Brodmann (1909) area 12 alt_id: UBERON:0013530 def: "Brodmann area 12 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It occupies the most rostral portion of the frontal lobe. Brodmann-1909 did not regard it as homologous, either topographically or cytoarchitecturally, to rostral area 12 of the human. Distinctive features (Brodmann-1905): a quite distinct internal granular layer (IV) separates slender pyramidal cells of the external pyramidal layer (III) and the internal pyramidal layer (V); the multiform layer (VI) is expanded, contains widely dispersed spindle cells and merges gradually with the underlying cortical white matter; all cells, including the pyramidal cells of the external and internal pyramidal layers are inordinately small; the internal pyramidal layer (V) also contains spindle cells in groups of two to five located close to its border with the internal granular layer (IV)." [Wikipedia:Brodmann_area_12] synonym: "area 12 of Brodmann" EXACT [FMA:68609] synonym: "area 12 of Brodmann-1909" EXACT [BIRNLEX:1743] synonym: "area praefrontalis" BROAD [BIRNLEX:1743] synonym: "area praefrontalis" EXACT [BIRNLEX:1743] synonym: "B09-12" BROAD OMO:0003000 [BIRNLEX:1743, NIFSTD:SumsDB_abbrevSource] synonym: "B09-12" EXACT [BIRNLEX:1743] synonym: "BA12" RELATED [FMA:68609] synonym: "Brodmann (1909) area 12" EXACT [BIRNLEX:1743] synonym: "Brodmann area 12" EXACT [FMA:68609] synonym: "Brodmann area 12, prefrontal" EXACT [BIRNLEX:1743] synonym: "frontopolar area" EXACT [FMA:68609] synonym: "sulcus fronto-orbitalis" RELATED OMO:0003011 [NeuroNames:77] xref: BIRNLEX:1743 xref: FMA:68609 xref: neuronames:77 {source="BIRNLEX:1743"} xref: UMLS:C1272534 {source="BIRNLEX:1743"} xref: Wikipedia:Brodmann_area_12 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013544 name: Brodmann (1909) area 13 def: "Brodmann area 13 is a subdivision of the cerebral cortex as defined on the guenon monkey and on the basis of cytoarchitecture. Brodmann area 13 is found in humans, however it seems to act as a bridge between the lateral and medial layers of the brain. Thus it is sometimes misidentified as not being a Brodmann area." [Wikipedia:Brodmann_area_13] synonym: "area 13 of Brodmann" RELATED [FMA:68610] synonym: "area 13 of Brodmann-1909" EXACT [BIRNLEX:1744] synonym: "B09-13" BROAD OMO:0003000 [BIRNLEX:1744, NIFSTD:SumsDB_abbrevSource] synonym: "B09-13" EXACT [BIRNLEX:1744] synonym: "BA13" RELATED [FMA:68610] synonym: "Brodmann (1909) area 13" EXACT [BIRNLEX:1744] synonym: "Brodmann area 13" EXACT [FMA:68610] xref: BIRNLEX:1744 xref: FMA:68610 xref: neuronames:1009 xref: OldNeuroNames:379923166 {source="BIRNLEX:1744"} xref: Wikipedia:Brodmann_area_13 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013545 name: Brodmann (1909) area 14 def: "Brodmann Area 14 is one of Brodmann's subdivisions of the cerebral cortex in the brain. It was defined by Brodmann in the guenon monkey. No equivalent structure exists in humans." [Wikipedia:Brodmann_area_14] synonym: "area 14 of Brodmann" RELATED [FMA:68611] synonym: "area 14 of Brodmann-1909" EXACT [BIRNLEX:1745] synonym: "B09-14" BROAD OMO:0003000 [BIRNLEX:1745, NIFSTD:SumsDB_abbrevSource] synonym: "B09-14" EXACT [BIRNLEX:1745] synonym: "BA14" RELATED [FMA:68611] synonym: "Brodmann (1909) area 14" EXACT [BIRNLEX:1745] synonym: "Brodmann area 14" EXACT [FMA:68611] xref: BIRNLEX:1745 xref: FMA:68611 xref: neuronames:1008 xref: OldNeuroNames:2049637081 {source="BIRNLEX:1745"} xref: Wikipedia:Brodmann_area_14 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0000451 {notes="vmPFC", source="WP"} ! prefrontal cortex [Term] id: UBERON:0013546 name: Brodmann (1909) area 15 def: "Brodmann Area 15 is one of Brodmann's subdivisions of the cerebral cortex in the brain. Area 15 was defined by Brodmann in the guenon monkey, but he found no equivalent structure in humans. However, functional imaging experiments have found structures that may be homologous." [Wikipedia:Brodmann_area_15] synonym: "area 15 of Brodmann" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann (guenon)" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann-1909" EXACT [BIRNLEX:1746] synonym: "B09-15" BROAD OMO:0003000 [BIRNLEX:1746, NIFSTD:SumsDB_abbrevSource] synonym: "B09-15" EXACT [BIRNLEX:1746] synonym: "BA15" RELATED [FMA:68612] synonym: "Brodmann (1909) area 15" EXACT [BIRNLEX:1746] synonym: "Brodmann area 15" EXACT [FMA:68612] synonym: "brodmann's area 15" RELATED [NeuroNames:1010] synonym: "insula ventralis" RELATED OMO:0003011 [NeuroNames:1010] xref: BIRNLEX:1746 xref: FMA:68612 xref: neuronames:1010 {source="BIRNLEX:1746"} xref: Wikipedia:Brodmann_area_15 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013547 name: Brodmann (1909) area 16 def: "Brodmann area 16 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It is a relatively undifferentiated cortical area that Brodmann regarded as part of the insula because of the relation of its innermost multiform layer (VI) with the claustrum (VICl). The laminar organization of cortex is almost totally lacking. The molecular layer (I) is wide as in area 15 of Brodmann-1905. The space between layer I and layer VI is composed of a mixture of pyramidal cells and spindle cells with no significant number of granule cells. Pyramidal cells clump in the outer part to form glomeruli similar to those seen in some of the primary olfactory areas (Brodmann-1905). This term also refers to an area known as peripaleocortical claustral - a cytoarchitecturally defined (agranular) portion of the insula at its rostral extreme where it approaches most closely the claustrum and the prepyriform area (Stephan-76)." [Wikipedia:Brodmann_area_16] synonym: "area 16 of Brodmann" EXACT [FMA:68613] synonym: "area 16 of Brodmann (guenon)" RELATED [NeuroNames:1011] synonym: "area 16 of Brodmann-1909" EXACT [BIRNLEX:1747] synonym: "B09-16" BROAD OMO:0003000 [BIRNLEX:1747, NIFSTD:SumsDB_abbrevSource] synonym: "B09-16" EXACT [BIRNLEX:1747] synonym: "BA16" RELATED [FMA:68613] synonym: "Brodmann (1909) area 16" EXACT [BIRNLEX:1747] synonym: "Brodmann area 16" EXACT [FMA:68613] synonym: "brodmann's area 16" RELATED [NeuroNames:1011] synonym: "insula olfactoria" RELATED OMO:0003011 [NeuroNames:1011] xref: BIRNLEX:1747 xref: FMA:68613 xref: neuronames:1011 {source="BIRNLEX:1747"} xref: Wikipedia:Brodmann_area_16 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013550 name: Brodmann (1909) area 19 def: "Brodmann area 19, or BA19, is part of the occipital lobe cortex in the human brain. Along with area 18, it comprises the extrastriate (or peristriate) cortex. In normally-sighted humans, extrastriate cortex is a visual association area, with feature-extracting, shape recognition, attentional, and multimodal integrating functions. This area is also known as peristriate area 19, and it refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the lingual gyrus, the cuneus, the lateral occipital gyrus (H) and the superior occipital gyrus (H) of the occipital lobe where it is bounded approximately by the parieto-occipital sulcus. Cytoarchitecturally it is bounded on one side by the parastriate area 18 which it surrounds. Rostrally it is bounded by the angular area 39 (H) and the occipitotemporal area 37 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_19] synonym: "area 19 of Brodmann" EXACT [FMA:68616] synonym: "area 19 of Brodmann (guenon)" RELATED [NeuroNames:1028] synonym: "area 19 of Brodmann-1909" EXACT [BIRNLEX:1750] synonym: "area peristriata" EXACT [BIRNLEX:1750] synonym: "area praeoccipitalis" RELATED OMO:0003011 [NeuroNames:1028] synonym: "B09-19" BROAD OMO:0003000 [BIRNLEX:1750, NIFSTD:SumsDB_abbrevSource] synonym: "B09-19" EXACT [BIRNLEX:1750] synonym: "BA19" RELATED [FMA:68616] synonym: "Brodmann (1909) area 19" EXACT [BIRNLEX:1750] synonym: "Brodmann area 19" EXACT [FMA:68616] synonym: "Brodmann area 19, peristriate" EXACT [BIRNLEX:1750] synonym: "Brodmann's area 19" EXACT [FMA:68616] synonym: "preoccipital area" EXACT [FMA:68616] xref: BIRNLEX:1750 xref: FMA:68616 xref: neuronames:1028 {source="BIRNLEX:1750"} xref: UMLS:C1272537 {source="BIRNLEX:1750"} xref: Wikipedia:Brodmann_area_19 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0014370 {source="WP"} ! extrastriate cortex [Term] id: UBERON:0013551 name: Brodmann (1909) area 20 def: "Brodmann area 20, or BA20, is part of the temporal cortex in the human brain. The region encompasses most of the ventral temporal cortex, a region believed to play a part in high-level visual processing and recognition memory. This area is also known as inferior temporal area 20, and it refers to a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the inferior temporal gyrus. Cytoarchitecturally it is bounded medially by the ectorhinal area 36 (H), laterally by the middle temporal area 21, rostrally by the temporopolar area 38 (H) and caudally by the occipitotemporal area 37 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_20] synonym: "area 20 of Brodmann" EXACT [FMA:68617] synonym: "area 20 of Brodmann (guenon)" RELATED [NeuroNames:1025] synonym: "area 20 of Brodmann-1909" EXACT [BIRNLEX:1751] synonym: "area temporalis inferior" EXACT [BIRNLEX:1751] synonym: "B09-20" BROAD OMO:0003000 [BIRNLEX:1751, NIFSTD:SumsDB_abbrevSource] synonym: "B09-20" EXACT [BIRNLEX:1751] synonym: "BA20" RELATED [FMA:68617] synonym: "Brodmann (1909) area 20" EXACT [BIRNLEX:1751] synonym: "Brodmann area 20" EXACT [FMA:68617] synonym: "Brodmann area 20, inferior temporal" EXACT [BIRNLEX:1751] synonym: "brodmann's area 20" RELATED [NeuroNames:1025] synonym: "inferior temporal area" EXACT [FMA:68617] xref: BIRNLEX:1751 xref: FMA:68617 xref: neuronames:1025 {source="BIRNLEX:1751"} xref: UMLS:C1272538 {source="BIRNLEX:1751"} xref: Wikipedia:Brodmann_area_20 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013552 name: Brodmann (1909) area 21 def: "Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]." [Wikipedia:Brodmann_area_21] synonym: "area 21 of Brodmann" EXACT [FMA:68618] synonym: "area 21 of Brodmann (guenon)" RELATED [NeuroNames:1016] synonym: "area 21 of Brodmann-1909" EXACT [BIRNLEX:1752] synonym: "area temporalis media" RELATED [BIRNLEX:1752] synonym: "B09-21" BROAD OMO:0003000 [BIRNLEX:1752, NIFSTD:SumsDB_abbrevSource] synonym: "B09-21" EXACT [BIRNLEX:1752] synonym: "BA21" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 21" EXACT [BIRNLEX:1752] synonym: "Brodmann area 21" EXACT [] synonym: "Brodmann area 21, middle temporal" EXACT [BIRNLEX:1752] synonym: "brodmann's area 21" RELATED [NeuroNames:1016] xref: BIRNLEX:1752 xref: FMA:68618 xref: neuronames:1016 {source="BIRNLEX:1752"} xref: UMLS:C1272539 {source="BIRNLEX:1752"} xref: Wikipedia:Brodmann_area_21 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0016538 ! temporal cortex [Term] id: UBERON:0013553 name: Brodmann (1909) area 22 def: "Brodmann area 22 is one of Brodmann's cytologically defined regions of the brain. It is involved in auditory processing." [Wikipedia:Brodmann_area_22] synonym: "area 22 of Brodmann" EXACT [FMA:68619] synonym: "area 22 of Brodmann (guenon)" RELATED [NeuroNames:1017] synonym: "area 22 of Brodmann-1909" EXACT [BIRNLEX:1753] synonym: "area temporalis superior" EXACT OMO:0003011 [BIRNLEX:1753, Wikipedia:Brodmann_area_22] synonym: "B09-22" BROAD OMO:0003000 [BIRNLEX:1753, NIFSTD:SumsDB_abbrevSource] synonym: "B09-22" EXACT [BIRNLEX:1753] synonym: "BA22" RELATED [FMA:68619] synonym: "Brodmann (1909) area 22" EXACT [BIRNLEX:1753] synonym: "Brodmann area 22" EXACT [FMA:68619] synonym: "Brodmann area 22, superior temporal" EXACT [BIRNLEX:1753] synonym: "brodmann's area 22" RELATED [NeuroNames:1017] synonym: "Superior temporal area" EXACT [FMA:68619] xref: BIRNLEX:1753 xref: FMA:68619 xref: neuronames:1017 {source="BIRNLEX:1753"} xref: UMLS:C1272540 {source="BIRNLEX:1753"} xref: Wikipedia:Brodmann_area_22 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013554 name: Brodmann (1909) area 23 def: "The term area 23 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. Brodmann regarded it as topographically and cytoarchitecturally homologous to the combined ventral posterior cingulate area 23 and dorsal posterior cingulate area 31 of the human (Brodmann-1909). Distinctive Features (Brodmann-1905): the cortex is relatively thin; smaller cells predominate; the cell density of the multiform layer (VI) is great, producing a distinct boundary with the subcortical white matter; the internal granular layer (IV) is rather well developed; the internal pyramidal layer (V) contains a dense population of round, medium-sized ganglion cells concentrated at the border with layer IV; layers V and VI are narrow with a distinct mutual boundary.nn* Definition Source NeuroNames." [BIRNLEX:1754] synonym: "area 23 of Brodmann" EXACT [FMA:68620] synonym: "area 23 of Brodmann (guenon)" RELATED [NeuroNames:1018] synonym: "area 23 of Brodmann-1909" EXACT [BIRNLEX:1754] synonym: "area cingularis posterior" RELATED OMO:0003011 [NeuroNames:1018] synonym: "area cingularis posterior ventralis" EXACT OMO:0003011 [BIRNLEX:1754, Wikipedia:Brodmann_area_23] synonym: "B09-23" BROAD OMO:0003000 [BIRNLEX:1754, NIFSTD:SumsDB_abbrevSource] synonym: "B09-23" EXACT [BIRNLEX:1754] synonym: "BA23" RELATED [FMA:68620] synonym: "Brodmann (1909) area 23" EXACT [BIRNLEX:1754] synonym: "Brodmann area 23" EXACT [FMA:68620] synonym: "Brodmann area 23, ventral posterior cingulate" EXACT [BIRNLEX:1754] synonym: "brodmann's area 23" RELATED [NeuroNames:1018] synonym: "granular cingulate area" EXACT [FMA:68620] synonym: "posterior cingulate area" EXACT [FMA:68620] synonym: "ventral posterior cingulate area" RELATED [] xref: BIRNLEX:1754 xref: FMA:68620 xref: neuronames:1018 {source="BIRNLEX:1754"} xref: UMLS:C1272541 {source="BIRNLEX:1754"} xref: Wikipedia:Brodmann_area_23 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013556 name: Brodmann (1909) area 25 def: "Brodmann area 25 (BA25) is an area in the cerebral cortex of the brain and delineated based on its cytoarchitectonic characteristics. It is also called the subgenual area or area subgenualis. It is the 25th 'Brodmann area' defined by Korbinian Brodmann (thus its name). BA25 is located in the cingulate region as a narrow band in the caudal portion of the subcallosal area adjacent to the paraterminal gyrus. The posterior parolfactory sulcus separates the paraterminal gyrus from BA25. Rostrally it is bound by the prefrontal area 11 of Brodmann." [Wikipedia:Brodmann_area_25] synonym: "area 25 of Brodmann" EXACT [FMA:68622] synonym: "area 25 of Brodmann (guenon)" RELATED [NeuroNames:1029] synonym: "area 25 of Brodmann-1909" EXACT [BIRNLEX:1756] synonym: "area subgenualis" EXACT [BIRNLEX:1756] synonym: "B09-25" BROAD OMO:0003000 [BIRNLEX:1756, NIFSTD:SumsDB_abbrevSource] synonym: "B09-25" EXACT [BIRNLEX:1756] synonym: "BA25" RELATED [FMA:68622] synonym: "Brodmann (1909) area 25" EXACT [BIRNLEX:1756] synonym: "Brodmann area 25" EXACT [FMA:68622] synonym: "Brodmann area 25, subgenual" EXACT [BIRNLEX:1756] synonym: "Brodmann's area 25" EXACT [FMA:68622] xref: BIRNLEX:1756 xref: FMA:68622 xref: neuronames:1029 {source="BIRNLEX:1756"} xref: UMLS:C1272543 {source="BIRNLEX:1756"} xref: Wikipedia:Brodmann_area_25 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013558 name: Brodmann (1909) area 27 def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [Wikipedia:Brodmann_area_27] synonym: "area 27" EXACT [FMA:68624] synonym: "area 27 of Brodmann" EXACT [] synonym: "area 27 of Brodmann (guenon)" RELATED [NeuroNames:1039] synonym: "area 27 of Brodmann-1909" EXACT [BIRNLEX:1758] synonym: "area praesubicularis" EXACT [BIRNLEX:1758] synonym: "B09-27" BROAD OMO:0003000 [BIRNLEX:1758, NIFSTD:SumsDB_abbrevSource] synonym: "B09-27" EXACT [BIRNLEX:1758] synonym: "BA27" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 27" EXACT [BIRNLEX:1758] synonym: "Brodmann area 26, presubicular" EXACT [BIRNLEX:1758] synonym: "Brodmann area 27" EXACT [FMA:68624] synonym: "brodmann's area 27" RELATED [NeuroNames:1039] synonym: "presubicular area" EXACT [FMA:68624] xref: BIRNLEX:1758 xref: FMA:68624 xref: neuronames:1039 {source="BIRNLEX:1758"} xref: UMLS:C0175194 {source="BIRNLEX:1758"} xref: Wikipedia:Brodmann_area_27 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0001953 {notes="consider merging many sources treat as synonymous"} ! presubiculum [Term] id: UBERON:0013559 name: Brodmann (1909) area 28 synonym: "area 28 of Brodmann" EXACT [] synonym: "area 28 of Brodmann (Crosby)" EXACT [] synonym: "area 28 of Brodmann (guenon)" RELATED [NeuroNames:1030] synonym: "area 28 of Brodmann-1909" EXACT [BIRNLEX:1759] synonym: "area entorhinalis" EXACT [BIRNLEX:1759] synonym: "area entorhinalis ventralis" EXACT OMO:0003011 [Wikipedia:Brodmann_area_28] synonym: "B09-28" BROAD OMO:0003000 [BIRNLEX:1759, NIFSTD:SumsDB_abbrevSource] synonym: "B09-28" EXACT [BIRNLEX:1759] synonym: "BA28" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 28" EXACT [BIRNLEX:1759] synonym: "Brodmann area 28" EXACT [FMA:68625] synonym: "Brodmann area 28, entorhinal" EXACT [BIRNLEX:1759] xref: BIRNLEX:1759 xref: FMA:68625 xref: neuronames:1030 {source="BIRNLEX:1759"} xref: UMLS:C0598377 {source="BIRNLEX:1759"} xref: Wikipedia:Brodmann_area_28 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0002895 {notes="consider merging many sources treat as synonymous"} ! secondary olfactory cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Brodmann_Cytoarchitectonics_28.png" xsd:anyURI [Term] id: UBERON:0013560 name: Brodmann (1909) area 32 def: "The Brodmann area 32, also known in the human brain as the dorsal anterior cingulate area 32, refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it forms an outer arc around the anterior cingulate gyrus. The cingulate sulcus defines approximately its inner boundary and the superior rostral sulcus (H) its ventral boundary; rostrally it extends almost to the margin of the frontal lobe. Cytoarchitecturally it is bounded internally by the ventral anterior cingulate area 24, externally by medial margins of the agranular frontal area 6, intermediate frontal area 8, granular frontal area 9, frontopolar area 10, and prefrontal area 11-1909. (Brodmann19-09). Dorsal region of anterior cingulate gyrus is associated with rational thought processes, most notably active during the Stroop task." [Wikipedia:Brodmann_area_32] synonym: "area 25 of Brodmann-1905" RELATED [NeuroNames:1021] synonym: "area 32 of Brodmann" EXACT [FMA:68629] synonym: "area 32 of Brodmann (guenon)" RELATED [NeuroNames:1021] synonym: "area 32 of Brodmann-1909" EXACT [BIRNLEX:1760] synonym: "area cingularis anterior dorsalis" EXACT OMO:0003011 [BIRNLEX:1760, Wikipedia:Brodmann_area_32] synonym: "area praelimbica" RELATED OMO:0003011 [NeuroNames:1021] synonym: "B09-32" BROAD OMO:0003000 [BIRNLEX:1760, NIFSTD:SumsDB_abbrevSource] synonym: "B09-32" EXACT [BIRNLEX:1760] synonym: "BA32" RELATED [FMA:68629] synonym: "Brodmann (1909) area 32" EXACT [BIRNLEX:1760] synonym: "Brodmann area 32" EXACT [FMA:68629] synonym: "Brodmann area 32, dorsal anterior cingulate" EXACT [BIRNLEX:1760] synonym: "brodmann's area 32" RELATED [NeuroNames:1021] synonym: "Prelimbic area" RELATED [FMA:68629] xref: BIRNLEX:1760 xref: EMAPA:36447 xref: FMA:68629 xref: neuronames:1021 {source="BIRNLEX:1760"} xref: UMLS:C1272493 {source="BIRNLEX:1760"} xref: Wikipedia:Brodmann_area_32 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013561 name: Brodmann (1909) area 43 def: "Brodmann area 43 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It was described (but not labeled) on the map of cortical areas in Brodmann-1909, and it was regarded as cytoarchitecturally homologous to area 30 of Mauss in 1908 in the guenon and subcentral area 43 of the human (Brodmann-1909). The Vogts found no distinctive architectonic area of the corresponding location in the guenon (Vogts-1919)." [Wikipedia:Brodmann_area_43] synonym: "area 43 of brodmann" EXACT [FMA:68640] synonym: "area 43 of Brodmann (guenon)" RELATED [NeuroNames:1013] synonym: "area 43 of Brodmann-1909" EXACT [BIRNLEX:1761] synonym: "area subcentralis" EXACT [BIRNLEX:1761] synonym: "B09-43" BROAD OMO:0003000 [BIRNLEX:1761, NIFSTD:SumsDB_abbrevSource] synonym: "B09-43" EXACT [BIRNLEX:1761] synonym: "BA43" RELATED [FMA:68640] synonym: "Brodmann (1909) area 43" EXACT [BIRNLEX:1761] synonym: "Brodmann area 43" EXACT [FMA:68640] synonym: "Brodmann area 43, subcentral" EXACT [BIRNLEX:1761] synonym: "brodmann's area 43" RELATED [NeuroNames:1013] xref: BIRNLEX:1761 xref: FMA:68640 xref: neuronames:1013 {source="BIRNLEX:1761"} xref: UMLS:C1272506 {source="BIRNLEX:1761"} xref: Wikipedia:Brodmann_area_43 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013562 name: Brodmann (1909) area 8a synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8a of Brodmann-1909" EXACT [BIRNLEX:1762] synonym: "B09-8a" BROAD OMO:0003000 [BIRNLEX:1762, NIFSTD:SumsDB_abbrevSource] synonym: "B09-8a" EXACT [BIRNLEX:1762] synonym: "Brodmann (1909) area 8a" EXACT [BIRNLEX:1762] synonym: "Brodmann area 8a" EXACT [] synonym: "brodmann's area 8" RELATED [NeuroNames:1034] xref: BIRNLEX:1762 xref: neuronames:1034 {source="BIRNLEX:1762"} is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013573 name: Brodmann (1909) area 40 def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [Wikipedia:Supramarginal_gyrus] synonym: "area 40 of Brodmann" EXACT [FMA:68637] synonym: "area 40 of Brodmann-1909" EXACT [BIRNLEX:1773] synonym: "area supramarginalis" EXACT [BIRNLEX:1773] synonym: "B09-40" BROAD OMO:0003000 [BIRNLEX:1773, NIFSTD:SumsDB_abbrevSource] synonym: "B09-40" EXACT [BIRNLEX:1773] synonym: "Brodmann (1909) area 40" EXACT [BIRNLEX:1773] synonym: "Brodmann area 40" EXACT [FMA:68637] synonym: "Brodmann area 40, supramarginal" EXACT [BIRNLEX:1773] synonym: "Supramarginal area 40" EXACT [FMA:68637] xref: BIRNLEX:1773 xref: FMA:68637 xref: neuronames:2408 xref: UMLS:C1272501 {source="BIRNLEX:1773"} xref: Wikipedia:Supramarginal_gyrus is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0002688 {notes="consider merging many sources treat as synonymous"} ! supramarginal gyrus [Term] id: UBERON:0013581 name: metapodium bone 1 def: "A metapodium bone that is part of a digit 1 plus metapodial segment." [OBOL:automatic] synonym: "metapodium 1" EXACT [] synonym: "metapodium I" EXACT [] is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:5006048 ! digit 1 plus metapodial segment [Term] id: UBERON:0013582 name: metapodium bone 2 def: "A metapodium bone that is part of a digit 2 plus metapodial segment." [OBOL:automatic] synonym: "metapodium 2" EXACT [] synonym: "metapodium II" EXACT [] is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:5006049 ! digit 2 plus metapodial segment [Term] id: UBERON:0013583 name: metapodium bone 3 def: "A metapodial bone that is associated with digit III." [http://orcid.org/0000-0002-6601-2165] synonym: "3rd metapodium bone" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cannon bone" NARROW [NCBITaxon:9788, Wikipedia:Equine_forelimb_anatomy#Metacarpal_bones] synonym: "metapodial bone III" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "metapodium 3" EXACT [] synonym: "metapodium III" EXACT [] is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:5006050 ! digit 3 plus metapodial segment [Term] id: UBERON:0013584 name: metapodium bone 4 def: "A metapodium bone that is part of a digit 4 plus metapodial segment." [OBOL:automatic] synonym: "metapodium 4" EXACT [] synonym: "metapodium IV" EXACT [] is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:5006051 ! digit 4 plus metapodial segment [Term] id: UBERON:0013585 name: metapodium bone 5 def: "A metapodium bone that is part of a digit 5 plus metapodial segment." [OBOL:automatic] synonym: "metapodium 5" EXACT [] synonym: "metapodium V" EXACT [] is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:5006052 ! digit 5 plus metapodial segment [Term] id: UBERON:0013586 name: fused metapodial bones 3 and 4 def: "An element formed from the fusion of metapodium 3 and metapodium 4 (i.e. either metatarsals 3 and 4 or metacarpals 3 and 4)." [http://orcid.org/0000-0001-7920-5321] synonym: "fused metapodials 3/4" EXACT [] synonym: "metapodial 3+4" RELATED [] synonym: "os metapodiale III et IV" EXACT OMO:0003011 [] is_a: UBERON:0003821 ! metapodium bone relationship: present_in_taxon NCBITaxon:91561 property_value: curator_notes "this class can be used in annotation when it is unclear whether the element is a fusion of the metacarpal and metatarsal elements." xsd:string [Term] id: UBERON:0013587 name: fused metacarpal bones 3 and 4 def: "An element formed from the fusion of metacarpal 3 and metacarpal 4." [http://orcid.org/0000-0001-7920-5321] synonym: "fused metacarpal 3/4" EXACT [] synonym: "metacarpal 3+4" RELATED [] synonym: "os metacarpale III et IV" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 property_value: taxon_notes "In many artiodactyls, the 3rd & 4th metapodials are fused, creating a main metapodial." xsd:string [Term] id: UBERON:0013588 name: fused metatarsal bones 3 and 4 def: "An element formed from the fusion of metatarsal 3 and metatarsal 4." [http://orcid.org/0000-0001-7920-5321] synonym: "fused metatarsal 3/4" EXACT [] synonym: "metatarsal 3+4" RELATED [] synonym: "os metatarsale III et IV (Ru)" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 property_value: taxon_notes "In many artiodactyls, the 3rd & 4th metapodials are fused, creating a main metapodial." xsd:string [Term] id: UBERON:0013589 name: koniocortex def: "Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 1-3 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex." [http://www.medilexicon.com/medicaldictionary.php?t=47303] xref: neuronames:2471 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0013590 name: cruciate sulcus def: "A deep groove which runs transversely across the rostro-dorsal surface of the cerebrum and which is one of the landmarks on the cerebral cortex." [http://medical-dictionary.thefreedictionary.com/cruciate+sulcus] synonym: "cruciate sulci" EXACT OMO:0003004 [] is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0013591 name: postsylvian sulcus is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013592 name: presylvian sulcus is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013593 name: suprasylvian sulcus is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013594 name: ectosylvian sulcus is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013595 name: postlateral sulcus is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013596 name: brain coronal sulcus synonym: "coronal sulcus" BROAD INCONSISTENT [] synonym: "coronal sulcus of brain" EXACT [] is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013598 name: accessory nucleus of optic tract def: "One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions." [http://www.medilexicon.com/medicaldictionary.php?t=61308] synonym: "nuclei accessorii tractus optici" EXACT OMO:0003011 [] synonym: "nucleus of accessory optic system" EXACT [] synonym: "terminal nucleus of accessory optic tract" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=61308] xref: FMA:256154 is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0035594 ! accessory optic system property_value: taxon_notes "most vertebrates have at least one AON. Mammals have 4.[ISBN:0471888893]" xsd:string [Term] id: UBERON:0013599 name: dorsal accessory nucleus of optic tract synonym: "dorsal terminal nucleus of accessory optic tract" EXACT [] synonym: "dorsal terminal nucleus of the accessory optic tract" EXACT [ABA:DT] synonym: "nucleus accessorius posterior tractus optici" EXACT OMO:0003011 [FMA:77651, FMA:TA] synonym: "posterior accessory nucleus of optic tract" EXACT [FMA:77651] synonym: "posterior terminal nucleus of accessory optic tract" EXACT [] xref: BAMS:DT xref: DMBA:16590 xref: FMA:77651 xref: MBA:75 xref: neuronames:1823 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013600 name: lateral accessory nucleus of optic tract synonym: "lateral terminal nucleus of the accessory optic tract" EXACT [ABA:LT] synonym: "nucleus accessorius lateralis tractus optici" EXACT OMO:0003011 [FMA:77652, FMA:TA] xref: BAMS:LT xref: DHBA:13236 xref: FMA:77652 xref: MBA:66 xref: neuronames:1843 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013601 name: medial accessory nucleus of optic tract comment: The medial terminal nucleus is usually very prominent but it is reduced in primates (except, curiously, the tarsier), megachiropterans, Cynocephalus and Bradypus. Metatherians have a large medial terminal nucleus[Pettigrew et al. (1989)] synonym: "medial terminal nucleus of the accessory optic tract" EXACT [ABA:MT] synonym: "nucleus accessorius medialis tractus optici" EXACT OMO:0003011 [FMA:77653, FMA:TA] xref: BAMS:MT xref: FMA:77653 xref: MBA:58 xref: neuronames:1069 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013605 name: layer of lateral geniculate body is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0001926 ! lateral geniculate body [Term] id: UBERON:0013606 name: magnocellular layer of dorsal nucleus of lateral geniculate body comment: Rods; necessary for the perception of movement, depth, and small differences in brightness[WP] synonym: "lateral geniculate nucleus magnocellular layer" EXACT [] synonym: "magnocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata magnocellularia" BROAD [] synonym: "strata magnocellularia nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76989, FMA:TA] xref: DHBA:10431 xref: FMA:76989 xref: PBA:128013078 is_a: UBERON:0013605 ! layer of lateral geniculate body relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013607 name: parvocellular layer of dorsal nucleus of lateral geniculate body comment: Cones; long- and medium-wavelength ("red" and "green" cones); necessary for the perception of color and form (fine details).[WP] synonym: "parvocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata parvocellularia" BROAD [] synonym: "strata parvocellularia nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76992, FMA:TA] xref: FMA:76992 xref: PBA:128013091 is_a: UBERON:0013605 ! layer of lateral geniculate body relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013608 name: inferior olive dorsal accessory nucleus synonym: "dorsal accessory nucleus of inferior olivary complex" EXACT [] xref: EMAPA:37612 {source="MA:th"} xref: MA:0001042 xref: neuronames:750 is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus [Term] id: UBERON:0013609 name: inferior olive medial accessory nucleus synonym: "medial accessory nucleus of inferior olivary complex" EXACT [] xref: EMAPA:37613 {source="MA:th"} xref: MA:0001044 xref: neuronames:751 is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus [Term] id: UBERON:0013610 name: inferior olive ventral accessory nucleus synonym: "ventral accessory nucleus of inferior olivary complex" EXACT [] is_a: UBERON:0007244 {source="cjm"} ! inferior olivary nucleus [Term] id: UBERON:0013612 name: lower jaw cingulum synonym: "cingulid" BROAD [] synonym: "tooth cingulid" RELATED [] is_a: UBERON:0017295 ! cingulum of tooth relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0013613 name: upper jaw cingulum is_a: UBERON:0017295 ! cingulum of tooth relationship: part_of UBERON:0001709 ! upper jaw region property_value: external_definition "A ridge that girdles the base of a upper molar tooth" xsd:string {source="http://en.wiktionary.org/wiki/cingulum"} [Term] id: UBERON:0013614 name: fasciculus aberans def: "The fasciulus aberrans is a distinct bundle of fibers at the dorsal aspect of the anterior commisure. These fibers travel in the internal capsule between the putamen and caudate nuclei, and cross the midline to connect the dorsal neocortex of the two hemispheres. When the fasciculus aberrans is absent, the fibers connecting the neocortex of the two hemispheres takes a diffderent route through the external capsule[Johnson et al., (1982a, 1982b, 1994)]." [MorphoBank:177] is_a: UBERON:0002473 ! intercerebral commissure is_a: UBERON:0022248 ! cerebral nerve fasciculus [Term] id: UBERON:0013615 name: koniocellular layer of dorsal nucleus of lateral geniculate body comment: Short-wavelength "blue" cones.[WP] synonym: "konioocellular layer of lateral geniculate nucleus" EXACT [] synonym: "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76988, FMA:TA] xref: FMA:76988 is_a: UBERON:0013605 ! layer of lateral geniculate body relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013616 name: primary molar tooth subset: pheno_slim synonym: "deciduous molar tooth" EXACT [FMA:84206] synonym: "primary molar tooth" EXACT [FMA:84206] synonym: "temporary molar tooth" EXACT [FMA:84206] xref: FMA:84206 xref: SCTID:368703003 is_a: UBERON:0003655 ! molar tooth is_a: UBERON:0007115 ! deciduous tooth property_value: editor_note "TODO - logical definition" xsd:string [Term] id: UBERON:0013617 name: upper primary molar tooth def: "A primary molar tooth that is part of a upper jaw region." [OBOL:automatic] synonym: "primary upper molar tooth" EXACT [] synonym: "upper deciduous molar" EXACT [] synonym: "upper deciduous molar tooth" EXACT [FMA:84210] synonym: "upper primary molar tooth" EXACT [FMA:84210] xref: FMA:84210 xref: SCTID:422318005 is_a: UBERON:0003666 ! upper jaw molar is_a: UBERON:0013616 ! primary molar tooth is_a: UBERON:0018616 ! primary upper tooth [Term] id: UBERON:0013618 name: secondary molar tooth subset: pheno_slim synonym: "permanent molar tooth" EXACT [FMA:84207] synonym: "secondary molar tooth" EXACT [FMA:84207] xref: FMA:84207 xref: SCTID:421593002 is_a: UBERON:0003655 ! molar tooth is_a: UBERON:0007775 ! secondary tooth [Term] id: UBERON:0013619 name: upper secondary molar tooth def: "A secondary molar tooth that is part of a upper jaw region." [OBOL:automatic] synonym: "maxillary secondary molar tooth" EXACT [FMA:55720] synonym: "upper permanent molar tooth" EXACT [FMA:55720] synonym: "upper secondary molar tooth" EXACT [FMA:55720] xref: FMA:55720 is_a: UBERON:0003666 ! upper jaw molar is_a: UBERON:0013618 ! secondary molar tooth is_a: UBERON:0018613 ! secondary upper tooth [Term] id: UBERON:0013620 name: lower primary molar tooth def: "A primary molar tooth that is part of a lower jaw region." [OBOL:automatic] synonym: "lower deciduous molar tooth" EXACT [FMA:84213] synonym: "primary lower molar tooth" EXACT [] xref: FMA:84213 xref: SCTID:421482001 is_a: UBERON:0003667 ! lower jaw molar is_a: UBERON:0013616 ! primary molar tooth is_a: UBERON:0018617 ! primary lower tooth [Term] id: UBERON:0013621 name: lower secondary molar tooth def: "A secondary molar tooth that is part of a lower jaw region." [OBOL:automatic] synonym: "lower permanent molar" EXACT [] synonym: "lower permanent molar tooth" EXACT [FMA:55721] synonym: "mandibular secondary molar tooth" EXACT [FMA:55721] xref: FMA:55721 is_a: UBERON:0003667 ! lower jaw molar is_a: UBERON:0013618 ! secondary molar tooth is_a: UBERON:0018614 ! permanent lower tooth [Term] id: UBERON:0013622 name: manual autopod pad def: "An autopod pad that is part of a manus." [OBOL:automatic] synonym: "foot pad of manus" RELATED [] synonym: "manual foot pad" RELATED [] is_a: UBERON:0001519 ! skin of manus is_a: UBERON:0012348 ! autopod pad [Term] id: UBERON:0013623 name: pedal autopod pad def: "An autopod pad that is part of a pes." [OBOL:automatic] synonym: "foot pad of pes" RELATED [] synonym: "pedal foot pad" RELATED [] is_a: UBERON:0001513 ! skin of pes is_a: UBERON:0012348 ! autopod pad [Term] id: UBERON:0013626 name: medial metatarsal pad synonym: "thenar pad" EXACT [] is_a: UBERON:0008840 ! plantar pad [Term] id: UBERON:0013627 name: lateral metatarsal pad synonym: "hypothenar pad" EXACT [] is_a: UBERON:0008840 ! plantar pad [Term] id: UBERON:0013628 name: pollical pad synonym: "interdigital pad 1 of manus" EXACT [] is_a: UBERON:0003533 ! manual digit skin is_a: UBERON:0012349 ! digital pad is_a: UBERON:0013622 ! manual autopod pad relationship: part_of UBERON:0001463 ! manual digit 1 [Term] id: UBERON:0013629 name: hallical pad synonym: "interdigital pad 1 of pes" EXACT [] is_a: UBERON:0003530 ! pedal digit skin is_a: UBERON:0012349 ! digital pad is_a: UBERON:0013623 ! pedal autopod pad relationship: part_of UBERON:0003631 ! pedal digit 1 [Term] id: UBERON:0013630 name: short bone def: "Short bones are designated as those bones that are as wide as they are long. Their primary function is to provide support and stability with little to no movement. They are one of five types of bones: long, short, flat, irregular and sesamoid. Examples of these bones include the tarsals in the foot and the carpals in the hand." [Wikipedia:Short_bone] xref: FMA:7475 xref: NCIT:C33545 xref: SCTID:332807009 xref: Wikipedia:Short_bone is_a: UBERON:0001474 {source="NCIT"} ! bone element property_value: editor_note "TODO - make subclass links" xsd:string [Term] id: UBERON:0013631 name: sesamoid element def: "Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation." [PSPUB:0000169, VSAO:0000137] comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage. synonym: "sesamoid" EXACT [VSAO:0000137] xref: VSAO:0000137 is_a: UBERON:0010911 {source="VSAO"} ! ossicle [Term] id: UBERON:0013632 name: sesamoid cartilage def: "A sesamoid element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "cartilago sesamoidea" EXACT [FMA:55379] synonym: "sesamoid cartilage of cricopharyngeal ligament" EXACT [FMA:55379] xref: FMA:55379 is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0013631 ! sesamoid element [Term] id: UBERON:0013633 name: intertrochanteric crest def: "The intertrochanteric crest is a bony ridge located on the posterior side of the head of the femur, stretching obliquely downward and medially from the summit of the greater trochanter to the lesser trochanter." [Wikipedia:Intertrochanteric_crest] comment: Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head xref: FMA:75100 xref: Wikipedia:Intertrochanteric_crest is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0013634 name: intertrochanteric line def: "The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur that stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur." [Wikipedia:Intertrochanteric_line] xref: FMA:74587 xref: Wikipedia:Intertrochanteric_line is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0013635 name: sphincter colli muscle synonym: "sphincter colli" EXACT [] is_a: UBERON:0002377 ! muscle of neck property_value: structure_notes "The m. sphincter in the head region can be divided into 2 layers: M. sphincter colli profundus and superficialis; in studied placentals, the deepest layer has circular fibers, while the superficial layer has oblique and longitudinal fibers. In non-mammalian vertebrates (if differentiated) and in monotremes both the superficialis and the profundus layers are circular ('sphincter') muscles (Shumacher, 1956; Saban, 1971)." xsd:string {source="MorphoBank"} [Term] id: UBERON:0013636 name: epithelium of intestinal villus def: "An epithelium that is part of a intestinal villus." [OBOL:automatic] synonym: "intestinal villus epithelium" EXACT [FMA:63587] synonym: "villous epithelium" RELATED [] synonym: "villus epithelium" RELATED [] xref: FMA:63587 is_a: UBERON:0001902 ! epithelium of small intestine relationship: part_of UBERON:0001213 ! intestinal villus relationship: part_of UBERON:0001902 {source="FMA"} ! epithelium of small intestine [Term] id: UBERON:0013637 name: prostate gland lateral lobe def: "The prostate gland lobe that is located on the lateral side of the organ." [ncithesaurus:Lateral_Lobe_of_the_Prostate] synonym: "lateral lobe of prostate" EXACT [FMA:19577] synonym: "lateral lobe of prostate gland" EXACT [FMA:19577] synonym: "lateral prostate" RELATED [] synonym: "lateral ventral lobe of prostate gland" RELATED [MorphoBank:MorphoBank] xref: EMAPA:29822 xref: FMA:19577 xref: MA:0003125 xref: NCIT:C13092 is_a: UBERON:0001328 ! lobe of prostate is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013638 name: horny papilla of tongue synonym: "horny papilla" EXACT [] synonym: "horny papillae" RELATED OMO:0003004 [] is_a: UBERON:0001726 ! papilla of tongue property_value: taxon_notes "In carnivores, functions to hold on to meat as it is being cut by the teeth" xsd:string [Term] id: UBERON:0013639 name: mechanical papilla of tongue synonym: "mechanical papilla" EXACT [] synonym: "mechanical papillae" RELATED OMO:0003004 [] is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0013640 name: internal cheek pouch comment: Lined with oral epithelium synonym: "internal buccal pouch" EXACT [] is_a: UBERON:0008802 ! cheek pouch [Term] id: UBERON:0013641 name: external cheek pouch comment: may be lined with fur synonym: "external buccal pouch" EXACT [] is_a: UBERON:0008802 ! cheek pouch [Term] id: UBERON:0013642 name: ring of oral cilia is_a: UBERON:0000062 ! organ [Term] id: UBERON:0013643 name: lophophore def: "A ring of ciliated tentacles surrounding the mouth." [Wikipedia:Lophophore] xref: Wikipedia:Lophophore is_a: UBERON:0013642 ! ring of oral cilia relationship: present_in_taxon NCBITaxon:10205 relationship: present_in_taxon NCBITaxon:120557 relationship: present_in_taxon NCBITaxon:43120 property_value: taxon_notes "In the Entoprocta the anus is within the ring of the lophophore" xsd:string [Term] id: UBERON:0013644 name: duodenal ampulla def: "The very first part of the duodenum which is slightly dilated." [Wikipedia:Duodenal_cap] subset: human_reference_atlas synonym: "ampulla (duodenum)" EXACT [FMA:14927] synonym: "ampulla duodeni" EXACT [FMA:TA] synonym: "ampulla of duodenum" EXACT [FMA:14927] synonym: "bulbus (duodenum)" EXACT [FMA:14927] synonym: "bulbus duodeni" EXACT [FMA:TA] synonym: "duodenal cap" EXACT [FMA:14927] synonym: "duodenal cap viewed radiologically" EXACT [FMA:14927] xref: FMA:14927 xref: SCTID:362149005 xref: Wikipedia:Duodenal_cap is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0002114 ! duodenum relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.2/assets/3d-vh-f-small-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb" xsd:anyURI [Term] id: UBERON:0013645 name: gular gland def: "A gland that is part of the gular region (throat)." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0011154 ! gular region [Term] id: UBERON:0013646 name: buccal nerve def: "The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth." [Wikipedia:Buccal_nerve] synonym: "buccinator branch" RELATED [Wikipedia:Buccal_nerve] synonym: "buccinator nerve" EXACT [FMA:53066] synonym: "long buccal nerve" EXACT [FMA:53066] synonym: "long buccal nerve" RELATED [Wikipedia:Buccal_nerve] xref: BAMS:bucn xref: FMA:53066 xref: SCTID:280253000 xref: Wikipedia:Buccal_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0013647 name: lateral pterygoid nerve def: "A nerve that innervates the lateral pterygoid muscle." [UBERON:cjm] synonym: "branch of buccal nerve to lateral pterygoid" EXACT [FMA:53107] synonym: "external pterygoid nerve" RELATED [Wikipedia:Lateral_pterygoid_nerve] synonym: "nerve to lateral pterygoid" EXACT [FMA:53107] synonym: "nervus pterygoideus lateralis" EXACT [FMA:TA] xref: FMA:53107 xref: SCTID:48852002 xref: Wikipedia:Lateral_pterygoid_nerve is_a: UBERON:0011779 ! nerve of head region property_value: external_definition "The nerve to the Pterygoideus externus frequently arises in conjunction with the buccinator nerve, but it may be given off separately from the anterior division of the mandibular nerve. It enters the deep surface of the muscle." xsd:string {source="Wikipedia:Lateral_pterygoid_nerve"} [Term] id: UBERON:0013648 name: masseteric artery def: "The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery." [Wikipedia:Masseteric_artery] subset: human_reference_atlas synonym: "arteria masseterica" EXACT OMO:0003011 [Wikipedia:Masseteric_artery] xref: FMA:49739 xref: NCIT:C53052 xref: SCTID:147864007 xref: UMLS:C0226149 {source="ncithesaurus:Masseteric_Artery"} xref: Wikipedia:Masseteric_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013649 name: fused tarsal bones 1 and 2 def: "A tarsal bone that is formed from the fusion of the 1st and 2nd tarsal bones." [UBERON:skansa] synonym: "fused tarsals 1 and 2" EXACT [] synonym: "os cuneiforme mediointermedium" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os tarsale I et II" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "tarsals 1+2" RELATED [] is_a: UBERON:0010721 ! distal tarsal bone relationship: present_in_taxon NCBITaxon:9788 [Term] id: UBERON:0013653 name: velar skeleton def: "Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches." [http://orcid.org/0000-0002-6601-2165, ISBN:9780226315683] synonym: "skeleton of velum" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0010912 ! subdivision of skeleton relationship: never_in_taxon NCBITaxon:7776 relationship: part_of UBERON:0008895 {notes="in hagfishes it is difficult to separate neurocranium from visceral skeleton"} ! splanchnocranium relationship: present_in_taxon NCBITaxon:7762 [Term] id: UBERON:0013655 name: elastica externa of notochord synonym: "elastica externa" EXACT [XAO:0001020] synonym: "membrana elastica externa" EXACT [] synonym: "notochordal sheath" RELATED [XAO:0001020] xref: XAO:0001020 is_a: UBERON:0000479 {source="XAO"} ! tissue property_value: external_definition "Notochordal membrane covering derived from notochordal epithelium. Its first indication is at NF stage 24, and it is a distinct membrane by NF stage 28[XAO:0001020]." xsd:string {source="XAO:0001020"} property_value: taxon_notes "The notochordal sheath in amphioxus has a complex three-layered organization with the outer, middle and inner layer The outer and middle layer are composed of collagen fibers of different thickness and course, that correspond to collagen type I and collagen type III in vertebrates, respectively, and the inner layer is amorphous, resembles basal lamina, and is closely attached to the notochord by hemidesmosome junctions." xsd:string {source="PMID:16848152"} [Term] id: UBERON:0013656 name: dulla def: "A diverticulum on the lingual aspect of the soft palate of male dromedaries which may be inflated with air and be extruded from the oral cavity during rut." [ISBN:0470961694] synonym: "dulaa" EXACT [] synonym: "dulah" EXACT [] xref: Wikipedia:Dulla_(organ) is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0013657 name: hump def: "A fatty deposit found on the back of camels." [ISBN:0174480199] synonym: "camel hump" EXACT [] synonym: "CamelHump" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001137 ! dorsum [Term] id: UBERON:0013658 name: corpus cavernosum maxillaris def: "A bulbous ridge of highly vascularized tissue that runs along the center of the hard palate, expanding cranially to form two large lobes that terminate under the tip of the rostral palate, with another enlarged node at the caudal terminus." [PMID:23450839] synonym: "palatal corpus cavernosum maxillaris" EXACT [] synonym: "palatal organ" BROAD [] synonym: "palatal reital organ" EXACT [] is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0007375 ! roof of mouth [Term] id: UBERON:0013659 name: spongiose tissue of corpus cavernosum maxillaris def: "An erectile tissue that is part of a corpus cavernosum maxillaris." [OBOL:automatic] is_a: UBERON:0008324 ! erectile tissue relationship: part_of UBERON:0013658 ! corpus cavernosum maxillaris [Term] id: UBERON:0013670 name: midline of corpus cavernosum maxillaris synonym: "midline of palatal organ" BROAD [] is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0013658 ! corpus cavernosum maxillaris [Term] id: UBERON:0013671 name: nerve ending of of corpus cavernosum maxillaris synonym: "nerve of palatal organ" BROAD [] is_a: UBERON:0012453 ! nerve ending relationship: part_of UBERON:0013658 ! corpus cavernosum maxillaris [Term] id: UBERON:0013672 name: priapium def: "A complex muscular and bony clasping and copulatory organ derived mainly from the pelvic fins, found under the head of male Phallostethoidea with the anus opening on one side and the genital pore on the other. The structure varies among family members. Hook-like ctenactia articulate basally with the aproctal axial which is movably articulated with the proctal axial bone itself, suspended anteriorly by the outer (and sometimes inner) pulvinular bone from the cleithrum and perhaps the urohyal. Other elements are the priapal ribs, the anteplural cartilage (supporting elements along with the cleithrum and the pulvinar), the toxactinium, the infrasulcar and the uncus (forming the claspers along with the ctenactinium), the penial, basipenial, papillary, prepapillary and cristate bones (forming the papillary unit)." [http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium, http://species.wikimedia.org/wiki/Template\:Zt3363.45, ISBN:047175644X] comment: Contains ducts from kidney, gonads, terminal parts of intestine[ISBN:047175644X] synonym: "priapia" RELATED OMO:0003004 [] is_a: UBERON:0008811 ! intromittent organ relationship: part_of UBERON:0000033 ! head relationship: present_in_taxon NCBITaxon:270656 [Term] id: UBERON:0013673 name: os priapium def: "Bone of the priapium." [http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium] synonym: "ossa priapium" RELATED OMO:0003004 [] is_a: UBERON:0003457 ! head bone is_a: UBERON:0007719 ! bone of reproductive organ relationship: part_of UBERON:0013672 ! priapium [Term] id: UBERON:0013674 name: ctenactinium def: "A curved rod-like clasper on the posterior side of the priapium in Phallostethidae." [http://en.academic.ru/dic.nsf/en_ichthyology/3786/ctenactinium] synonym: "ctenactinia" RELATED OMO:0003004 [] is_a: UBERON:0003457 ! head bone is_a: UBERON:0007719 ! bone of reproductive organ relationship: part_of UBERON:0013672 ! priapium [Term] id: UBERON:0013675 name: toxactinium def: "A long curved projection from the anterior end of the priapium in some Phallostethidae." [http://en.academic.ru/dic.nsf/en_ichthyology/17293/toxactinium] synonym: "toxactinia" RELATED OMO:0003004 [] is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0013672 ! priapium [Term] id: UBERON:0013676 name: aproctal bone of priapium def: "The ventral element in the priapium of the Phallostethidae on which articulate the ctenactinia (q.v.). Also called aproctal or pelvic bone." [http://en.academic.ru/dic.nsf/en_ichthyology/1032/axial] synonym: "aproctal bone" RELATED [] synonym: "axial bone" RELATED [] synonym: "pevic bone" RELATED [] is_a: UBERON:0003457 ! head bone is_a: UBERON:0007719 ! bone of reproductive organ relationship: part_of UBERON:0013672 ! priapium [Term] id: UBERON:0013677 name: serrated projection of ctenactinium synonym: "ctenactinial serra" RELATED [] synonym: "ctenactinium serra" RELATED [] synonym: "serrae" BROAD OMO:0003004 [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0013674 ! ctenactinium [Term] id: UBERON:0013678 name: anatomical line between inner canthi def: "An anatomical line of the face that connects the two inner (medial) canthi of the eye. The length of this line is known as the inter canthal distance." [http://orcid.org/0000-0002-6601-2165] synonym: "bicanthal plane" RELATED [] synonym: "inter inner canthal line" EXACT [] synonym: "inter medial canthal line" EXACT [] synonym: "inter-canthal line" BROAD [] synonym: "intercanthal line" BROAD [] xref: FMA:284806 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0013679 name: inner canthus of right eye def: "An inner canthus that is part of a right eye." [OBOL:automatic] synonym: "medial angle of right eye" RELATED [FMA:59319] synonym: "medial canthus of right eye" RELATED [FMA:59319] synonym: "right inner canthus" EXACT [] synonym: "right medial canthus" EXACT [] synonym: "right medial palpebral commissure" EXACT [FMA:59319] xref: FMA:59319 is_a: UBERON:0005611 ! inner canthus relationship: part_of UBERON:0004549 ! right eye [Term] id: UBERON:0013680 name: inner canthus of left eye def: "An inner canthus that is part of a left eye." [OBOL:automatic] synonym: "left inner canthus" EXACT [] synonym: "left medial canthus" EXACT [] synonym: "left medial palpebral commissure" EXACT [FMA:59320] synonym: "medial angle of left eye" RELATED [FMA:59320] synonym: "medial canthus of left eye" RELATED [FMA:59320] xref: FMA:59320 is_a: UBERON:0005611 ! inner canthus relationship: part_of UBERON:0004548 ! left eye [Term] id: UBERON:0013682 name: peripheral region of retina def: "Region of retina that extends from central retina to ora serrata. Peripheral retina is dominated by rods and also has less ganglion cells and is not as thick as central retina. It is responsible for peripheral and night vision." [https://github.com/obophenotype/uberon/issues/1542, https://github.com/obophenotype/uberon/issues/216, https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/, XAO:0004458] synonym: "peripheral retina" EXACT [XAO:0004458] xref: SCTID:264141008 xref: XAO:0004458 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000966 ! retina property_value: external_definition "Anatomical region comprising the peripheral part of the retina[XAO:0004458]." xsd:string {source="XAO:0004458"} [Term] id: UBERON:0013683 name: left dorsal thalamus def: "A dorsal thalamus that is in_the_left_side_of a diencephalon." [OBOL:automatic] subset: pheno_slim synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 is_a: UBERON:0004703 ! dorsal thalamus is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013684 name: right dorsal thalamus def: "A dorsal thalamus that is in_the_right_side_of a diencephalon." [OBOL:automatic] subset: pheno_slim synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 is_a: UBERON:0004703 ! dorsal thalamus is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013685 name: foramen of skull def: "Anatomical space that is an opening in a bone of the skull." [http://orcid.org/0000-0002-6601-2165, TAO:curator] synonym: "cranial conduit" NARROW [FMA:53165] synonym: "cranial foramen" NARROW [] synonym: "foramen of skull" EXACT [Wikipedia:Foramina_of_the_skull] synonym: "foramina of the skull" RELATED OMO:0003004 [Wikipedia:Foramina_of_the_skull] xref: FMA:53165 xref: SCTID:276742007 xref: Wikipedia:Foramina_of_the_skull is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0013686 name: anatomical conduit space def: "An anatomical space which is the lumen of some anatomical conduit and connects two or more spaces together[FMA,modified]." [FMA:9338, http://orcid.org/0000-0002-6601-2165] subset: common_anatomy synonym: "foramen space" NARROW [] xref: FMA:9338 is_a: UBERON:0000464 {source="FMA"} ! anatomical space relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0013687 name: pericranium def: "Periosteum that is part of a skull." [OBOL:automatic] synonym: "periosteum externum cranii" EXACT OMO:0003011 [FMA:76623, FMA:TA] xref: FMA:76623 is_a: UBERON:0002515 ! periosteum relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0013688 name: tonsil germinal center def: "A germinal center that is part of a tonsil." [OBOL:automatic] subset: human_reference_atlas synonym: "tonsil reaction center" RELATED [CALOHA:TS-1288] xref: CALOHA:TS-1288 is_a: UBERON:0010754 ! germinal center relationship: part_of UBERON:0002372 ! tonsil relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "consider adding related terms, e.g. secondary lymphoid tissue of tonsil" xsd:string property_value: external_definition "The germinal center or reaction center is the activated center of a lymphoid follicle in secondary lymphoid tissue where B-lymphocytes are stimulated by antigens and helper T cells (T-lymphocytes, helper-inducer) are stimulated to generate memory cells. Here, the germinal center of a tonsil[TS-1288]." xsd:string {source="TS-1288"} [Term] id: UBERON:0013689 name: appendix lymphoid tissue def: "Lymphoid tissue located in the appendix." [CALOHA:TS-1268] synonym: "appendix lymphoid" RELATED [CALOHA:TS-1268] synonym: "lymphatic tissue of appendix" EXACT [OBOL:automatic] synonym: "lymphatic tissue of vermiform appendix" EXACT [OBOL:automatic] xref: CALOHA:TS-1268 is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:0013691 name: buttock def: "A zone of soft tissue located on the posterior of the lateral side of the pelvic region corresponding to the gluteal muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Buttocks] subset: efo_slim subset: pheno_slim synonym: "buttocks" RELATED OMO:0003004 [Wikipedia:Buttocks] synonym: "clunis" EXACT [FMA:25245] synonym: "gluteal part of pelvic girdle" EXACT [FMA:25245] synonym: "gluteal region" EXACT [FMA:25245] synonym: "regio glutealis" EXACT OMO:0003011 [FMA:TA] xref: CALOHA:TS-2224 xref: EFO:0003070 xref: FMA:25245 xref: MESH:D002081 xref: NCIT:C89806 xref: SCTID:362677002 xref: UMLS:C0006497 {source="ncithesaurus:Buttock"} xref: Wikipedia:Buttocks is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0034929 ! external soft tissue zone relationship: fma_set_term FMA:76446 relationship: part_of UBERON:0001271 {source="FMA"} ! pelvic girdle region property_value: has_relational_adjective "gluteal" xsd:string [Term] id: UBERON:0013692 name: inframammary fold def: "Inframammary fold, inframammary crease or inframammary line is the feature of human anatomy which is a natural boundary of a breast from below, the place where the breast and the chest meet. The choice of the term depends on the prominence of the feature." [CALOHA:TS-2350] synonym: "inframammary breast" RELATED [CALOHA:TS-2350] synonym: "inframammary crease" RELATED [CALOHA:TS-2350] xref: CALOHA:TS-2350 xref: FMA:62109 is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0013693 name: cerebral cortex neuropil def: "A neuropil that is part of a cerebral cortex [Automatically generated definition]." [OBOL:automatic] synonym: "neuropil of cerebral cortex" EXACT [OBOL:automatic] xref: CALOHA:TS-2396 is_a: UBERON:0002606 ! neuropil relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0013694 name: brain endothelium def: "Vascular endothelium found in blood vessels of the blood-brain-barrier." [CALOHA:TS-0092] synonym: "cerebromicrovascular endothelium" RELATED [CALOHA:TS-0092] xref: BTO:0001852 xref: BTO:0003248 xref: CALOHA:TS-0092 is_a: UBERON:0001986 ! endothelium relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0013695 name: colon endothelium def: "Vascular endothelium found in colon blood vessels." [CALOHA:TS-0162] synonym: "colon endothelial cell" RELATED [CALOHA:TS-0162] synonym: "colon endothelial cells" RELATED [CALOHA:TS-0162] synonym: "colonic endothelial cell" RELATED [CALOHA:TS-0162] synonym: "colonic endothelium" RELATED [CALOHA:TS-0162] synonym: "colorectal endothelial cell" RELATED [CALOHA:TS-0162] synonym: "colorectal endothelium" RELATED [CALOHA:TS-0162] xref: CALOHA:TS-0162 is_a: UBERON:0000397 ! colonic epithelium is_a: UBERON:0001986 ! endothelium [Term] id: UBERON:0013696 name: tonsil epithelium def: "The epithelium that forms the surface of the tonsil dips into the underlying connective tissue in numerous places, forming crypts kown as tonsillar crypts. Stratified squamous epithelium, that may be heavily infiltrated by lymphocytes. Epithelial cells are present in the germinal as well as in the periphery of the nodule." [CALOHA:TS-2070] subset: human_reference_atlas synonym: "epithelium of tonsil" RELATED [CALOHA:TS-2070] synonym: "tonsil epithelial cell" RELATED [CALOHA:TS-2070] xref: CALOHA:TS-2070 is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0002372 ! tonsil relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013697 name: exocrine pancreas epithelium def: "Epithelium lining the exocrine pancreas." [CALOHA:TS-2108] synonym: "epithelium of exocrine pancreas" RELATED [CALOHA:TS-2108] synonym: "exocrine pancreas epithelial cell" RELATED [CALOHA:TS-2108] xref: CALOHA:TS-2108 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0013698 name: strand of pubic hair def: "A hair in the frontal genital area of adolescent and adult humans, located on and around the sex organs, the crotch, and sometimes at the top of the inside of the thighs, in the pubic region around the pubis bone." [Wikipedia:Pubic_hair] subset: pheno_slim synonym: "pubic hair" EXACT [FMA:54319] xref: FMA:54319 xref: NCIT:C33424 xref: UMLS:C1305636 {source="ncithesaurus:Pubic_Hair"} xref: Wikipedia:Pubic_hair is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0013699 name: strand of axillary hair def: "A strand of hair that is part of a axilla." [OBOL:automatic] subset: pheno_slim synonym: "axilla hair" EXACT [] synonym: "axillary hair" EXACT [FMA:54253] synonym: "hair of axilla" EXACT [FMA:54253] xref: FMA:54253 xref: SCTID:280911007 is_a: UBERON:0001037 ! strand of hair relationship: fma_set_term FMA:70756 relationship: part_of UBERON:0009472 ! axilla [Term] id: UBERON:0013700 name: axial musculature def: "Musculature of the head and neck, spine, and ribs." [HP:0003327] xref: EHDAA2:0000159 xref: EMAPA:18166 is_a: UBERON:0001015 ! musculature relationship: part_of UBERON:0013701 ! main body axis [Term] id: UBERON:0013701 name: main body axis def: "A principle subdivision of an organism that includes all structures along the primary axis, typically the anterior-posterior axis, from head to tail, including structures of the body proper where present (for example, ribs), but excluding appendages." [https://orcid.org/0000-0002-6601-2165] subset: non_informative is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0013702 name: body proper def: "The region of the organism associated with the visceral organs." [AEO:0000103] subset: non_informative synonym: "body" RELATED [AEO:0000103] synonym: "whole body" RELATED [BTO:0001489] xref: AEO:0000103 xref: BTO:0001489 xref: FMA:231424 is_a: UBERON:0000475 {source="AEO"} ! organism subdivision relationship: part_of UBERON:0013701 ! main body axis property_value: external_definition "Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the vertebral column and ribcage. Examples: There is only one body proper[FMA:231424]." xsd:string {source="FMA:231424"} [Term] id: UBERON:0013703 name: integumentary projection def: "Anatomical projection that is part of the integumentl system." [http://orcid.org/0000-0002-6601-2165] synonym: "skin projection" NARROW [] is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0006003 ! integumentary adnexa [Term] id: UBERON:0013704 name: notochordal canal def: "A tubular passage that extends from the primitive pit into the head process during the early stages of embryonic development in mammals. It perforates the splanchnopleure layer so that the yolk sac and the amnion are connected temporarily." [http://medical-dictionary.thefreedictionary.com/notochordal+canal] synonym: "chordal canal" RELATED [] xref: FMA:293127 xref: NCIT:C34230 xref: UMLS:C1518428 {source="ncithesaurus:Notochordal_Canal"} is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0006268 ! notochordal process [Term] id: UBERON:0013705 name: fascia of Scarpa def: "The deep layer (fascia of Scarpa) is a layer of the anterior abdominal wall." [Wikipedia:Fascia_of_Scarpa] synonym: "Colles fascia" RELATED [FMA:19923] synonym: "Colles' fascia" EXACT [FMA:19923] synonym: "deep layer of superficial fascia of abdomen" EXACT [FMA:19923] synonym: "fascia of Scarpa" RELATED [Wikipedia:Fascia_of_Scarpa] synonym: "membranous layer of subcutaneous tissue of abdomen" EXACT [FMA:19923] synonym: "membranous layer of superficial fascia of abdomen" EXACT [FMA:19923] synonym: "Scarpa's fascia" EXACT [FMA:19923] synonym: "Scarpa's fascia" RELATED [Wikipedia:Fascia_of_Scarpa] synonym: "stratum membranosum telae subcutaneae abdominis" EXACT [FMA:TA] xref: FMA:19923 xref: Wikipedia:Fascia_of_Scarpa is_a: UBERON:0003427 ! abdominal fat pad relationship: part_of UBERON:0006635 ! anterior abdominal wall [Term] id: UBERON:0013706 name: bone spine xref: FMA:82508 is_a: UBERON:0004530 {source="cjm"} ! bony projection [Term] id: UBERON:0013707 name: iliac spine def: "A bone spine that is part of a ilium." [OBOL:automatic] xref: FMA:82509 xref: SCTID:272712007 xref: Wikipedia:Iliac_spine is_a: UBERON:0013706 ! bone spine relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:0013708 name: anterior superior iliac spine def: "The anterior superior iliac spine (ASIS) is an important landmark of surface anatomy. It refers to the anterior extremity of the iliac crest of the pelvis, which provides attachment for the inguinal ligament, the sartorius muscle, and the tensor fasciae latae. ASIS provides a clue in identifying some other clinical landmarks, including: McBurney's point Gardner's line Roser-NC)laton line A - Anterior (front, like the face) S - Superior (towards the head, opposite to feet) I - Iliac S - Spine." [Wikipedia:Anterior_superior_iliac_spine] synonym: "anterior superior iliac spine" RELATED [Wikipedia:Anterior_superior_iliac_spine] synonym: "anterior superior iliac spine (volume)" EXACT [FMA:49465] synonym: "anterior superior spine" RELATED [Wikipedia:Anterior_superior_iliac_spine] xref: FMA:49465 xref: SCTID:182031001 xref: Wikipedia:Anterior_superior_iliac_spine is_a: UBERON:0013712 ! anterior iliac spine [Term] id: UBERON:0013709 name: anterior inferior iliac spine def: "The anterior inferior iliac spine (AIIS) is a bony eminence on the anterior border of the hip bone, or, more precisely, the wing of the ilium (i.e. the upper lateral parts of the pelvis)." [Wikipedia:Anterior_inferior_iliac_spine] synonym: "anterior inferior iliac spine (volume)" EXACT [FMA:63614] synonym: "anterior inferior spine" RELATED [Wikipedia:Anterior_inferior_iliac_spine] xref: FMA:63614 xref: SCTID:182030000 xref: Wikipedia:Anterior_inferior_iliac_spine is_a: UBERON:0013712 ! anterior iliac spine [Term] id: UBERON:0013710 name: posterior superior iliac spine def: "The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior superior iliac spine serves for the attachment of the oblique portion of the posterior sacroiliac ligaments and the Multifidus." [Wikipedia:Posterior_superior_iliac_spine] synonym: "posterior superior iliac spine (volume)" EXACT [FMA:49468] synonym: "posterior superior spine of the ilium" RELATED [Wikipedia:Posterior_superior_iliac_spine] xref: FMA:49468 xref: SCTID:182032008 xref: Wikipedia:Posterior_superior_iliac_spine is_a: UBERON:0013713 ! posterior iliac spine [Term] id: UBERON:0013711 name: posterior inferior iliac spine def: "The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior inferior iliac spine corresponds with the posterior extremity of the auricular surface." [Wikipedia:Posterior_inferior_iliac_spine] synonym: "posterior inferior iliac spine (volume)" EXACT [FMA:63615] synonym: "posterior inferior spine of the ilium" RELATED [] xref: FMA:63615 xref: SCTID:182033003 xref: Wikipedia:Posterior_inferior_iliac_spine is_a: UBERON:0013713 ! posterior iliac spine [Term] id: UBERON:0013712 name: anterior iliac spine is_a: UBERON:0013707 ! iliac spine [Term] id: UBERON:0013713 name: posterior iliac spine is_a: UBERON:0013707 ! iliac spine [Term] id: UBERON:0013715 name: ilio-marsupialis muscle def: "A muscle that originates on the anterior iliac spine that passes through the inguinal canal before dividing into four branches, each attaching to a pouch nipple." [http://orcid.org/0000-0002-6601-2165, PMID:12432001] synonym: "compressor mammae" RELATED [] synonym: "ilio-marsupialis" EXACT [] synonym: "M. compressor mammae" RELATED [] synonym: "M. ilio-marsupialis" EXACT [] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0008844 {source="DOI:10.1046/j.1469-7580.2002.00087.x"} ! gubernaculum (female) property_value: function_notes "Associated with lumbar musculature. originally postulated to be involved in milk ejection, or for mammary support and for retraction of the teats." xsd:string property_value: function_notes "In pouched marsupials, the ilio-marsupialis is less well developed, but may help in gland contraction to express milk during suckling (Griffiths & Slater, 1988) and it carries the genitofemoral nerve that innervates the mammary gland (Renfree, 1979) [DOI:10.1046/j.1469-7580.2002.00087.x]" xsd:string property_value: function_notes "in pouchless marsupials provides mechanical support for the attached young [DOI:10.1046/j.1469-7580.2002.00087.x]" xsd:string [Term] id: UBERON:0013716 name: branch of ilio-marsupialis muscle def: "One of the branches of the ilio-marsupialis that attaches to a pouch nipple." [http://orcid.org/0000-0002-6601-2165, PMID:12432001] synonym: "retractor mammae" RELATED [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0013715 ! ilio-marsupialis muscle [Term] id: UBERON:0013717 name: superficial inguinal ring def: "The exit of the inguinal canal." [Wikipedia:Superficial_inguinal_ring] synonym: "cutaneous inguinal ring" RELATED [Wikipedia:Superficial_inguinal_ring] synonym: "external abdominal ring" RELATED [Wikipedia:Superficial_inguinal_ring] synonym: "external inguinal ring" RELATED [Wikipedia:Superficial_inguinal_ring] synonym: "external ring" RELATED [Wikipedia:Superficial_inguinal_ring] synonym: "subcutaneous inguinal ring" RELATED [Wikipedia:Superficial_inguinal_ring] xref: FMA:19926 xref: NCIT:C32547 xref: SCTID:361907002 xref: Wikipedia:Superficial_inguinal_ring is_a: UBERON:0006674 ! inguinal ring property_value: external_definition "The superficial inguinal ring is an anatomical structure in the anterior wall of the human abdomen. It is a triangular opening that forms the exit of the inguinal canal, which houses the ilioinguinal nerve, the genital branch of the genitofemoral nerve, and the spermatic cord (in men) or the round ligament (in women). At the other end of the canal, the deep inguinal ring forms the entrance. It is also called the subcutaneous inguinal ring or external inguinal ring. It is found within the aponeurosis of the external oblique, immediately above the crest of the pubis, 1 centimeter above and lateral to the pubic tubercle. It has medial and lateral crura. It is at the layer of the aponeurosis of the obliquus externus abdominis[Wikipedia:Superficial_inguinal_ring]." xsd:string {source="Wikipedia:Superficial_inguinal_ring"} [Term] id: UBERON:0013718 name: dartos muscle def: "The dartos fascia is a fat-free layer of smooth muscular fiber outside the external spermatic fascia but below the skin. It is a continuation of Scarpa's Fascia which is a membranous layer of the subcutaneous tissue in the abdominal wall." [Wikipedia:Dartos] synonym: "dartos muscle" RELATED [Wikipedia:Dartos] synonym: "dartos tunic" RELATED [Wikipedia:Dartos] synonym: "tunica dartos" RELATED OMO:0003011 [Wikipedia:Dartos] xref: FMA:18088 xref: Wikipedia:Dartos is_a: UBERON:0008982 ! fascia property_value: has_relational_adjective "dartoic" xsd:string property_value: has_relational_adjective "dartoid" xsd:string [Term] id: UBERON:0013719 name: dartos muscle of scrotum def: "A dartos muscle that is part of a male reproductive system." [OBOL:automatic] synonym: "dartos layer of scrotum" EXACT [] synonym: "dartos tunic" RELATED [Wikipedia:Dartos] xref: FMA:27647 xref: SCTID:279582001 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013718 ! dartos muscle relationship: part_of UBERON:0001300 ! scrotum property_value: external_ontology_notes "the FMA class appears to belong here due to its synonyms." xsd:string {external_ontology="FMA"} property_value: function_notes "The tunica dartos acts to regulate the temperature of the testicles, which promotes spermatogenesis. It does this by expanding or contracting to wrinkle the scrotal skin. The wrinkled (rugose) appearance of the scrotum is due to this layer of fascia" xsd:string {source="WP"} [Term] id: UBERON:0013720 name: dartos muscle of labia majora def: "A dartos muscle that is part of a female reproductive system." [OBOL:automatic] synonym: "dartos layer of labia" EXACT [] synonym: "dartos muliebris" RELATED [Wikipedia:Dartos] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013718 ! dartos muscle relationship: part_of UBERON:0004085 ! labium majora [Term] id: UBERON:0013721 name: deep inguinal ring def: "The entrance to the inguinal canal." [Wikipedia:Deep_inguinal_ring] synonym: "abdominal inguinal ring" RELATED [Wikipedia:Deep_inguinal_ring] synonym: "annulus inguinalis profundus" RELATED OMO:0003011 [Wikipedia:Deep_inguinal_ring] synonym: "internal abdominal ring" RELATED [Wikipedia:Deep_inguinal_ring] synonym: "internal inguinal ring" RELATED [Wikipedia:Deep_inguinal_ring] synonym: "internal ring" RELATED [Wikipedia:Deep_inguinal_ring] xref: FMA:19927 xref: NCIT:C32832 xref: SCTID:278831000 xref: Wikipedia:Deep_inguinal_ring is_a: UBERON:0006674 ! inguinal ring [Term] id: UBERON:0013725 name: anterior talofibular ligament def: "The anterior talofibular ligament is a ligament in the ankle. It passes from the anterior margin of the fibular malleolus, anteriorly and medially, to the talus bone, in front of its lateral articular facet. It is one of the lateral ligaments of the ankle and prevents the foot from sliding forward in relation to the shin." [Wikipedia:Anterior_talofibular_ligament] synonym: "ligamentum talofibulare anterius" EXACT OMO:0003011 [Wikipedia:Anterior_talofibular_ligament] xref: FMA:44083 xref: SCTID:242467001 xref: Wikipedia:Anterior_talofibular_ligament is_a: UBERON:0011970 {source="FMA"} ! talofibular ligament [Term] id: UBERON:0013726 name: posterior talofibular ligament def: "The posterior talofibular ligament, runs almost horizontally from the depression at the medial and back part of the fibular malleolus (lateral malleolus) to a prominent tubercle on the posterior surface of the talus immediately lateral to the groove for the tendon of the flexor hallucis longus." [Wikipedia:Posterior_talofibular_ligament] synonym: "ligamentum talofibulare posterius" EXACT OMO:0003011 [Wikipedia:Posterior_talofibular_ligament] xref: FMA:44084 xref: SCTID:242570004 xref: Wikipedia:Posterior_talofibular_ligament is_a: UBERON:0011970 {source="FMA"} ! talofibular ligament [Term] id: UBERON:0013727 name: notochordal fluid def: "Fluid contained within the notochordal canal." [http://animaldiversity.org/accounts/Latimeria_chalumnae/, http://orcid.org/0000-0002-6601-2165] comment: Distinct feature of coelocanths synonym: "notochord fluid" EXACT [] synonym: "portion of notochordal fluid" EXACT [] is_a: UBERON:0006314 ! bodily fluid relationship: part_of UBERON:0036242 ! post-embryonic notochord [Term] id: UBERON:0013730 name: mycetome def: "A specialized organ that is linked to the gut in beetles and host to a symbiotic yeast. The yeast cells assist in the digestion of less nutritious foods, supply needed B-vitamins and sterols, and provide resistance to certain toxins." [ENVO:01000166, PLB:plb, Wikipedia:Lasioderma_serricorne] xref: ENVO:01000166 is_a: UBERON:0010001 ! cell cluster organ relationship: part_of UBERON:0003917 ! arthropod fat body property_value: external_definition "either of a pair of organs in an insect (as a true bug) that consist of a cellular mass of mycetocytes and are located one in either fat body. a cell in various insects (as most true bugs) of a type that contains unicellular and prob. symbiotic fungi and is usu. clustered with others of its kind into paired mycetomes." xsd:string {source="http://www.merriam-webster.com/dictionary/mycetome"} [Term] id: UBERON:0013731 name: basilar papilla def: "The auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals." [Wikipedia:Basilar_papilla] synonym: "basilar papillae" RELATED OMO:0003004 [http://orcid.org/0000-0002-6601-2165] synonym: "papilla basilaris" EXACT OMO:0003011 [AAO:0011018] synonym: "sensory epithelium of recessus basilaris" RELATED [] xref: AAO:0011018 xref: XAO:0003145 is_a: UBERON:0000020 ! sense organ relationship: never_in_taxon NCBITaxon:40674 relationship: part_of UBERON:0001855 {source="MA-abduced"} ! cochlear duct of membranous labyrinth property_value: editor_note "consider classifying as a sensory epithelium" xsd:string property_value: external_definition "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011018", ontology="AAO", source="XAO:curator"} [Term] id: UBERON:0013732 name: vestibule of nasal cavity def: "A tube leading from the external naris to the nasal cavity." [AAO:0000984, AAO:EJS] xref: AAO:0000984 is_a: UBERON:0001349 ! externally connecting tube lumen relationship: part_of UBERON:0002268 {source="AAO"} ! olfactory organ [Term] id: UBERON:0013733 name: caudal linear nucleus synonym: "CLi" EXACT OMO:0003000 [PMID:21653852] synonym: "posterior linear nucleus" EXACT [OBOL:automatic] xref: FMA:231003 xref: HBA:9470 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain [Term] id: UBERON:0013734 name: rostral linear nucleus def: "Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat." [NLX:144319] synonym: "anterior linear nucleus" EXACT [OBOL:automatic] synonym: "RLi" EXACT OMO:0003000 [PMID:16292327] synonym: "rostral linear nucleus of the raphe" RELATED [PMID:21653852] xref: BAMS:LR xref: DHBA:12234 xref: DMBA:16748 xref: HBA:9471 xref: MBA:197 xref: neuronames:1808 xref: NLX:144319 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 {source="NIFSTD"} ! ventral tegmental area property_value: editor_note "Brain Info does not list the linear nuclei as part of the ventral tegmental area but as a co-area of the midbrain tegmentum. Am assuming the rostral linear nucleus of the raphe is synonymous, but needs further review. (NIF)" xsd:string [Term] id: UBERON:0013736 name: interfascicular linear nucleus synonym: "central linear nucleus" RELATED [] synonym: "IF" RELATED OMO:0003000 [PMID:21653852] synonym: "intermediate linear nucleus" RELATED [FMA:77503] xref: DHBA:12262 xref: FMA:77503 xref: HBA:9472 xref: MBA:12 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0013737 name: paranigral nucleus synonym: "PN" BROAD OMO:0003000 [PMID:21653852] xref: DHBA:12265 xref: FMA:77497 xref: HBA:9474 xref: neuronames:1252 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 {source="FMA"} ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 {source="PMID:21653852"} ! ventral tegmental area [Term] id: UBERON:0013738 name: parabrachial pigmental nucleus def: "Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human." [NLX:144307] synonym: "parabrachial pigmented nucleus" EXACT [NLX:144307] synonym: "PBP" BROAD OMO:0003000 [PMID:21653852] xref: BAMS:PBP xref: DHBA:12263 xref: FMA:77496 xref: HBA:9473 xref: neuronames:2264 xref: NLX:144307 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 {source="NIF", source="PMID:21653852"} ! ventral tegmental area [Term] id: UBERON:0013739 name: base of crypt of Lieberkuhn def: "The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell." [http://orcid.org/0000-0002-6601-2165, UBERON:md] synonym: "basal portion of intestinal gland" EXACT [] synonym: "base of intestinal gland" EXACT [] synonym: "base part of epithelium of intestinal gland" EXACT [] is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn property_value: taxon_notes "Clearly defined prolifieration zones found in mammals. Not observed in agnathostomes, larval amphibians. Described in advanced species of fish and adult amphibians." xsd:string {source="ISBN:9780521617147"} [Term] id: UBERON:0013740 name: wall of crypt of Lieberkuhn def: "The lateral parts of an intestinal crypt, continuous distally with the base and proximally with the intestinal villus epithelium." [http://orcid.org/0000-0002-6601-2165, UBERON:md] synonym: "wall of intestinal gland" EXACT [] synonym: "wall part of epithelium of intestinal gland" EXACT [] is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn [Term] id: UBERON:0013741 name: base of crypt of Lieberkuhn of large intestine def: "A base of crypt of Lieberkuhn that is part of a large intestine." [OBOL:automatic] is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0013739 ! base of crypt of Lieberkuhn [Term] id: UBERON:0013742 name: wall of crypt of Lieberkuhn of large intestine def: "A wall of crypt of Lieberkuhn that is part of a large intestine." [OBOL:automatic] is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0013740 ! wall of crypt of Lieberkuhn [Term] id: UBERON:0013743 name: base of crypt of Lieberkuhn of small intestine def: "The basal portion (further from lumen) of a intestinal crypt that is located in the small intestine." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001902 ! epithelium of small intestine is_a: UBERON:0013739 ! base of crypt of Lieberkuhn [Term] id: UBERON:0013744 name: wall of crypt of Lieberkuhn of small intestine def: "The lateral parts of an intestinal crypt that is located in the small intestine, continuous distally with the base and proximally with the intestinal villus epithelium." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001902 ! epithelium of small intestine is_a: UBERON:0013740 ! wall of crypt of Lieberkuhn [Term] id: UBERON:0013745 name: zona intermedia of adrenal gland def: "A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata." [http://www.endotext.org/adrenal/adrenal1/adrenal1.html] comment: currently postulated to be a site of initiation of adrenocyte proliferation and differentiation and a zone containing the adrenal cortical stem cells. Present in some rat species. subset: pheno_slim synonym: "zona intermedia" EXACT [] synonym: "zona intermedia of suprarenal gland" EXACT [] is_a: UBERON:0009753 {source="cjm"} ! adrenal gland cortex zone [Term] id: UBERON:0013746 name: basibranchial element def: "Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [https://github.com/obophenotype/uberon/issues/205, TAO:wd] synonym: "basibranchial" EXACT [ZFA:0000170] synonym: "basibranchials" EXACT OMO:0003004 [ZFA:0000170] synonym: "copula 1" RELATED [] synonym: "copula I" RELATED [AAO:0000686] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 {source="ZFA"} ! post-hyoid pharyngeal arch skeleton property_value: external_definition "Median ventral cartilage or bony element at the ventral point of a branchial arch, behind the tongue[http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is]." xsd:string {source="http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is"} [Term] id: UBERON:0013747 name: basibranchial cartilage def: "A basibranchial element that is cartilage. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [http://orcid.org/0000-0002-6601-2165, TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013746 ! basibranchial element [Term] id: UBERON:0013748 name: ulnar metaphysis def: "A metaphysis that is part of a ulna." [OBOL:automatic] subset: pheno_slim synonym: "metaphysis of ulna" EXACT [FMA:33767] xref: FMA:33767 is_a: UBERON:0001438 ! metaphysis relationship: part_of UBERON:0001010 {source="FMA"} ! diaphysis of ulna [Term] id: UBERON:0013749 name: metaphysis of humerus def: "A metaphysis that is part of a metaphysis." [OBOL:automatic] subset: pheno_slim synonym: "diaphyseal end of humerus" EXACT [FMA:32830] synonym: "humeral metaphysis" EXACT [FMA:32830] xref: FMA:32830 is_a: UBERON:0001438 ! metaphysis relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0013750 name: metaphysis of tibia def: "A metaphysis that is part of a tibia." [OBOL:automatic] subset: pheno_slim synonym: "tibial metaphysis" EXACT [FMA:33135] xref: EMAPA:37772 {source="MA:th"} xref: FMA:33135 xref: MA:0003106 is_a: UBERON:0001438 ! metaphysis relationship: part_of UBERON:0000979 ! tibia [Term] id: UBERON:0013751 name: metaphysis of radius def: "A metaphysis that is part of a radius bone." [OBOL:automatic] subset: pheno_slim synonym: "radial metaphysis" EXACT [FMA:33789] xref: FMA:33789 is_a: UBERON:0001438 ! metaphysis relationship: part_of UBERON:0001423 ! radius bone [Term] id: UBERON:0013752 name: diaphysis of metacarpal bone def: "A diaphysis that is part of a metacarpal bone." [OBOL:automatic] synonym: "body of metacarpal" EXACT [FMA:33804] synonym: "corpus ossis metacarpi" EXACT [FMA:TA] synonym: "metacarpal bone diaphysis" EXACT [FMA:33804] synonym: "shaft of metacarpal" EXACT [FMA:33804] synonym: "shaft of metacarpal bone" EXACT [FMA:33804] xref: FMA:33804 is_a: UBERON:0004769 ! diaphysis relationship: part_of UBERON:0002374 ! metacarpal bone [Term] id: UBERON:0013753 name: distal epiphysis of metacarpal bone def: "A distal epiphysis that is part of a metacarpal bone." [OBOL:automatic] subset: pheno_slim synonym: "caput ossis metacarpi" EXACT [FMA:TA] synonym: "distal end of metacarpal bone" EXACT [FMA:33798] synonym: "head of metacarpal bone" EXACT [FMA:33798] synonym: "lower end of metacarpal bone" EXACT [FMA:33798] xref: FMA:33798 is_a: UBERON:0004379 ! distal epiphysis is_a: UBERON:0004390 ! epiphysis of metacarpal bone [Term] id: UBERON:0013754 name: integumentary system layer def: "An organ component layer that is part of a integumental system." [OBOL:automatic] subset: non_informative synonym: "layer of skin" NARROW [] synonym: "skin layer" NARROW [] xref: SCTID:314820002 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0013755 name: arterial blood def: "A blood that is part of a artery." [OBOL:automatic] subset: pheno_slim synonym: "arterial blood" EXACT [FMA:83066] synonym: "blood in artery" EXACT [FMA:83066] synonym: "portion of arterial blood" EXACT [FMA:83066] xref: BTO:0006188 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:83066 is_a: UBERON:0000178 ! blood [Term] id: UBERON:0013756 name: venous blood def: "A blood that is part of a vein." [OBOL:automatic] synonym: "blood in vein" EXACT [FMA:83067] synonym: "portion of venous blood" EXACT [FMA:83067] synonym: "venous blood" EXACT [FMA:83067] xref: BTO:0006187 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:83067 is_a: UBERON:0000178 ! blood [Term] id: UBERON:0013757 name: capillary blood def: "A blood that is part of a capillary." [OBOL:automatic] synonym: "blood in capillary" EXACT [] synonym: "portion of blood in capillary" EXACT [FMA:263901] synonym: "portion of capillary blood" EXACT [] xref: FMA:263901 xref: NCIT:C32212 is_a: UBERON:0000178 ! blood [Term] id: UBERON:0013758 name: cervical os def: "One of two openings in the uterine cervix." [http://orcid.org/0000-0002-6601-2165] synonym: "cervical opening" RELATED [] synonym: "uterine cervix opening" RELATED [] xref: FMA:20422 is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000002 ! uterine cervix [Term] id: UBERON:0013759 name: internal cervical os def: "Opening of uterine cervix into the body of the uterus." [http://orcid.org/0000-0002-6601-2165] synonym: "internal orifice" RELATED [Wikipedia:Internal_orifice_of_the_uterus] synonym: "internal os" RELATED [FMA:17747, Wikipedia:Internal_orifice_of_the_uterus] xref: FMA:17747 xref: SCTID:279886007 xref: Wikipedia:Internal_orifice_of_the_uterus is_a: UBERON:0013758 ! cervical os property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: external_definition "The internal orifice of the uterus (or internal orifice of the cervix uteri or internal os) is an interior narrowing of the uterine cavity. It corresponds to a slight constriction known as the isthmus that can be observed on the surface of the uterus about midway between the apex and base[Wikipedia:Internal_orifice_of_the_uterus]." xsd:string {source="Wikipedia:Internal_orifice_of_the_uterus"} [Term] id: UBERON:0013760 name: external cervical os def: "Opening of uterine cervix into the vagina." [http://orcid.org/0000-0002-6601-2165] synonym: "external os" RELATED [Wikipedia:External_orifice_of_the_uterus] synonym: "external os of uterus" EXACT [FMA:76836] synonym: "ostium of uterus" RELATED [Wikipedia:External_orifice_of_the_uterus] synonym: "ostium uteri" EXACT [FMA:TA] xref: FMA:76836 xref: NCIT:C32491 xref: SCTID:362255005 xref: UMLS:C1512165 {source="ncithesaurus:Ectocervical_Os"} xref: Wikipedia:External_orifice_of_the_uterus is_a: UBERON:0013758 ! cervical os relationship: part_of UBERON:0012249 ! ectocervix property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: external_definition "The external orifice of the uterus (or ostium of uterus, or external os) is a small, depressed, somewhat circular aperture on the rounded extremity of the vaginal portion of the cervix. Through this aperture, the cervical cavity communicates with that of the vagina. The external orifice is bounded by two lips, an anterior and a posterior. The anterior is shorter and thicker, though it projects lower than the posterior because of the slope of the cervix. Normally, both lips are in contact with the posterior vaginal wall. Prior to pregnancy, the external orifice has a rounded shape when viewed through the vaginal canal (as through a speculum). Following parturition, the orifice takes on an appearance more like a transverse slit or is 'H-shaped'[Wikipedia:External_orifice_of_the_uterus]." xsd:string {source="Wikipedia:External_orifice_of_the_uterus"} [Term] id: UBERON:0013761 name: cervical cavity def: "The cavity formed by the walls of the cervix." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "canal of the cervix" RELATED [Wikipedia:Canal_of_the_cervix] synonym: "cavity of cervix" RELATED [BTO:0002249] synonym: "cervical canal" RELATED [Wikipedia:Canal_of_the_cervix] synonym: "cervical canal of uterus" RELATED [BTO:0002249] synonym: "endocervical" RELATED [Wikipedia:Canal_of_the_cervix] synonym: "endocervical canal" RELATED [BTO:0002249, Wikipedia:Canal_of_the_cervix] synonym: "endocervix" RELATED [Wikipedia:Canal_of_the_cervix] synonym: "lumen of cervix of uterus" EXACT [FMA:17746] xref: BTO:0002249 xref: FMA:17746 xref: Wikipedia:Canal_of_the_cervix is_a: UBERON:0002553 ! anatomical cavity relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013763 name: obsolete sensory epithelium of spiral organ is_obsolete: true [Term] id: UBERON:0013764 name: common crus of semicircular duct def: "A nonampullary end of the superior or posterior semicircular ducts." [http://www.medilexicon.com/medicaldictionary.php?s=common+membranous+limb+of+semicircular+ducts] synonym: "common crus" BROAD [] synonym: "common membranous limb of membranous semicircular ducts" EXACT [] synonym: "common membranous limb of semicircular ducts" EXACT [FMA:71881] synonym: "crus membranaceum commune ductus semicircularis" EXACT OMO:0003011 [FMA:TA] synonym: "crus membranaceum commune ductuum semicircularium" EXACT OMO:0003011 [] xref: FMA:71881 xref: TAO:0005411 xref: ZFA:0005411 is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001856 ! semicircular duct [Term] id: UBERON:0013765 name: digestive system element def: "Any of the organs or elements that are part of the digestive system. Examples: tongue, esophagus, spleen, crop, lunge feeding organ, tooth elements." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class subset: pheno_slim synonym: "digestive organ" EXACT [] synonym: "digestive system organ" EXACT [] xref: EMAPA:37843 {source="MA:th"} xref: SCTID:272627002 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0013766 name: epicanthal fold def: "A fold of skin of the upper eyelid that partially covers the inner corner of the eye." [MGI:smb, VT:0006168] subset: pheno_slim synonym: "epicanthic fold" EXACT [] synonym: "epicanthus" EXACT [] synonym: "eye fold" EXACT [] synonym: "medial canthic fold" EXACT [FMA:59370] synonym: "palpebronasal fold" EXACT [FMA:59370] synonym: "plica palpebronasalis" EXACT OMO:0003011 [] xref: FMA:59370 xref: SCTID:74824007 xref: Wikipedia:Epicanthic_fold is_a: UBERON:0001457 ! skin of eyelid relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0013767 name: frontal process of maxilla def: "A plate of bone from the maxilla that that projects upward, medialward, and backward, by the side of the nose, forming part of its lateral boundary[WP,modified]." [Wikipedia:Frontal_process_of_maxilla] subset: human_reference_atlas synonym: "frontal appendage of maxilla" RELATED [FMA:52894] synonym: "frontal process of the maxilla" RELATED [Wikipedia:Frontal_process_of_maxilla] synonym: "nasal process of maxilla" RELATED [Wikipedia:Frontal_process_of_maxilla] synonym: "processus frontalis (maxilla)" EXACT [FMA:52894] synonym: "processus frontalis maxillae" RELATED OMO:0003011 [Wikipedia:Frontal_process_of_maxilla] xref: FMA:52894 xref: SCTID:368869008 xref: Wikipedia:Frontal_process_of_maxilla is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0013768 name: great vessel of heart def: "Great vessels is a term used to refer collectively to the large vessels that bring blood to and from the heart." [Wikipedia:Great_vessels] comment: Groupings may vary - typically pulmonary vessels and aorta and vena cavae subset: grouping_class synonym: "great vessel" BROAD [] synonym: "great vessel of thorax" EXACT [] xref: EMAPA:36460 xref: SCTID:304066000 xref: Wikipedia:Great_vessels is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0013769 name: uterine lumen def: "An organ cavity that is part of a uterus." [OBOL:automatic] synonym: "cavity of uterus" EXACT [FMA:17745] synonym: "uterine cavity" EXACT [FMA:17745] synonym: "uterine space" EXACT [] xref: EMAPA:36273 xref: FMA:17745 xref: Wikipedia:Uterine_cavity is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0013770 name: intermammary cleft synonym: "intermammary cleavage" RELATED [] synonym: "intermammary sulcus" RELATED [] xref: FMA:55264 is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0013771 name: line connecting laterally paired nipples def: "Line across midline connecting a left and right nipples." [http://orcid.org/0000-0002-6601-2165] synonym: "intermammary line" EXACT [] is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0002100 ! trunk property_value: taxon_notes "In mammals with multiple pairs of nipples, this line is only applicable for laterally homologous nipples" xsd:string [Term] id: UBERON:0013772 name: left nipple def: "A nipple that is in_the_left_side_of a body proper." [OBOL:automatic] subset: pheno_slim xref: FMA:223695 is_a: UBERON:0002030 ! nipple is_a: UBERON:0015212 ! lateral structure property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013773 name: right nipple def: "A nipple that is in_the_right_side_of a body proper." [OBOL:automatic] subset: pheno_slim xref: FMA:223693 is_a: UBERON:0002030 ! nipple is_a: UBERON:0015212 ! lateral structure property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013774 name: diaphysis of metatarsal bone def: "A diaphysis that is part of a metatarsal bone." [OBOL:automatic] subset: pheno_slim synonym: "diaphysis of metatarsal" EXACT [] synonym: "metatarsal bone diaphysis" EXACT [FMA:33826] synonym: "metatarsal diaphysis" EXACT [] synonym: "shaft of metatarsal bone" EXACT [FMA:33826] xref: FMA:33826 is_a: UBERON:0004769 ! diaphysis relationship: part_of UBERON:0001448 ! metatarsal bone [Term] id: UBERON:0013776 name: skin of palmar/plantar part of autopod def: "A zone of skin that is part of a palmar/plantar part of autopod." [OBOL:automatic] is_a: UBERON:0015790 ! autopod skin relationship: part_of UBERON:0008837 ! palmar/plantar part of autopod [Term] id: UBERON:0013777 name: skin of palm of manus def: "A zone of skin that is part of a palmar part of manus." [OBOL:automatic] subset: pheno_slim synonym: "palmar skin of hand" EXACT [FMA:38301] synonym: "skin of palmar area of hand" EXACT [] xref: FMA:38301 xref: SCTID:181544004 is_a: UBERON:0001519 ! skin of manus is_a: UBERON:0013776 ! skin of palmar/plantar part of autopod relationship: part_of UBERON:0001519 {source="FMA"} ! skin of manus relationship: part_of UBERON:0008878 ! palmar part of manus [Term] id: UBERON:0013778 name: skin of sole of pes def: "A zone of skin that is part of a skin of pes." [OBOL:automatic] subset: pheno_slim synonym: "plantar skin of foot" EXACT [FMA:37849] synonym: "skin of plantar part of foot" EXACT [FMA:37849] synonym: "skin of sole of foot" EXACT [FMA:37849] xref: FMA:37849 xref: SCTID:181566006 is_a: UBERON:0001513 ! skin of pes is_a: UBERON:0013776 ! skin of palmar/plantar part of autopod relationship: part_of UBERON:0008338 ! plantar part of pes [Term] id: UBERON:0014169 name: nigrostriatal tract def: "The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83)." [BIRNLEX:4107] synonym: "comb bundle" EXACT [BIRNLEX:4107] synonym: "comb bundle" RELATED [BIRNLEX:4107] synonym: "nigrostriatal bundle" EXACT [BIRNLEX:4107] synonym: "nigrostriatal bundle" RELATED [BIRNLEX:4107] synonym: "nigrostriatal fibers" EXACT [BIRNLEX:4107] synonym: "nigrostriatal fibers" RELATED [BIRNLEX:4107] synonym: "nigrostriatal tract" EXACT [BIRNLEX:4107] synonym: "nucleus caudalis centralis oculomotorii" RELATED OMO:0003011 [NeuroNames:500] synonym: "nucleus centralis nervi oculomotorii" RELATED OMO:0003011 [NeuroNames:500] synonym: "tegmentum mesencephalicum" RELATED OMO:0003011 [NeuroNames:491] xref: BAMS:ns xref: BAMS:nst xref: BIRNLEX:4107 xref: MBA:102 xref: neuronames:491 xref: neuronames:500 {source="BIRNLEX:4107"} xref: UMLS:C0815010 {source="BIRNLEX:4107"} is_a: UBERON:0007702 {source="NIFSTD"} ! tract of brain property_value: editor_note "todo - connect this to dopamine related terms" xsd:string [Term] id: UBERON:0014277 name: piriform cortex layer 1 def: "Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part." [NLXANAT:091003] synonym: "layer 1 of piriform cortex" EXACT [NLXANAT:091003] synonym: "layer 1 of piriform cortex" RELATED [NLXANAT:091003] synonym: "piriform cortex layer 1" EXACT [NLXANAT:091003] synonym: "piriform cortex plexiform layer" EXACT [NLXANAT:091003] synonym: "piriform cortex plexiform layer" RELATED [NLXANAT:091003] synonym: "plexiform layer of piriform cortex" EXACT [NLXANAT:091003] synonym: "plexiform layer of piriform cortex" RELATED [NLXANAT:091003] synonym: "pyriform cortex layer 1" EXACT [NLXANAT:091003] synonym: "pyriform cortex layer 1" RELATED [NLXANAT:091003] xref: NLXANAT:091003 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex [Term] id: UBERON:0014280 name: piriform cortex layer 2 def: "Middle of three cytoarchitecturally defined layers of the piriform cortex characterized by a compact layer of cell bodies. It can be divided into a superficial part and a more densely packed deep part." [NLXANAT:091006] synonym: "layer 2 of piriform cortex" EXACT [NLXANAT:091006] synonym: "layer 2 of piriform cortex" RELATED [NLXANAT:091006] synonym: "layer II of piriform cortex" EXACT [NLXANAT:091006] synonym: "layer II of piriform cortex" RELATED [NLXANAT:091006] synonym: "piriform cortex layer 2" EXACT [NLXANAT:091006] synonym: "piriform cortex layer II" EXACT [NLXANAT:091006] synonym: "piriform cortex layer II" RELATED [NLXANAT:091006] xref: DHBA:11336 xref: NLXANAT:091006 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex [Term] id: UBERON:0014283 name: piriform cortex layer 3 def: "Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2." [NLXANAT:091009] synonym: "layer 3 of piriform cortex" EXACT [NLXANAT:091009] synonym: "layer 3 of piriform cortex" RELATED [NLXANAT:091009] synonym: "piriform cortex layer 3" EXACT [NLXANAT:091009] xref: NLXANAT:091009 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex [Term] id: UBERON:0014284 name: endopiriform nucleus def: "An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. \nAccording to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum." [NLXANAT:091033] synonym: "endopiriform nucleus" EXACT [NLXANAT:091033] synonym: "layer 4 of piriform cortex" EXACT [NLXANAT:091033] synonym: "layer 4 of piriform cortex" RELATED [NLXANAT:091033] synonym: "layer IV of piriform cortex" EXACT [NLXANAT:091033] synonym: "layer IV of piriform cortex" RELATED [NLXANAT:091033] xref: BAMS:EP xref: DHBA:10371 xref: EMAPA:35311 xref: MBA:942 xref: neuronames:2276 xref: NLXANAT:091033 xref: OldNeuroNames:2276 {source="NLXANAT:091033"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 relationship: part_of UBERON:0002023 {source="NIFSTD"} ! claustrum of brain [Term] id: UBERON:0014286 name: dorsal cap of Kooy synonym: "dorsal cap of kooy" EXACT [NLXANAT:100307] xref: NLXANAT:100307 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] id: UBERON:0014287 name: medial accessory olive def: "Regional part of the inferior olivary complex." [NLXANAT:100309] synonym: "MAO" EXACT [NLXANAT:100309] synonym: "medial accessory olive" EXACT [NLXANAT:100309] xref: BAMS:IOma xref: neuronames:751 xref: NLXANAT:100309 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] id: UBERON:0014370 name: extrastriate cortex def: "A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990)." [NLXANAT:200905010] synonym: "extrastriate areas" EXACT [NLXANAT:200905010] synonym: "extrastriate areas" RELATED [NLXANAT:200905010] synonym: "extrastriate cortex" EXACT [NLXANAT:200905010] synonym: "extrastriate cortical area" RELATED [BTO:0004704] synonym: "peristriate cortex" NARROW [Wikipedia:Extrastriate_cortex] xref: BTO:0004704 xref: DHBA:10270 xref: neuronames:1349 xref: NLXANAT:200905010 xref: Wikipedia:Extrastriate_cortex is_a: UBERON:0010009 {source="NIFSTD"} ! aggregate regional part of brain relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex [Term] id: UBERON:0014371 name: future telencephalon def: "Embryonic structure that gives rise to the telencephalon." [ZFA:0000571, ZFA:curator] comment: paired anteriolateral division of the embryonic prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived[MP] synonym: "presumptive telencephalon" EXACT [ZFA:0000571] xref: EHDAA2:0004424 xref: EMAPA:36024 xref: TAO:0000571 xref: ZFA:0000571 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0006240 ! future forebrain [Term] id: UBERON:0014372 name: fibroelastic membrane of larynx def: "A layer of fibrous and elastic fibers, taking the place of the submucosa in the larynx. It is divided by the laryngeal ventricle into two parts: the quadrangular membrane superiorly and the conus elasticus inferiorly." [http://www.medilexicon.com/medicaldictionary.php?t=53910] synonym: "fibro-elastic membrane of larynx" EXACT [FMA:55239] synonym: "membrana fibroelastica laryngis" EXACT OMO:0003011 [http://www.medilexicon.com/medicaldictionary.php?t=53910] xref: FMA:55239 xref: SCTID:361942003 is_a: UBERON:0000094 {source="FMA"} ! membrane organ relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0014374 name: embryoid body def: "Embryoid bodies (EBs) are three-dimensional aggregates of pluripotent stem cells." [EFO:0004988, https://github.com/obophenotype/uberon/issues/245] comment: EDITOR_NOTE in future this class may be ceded to another ontology if it falls outside the scope of in-vivo, non-pathological biology subset: efo_slim synonym: "embryonic body" RELATED [Wikipedia:Embryoid_body] xref: BTO:0001718 xref: EFO:0004988 xref: MESH:D058732 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Embryoid_body is_a: UBERON:0002050 {source="EFO"} ! embryonic structure property_value: external_definition "Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors[BTO]." xsd:string {reference="Dorlands_Medical_Dictionary:MerckSource", source="BTO:0001718"} [Term] id: UBERON:0014375 name: intrinsic muscle of manus def: "Any of the intrinsic muscles of the manus (hand)." [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] synonym: "intrinsic hand muscle" EXACT [] synonym: "intrinsic muscle of hand" EXACT [FMA:42380] xref: FMA:42380 xref: SCTID:244997002 is_a: UBERON:0001500 ! muscle of manus is_a: UBERON:0035112 ! intrinsic muscle relationship: fma_set_term FMA:42372 [Term] id: UBERON:0014376 name: thenar muscle def: "Any of the muscles of the thenar eminence, a raised fleshy area on the palm of the hand near the base of the thumb." [http://medical-dictionary.thefreedictionary.com/Thenar+muscle] subset: pheno_slim synonym: "thenar compartment" RELATED [Wikipedia:Thenar_eminence] synonym: "thenar eminence" RELATED [Wikipedia:Thenar_eminence] synonym: "thenar muscle" RELATED [Wikipedia:Thenar_eminence] synonym: "thenar muscles" RELATED [Wikipedia:Thenar_eminence] xref: FMA:64916 xref: SCTID:181640000 xref: Wikipedia:Thenar_eminence is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus property_value: has_relational_adjective "thenar" xsd:string [Term] id: UBERON:0014377 name: hypothenar muscle def: "Any of three muscles of the palm that control the motion of the little finger." [https://github.com/obophenotype/uberon/issues/1277, Wikipedia:Hypothenar_eminence] comment: The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi synonym: "hypothenar" RELATED [Wikipedia:Hypothenar_eminence] synonym: "hypothenar muscle" RELATED [Wikipedia:Hypothenar_eminence] synonym: "hypothenar muscles" RELATED [Wikipedia:Hypothenar_eminence] xref: FMA:64917 xref: SCTID:181643003 xref: Wikipedia:Hypothenar_eminence is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus [Term] id: UBERON:0014378 name: intrinsic muscle of pes def: "Any of the intrinsic muscles of the pes (foot)." [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] synonym: "intrinsic muscle of foot" EXACT [FMA:65020] xref: FMA:65020 is_a: UBERON:0001498 ! muscle of pes is_a: UBERON:0035112 ! intrinsic muscle [Term] id: UBERON:0014379 name: adductor hallucis muscle def: "The Adductor hallucis (Adductor obliquus hallucis) arises by two headsboblique and transverse and is responsible for adducting the big toe. It is innervated by the lateral plantar nerve. It evolved from the contrahens I muscle as Man's ancestors' thumbs and big toes became opposable." [Wikipedia:Adductor_hallucis_muscle] subset: human_reference_atlas synonym: "adductor hallucis" EXACT [FMA:37454] synonym: "adductor hallucis" RELATED [Wikipedia:Adductor_hallucis_muscle] synonym: "adductor transversus hallucis" RELATED [Wikipedia:Adductor_hallucis_muscle] synonym: "contrahens I muscle" RELATED [Wikipedia:Adductor_hallucis_muscle] xref: FMA:37454 xref: SCTID:181727000 xref: Wikipedia:Adductor_hallucis_muscle is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014380 name: flexor digitorum brevis muscle def: "The flexor digitorum brevis lies in the middle of the sole of the foot, immediately above the central part of the plantar aponeurosis, with which it is firmly united. Its deep surface is separated from the lateral plantar vessels and nerves by a thin layer of fascia." [Wikipedia:Flexor_digitorum_brevis_muscle] subset: human_reference_atlas synonym: "flexor digitorum brevis" EXACT [FMA:37450] synonym: "flexor digitorum brevis" RELATED [Wikipedia:Flexor_digitorum_brevis_muscle] synonym: "flexor digitorum brevis of foot" EXACT [FMA:37450] synonym: "musculus flexor digitorum brevis" EXACT [FMA:TA] xref: EMAPA:36247 xref: FMA:37450 xref: SCTID:181724007 xref: SCTID:79490000 xref: Wikipedia:Flexor_digitorum_brevis_muscle is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014381 name: whorl of hair def: "A patch of hair growing in the opposite direction of the rest of the hair." [Wikipedia:Hair_whorl] comment: Hair whorls occur in most hairy animals, on the body as well as on the head. Hair whorls, also known as crowns, swirls, trichoglyphs, or cowlicks, can be either clockwise or counterclockwise in direction of growth.[WP] subset: pheno_slim synonym: "hair whorl" BROAD [] synonym: "whorl" BROAD [] xref: Wikipedia:Hair_whorl is_a: UBERON:0010164 ! collection of hairs relationship: fma_set_term FMA:76564 [Term] id: UBERON:0014382 name: collection of hairs on head or neck def: "A collection of hairs that is part of a craniocervical region." [OBOL:automatic] is_a: UBERON:0010164 ! collection of hairs relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0014385 name: aryepiglottic fold def: "The entrance of the larynx is a triangular opening, narrow in front, wide behind, and sloping obliquely downward and backward. It is bounded, in front, by the epiglottis; behind, by the apices of the arytenoid cartilages, the corniculate cartilages, and the interarytenoid notch; and on either side, by a fold of mucous membrane, enclosing ligamentous and muscular fibers, stretched between the side of the epiglottis and the apex of the arytenoid cartilage; this is the aryepiglottic fold, on the posterior part of the margin of which the cuneiform cartilage forms a more or less distinct whitish prominence, the cuneiform tubercle. These folds form the upper borders of the quadrangular membrane." [Wikipedia:Aryepiglottic_fold] subset: pheno_slim synonym: "ary-epiglottic fold" EXACT [FMA:55448] synonym: "aryepiglottic folds" RELATED [Wikipedia:Aryepiglottic_fold] synonym: "aryepiglottic sphincter" RELATED [Wikipedia:Aryepiglottic_fold] synonym: "aryepiglottis" RELATED [Wikipedia:Aryepiglottic_fold] synonym: "plica aryepiglottica" RELATED OMO:0003011 [Wikipedia:Aryepiglottic_fold] xref: FMA:55448 xref: NCIT:C32147 xref: SCTID:245503009 xref: UMLS:C1510944 {source="ncithesaurus:Aryteno-epiglottic_Fold"} xref: Wikipedia:Aryepiglottic_fold is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0014386 name: vertebral endplate def: "Either of the the top and bottom portions of the vertebral bodies that interface with the vertebral discs. It is composed of a layer of thickened cancellous bone." [HPO:curators, Wikipedia:Endplates] subset: pheno_slim synonym: "endplate" BROAD [] xref: BTO:0005552 xref: FMA:293500 xref: Wikipedia:Endplates is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001075 ! bony vertebral centrum [Term] id: UBERON:0014387 name: mesenchyme derived from neural crest def: "Mesenchyme that develops_from the neural crest[Automatically generated definition]." [https://github.com/obophenotype/uberon/issues/248, OBOL:automatic] synonym: "mesenchyme from neural crest" EXACT [] synonym: "neural crest derived mesenchyme" EXACT [] synonym: "neural crest mesenchyme" EXACT [] xref: EMAPA:32735 xref: FMA:293883 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0010313 ! neural crest-derived structure [Term] id: UBERON:0014388 name: kidney collecting duct epithelium def: "The simple cuboidal epithelium lining the lumen of kidney collecting ducts." [MGI:anna, MP:0011843] subset: pheno_slim synonym: "collecting duct of renal tubule epithelium" EXACT [] synonym: "epithelium of collecting duct of renal tubule" EXACT [] synonym: "epithelium of renal collecting tubule" EXACT [] xref: EMAPA:37885 {source="MA:th"} is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0004211 ! nephron epithelium relationship: part_of UBERON:0001232 ! collecting duct of renal tubule property_value: taxon_notes "In mouse, the mature and differentiated CD epithelium comprises two unique cells types with principal cells responsible for vasopressin-regulated water reabsorption, and intercalated cells regulating acid-base homeostasis; injury to the epithelium is believed to cause epithelial cells to acquire mesenchymal characteristics via epithelial-mesenchymal transition (EMT), a process through which tubular epithelial cells may transform into interstitial fibroblasts and promote renal fibrosis" xsd:string [Term] id: UBERON:0014389 name: gustatory papilla of tongue def: "A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae." [MGI:smb, MP:0006256] synonym: "gustatory papilla" EXACT [] synonym: "gustatory papillae" RELATED OMO:0003004 [] synonym: "taste papilla" EXACT [] synonym: "taste papillae" RELATED OMO:0003004 [] is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0014390 name: muscle layer of ileum def: "A muscular coat that is part of a ileum." [OBOL:automatic] synonym: "ileal smooth muscle" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "muscularis externa of ileum" EXACT [FMA:14958] synonym: "muscularis propria of ileum" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "smooth muscle of ileum" RELATED [https://orcid.org/0000-0002-6601-2165] xref: BTO:0005574 xref: FMA:14958 is_a: UBERON:0011201 ! muscle layer of small intestine relationship: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0014391 name: palmar/plantar sweat gland def: "A sweat gland that is part of the skin of the palmar part of the manus or plantar part of the pes." [http://orcid.org/0000-0002-6601-2165] synonym: "palm sweat gland" NARROW [] synonym: "palm/sole sweat gland" RELATED [] synonym: "palmar eccrine sweat gland" NARROW [] synonym: "palmar/plantar eccrine sweat gland" RELATED [] synonym: "sweat gland of palmar part of manus" NARROW [] synonym: "sweat gland of palmar/plant part of autopod" RELATED [] is_a: UBERON:0000423 ! eccrine sweat gland relationship: part_of UBERON:0008837 ! palmar/plantar part of autopod property_value: taxon_notes "in mice these are the only sweat glands present" xsd:string {source="MP:0000675"} [Term] id: UBERON:0014392 name: sweat of palm def: "Sweat that is produced by the glands on the palmar and plantar surfaces." [http://orcid.org/0000-0002-6601-2165] synonym: "palm sweat" EXACT [FMA:63084] synonym: "palmar sweat" EXACT [FMA:63084] xref: FMA:63084 is_a: UBERON:0001089 ! sweat property_value: function_notes "serves a purpose of increasing friction on the palms of hands or the pads of paws[WP]" xsd:string [Term] id: UBERON:0014393 name: sweat of axilla def: "Sweat that is produced by the glands of the axilla." [http://orcid.org/0000-0002-6601-2165] synonym: "axillary sweat" EXACT [FMA:63085] xref: FMA:63085 is_a: UBERON:0001089 ! sweat [Term] id: UBERON:0014394 name: uterine fat pad def: "Encapsulated adipose tissue associated with the uterus." [MP:0008900] subset: pheno_slim synonym: "peri-uterine fat pad" RELATED [] synonym: "periuterine fat pad" RELATED [] synonym: "uterine fat depot" EXACT [] xref: EMAPA:37979 {source="MA:th"} is_a: UBERON:0003916 ! fat pad is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0014395 name: proximal mesopodial bone def: "A proximal mesopodial endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0017750 ! proximal mesopodial endochondral element relationship: develops_from UBERON:0017751 ! proximal mesopodial cartilage element [Term] id: UBERON:0014396 name: interscapular fat pad def: "Encapsulated adipose tissue located between the scapulae." [MGI:rbabiuk, MGI:smb] subset: pheno_slim synonym: "interscapular fat depot" EXACT [] is_a: UBERON:0003579 ! shoulder connective tissue is_a: UBERON:0003916 ! fat pad [Term] id: UBERON:0014397 name: lateral process of malleus def: "A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane." [http://www.medilexicon.com/medicaldictionary.php?t=72288] synonym: "malleus process brevis" EXACT [MA:0002994] synonym: "process brevis" RELATED [http://medical-dictionary.thefreedictionary.com/processus+brevis] synonym: "processus lateralis (malleus)" EXACT [FMA:52770] synonym: "processus lateralis mallei" EXACT OMO:0003011 [] synonym: "processus lateralis malleus" EXACT OMO:0003011 [] synonym: "short process of malleus" EXACT [] synonym: "tuberculum mallei" EXACT OMO:0003011 [http://medical-dictionary.thefreedictionary.com/processus+brevis] xref: FMA:52770 xref: MA:0002994 xref: SCTID:368921009 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone [Term] id: UBERON:0014398 name: respiratory muscle def: "Muscle that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: MESH:D012132 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003831 ! respiratory system muscle property_value: curator_notes "this class may be merged with 'respiratory system muscle'; check intercostals" xsd:string [Term] id: UBERON:0014399 name: sinusoidal space def: "An anatomical space that is enclosed by a sinusoid." [OBOL:automatic] synonym: "lumen of sinusoid" EXACT [FMA:63133] synonym: "sinusoid lumen" EXACT [FMA:63133] xref: FMA:63133 is_a: UBERON:0010161 ! lumen of blood vessel relationship: part_of UBERON:0003909 ! sinusoid [Term] id: UBERON:0014400 name: hepatic sinusoidal space def: "A sinusoidal space that is part of a hepatic sinusoid." [OBOL:automatic] synonym: "lumen of hepatic sinusoid" EXACT [FMA:262090] xref: FMA:262090 is_a: UBERON:0014399 ! sinusoidal space relationship: part_of UBERON:0001281 ! hepatic sinusoid [Term] id: UBERON:0014401 name: renal venous blood vessel def: "Any member of the network of tubes that return blood from the renal tissues to the systemic circulation." [MGI:csmith] subset: pheno_slim synonym: "kidney venous blood vessel" EXACT [MA:0002591] synonym: "kidney venous system" RELATED [EMAPA:31450] synonym: "venous blood vessel of kidney" EXACT [] xref: EMAPA:31450 xref: MA:0002591 is_a: UBERON:0003517 ! kidney blood vessel is_a: UBERON:0003920 ! venous blood vessel property_value: external_ontology_notes "we follow MA and MP in distinguishing the venous blood vessel from the vein. The kidney cortex vein is not considered a renal vein, nor is the vasa recta" xsd:string {external_ontology="MA"} [Term] id: UBERON:0014402 name: sex-specific anatomical structure def: "A part of the body present only in a specific gender." [AEO:0000174, AEO:JB] synonym: "gender-specific" EXACT [] synonym: "gender-specific anatomical structure" EXACT [AEO:0000174] synonym: "sex-specific" EXACT [] xref: AEO:0000174 xref: WBbt:0005752 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0014403 name: male anatomical structure def: "A part of the body present only in males." [AEO:0000175, AEO:JB] synonym: "male-specific" RELATED [WBbt:0005757] synonym: "male-specific structure" EXACT [] xref: AEO:0000175 xref: WBbt:0005757 is_a: UBERON:0014402 ! sex-specific anatomical structure relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0014404 name: female anatomical structure def: "A part of the body present only in females." [AEO:0000176, AEO:JB] xref: AEO:0000176 is_a: UBERON:0014402 ! sex-specific anatomical structure relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0014405 name: nymph stage def: "A larval stage of that is the immature stage of some invertebrates that undergoe gradual metamorphosis (hemimetabolism) before reaching its adult stage." [UBERON:cjm] synonym: "nymph" RELATED [BTO:0000954] xref: BTO:0000954 xref: Wikipedia:Nymph_(biology) is_a: UBERON:0000069 ! larval stage relationship: never_in_taxon NCBITaxon:7742 property_value: external_definition "Any of various immature insects; especially: a larva of an insect (as a grasshopper, true bug, or mayfly) with incomplete metamorphosis that differs from the imago especially in size and in its incompletely developed wings and genitalia[BTO:0000954]." xsd:string {source="BTO:0000954"} [Term] id: UBERON:0014406 name: nauplius stage def: "The free-swimming first stage of the larva of certain crustaceans, having an unsegmented body with three pairs of appendages and a single median eye. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca." [Wikipedia:Crustacean_larvae#Nauplius] synonym: "nauplius" RELATED [BTO:0000915] xref: BTO:0000915 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0018378 ! crustacean larval stage property_value: external_definition "A crustacean larva in usually the first stage after leaving the egg and with three pairs of appendages, a median eye, and little or no segmentation[BTO:0000915]." xsd:string {source="BTO:0000915"} [Term] id: UBERON:0014409 name: metacromion def: "A process projecting backward and downward from the acromion of the scapula of some mammals." [http://www.thefreedictionary.com/Metacromion] synonym: "metacromion of scapula" EXACT [] synonym: "metacromion process" EXACT [] synonym: "scapular metacromion" EXACT [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:0014410 name: fibularis quartus synonym: "fibularis quartus muscle" EXACT [] synonym: "peroneus digiti IV" RELATED [EMAPA:36260] synonym: "peroneus digiti quarti" EXACT [EMAPA:36260] synonym: "peroneus quartus" EXACT [] synonym: "peroneus quartus muscle" EXACT [] xref: EMAPA:36260 is_a: UBERON:0009132 ! peroneus property_value: taxon_notes "variant structure in human" xsd:string {source="PMID:14653594"} [Term] id: UBERON:0014411 name: greater sciatic notch def: "On the dorsal border of the wing of the ilium , at it's junction with the shaft is a cut away. This forms the Greater sciatic notch. The sciatic nerve runs over the notch in passage to the hindlimb." [MURDOCH:865] subset: pheno_slim synonym: "greater sacrosciatic notch" EXACT [] synonym: "incisura ischiadica major" EXACT OMO:0003011 [Wikipedia:Greater_sciatic_notch] xref: FMA:16902 xref: SCTID:292728005 xref: Wikipedia:Greater_sciatic_notch is_a: UBERON:0014430 ! sciatic notch property_value: external_definition "deep indentation in the posterior border of the hip bone at the point of union of the ilium and ischium[HP:0010456]." xsd:string {source="HP:0010456"} [Term] id: UBERON:0014430 name: sciatic notch def: "Either of two notches on the dorsal border of the hip bone on each side that when closed off by ligaments form the corresponding sciatic foramina." [http://www.merriam-webster.com/medical/sciatic+notch] xref: SCTID:360956007 xref: Wikipedia:Sciatic_notch is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:0014436 name: lesser sciatic notch def: "Below the ischial spine is a smaller notch, the lesser sciatic notch; it is smooth, coated in the recent state with cartilage, the surface of which presents two or three ridges corresponding to the subdivisions of the tendon of the Obturator internus, which winds over it. It is converted into a foramen, the lesser sciatic foramen, by the sacrotuberous and sacrospinous ligaments, and transmits the tendon of the Obturator internus, the nerve which supplies that muscle, and the internal pudendal vessels and nerve." [Wikipedia:Lesser_sciatic_notch] synonym: "incisura ischiadica minor" EXACT OMO:0003011 [Wikipedia:Lesser_sciatic_notch] xref: FMA:16911 xref: SCTID:292830001 xref: Wikipedia:Lesser_sciatic_notch is_a: UBERON:0014430 ! sciatic notch [Term] id: UBERON:0014437 name: iliac crest def: "Is part of the pelvis on the edge of the wing of the ilium. Round in shape, dorsal to the pubis and ischium. Acts as structrure that muscles can attach too." [MURDOCH:931] subset: pheno_slim xref: EMAPA:37602 {source="MA:th"} xref: FMA:16914 xref: MA:0003053 xref: NCIT:C103818 xref: SCTID:182034009 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:0014438 name: superior pubic ramus def: "The superior pubic ramus is a part of the pubic bone which forms a portion of the obturator foramen. It extends from the body to the median plane where it articulates with its fellow of the opposite side. It is conveniently described in two portions, viz. , a medial flattened part and a narrow lateral prismoid portion." [Wikipedia:Superior_pubic_ramus] synonym: "superior rami of the pubes" RELATED [Wikipedia:Superior_pubic_ramus] synonym: "superior ramus of pubis" EXACT [FMA:16988] synonym: "superior ramus of the pubis" RELATED [Wikipedia:Superior_pubic_ramus] xref: FMA:16988 xref: SCTID:182037002 xref: Wikipedia:Superior_pubic_ramus is_a: UBERON:0014444 ! pubic ramus [Term] id: UBERON:0014439 name: inferior pubic ramus def: "The inferior pubic ramus is thin and flattened. It passes lateralward and downward from the medial end of the superior ramus; it becomes narrower as it descends and joins with the inferior ramus of the ischium below the obturator foramen." [Wikipedia:Inferior_pubic_ramus] subset: pheno_slim synonym: "inferior rami of the pubes" RELATED [Wikipedia:Inferior_pubic_ramus] synonym: "inferior ramus of pubis" EXACT [FMA:16989] synonym: "inferior ramus of the pubis" RELATED [Wikipedia:Inferior_pubic_ramus] xref: FMA:16989 xref: SCTID:182038007 xref: Wikipedia:Inferior_pubic_ramus is_a: UBERON:0014444 ! pubic ramus [Term] id: UBERON:0014440 name: ischiopubic ramus def: "The ischiopubic ramus is a compound structure consisting of the following two structures: from the pubis, the inferior pubic ramus from the ischium, the inferior ramus of the ischium It serves as part of the origin for the Obturator internus muscle. It also marks a vertex of the anal triangle and the urogenital triangle. The fascia of Colles is attached to its margin." [Wikipedia:Ischiopubic_ramus] synonym: "conjoint ramus" EXACT [FMA:43533] synonym: "ischiopubic rami" RELATED [Wikipedia:Ischiopubic_ramus] synonym: "rami of the pubis and ischium" RELATED [Wikipedia:Ischiopubic_ramus] xref: FMA:43533 xref: Wikipedia:Ischiopubic_ramus is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone [Term] id: UBERON:0014441 name: ischial ramus synonym: "ramus of ischium" EXACT [FMA:17007] synonym: "ramus ossis ischii" EXACT [FMA:17007] synonym: "ramusi ossis ischii" EXACT [FMA:TA] xref: FMA:17007 xref: SCTID:182043000 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:0014442 name: superior ischial ramus def: "The superior ramus of the ischium (descending ramus) projects downward and backward from the body and presents for examination three surfaces: external, internal, and posterior. The external surface is quadrilateral in shape. It is bounded above by a groove which lodges the tendon of the Obturator externus; below, it is continuous with the inferior ramus; in front it is limited by the posterior margin of the obturator foramen; behind, a prominent margin separates it from the posterior surface. In front of this margin the surface gives origin to the Quadratus femoris, and anterior to this to some of the fibers of origin of the Obturator externus; the lower part of the surface gives origin to part of the Adductor magnus. The internal surface forms part of the bony wall of the lesser pelvis. In front it is limited by the posterior margin of the obturator foramen. Below, it is bounded by a sharp ridge which gives attachment to a falciform prolongation of the sacrotuberous ligament, and, more anteriorly, gives origin to the Transversus perinC&i and Ischiocavernosus. Posteriorly the ramus forms a large swelling, the tuberosity of the ischium." [Wikipedia:Superior_ramus_of_the_ischium] synonym: "superior ramus of ischium" RELATED [] xref: FMA:304318 xref: SCTID:292625002 xref: Wikipedia:Superior_ramus_of_the_ischium is_a: UBERON:0014441 ! ischial ramus [Term] id: UBERON:0014443 name: inferior ischial ramus def: "The Inferior Ramus of the ischium (ascending ramus) is the thin, flattened part of the ischium, which ascends from the superior ramus, and joins the inferior ramus of the pubisbthe junction being indicated in the adult by a raised line. The outer surface is uneven for the origin of the obturator externus and some of the fibers of the adductor magnus; its inner surface forms part of the anterior wall of the pelvis. Its medial border is thick, rough, slightly everted, forms part of the outlet of the pelvis, and presents two ridges and an intervening space. The ridges are continuous with similar ones on the inferior ramus of the pubis: to the outer is attached the deep layer of the superficial perineal fascia (fascia of Colles), and to the inner the inferior fascia of the urogenital diaphragm. If these two ridges be traced downward, they will be found to join with each other just behind the point of origin of the transversus perinC&i; here the two layers of fascia are continuous behind the posterior border of the muscle. To the intervening space, just in front of the point of junction of the ridges, the transversus perinC&i is attached, and in front of this a portion of the crus penis vel clitoridis and the ischiocavernosus. Its lateral border is thin and sharp, and forms part of the medial margin of the obturator foramen." [Wikipedia:Inferior_ramus_of_the_ischium] synonym: "inferior rami of the pubis" RELATED [Wikipedia:Inferior_ramus_of_the_ischium] synonym: "inferior ramus of ischium" RELATED [] xref: SCTID:361324004 xref: Wikipedia:Inferior_ramus_of_the_ischium is_a: UBERON:0014441 ! ischial ramus [Term] id: UBERON:0014444 name: pubic ramus subset: pheno_slim synonym: "ramus of pubis" EXACT [] xref: SCTID:182026003 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001275 ! pubis [Term] id: UBERON:0014445 name: acetabular fossa def: "The acetabular fossa is the roughened depression in the centre of the acetabulum, surrounded by the lunate acetabular surface and the acetabular notch. The acetabular fossa provides an insertion point for the teres ligaments that secure the femoral head." [MURDOCH:100] comment: It is occupied by the ligament of head of femur[WP] subset: pheno_slim synonym: "fossa acetabularis" EXACT OMO:0003011 [Wikipedia:Acetabular_fossa] synonym: "fossa acetabularis (acetabuli)" EXACT [FMA:17269] synonym: "fossa acetabuli" EXACT OMO:0003011 [Wikipedia:Acetabular_fossa] xref: FMA:17269 xref: SCTID:289666003 xref: Wikipedia:Acetabular_fossa is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0001272 ! innominate bone [Term] id: UBERON:0014446 name: acetabular notch def: "The acetabulum presents below a deep notch, the acetabular notch, which is continuous with a circular non-articular depression, the acetabular fossa, at the bottom of the cavity: this depression is perforated by numerous apertures, and lodges a mass of fat. The notch is converted into a foramen by the transverse ligament; through the foramen nutrient vessels and nerves enter the joint; the margins of the notch serve for the attachment of the ligament of the head of the femur." [Wikipedia:Acetabular_notch] xref: FMA:16944 xref: SCTID:289767000 xref: Wikipedia:Acetabular_notch is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001272 ! innominate bone [Term] id: UBERON:0014447 name: feathered facial disc def: "A collection of feathers arranged in a concave pattern surrounding the eyes in some birds, particularly owls." [Wikipedia:Facial_disc] synonym: "facial disk" EXACT [] synonym: "facial diss" EXACT [] is_a: UBERON:0011810 ! collection of feathers relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:30458 [Term] id: UBERON:0014448 name: feathered ear tuft def: "A collection of feathers found on the heads of some owls." [http://orcid.org/0000-0002-6601-2165] synonym: "ear horn" RELATED [] synonym: "ear tuft" EXACT [] is_a: UBERON:0011810 ! collection of feathers relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0014450 name: pretectal nucleus alt_id: UBERON:0002994 def: "A neural nucleus of the pretectal area (between dorsal thalamus and optic tectum) that receives afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] subset: pheno_slim synonym: "nucleus area pretectalis" RELATED OMO:0003011 [NeuroNames:468] synonym: "nucleus of pretectal area" EXACT [FMA:72401] synonym: "nucleus of the pretectal area" RELATED [NeuroNames:468] synonym: "pretectal area nucleus" EXACT [FMA:72401] synonym: "pretectal nucleus" EXACT [] xref: BAMS:PTA xref: BIRNLEX:864 xref: DHBA:12182 xref: EMAPA:37919 {source="MA:th"} xref: FMA:72401 xref: HBA:9083 xref: neuronames:468 {source="BIRNLEX:864"} xref: SCTID:416164009 xref: UMLS:C0175358 {source="BIRNLEX:864"} is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001944 ! pretectal region relationship: present_in_taxon NCBITaxon:7761 relationship: present_in_taxon NCBITaxon:9255 property_value: external_definition "Any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex" xsd:string {source="MP:0009638"} property_value: external_ontology_notes "see notes for pretectal region. Note this is midbrain in FMA, midbrain (mesencephalon) in HBA, midbrain in DHBA" xsd:string {external_ontology="FMA"} property_value: taxon_notes "in hagfishes, there are two: the pretectal nucleus and the nucleus of the posterior commissure[ISBN:0471888893]" xsd:string [Term] id: UBERON:0014451 name: tongue taste bud def: "A taste bud that is located on the tongue, situated on a gustatory papilla." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim synonym: "gustatory papilla taste bud" EXACT [] synonym: "gustatory papillae taste bud" EXACT [MP:0006260] is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0014389 ! gustatory papilla of tongue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014452 name: gustatory epithelium of tongue def: "A gustatory epithelium that is part of a tongue." [OBOL:automatic] subset: human_reference_atlas synonym: "lingual gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:4099 xref: UMLS:C1179150 {source="BIRNLEX:4099"} is_a: UBERON:0002926 ! gustatory epithelium is_a: UBERON:0003357 ! epithelium of tongue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014453 name: gustatory epithelium of palate def: "A gustatory epithelium that is part of a roof of mouth." [OBOL:automatic] synonym: "palatal gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0002926 ! gustatory epithelium relationship: part_of UBERON:0002424 ! oral epithelium relationship: part_of UBERON:0007375 ! roof of mouth [Term] id: UBERON:0014454 name: visceral abdominal adipose tissue def: "Subcutaneous adipose tissue that is located in the peritoneal cavity." [CALOHA:paula, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/259, MGI:csmith] synonym: "abdominal fat" RELATED [BTO:0004041] synonym: "intra-abdominal adipose tissue" RELATED [] synonym: "intra-abdominal fat" RELATED [BTO:0004041] synonym: "organ fat" RELATED [BTO:0004041] synonym: "visceral adipose tissue" RELATED [BTO:0004041] synonym: "visceral fat" RELATED [BTO:0004041] xref: BTO:0004041 xref: CALOHA:TS-2405 is_a: UBERON:0007808 ! adipose tissue of abdominal region property_value: external_definition "Adipose tissue located inside the peritoneal cavity, packed in between internal organs and torso. An excess of visceral fat is known as central obesity, or belly fat, the pot belly or beer belly effect, in which the abdomen protrudes excessively[BTO:0004041]." xsd:string {source="BTO:0004041"} [Term] id: UBERON:0014455 name: subcutaneous abdominal adipose tissue def: "Subcutaneous adipose tissue that is located in the abdominal region." [CALOHA:paula, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/259, MGI:csmith] synonym: "abdominal subcutaneous adipose tissue" EXACT [] synonym: "subcutaneous abdominal fat" EXACT [] synonym: "subcutaneous fat of abdominal region" EXACT [] xref: CALOHA:TS-2406 is_a: UBERON:0002190 ! subcutaneous adipose tissue is_a: UBERON:0007808 ! adipose tissue of abdominal region [Term] id: UBERON:0014456 name: extraperitoneal space def: "The extraperitoneal space is the portion of the abdomen and pelvis which does not lie within peritoneum. It includes: Retroperitoneal space Retropubic space The space in the pelvis is divided into the following components: prevesical space perivesical space perirectal space." [Wikipedia:Extraperitoneal_space] synonym: "spatium extraperitoneale" EXACT OMO:0003011 [Wikipedia:Extraperitoneal_space] xref: FMA:14730 xref: NCIT:C92208 xref: SCTID:368076004 xref: UMLS:C0230197 {source="ncithesaurus:Extraperitoneal_Space"} xref: Wikipedia:Extraperitoneal_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000916 ! abdomen property_value: has_relational_adjective "extraperitoneal" xsd:string [Term] id: UBERON:0014457 name: obsolete adult eye primordium def: "Missing definition for term UBERON:0014457. Please replace it using linked reference." [EFO:0000240] comment: obsolete as it groups developmentally very different structures subset: efo_slim synonym: "adult eye primordium early" EXACT [EFO:0000240] xref: EFO:0000240 is_obsolete: true consider: FBbt:10005249 consider: UBERON:0003071 consider: XAO:0000227 [Term] id: UBERON:0014458 name: female bulbospongiosus muscle def: "A bulbospongiosus muscle that is part of a female reproductive system." [OBOL:automatic] synonym: "bulbospongiosus of female" EXACT [] synonym: "female bulbospongiosus" EXACT [] xref: SCTID:244974000 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0011389 ! bulbospongiosus muscle relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0014459 name: temporal fenestra def: "One of two bilaterally symmetrical holes (fenestrae) in the temporal bone." [Wikipedia:Temporal_fenestra#Temporal_fenestrae] synonym: "temporal fenestrae" RELATED OMO:0003004 [] is_a: UBERON:0004705 ! fenestra relationship: never_in_taxon NCBITaxon:32525 {notes="in extant mammals the synapsis temporal fenestra is closed by the sphenoid", source="Wikipedia"} relationship: never_in_taxon NCBITaxon:8459 {source="Wikipedia"} relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0014460 name: supratemporal fenestra def: "A temporal fenestra in the upper part of the temporal bone." [Wikipedia:Skull] synonym: "supratemporal fenestrae" RELATED OMO:0003004 [] synonym: "upper temporal fenestra" EXACT [] is_a: UBERON:0014459 ! temporal fenestra [Term] id: UBERON:0014461 name: infratemporal fenestra def: "An infratemporal fenestra, also called the lateral temporal fenestra is an opening in the skull behind the orbit in some animals." [Wikipedia:Infratemporal_fenestra] synonym: "infratemporal fenestrae" RELATED OMO:0003004 [] synonym: "lateral temporal fenestra" EXACT [] synonym: "lower temporal fenestra" EXACT [] xref: Wikipedia:Infratemporal_fenestra is_a: UBERON:0014459 ! temporal fenestra [Term] id: UBERON:0014462 name: obsolete ptychocyst def: "A cnida that is glutinous and is capable of sticking to prey. Found on burrowing (tube) anemones, which help create the tube in which the animal lives." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cnida#Types_of_cnidae] comment: Will be added to GO or a cnidarian ontology synonym: "glutinant cnida" EXACT [http://orcid.org/0000-0002-6601-2165] is_obsolete: true [Term] id: UBERON:0014463 name: cardiac ganglion def: "Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery." [ISBN:0-683-40008-8, MP:0003685] subset: human_reference_atlas synonym: "cardiac ganglia" RELATED OMO:0003004 [] synonym: "cardiac ganglia set" EXACT [FMA:77582] synonym: "cardiac ganglion of Wrisberg" EXACT [] synonym: "ganglia cardiaca" EXACT [FMA:TA] synonym: "ganglion of Wrisberg" EXACT [FMA:77582] synonym: "Wrisberg ganglion" EXACT [MP:0003685] xref: EMAPA:36644 xref: FMA:77582 xref: SCTID:57098005 is_a: UBERON:0001808 ! parasympathetic ganglion relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery[http://medical-dictionary.thefreedictionary.com/cardiac+ganglion]." xsd:string {source="http://medical-dictionary.thefreedictionary.com/cardiac+ganglion"} [Term] id: UBERON:0014464 name: renal fat pad def: "Encapsulated adipose tissue associated with the kidney." [MP:0008902] subset: pheno_slim synonym: "perirenal fat pad" RELATED [MP:0008902] is_a: UBERON:0003427 ! abdominal fat pad relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0014465 name: antorbital fenestra def: "An antorbital fenestra is an opening in the skull, in front of the eye sockets. This skull formation first appeared in archosaurs during the Triassic Period. Living birds today possess antorbital fenestrae, but the feature has been lost in modern crocodilians. In some archosaur species, the opening has closed but its location is still marked by a depression, or fossa, on the surface of the skull. This is called an antorbital fossa." [Wikipedia:Antorbital_fenestra] synonym: "antorbital fenestrae" RELATED OMO:0003004 [] is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0014466 name: subarachnoid fissure xref: FMA:75136 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000315 ! subarachnoid space [Term] id: UBERON:0014468 name: ansoparamedian fissure of cerebellum def: "Fissure between cerebellar hemispheric lobules VIIBi and VIIBii." [NLXANAT:20081256] synonym: "ansoparamedian fissure" EXACT [NLXANAT:20081256] synonym: "fissura ansoparamedianis" EXACT [FMA:TA] synonym: "fissura lunogracilis" EXACT OMO:0003011 [FMA:75137, FMA:TA] synonym: "lunogracile fissure" EXACT [NLXANAT:20081256] synonym: "lunogracile fissure of cerebellum" EXACT [FMA:75137] xref: BAMS:apf xref: BAMS:apmf xref: DHBA:266441733 xref: FMA:75137 xref: HBA:9413 xref: MBA:43 xref: neuronames:2272 xref: NLXANAT:20081256 is_a: UBERON:0003980 ! cerebellum fissure [Term] id: UBERON:0014471 name: primary fissure of cerebellum def: "The monticulus of the cerebellum is divided by the primary fissure (or preclival fissure) into an anterior, raised part, the culmen or summit, and a posterior sloped part, the clivus; the quadrangular lobule is similarly divided." [Wikipedia:Primary_fissure_of_cerebellum] synonym: "fissura preclivalis" EXACT [FMA:TA] synonym: "fissura prima" EXACT OMO:0003011 [FMA:83729, FMA:TA] synonym: "fissura prima cerebelli" EXACT OMO:0003011 [FMA:83729, FMA:TA] synonym: "fissura superior anterior" EXACT OMO:0003011 [FMA:83729, FMA:TA] synonym: "preclival fissure" EXACT [FMA:83729] synonym: "preclival fissure" RELATED [Wikipedia:Primary_fissure_of_cerebellum] synonym: "primary fissure" BROAD [NLXANAT:20081253] synonym: "primary sulcus of cerebellum" EXACT [FMA:83729] xref: BAMS:pfcb xref: FMA:83729 xref: HBA:9410 xref: MBA:1103 xref: neuronames:648 xref: NLXANAT:20081253 xref: SCTID:314164007 xref: Wikipedia:Primary_fissure_of_cerebellum is_a: UBERON:0003980 ! cerebellum fissure [Term] id: UBERON:0014473 name: precentral fissure of cerebellum def: "Fissure between cerebellar lobules I and II." [NLXANAT:20081251] synonym: "fissura postlingualis cerebelli" EXACT [FMA:TA] synonym: "fissura praecentralis" EXACT OMO:0003011 [FMA:83731, FMA:TA] synonym: "fissura precentralis cerebelli" EXACT OMO:0003011 [FMA:83731, FMA:TA] synonym: "post-lingual fissure of cerebellum" EXACT [FMA:83731] synonym: "postlingual fissure" EXACT [FMA:83731] synonym: "precentral fissure" EXACT [NLXANAT:20081251] xref: BAMS:pce xref: BAMS:pcn xref: BAMS:prfcb xref: FMA:83731 xref: HBA:9407 xref: MBA:1087 xref: neuronames:651 xref: NLXANAT:20081251 xref: SCTID:18716004 is_a: UBERON:0003980 ! cerebellum fissure relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebellum property_value: editor_note "compare with precentral sulcus" xsd:string [Term] id: UBERON:0014474 name: postcentral fissure of cerebellum synonym: "fissura postcentralis cerebelli" EXACT [FMA:TA] synonym: "fissura praeculminata" EXACT OMO:0003011 [FMA:83732, FMA:TA] synonym: "post-central fissure of cerebellum" EXACT [FMA:83732] synonym: "postcentral fissure" BROAD [] synonym: "postcentral fissure-2" EXACT [FMA:83732] xref: BAMS:pofcb xref: FMA:83732 xref: neuronames:652 is_a: UBERON:0003980 ! cerebellum fissure [Term] id: UBERON:0014475 name: endostylar duct def: "A duct in ammocetes (larval lamprey) that is reputed to connect the endostylar lumen to the pharyngeal lumen. Resembles the thyroglossal duct." [https://github.com/obophenotype/uberon/issues/285, PMID:15592682] synonym: "duct of endostyle" EXACT [] is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0006870 ! endostyle [Term] id: UBERON:0014477 name: thoracic skeleton def: "Subdivision of skeletal system that consists of all skeletal elements in the thoracic region of the trunk. In most vertebrates this is the rib cage and sternum." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Rib_cage] subset: human_reference_atlas subset: pheno_slim synonym: "skeleton of thorax" EXACT [] synonym: "thoracic part of axial skeleton" EXACT [] synonym: "thoracic skeleton" EXACT [EHDAA2:0002013] xref: EHDAA2:0002013 xref: FMA:77169 xref: Wikipedia:Thoracic_skeleton is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014478 name: rib skeletal system def: "Subdivision of skeletal system that consists of all ribs and rib joints in an organism. In many vertebrates this consists of the combination of the rib cage and all rib joints, but some vertebrates have ribs outside the thoracic rib cage." [https://orcid.org/0000-0002-6601-2165] synonym: "rib series" EXACT [TAO:0002100] synonym: "rib skeleton" RELATED [] synonym: "set of all ribs" RELATED [FMA:265719] xref: FMA:265719 xref: TAO:0002100 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: never_in_taxon NCBITaxon:7778 {source="Wikipedia"} relationship: part_of UBERON:0011138 ! postcranial axial skeletal system [Term] id: UBERON:0014479 name: elephant trunk def: "An appendage formed by the fusion of the nose and upper lip." [https://github.com/obophenotype/uberon/issues/295, Wikipedia:Elephant#Trunk] synonym: "proboscis" BROAD [] synonym: "trunk" BROAD INCONSISTENT [] synonym: "trunk of elephant" EXACT [] xref: SCTID:41253007 is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0014480 name: blood feather def: "A developing feather." [Wikipedia:Pin_feather] synonym: "pin feather" RELATED [] xref: SCTID:413670006 xref: Wikipedia:Pin_feather is_a: UBERON:0000022 ! feather [Term] id: UBERON:0014481 name: sex skin def: "An area of skin adjacent to the female external genitals of various lower primates that undergo marked alteration in turgidity and often in color during estrus." [http://www.merriam-webster.com/dictionary/sex%20skin] xref: SCTID:113175000 is_a: UBERON:0000014 ! zone of skin [Term] id: UBERON:0014482 name: ischial callosity def: "An area of hardened, leathery skin on either side of the base of the tail on the rump." [http://pin.primate.wisc.edu/factsheets/glossary] is_a: UBERON:8480024 ! skin of sacral region [Term] id: UBERON:0014483 name: distal phalanx of digit 1 def: "A distal phalanx that is part of a digit 1 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit I P3" RELATED [] synonym: "distal phalanx of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal phalanx of first digit" EXACT [] synonym: "first distal phalanx" RELATED [] is_a: UBERON:0004300 ! distal phalanx relationship: part_of UBERON:0006048 ! digit 1 relationship: part_of UBERON:5106048 ! digit 1 digitopodial skeleton [Term] id: UBERON:0014484 name: distal phalanx of digit 2 def: "A distal phalanx that is part of a digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "2nd digit distal phalanx" EXACT [] synonym: "digit 2 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit II P3" RELATED [] synonym: "distal phalanx of 2nd digit" EXACT [] synonym: "distal phalanx of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal phalanx of index digit" EXACT [] synonym: "distal phalanx of second digit" EXACT [] synonym: "second digit distal phalanx" EXACT [] synonym: "second distal phalanx" EXACT [] is_a: UBERON:0004300 ! distal phalanx relationship: part_of UBERON:0006049 ! digit 2 relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton [Term] id: UBERON:0014485 name: distal phalanx of digit 3 def: "A distal phalanx that is part of a digit 3. In odd-toes ungulates (Perissodactyla e.g. horses) this is called the coffin bone. In even-toed ungulates (Artiodactyla e.g cattle) this is associated with the medial claw." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Coffin_bone, Wikipedia:Equine_forelimb_anatomy#Distal_phalanx] synonym: "3rd digit distal phalanx" EXACT [] synonym: "coffin bone" NARROW [NCBITaxon:9787] synonym: "digit 3 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit III P3" RELATED [] synonym: "distal phalanx of 3rd digit" EXACT [] synonym: "distal phalanx of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal phalanx of middle digit" EXACT [] synonym: "distal phalanx of third digit" EXACT [] synonym: "equine 3rd phalanx of digit 3" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "equine distal phalanx" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "medial claw of artiodactyl" NARROW [NCBITaxon:91561] synonym: "medial claw of ruminant hoof" NARROW [NCBITaxon:91561] synonym: "medial ungual phalanx of artiodactyl" NARROW [NCBITaxon:91561] synonym: "pedal bone" NARROW [NCBITaxon:9787] synonym: "third digit distal phalanx" EXACT [] synonym: "third distal phalanx" EXACT [] xref: SCTID:370666003 xref: SCTID:370671005 xref: SCTID:410030004 xref: Wikipedia:Coffin_bone is_a: UBERON:0004300 ! distal phalanx relationship: part_of UBERON:0006050 ! digit 3 relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton property_value: taxon_notes "the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint[Wikipedia:Coffin_bone]" xsd:string {source="Wikipedia:Coffin_bone", taxon="NCBITaxon:9788"} [Term] id: UBERON:0014486 name: distal phalanx of digit 4 def: "A distal phalanx that is part of a digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "4th digit distal phalanx" EXACT [] synonym: "digit 4 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit IV P3" RELATED [] synonym: "distal phalanx of 4th digit" EXACT [] synonym: "distal phalanx of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal phalanx of fourth digit" EXACT [] synonym: "distal phalanx of ring digit" EXACT [] synonym: "fourth digit distal phalanx" EXACT [] synonym: "fourth distal phalanx" EXACT [] synonym: "lateral claw of artiodactyl" NARROW [NCBITaxon:91561] synonym: "lateral claw of ruminant hoof" NARROW [NCBITaxon:91561] synonym: "lateral ungual phalanx of artiodactyl" NARROW [NCBITaxon:91561] xref: SCTID:370667007 xref: SCTID:370670006 is_a: UBERON:0004300 ! distal phalanx relationship: part_of UBERON:0006051 ! digit 4 relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton [Term] id: UBERON:0014487 name: distal phalanx of digit 5 def: "A distal phalanx that is part of a digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "5th digit distal phalanx" EXACT [] synonym: "digit 5 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit V P3" RELATED [] synonym: "distal phalanx of 5th digit" EXACT [] synonym: "distal phalanx of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal phalanx of fifth digit" EXACT [] synonym: "distal phalanx of little digit" EXACT [] synonym: "fifth digit distal phalanx" EXACT [] synonym: "fifth distal phalanx" EXACT [] is_a: UBERON:0004300 ! distal phalanx relationship: part_of UBERON:0006052 ! digit 5 relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton [Term] id: UBERON:0014488 name: middle phalanx of digit 2 def: "A middle phalanx that is part of a digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "2nd digit intermediate phalanx" EXACT [] synonym: "2nd digit middle phalanx" EXACT [] synonym: "2nd digit of intermediate phalanx" EXACT [] synonym: "2nd digit of middle phalanx" EXACT [] synonym: "digit 2 intermediate phalanx" EXACT [] synonym: "digit 2 middle phalanx" EXACT [] synonym: "digit II P2" RELATED [] synonym: "intermediate phalanx of 2nd digit" EXACT [] synonym: "intermediate phalanx of digit 2" EXACT [] synonym: "intermediate phalanx of second digit" EXACT [] synonym: "middle phalanx of 2nd digit" EXACT [] synonym: "middle phalanx of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "middle phalanx of index digit" EXACT [] synonym: "middle phalanx of second digit" EXACT [] synonym: "second digit intermediate phalanx" EXACT [] synonym: "second digit middle phalanx" EXACT [] synonym: "second middle phalanx" EXACT [] is_a: UBERON:0004301 ! middle phalanx relationship: part_of UBERON:0006049 ! digit 2 relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton [Term] id: UBERON:0014489 name: middle phalanx of digit 3 def: "A middle phalanx that is part of a digit 3 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "3rd digit intermediate phalanx" EXACT [] synonym: "3rd digit middle phalanx" EXACT [] synonym: "3rd digit of intermediate phalanx" EXACT [] synonym: "3rd digit of middle phalanx" EXACT [] synonym: "digit 3 intermediate phalanx" EXACT [] synonym: "digit 3 middle phalanx" EXACT [] synonym: "digit III P2" RELATED [] synonym: "intermediate phalanx of 3rd digit" EXACT [] synonym: "intermediate phalanx of digit 3" EXACT [] synonym: "intermediate phalanx of third digit" EXACT [] synonym: "middle phalanx of 3rd digit" EXACT [] synonym: "middle phalanx of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "middle phalanx of middle digit" EXACT [] synonym: "middle phalanx of third digit" EXACT [] synonym: "third digit intermediate phalanx" EXACT [] synonym: "third digit middle phalanx" EXACT [] synonym: "third middle phalanx" EXACT [] xref: SCTID:370676000 is_a: UBERON:0004301 ! middle phalanx relationship: part_of UBERON:0006050 ! digit 3 relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton [Term] id: UBERON:0014490 name: middle phalanx of digit 4 def: "A middle phalanx that is part of a digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "4th digit intermediate phalanx" EXACT [] synonym: "4th digit middle phalanx" EXACT [] synonym: "4th digit of intermediate phalanx" EXACT [] synonym: "4th digit of middle phalanx" EXACT [] synonym: "digit 4 intermediate phalanx" EXACT [] synonym: "digit 4 middle phalanx" EXACT [] synonym: "digit IV P2" RELATED [] synonym: "fourth digit intermediate phalanx" EXACT [] synonym: "fourth digit middle phalanx" EXACT [] synonym: "fourth middle phalanx" EXACT [] synonym: "intermediate phalanx of 4th digit" EXACT [] synonym: "intermediate phalanx of digit 4" EXACT [] synonym: "intermediate phalanx of fourth digit" EXACT [] synonym: "middle phalanx of 4th digit" EXACT [] synonym: "middle phalanx of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "middle phalanx of fourth digit" EXACT [] synonym: "middle phalanx of ring digit" EXACT [] xref: SCTID:370675001 is_a: UBERON:0004301 ! middle phalanx relationship: part_of UBERON:0006051 ! digit 4 relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton [Term] id: UBERON:0014491 name: middle phalanx of digit 5 def: "A middle phalanx that is part of a digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "5th digit intermediate phalanx" EXACT [] synonym: "5th digit middle phalanx" EXACT [] synonym: "5th digit of intermediate phalanx" EXACT [] synonym: "5th digit of middle phalanx" EXACT [] synonym: "digit 5 intermediate phalanx" EXACT [] synonym: "digit 5 middle phalanx" EXACT [] synonym: "digit V P2" RELATED [] synonym: "fifth digit intermediate phalanx" EXACT [] synonym: "fifth digit middle phalanx" EXACT [] synonym: "fifth middle phalanx" EXACT [] synonym: "intermediate phalanx of 5th digit" EXACT [] synonym: "intermediate phalanx of digit 5" EXACT [] synonym: "intermediate phalanx of fifth digit" EXACT [] synonym: "middle phalanx of 5th digit" EXACT [] synonym: "middle phalanx of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "middle phalanx of fifth digit" EXACT [] synonym: "middle phalanx of little digit" EXACT [] is_a: UBERON:0004301 ! middle phalanx relationship: part_of UBERON:0006052 ! digit 5 relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton [Term] id: UBERON:0014501 name: proximal phalanx of digit 1 def: "A proximal phalanx that is part of a autopod digit 1 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "digit I P1" EXACT [] synonym: "digit I-1" EXACT [PHENOSCAPE:wd] synonym: "first proximal phalanx of autopod" EXACT [] synonym: "proximal phalanx of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "proximal phalanx of first digit of autopod" EXACT [] is_a: UBERON:0004302 ! proximal phalanx relationship: part_of UBERON:0006048 ! digit 1 relationship: part_of UBERON:5106048 ! digit 1 digitopodial skeleton [Term] id: UBERON:0014502 name: proximal phalanx of digit 2 def: "A proximal phalanx that is part of a autopod digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "2nd digit of autopod proximal phalanx" EXACT [] synonym: "2nd digit proximal phalanx" EXACT [] synonym: "autopod digit 2 proximal phalanx" EXACT [] synonym: "digit II-1" EXACT [PHENOSCAPE:wd] synonym: "digit IU P1" EXACT [] synonym: "proximal phalanx of 2nd digit" EXACT [] synonym: "proximal phalanx of 2nd digit of autopod" EXACT [] synonym: "proximal phalanx of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "proximal phalanx of index digit" EXACT [] synonym: "proximal phalanx of second digit" EXACT [] synonym: "proximal phalanx of second digit of autopod" EXACT [] synonym: "second digit proximal phalanx" EXACT [] synonym: "second proximal phalanx of autopod" EXACT [] is_a: UBERON:0004302 ! proximal phalanx relationship: part_of UBERON:0006049 ! digit 2 relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton [Term] id: UBERON:0014503 name: proximal phalanx of digit 3 def: "A proximal phalanx that is part of a autopod digit 3 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "3rd digit of autopod proximal phalanx" EXACT [] synonym: "3rd digit proximal phalanx" EXACT [] synonym: "autopod digit 3 proximal phalanx" EXACT [] synonym: "digit III P1" EXACT [] synonym: "digit III-1" EXACT [PHENOSCAPE:wd] synonym: "proximal phalanx of 3rd digit" EXACT [] synonym: "proximal phalanx of 3rd digit of autopod" EXACT [] synonym: "proximal phalanx of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "proximal phalanx of middle digit" EXACT [] synonym: "proximal phalanx of third digit" EXACT [] synonym: "proximal phalanx of third digit of autopod" EXACT [] synonym: "third digit proximal phalanx" EXACT [] synonym: "third proximal phalanx of autopod" EXACT [] xref: SCTID:370732000 is_a: UBERON:0004302 ! proximal phalanx relationship: part_of UBERON:0006050 ! digit 3 relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton [Term] id: UBERON:0014504 name: proximal phalanx of digit 4 def: "A proximal phalanx that is part of a autopod digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "4th digit of autopod proximal phalanx" EXACT [] synonym: "4th digit proximal phalanx" EXACT [] synonym: "autopod digit 4 proximal phalanx" EXACT [] synonym: "digit IV P1" EXACT [] synonym: "digit IV-1" EXACT [PHENOSCAPE:wd] synonym: "fourth digit proximal phalanx" EXACT [] synonym: "fourth proximal phalanx of autopod" EXACT [] synonym: "proximal phalanx of 4th digit" EXACT [] synonym: "proximal phalanx of 4th digit of autopod" EXACT [] synonym: "proximal phalanx of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "proximal phalanx of fourth digit" EXACT [] synonym: "proximal phalanx of fourth digit of autopod" EXACT [] synonym: "proximal phalanx of ring digit" EXACT [] is_a: UBERON:0004302 ! proximal phalanx relationship: part_of UBERON:0006051 ! digit 4 relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton [Term] id: UBERON:0014505 name: proximal phalanx of digit 5 def: "A proximal phalanx that is part of a autopod digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] synonym: "5th digit of autopod proximal phalanx" EXACT [] synonym: "5th digit proximal phalanx" EXACT [] synonym: "autopod digit 5 proximal phalanx" EXACT [] synonym: "digit V P1" EXACT [] synonym: "digit V-1" EXACT [PHENOSCAPE:wd] synonym: "fifth digit proximal phalanx" EXACT [] synonym: "fifth proximal phalanx of autopod" EXACT [] synonym: "proximal phalanx of 5th digit" EXACT [] synonym: "proximal phalanx of 5th digit of autopod" EXACT [] synonym: "proximal phalanx of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "proximal phalanx of fifth digit" EXACT [] synonym: "proximal phalanx of fifth digit of autopod" EXACT [] synonym: "proximal phalanx of little digit" EXACT [] is_a: UBERON:0004302 ! proximal phalanx relationship: part_of UBERON:0006052 ! digit 5 relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton [Term] id: UBERON:0014506 name: distal interphalangeal joint of digit 3 def: "A distal inter-phalangeal joint that is part of the 3rd digit." [http://orcid.org/0000-0002-6601-2165] synonym: "coffin joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "distal interphalangeal joint 3" RELATED [] synonym: "distal interphalangeal joint of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "equine distal interphalangeal joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "equine second interphalangeal joint of limb digit III" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] xref: NCIT:C102292 xref: SCTID:196392002 xref: SCTID:370892008 is_a: UBERON:0009768 ! distal interphalangeal joint relationship: part_of UBERON:0006050 ! digit 3 property_value: taxon_notes "In Equidae, this is known as the coffin joint, and is the articulation between the short pastern bone (P2) and the coffin bone (P3 / distal phalanx)" xsd:string [Term] id: UBERON:0014507 name: distal interphalangeal joint of pedal digit 3 def: "A distal inter-phalangeal joint that is part of the 3rd pedal digit." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "distal interphalangeal joint of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of third digit of foot" EXACT [FMA:35375] synonym: "distal interphalangeal joint of third toe" EXACT [FMA:35375] synonym: "equine distal interphalangeal joint of hindlimb" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "hindlimb coffin joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] xref: FMA:35375 xref: SCTID:361880001 is_a: UBERON:0007726 ! interphalangeal joint of pedal digit 3 is_a: UBERON:0014506 ! distal interphalangeal joint of digit 3 [Term] id: UBERON:0014508 name: distal interphalangeal joint of manual digit 3 def: "A distal inter-phalangeal joint that is part of the 3rd manual digit." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "distal interphalangeal joint of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of middle finger" EXACT [FMA:35337] synonym: "equine distal interphalangeal joint of forelimb" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "equine second interphalangeal joint of forelimb digit III" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "forelimb coffin joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] xref: FMA:35337 xref: SCTID:361854002 xref: SCTID:370683007 is_a: UBERON:0007730 ! interphalangeal joint of manual digit 3 is_a: UBERON:0014506 ! distal interphalangeal joint of digit 3 [Term] id: UBERON:0014509 name: distal sesamoid impar ligament def: "A short wide fibrous structure that attaches proximally to the navicular (distal sesamoid) and distally to the palmar margin of the flexor surface of the distal phalanx." [http://orcid.org/0000-0002-6601-2165] synonym: "distal sesamoidean impar ligament" EXACT [] synonym: "DSIL" EXACT OMO:0003000 [] synonym: "impar ligament of distal equine limb" EXACT [] xref: SCTID:370741005 is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0006050 ! digit 3 [Term] id: UBERON:0014510 name: lamina of omasum def: "A muscular sheet of the omasum wall consisting of two lateral layers and an intermediate layer of smooth muscle covered with non-glandular stratified squamous epithelium." [http://orcid.org/0000-0002-6601-2165, PMID:7978351] synonym: "omasal lamina" EXACT [] synonym: "omasal laminae" EXACT OMO:0003004 [] xref: SCTID:24667000 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0007362 ! omasum [Term] id: UBERON:0014521 name: anterodorsal nucleus of medial geniculate body synonym: "ADMG" BROAD OMO:0003000 [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource] synonym: "anterodorsal nucleus of medial geniculate complex" EXACT [BIRNLEX:1600] synonym: "anterodorsal nucleus of the medial geniculate body" RELATED [NeuroNames:852] synonym: "nucleus corporis geniculati medialis, pars anterodorsalis" RELATED [BIRNLEX:1600] xref: BAMS:MGad xref: BIRNLEX:1600 xref: HBA:4446 xref: neuronames:852 {source="BIRNLEX:1600"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body [Term] id: UBERON:0014522 name: dorsolateral oculomotor nucleus synonym: "dorsolateral nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus dorsalis nervi oculomotorii" EXACT OMO:0003011 [] synonym: "oculomotor nerve dorsolateral nucleus" EXACT [] xref: SCTID:369237002 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 ! oculomotor nuclear complex [Term] id: UBERON:0014523 name: oculomotor division of oculomotor nuclear complex def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements." [ISBN:0471888893] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001715 ! oculomotor nuclear complex relationship: present_in_taxon NCBITaxon:70846 [Term] id: UBERON:0014524 name: electromotor division of oculomotor nuclear complex def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which has axons terminating in the electric organs." [ISBN:0471888893] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001715 ! oculomotor nuclear complex relationship: present_in_taxon NCBITaxon:70846 [Term] id: UBERON:0014525 name: limb of internal capsule of telencephalon synonym: "internal capsule subdivision" EXACT [FMA:61951] synonym: "limb of internal capsule" EXACT [] synonym: "subdivision of internal capsule" EXACT [FMA:61951] xref: FMA:61951 xref: SCTID:119245007 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0001887 ! internal capsule of telencephalon [Term] id: UBERON:0014526 name: anterior limb of internal capsule def: "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus." [NLX:144257] synonym: "anterior internal capsule" RELATED [ISBN:0123813611] synonym: "anterior limb" RELATED [Wikipedia:Anterior_limb_of_internal_capsule] synonym: "capsula interna, pars anterior" EXACT OMO:0003011 [FMA:61952, FMA:TA] synonym: "crus anterius capsulae internae" EXACT OMO:0003011 [FMA:61952, FMA:TA] xref: BAMS:aic xref: DHBA:10582 xref: FMA:61952 xref: neuronames:199 xref: NLX:144257 xref: SCTID:279295005 xref: Wikipedia:Anterior_limb_of_internal_capsule is_a: UBERON:0014525 {source="FMA"} ! limb of internal capsule of telencephalon property_value: external_definition "The anterior limb of internal capsule (or frontal part) contains: (1) fibers running from the thalamus to the frontal lobe; (2) fibers connecting the lentiform and caudate nuclei; (3) fibers connecting the cortex with the corpus striatum; and (4) fibers passing from the frontal lobe through the medial fifth of the base of the cerebral peduncle to the nuclei pontis[Wikipedia:Anterior_limb_of_internal_capsule]." xsd:string {source="Wikipedia:Anterior_limb_of_internal_capsule"} property_value: taxon_notes "the streaming fibers of the anterior internal capsule separate the caudate nucleus and putamen in the human brain (in the mouse brain the caudoputamen is continuous)[ISBN:0123813611]" xsd:string [Term] id: UBERON:0014527 name: posterior limb of internal capsule def: "Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM)." [NLX:144258] synonym: "capsula interna, pars posterior" EXACT OMO:0003011 [FMA:61954, FMA:TA] synonym: "crus posterius capsulae internae" EXACT OMO:0003011 [FMA:61954, FMA:TA] synonym: "posterior internal capsule" RELATED [] synonym: "posterior limb" RELATED [Wikipedia:Posterior_limb_of_internal_capsule] synonym: "posterior limb of the internal capsule" RELATED [BAMS:pic] xref: BAMS:pic xref: DHBA:10584 xref: FMA:61954 xref: neuronames:201 xref: NLX:144258 xref: SCTID:279296006 xref: Wikipedia:Posterior_limb_of_internal_capsule is_a: UBERON:0014525 {source="FMA"} ! limb of internal capsule of telencephalon [Term] id: UBERON:0014528 name: extreme capsule def: "Thin band of fibers separating the claustrum from the insular cortex." [NLXANAT:1010014] synonym: "band of Baillarger" RELATED [Wikipedia:Extreme_capsule] synonym: "capsula extrema" RELATED [Wikipedia:Extreme_capsule] xref: BAMS:ex xref: BAMS:exc xref: DHBA:10574 xref: FMA:61960 xref: HBA:9246 xref: neuronames:254 xref: NLXANAT:1010014 xref: SCTID:279301006 xref: Wikipedia:Extreme_capsule is_a: UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: external_definition "Extreme capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The extreme capsule is a sheet-like fiber bundle located lateral to the clausturm and medial to the insula which projects dorsally to the white matter underlying the cerebral cortex[FMA:61960]." xsd:string {source="FMA:61960"} property_value: external_definition "The extreme capsule is a long association fiber pathway of white matter in the brain that provides bidirectional communication between such areas as the claustrum and the insular cortex, and the inferior frontal gyrus and the middle-posterior portion of the superior temporal gyrus. Its fibers are near to but can be distinguished by MRI tractography from adjacent fiber bundles such as the uncinate fasciculus, the external capsule, the arcuate fascicle, and the medial, inferior and superior longitudinal fascicles. Given its bidirectional connection between the Broca's and Werniche's speech areas it could have a role in language[Wikipedia:Extreme_capsule, Wikipedia:Extreme_capsule]." xsd:string {source="Wikipedia:Extreme_capsule, Wikipedia:Extreme_capsule"} property_value: external_definition "Thin band of fibers separating the claustrum from the insular cortex" xsd:string {source="NLXANAT:1010014"} [Term] id: UBERON:0014529 name: lenticular fasciculus def: "The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus." [Wikipedia:Lenticular_fasciculus] synonym: "dorsal division of ansa lenticularis" EXACT [FMA:61976] synonym: "fasciculus lenticularis" EXACT [FMA:TA] synonym: "fasciculus lenticularis" RELATED OMO:0003011 [Wikipedia:Lenticular_fasciculus] synonym: "fasciculus lenticularis [h2]" EXACT [FMA:TA] synonym: "field H2" RELATED [NLXANAT:1010015] synonym: "field H2 of Forel" RELATED [NLXANAT:1010015] synonym: "Forel's field H2" RELATED [NLXANAT:1010015] synonym: "forel's field h2" EXACT [FMA:62067] synonym: "lenticular fasciculus" EXACT [FMA:61976, NLXANAT:1010015] synonym: "lenticular fasciculus [h2]" EXACT [FMA:62067] synonym: "lenticular fasciculus of diencephalon" EXACT [FMA:62067] synonym: "lenticular fasciculus of telencephalon" EXACT [FMA:61976] synonym: "tegmental area h2" EXACT [FMA:62067] xref: BAMS:lenf_(H2) xref: DHBA:10585 xref: FMA:61976 xref: FMA:62067 xref: HBA:265505158 xref: neuronames:3064 xref: NLXANAT:1010015 xref: SCTID:5677006 xref: Wikipedia:Lenticular_fasciculus is_a: UBERON:0022254 ! ventral thalamic fasciculus property_value: external_ontology_notes "FMA appears to divide this into diencephalon and telencephalon parts" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0014530 name: white matter lamina of neuraxis synonym: "lamina of neuraxis" BROAD [FMA:83856] synonym: "neuraxis lamina" BROAD [FMA:83856] xref: FMA:83856 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0014531 name: white matter lamina of diencephalon synonym: "diencephalon lamina" BROAD [FMA:62449] synonym: "lamina of diencephalon" BROAD [FMA:62449] xref: FMA:62449 is_a: UBERON:0014530 ! white matter lamina of neuraxis relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0014532 name: white matter lamina of cerebral hemisphere synonym: "cerebral hemisphere lamina" BROAD [FMA:67951] synonym: "lamina of cerebral hemisphere" BROAD [FMA:67951] xref: FMA:67951 is_a: UBERON:0014530 ! white matter lamina of neuraxis relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0014533 name: medullary lamina of thalamus def: "Medullary laminae of thalamus are layers of myelinated fibres that appear on cross sections of the thalamus. They also are commonly referred to as laminae medullares thalami or medullary layers of thalamus. The specific layers are: Lamina medullaris lateralis (external medullary lamina) - separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus; Lamina medullaris medialis (internal medullary lamina) - positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral)." [Wikipedia:Medullary_laminae_of_thalamus] synonym: "external medullary lamina" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "internal medullary lamina" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "laminae medullares thalami" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "medullary layer of thalamus" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "medullary layers of thalamus" RELATED [Wikipedia:Medullary_laminae_of_thalamus] xref: BAMS:Lam.med.thal xref: Wikipedia:Medullary_laminae_of_thalamus is_a: UBERON:0014531 ! white matter lamina of diencephalon relationship: part_of UBERON:0010225 ! thalamic complex [Term] id: UBERON:0014534 name: external medullary lamina of thalamus def: "A medullary lamina that separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus." [Wikipedia:Medullary_laminae_of_thalamus] synonym: "external medullary lamina" EXACT [FMA:62078] synonym: "external medullary lamina of the thalamus" RELATED [BAMS:em, BAMS:eml] synonym: "lamella medullaris externa" EXACT OMO:0003011 [FMA:62078, FMA:TA] synonym: "lamina medullaris externa" EXACT OMO:0003011 [FMA:62078, FMA:TA] synonym: "lamina medullaris externa thalami" EXACT OMO:0003011 [FMA:62078, FMA:TA] synonym: "lamina medullaris lateralis" BROAD OMO:0003011 [] synonym: "lamina medullaris lateralis thalami" EXACT OMO:0003011 [FMA:TA] synonym: "lamina medullaris thalami externa" EXACT OMO:0003011 [FMA:62078, FMA:TA] xref: BAMS:em xref: BAMS:eml xref: DHBA:12038 xref: FMA:62078 xref: HBA:265505098 xref: MBA:1092 xref: neuronames:367 xref: SCTID:369179004 is_a: UBERON:0014533 ! medullary lamina of thalamus [Term] id: UBERON:0014537 name: periamygdaloid cortex def: "Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division." [NLX:144210] synonym: "periamygdaloid area" RELATED [NLX:144210] synonym: "periamygdaloid cortex" EXACT [NLX:144210] xref: BAMS:PAC xref: MESH:D066277 xref: NLX:144210 xref: Wikipedia:Periamygdaloid_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex [Term] id: UBERON:0014538 name: subdivision of spinal cord central canal def: "A subdivision of the central canal of the spinal cord along its anterior-posterior axis. This is typically subdivided into cervical, thoracic, lumbar and sacral segments." [http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "regional part of spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:717] xref: BIRNLEX:717 is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0002291 ! central canal of spinal cord [Term] id: UBERON:0014539 name: precommissural fornix of forebrain def: "Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei." [BIRNLEX:1033, https://github.com/obophenotype/uberon/issues/1277] synonym: "fornix precommissuralis" EXACT OMO:0003011 [FMA:61967, FMA:TA] synonym: "precommissural fornix" EXACT [BIRNLEX:1033] xref: BAMS:fpr xref: BAMS:fxpr xref: BAMS:pcf xref: BAMS:pcfx xref: BIRNLEX:1033 xref: FMA:61967 xref: neuronames:270 xref: UMLS:C0175237 {source="BIRNLEX:1033"} is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0000052 ! fornix of brain [Term] id: UBERON:0014540 name: white matter lamina of cerebellum def: "The white laminae of cerebellum is subdivision of the cerebellar cortex comprised of myelinated axons lying deep to the granule cell layer of the cerebellar cortex." [http://neurolex.org/wiki/Category\:White_laminae_of_cerebellum] synonym: "isthmus cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cingulatus" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus of gyrus fornicatus" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus of the cingulate gyrus" RELATED [NeuroNames:163] synonym: "isthmus-2" RELATED OMO:0003011 [NeuroNames:163] synonym: "lamina alba of cerebellar cortex" EXACT [] synonym: "laminae albae of cerebellar cortex" EXACT [] synonym: "laminae albae of cerebellar cortex" RELATED OMO:0003004 [BIRNLEX:1105] synonym: "white lamina of cerebellum" EXACT [] synonym: "white laminae of cerebellum" EXACT OMO:0003004 [BIRNLEX:1105] xref: BIRNLEX:1105 xref: neuronames:163 {source="BIRNLEX:1105"} xref: SCTID:362413004 xref: UMLS:C0228472 {source="BIRNLEX:1105"} is_a: UBERON:0014530 ! white matter lamina of neuraxis relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0014541 name: thoracic division of spinal cord central canal def: "Part of spinal cord central canal contained in the thoracic spinal cord. It is continuous rostrally with the cervical spinal cord central canal and caudally with the lumbar spinal cord central canal." [BIRNLEX:1395] subset: human_reference_atlas synonym: "thoracic spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1395] xref: BIRNLEX:1395 xref: FMA:321588 xref: SCTID:71118002 xref: UMLS:C0228637 {source="BIRNLEX:1395"} is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014542 name: cervical division of cord spinal central canal def: "Part of central canal contained within the cervical spinal cord. It is continuous caudally with the thoracic spinal cord central canal and rostrally with the fourth ventricle of the brain via the obex." [BIRNLEX:1511] synonym: "cervical spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1511] xref: BIRNLEX:1511 xref: FMA:321590 xref: SCTID:280403009 xref: UMLS:C0228620 {source="BIRNLEX:1511"} is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal [Term] id: UBERON:0014543 name: lumbar division of spinal cord central canal def: "Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord." [BIRNLEX:1604] subset: human_reference_atlas synonym: "lumbar spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1604] xref: BIRNLEX:1604 xref: FMA:321589 xref: SCTID:280406001 xref: UMLS:C0228644 {source="BIRNLEX:1604"} is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014544 name: frontomarginal sulcus def: "A superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN)." [BIRNLEX:4000] synonym: "FMS" BROAD OMO:0003000 [BIRNLEX:4000, NIFSTD:SumsDB_abbrevSource] synonym: "fronto marginal sulcus" RELATED [BAMS:frs] synonym: "frontomarginal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4000] synonym: "sulcus fronto-marginalis" RELATED OMO:0003011 [NeuroNames:1614] synonym: "sulcus frontomarginalis" RELATED [BIRNLEX:4000] xref: BAMS:frs xref: BIRNLEX:4000 xref: DHBA:146034792 xref: HBA:9363 xref: neuronames:1614 {source="BIRNLEX:4000"} xref: UMLS:C0262269 {source="BIRNLEX:4000"} is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0014547 name: sacral division of spinal cord central canal def: "Part of spinal cord central canal contained in the sacral spinal cord. It is continuous rostrally with the spinal cord central canal of the lumbar cord." [NLXANAT:1010008] subset: human_reference_atlas synonym: "lumbosacral spinal cord central canal" RELATED [] synonym: "sacral spinal cord central canal" EXACT HUMAN_PREFERRED [NLXANAT:1010008] xref: FMA:321696 xref: NLXANAT:1010008 xref: SCTID:362450003 is_a: UBERON:0014538 ! subdivision of spinal cord central canal relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014548 name: pyramidal layer of CA1 def: "CA1 part of stratum pyramidale hippocampi." [BIRNLEX:4110] synonym: "CA1 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4110] synonym: "CA1 pyramidal cell layer" RELATED [BIRNLEX:4110] synonym: "CA1 stratum pyramidale" RELATED [BIRNLEX:4110] synonym: "CA1 stratum pyramidale hippocampi" EXACT [BIRNLEX:4110] synonym: "CA1 stratum pyramidale hippocampi" RELATED [BIRNLEX:4110] synonym: "field CA1, pyramidal layer" EXACT [ABA:CA1sp] synonym: "stratum pyramidale of CA1" EXACT [PBA:10060] synonym: "stratum pyramidale of the CA1 field" EXACT [NeuroNames:2940] xref: BIRNLEX:4110 xref: DMBA:16133 xref: EMAPA:35196 xref: FMA:277868 xref: MA:0003186 xref: MBA:407 xref: neuronames:2940 xref: PBA:10060 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer [Term] id: UBERON:0014549 name: pyramidal layer of CA2 def: "Part of pyramidal cell layer in area CA2, lying superficial to the CA2 stratum oriens, and deep to the stratum radiatum of CA2, continuous with the pyramidal cell layers of CA1 and CA3." [BIRNLEX:4111] synonym: "CA2 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4111] synonym: "CA2 stratum pyramidale hippocampi" EXACT [BIRNLEX:4111] synonym: "field CA2, pyramidal layer" EXACT [ABA:CA2sp] synonym: "stratum pyramidale of CA2" EXACT [PBA:10065] synonym: "stratum pyramidale of the CA2 field" EXACT [NeuroNames:2945] xref: BIRNLEX:4111 xref: EMAPA:36480 xref: FMA:277870 xref: MBA:446 xref: neuronames:2945 xref: PBA:10065 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer [Term] id: UBERON:0014550 name: pyramidal layer of CA3 def: "A layer of hippocampal field that is part of a hippocampus pyramidal layer and is part of a CA3 field of hippocampus." [OBOL:automatic] synonym: "CA3 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4112] synonym: "CA3 stratum pyramidale hippocampi" EXACT [BIRNLEX:4112] synonym: "field CA3, pyramidal layer" EXACT [ABA:CA3sp] synonym: "stratum pyramidale of CA3" EXACT [PBA:10070] synonym: "stratum pyramidale of the CA3 field" EXACT [NeuroNames:2950] xref: BIRNLEX:4112 xref: EMAPA:36448 xref: FMA:277872 xref: MBA:495 xref: neuronames:2950 xref: PBA:10070 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer [Term] id: UBERON:0014551 name: CA2 stratum oriens def: "Part of stratum oriens lying in area CA2 deep to the CA2 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus[Modified from NIFSTD by CJM]." [BIRNLEX:4115, UBERON:cjm] synonym: "CA2 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4115] synonym: "CA2 stratum oriens" EXACT [BIRNLEX:4115] synonym: "oriens layer of CA2 field" EXACT [FMA:277858] synonym: "stratum oriens of the CA2 field" EXACT [NeuroNames:2944] xref: BAMS:so xref: BIRNLEX:4115 xref: DMBA:16138 xref: FMA:277858 xref: MBA:438 xref: neuronames:2944 xref: PBA:10064 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens [Term] id: UBERON:0014552 name: CA1 stratum oriens def: "Part of stratum oriens lying in area CA1, superficial to the alveus of CA1 and deep to the pyramidal cell layer of CA1. It is continuous with the stratum oriens of CA2 and bounded by the subiculum." [BIRNLEX:4116] synonym: "CA1 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4116] synonym: "CA1 stratum oriens" EXACT [BIRNLEX:4116] synonym: "oriens layer of CA1 field" EXACT [FMA:277856] synonym: "stratum oriens of the CA1 field" EXACT [NeuroNames:2939] xref: BAMS:so xref: BIRNLEX:4116 xref: DMBA:16132 xref: FMA:277856 xref: MBA:399 xref: neuronames:2939 xref: PBA:10059 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens [Term] id: UBERON:0014553 name: CA3 stratum oriens def: "Part of stratum oriens lying in area CA3 deep to the CA3 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus." [BIRNLEX:4117] synonym: "CA3 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4117] synonym: "CA3 stratum oriens" EXACT [BIRNLEX:4117] synonym: "oriens layer of CA3 field" EXACT [FMA:277860] synonym: "stratum oriens of the CA3 field" EXACT [NeuroNames:2949] xref: BAMS:so xref: BIRNLEX:4117 xref: DMBA:16142 xref: FMA:277860 xref: MBA:486 xref: neuronames:2949 xref: PBA:10069 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens [Term] id: UBERON:0014554 name: CA1 stratum radiatum def: "Part of stratum radiatum lying in area CA1, superficial to the CA1 pyramidal cell layer and deep to the CA1 stratum lucidum-moleculare, continuous with the stratum radiatum of CA2 and bounded by the subiculum. It contains the Schaffer collateral projection from CA3." [BIRNLEX:4119] synonym: "CA1 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4119] synonym: "CA1 stratum radiatum" EXACT [BIRNLEX:4119] synonym: "radiate layer of CA1 field" EXACT [FMA:277862] synonym: "stratum radiatum of the CA1 field" EXACT [NeuroNames:2941] xref: BAMS:sr xref: BIRNLEX:4119 xref: DMBA:16134 xref: FMA:277862 xref: MBA:415 xref: neuronames:2941 xref: PBA:10061 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum [Term] id: UBERON:0014555 name: CA2 stratum radiatum def: "Part of stratum radiatum in area CA2, lying superficial to the pyramidal cell layer and deep to CA2 stratum lacunosum-moleculare, continuous with the stratum radiatum of CA1 and CA3." [BIRNLEX:4120] synonym: "CA2 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4120] synonym: "CA2 stratum radiatum" EXACT [BIRNLEX:4120] synonym: "radiate layer of CA2 field" EXACT [FMA:277864] synonym: "stratum radiatum of the CA2 field" EXACT [NeuroNames:2946] xref: BAMS:sr xref: BIRNLEX:4120 xref: DMBA:16140 xref: FMA:277864 xref: MBA:454 xref: neuronames:2946 xref: PBA:10066 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum [Term] id: UBERON:0014556 name: CA3 stratum radiatum def: "Part of stratum radiatum in area CA3, lying superficial to the stratum lucidum and deep to CA3 stratum lacunosum-moleculare." [BIRNLEX:4121] synonym: "CA3 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4121] synonym: "CA3 stratum radiatum" EXACT [BIRNLEX:4121] synonym: "radiate layer of CA3 field" EXACT [FMA:277866] synonym: "stratum radiatum of the CA3 field" EXACT [NeuroNames:2952] xref: BAMS:sr xref: BIRNLEX:4121 xref: DMBA:16145 xref: FMA:277866 xref: MBA:504 xref: neuronames:2952 xref: PBA:10072 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum [Term] id: UBERON:0014557 name: CA1 stratum lacunosum moleculare def: "Part of stratum lacunosum-moleculare lying in area CA1, superficial to CA1 stratum radiatum and bounded by the pial surface, continuous with stratum lacunosum-moleculare of CA2 and the subiculum stratum moleculare." [BIRNLEX:4123] synonym: "CA1 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4123] synonym: "CA1 stratum lacunosum moleculare" EXACT [BIRNLEX:4123] synonym: "lacunar-molecular layer of CA1 field" EXACT [FMA:277850] synonym: "stratum lacunosum moleculare of the CA1 field" EXACT [NeuroNames:2942] xref: BAMS:slm xref: BIRNLEX:4123 xref: DMBA:16135 xref: FMA:277850 xref: MBA:391 xref: neuronames:2942 xref: PBA:10062 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare [Term] id: UBERON:0014558 name: CA2 stratum lacunosum moleculare def: "Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1." [BIRNLEX:4124] synonym: "CA2 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4124] synonym: "CA2 stratum lacunosum moleculare" EXACT [BIRNLEX:4124] synonym: "lacunar-molecular layer of CA2 field" EXACT [FMA:277852] synonym: "stratum lacunosum moleculare of the CA2 field" EXACT [NeuroNames:2947] xref: BAMS:slm xref: BIRNLEX:4124 xref: DMBA:16137 xref: FMA:277852 xref: MBA:431 xref: neuronames:2947 xref: PBA:10067 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare [Term] id: UBERON:0014559 name: CA3 stratum lacunosum moleculare def: "Part of stratum lacunosum-moleculare in area CA3. It is bounded by the stratum lacunosum-moleculare of CA2 and CA1. It is bounded superficially by the pial surface and deep by the CA3 stratum radiatum. It is continuous with the stratum lacunosum-moleculare of CA2." [BIRNLEX:4125] synonym: "CA3 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4125] synonym: "CA3 stratum lacunosum moleculare" EXACT [BIRNLEX:4125] synonym: "lacunar-molecular layer of CA3 field" EXACT [FMA:277854] synonym: "stratum lacunosum moleculare of the CA3 field" EXACT [NeuroNames:2953] xref: BAMS:slm xref: BIRNLEX:4125 xref: DMBA:16146 xref: FMA:277854 xref: MBA:471 xref: neuronames:2953 xref: PBA:10073 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare [Term] id: UBERON:0014560 name: CA3 stratum lucidum def: "A layer of hippocampal field that is part of a CA3 field of hippocampus and is part of a hippocampus stratum lucidum." [OBOL:automatic] synonym: "CA3 stratum lucidum" EXACT [NLXANAT:1005040] synonym: "stratum lucidum of the CA3 field" EXACT [NeuroNames:2951] xref: BAMS:slu xref: DMBA:16144 xref: MBA:479 xref: neuronames:2951 xref: NLXANAT:1005040 xref: PBA:10071 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0003883 ! CA3 field of hippocampus relationship: part_of UBERON:0007637 ! hippocampus stratum lucidum [Term] id: UBERON:0014567 name: layer of hippocampal field def: "A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1)." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/297] subset: non_informative synonym: "hippocampal field layer" EXACT [] is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0014568 name: dorsal tegmental nucleus pars dorsalis def: "Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations." [NLXANAT:20090407] synonym: "dorsal tegmental nucleus of Gudden pars dorsalis" RELATED [NLXANAT:20090407] synonym: "dorsal tegmental nucleus pars dorsalis" EXACT [NLXANAT:20090407] xref: NLXANAT:20090407 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002143 {source="NIFSTD"} ! dorsal tegmental nucleus property_value: taxon_notes "According to Hayakawa and Zuo (1983), the TDD cannot be clearly identified in the tree shrew or in human" xsd:string [Term] id: UBERON:0014569 name: dorsal tegmental nucleus pars ventralis def: "Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains." [NLXANAT:20090408] synonym: "dorsal tegmental nucleus of Gudden pars ventralis" RELATED [NLXANAT:20090408] synonym: "dorsal tegmental nucleus pars ventralis" EXACT [NLXANAT:20090408] synonym: "pars ventralis of the dorsal tegmental nucleus" RELATED [NLXANAT:20090408] synonym: "pars ventralis of the dorsal tegmental nucleus of Gudden" RELATED [NLXANAT:20090408] xref: NLXANAT:20090408 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002143 {source="NIFSTD"} ! dorsal tegmental nucleus property_value: taxon_notes "According to Hayakawa and Zuo (1983), the TDV cannot be clearly identified in the tree shrew or in human" xsd:string [Term] id: UBERON:0014570 name: CA1 alveus def: "CA1 portion of the alveus." [NLXANAT:1005038] synonym: "alveus of the CA1 field" EXACT [NeuroNames:2938] xref: FMA:277874 xref: neuronames:2938 xref: NLXANAT:1005038 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0014571 name: CA3 alveus def: "Part of alveus lying within hippocampal sector CA3." [NLXANAT:1005039] synonym: "alveus of the CA3 field" EXACT [NeuroNames:2948] xref: FMA:277878 xref: neuronames:2948 xref: NLXANAT:1005039 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0014589 name: anterior nucleus of hypothalamus anterior part synonym: "AHNa" BROAD OMO:0003000 [BIRNLEX:1109, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus anterior part" RELATED [BAMS:AHNa] synonym: "anterior hypothalamic nucleus, anterior part" RELATED [BAMS:AHNa] synonym: "anterior nucleus of hypothalamus anterior part" EXACT HUMAN_PREFERRED [BIRNLEX:1109] xref: BAMS:AHNa xref: BIRNLEX:1109 xref: MBA:700 xref: neuronames:1903 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014590 name: anterior nucleus of hypothalamus central part synonym: "AHNc" BROAD OMO:0003000 [BIRNLEX:1119, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic area central part" RELATED [BAMS:AHC] synonym: "anterior hypothalamic area, central part" RELATED [BAMS:AHC] synonym: "anterior hypothalamic central part" RELATED [BAMS:AHNc] synonym: "anterior hypothalamic nucleus central part" RELATED [BAMS:AHNc] synonym: "anterior hypothalamic nucleus, central part" RELATED [BAMS:AHC, BAMS:AHNc] synonym: "anterior nucleus of hypothalamus central part" EXACT HUMAN_PREFERRED [BIRNLEX:1119] xref: BAMS:AHC xref: BAMS:AHNc xref: BIRNLEX:1119 xref: MBA:708 xref: neuronames:1932 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014591 name: anterior nucleus of hypothalamus posterior part synonym: "AHNp" BROAD OMO:0003000 [BIRNLEX:1125, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus posterior part" RELATED [BAMS:AHNp] synonym: "anterior hypothalamic nucleus, posterior part" RELATED [BAMS:AHNp] synonym: "anterior hypothalamic posterior part" RELATED [BAMS:AHNp] synonym: "anterior nucleus of hypothalamus posterior part" EXACT HUMAN_PREFERRED [BIRNLEX:1125] xref: BAMS:AHNp xref: BIRNLEX:1125 xref: DMBA:16240 xref: MBA:724 xref: neuronames:1930 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014592 name: anterior nucleus of hypothalamus dorsal part synonym: "AHNd" BROAD OMO:0003000 [BIRNLEX:1139, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic dorsal part" RELATED [BAMS:AHNd] synonym: "anterior hypothalamic nucleus dorsal part" RELATED [BAMS:AHNd] synonym: "anterior hypothalamic nucleus, dorsal part" RELATED [BAMS:AHD, BAMS:AHNd] synonym: "anterior nucleus of hypothalamus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1139] xref: BAMS:AHD xref: BAMS:AHNd xref: BIRNLEX:1139 xref: MBA:716 xref: neuronames:1929 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014593 name: tuberomammillary nucleus dorsal part synonym: "TMd" BROAD OMO:0003000 [BIRNLEX:1290, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1290] synonym: "tuberomammillary nucleus, dorsal part" RELATED [BAMS:TMd] xref: BAMS:TMd xref: BIRNLEX:1290 xref: MBA:1126 xref: neuronames:1881 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleus [Term] id: UBERON:0014594 name: tuberomammillary nucleus ventral part synonym: "TMv" BROAD OMO:0003000 [BIRNLEX:1294, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus ventral part" EXACT HUMAN_PREFERRED [BIRNLEX:1294] xref: BAMS:TMv xref: BIRNLEX:1294 xref: MBA:1 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleus [Term] id: UBERON:0014595 name: paraventricular nucleus of the hypothalamus descending division - medial parvocellular part, ventral zone synonym: "paraventricular hypothalamic nucleus medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1342] synonym: "paraventricular nucleus of the hypothalamus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "PVHmpv" BROAD OMO:0003000 [BIRNLEX:1342, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHmpv xref: BIRNLEX:1342 xref: HBA:4576 xref: MBA:464 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014596 name: paraventricular nucleus of the hypothalamus descending division - dorsal parvocellular part synonym: "paraventricular hypothalamic nucleus dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1348] synonym: "paraventricular nucleus of the hypothalamus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "PVHdp" BROAD OMO:0003000 [BIRNLEX:1348, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHdp xref: BIRNLEX:1348 xref: HBA:4577 xref: MBA:439 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014597 name: paraventricular nucleus of the hypothalamus descending division - lateral parvocellular part synonym: "paraventricular hypothalamic nucleus lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "paraventricular hypothalamic nucleus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1354] synonym: "paraventricular nucleus of the hypothalamus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "PVHlp" BROAD OMO:0003000 [BIRNLEX:1354, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHlp xref: BIRNLEX:1354 xref: HBA:4578 xref: MBA:455 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014598 name: paraventricular nucleus of the hypothalamus descending division - forniceal part synonym: "paraventricular hypothalamic nucleus forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular hypothalamic nucleus, descending division, forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular nucleus of the hypothalamus descending division - forniceal part" EXACT HUMAN_PREFERRED [BIRNLEX:1374] synonym: "paraventricular nucleus of the hypothalamus, descending division, forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular nucleus of the hypothalamus, parvicellular division forniceal part" RELATED [BAMS:PVHf] synonym: "PVHf" BROAD OMO:0003000 [BIRNLEX:1374, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHf xref: BIRNLEX:1374 xref: HBA:4579 xref: MBA:447 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014599 name: paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part synonym: "paraventricular hypothalamic nucleus anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1384] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "PVHam" BROAD OMO:0003000 [BIRNLEX:1384, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHam xref: BIRNLEX:1384 xref: HBA:4581 xref: MBA:47 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division [Term] id: UBERON:0014600 name: paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part synonym: "paraventricular hypothalamic nucleus medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1388] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "PVHmm" BROAD OMO:0003000 [BIRNLEX:1388, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHmm xref: BIRNLEX:1388 xref: HBA:4582 xref: MBA:79 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division [Term] id: UBERON:0014601 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part synonym: "paraventricular hypothalamic nucleus posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1394] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "PVHpm" BROAD OMO:0003000 [BIRNLEX:1394, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHpm xref: BIRNLEX:1394 xref: HBA:4583 xref: MBA:103 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division [Term] id: UBERON:0014602 name: paraventricular nucleus of the hypothalamus descending division synonym: "paraventricular hypothalamic nucleus, descending division" RELATED [BAMS:PVHd] synonym: "paraventricular nucleus of the hypothalamus descending division" EXACT HUMAN_PREFERRED [BIRNLEX:1413] synonym: "paraventricular nucleus of the hypothalamus, descending division" RELATED [BAMS:PVHd] synonym: "PVHd" BROAD OMO:0003000 [BIRNLEX:1413, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHd xref: BIRNLEX:1413 xref: DHBA:10477 xref: HBA:4575 xref: MBA:63 xref: neuronames:3229 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014603 name: paraventricular nucleus of the hypothalamus magnocellular division synonym: "paraventricular hypothalamic nucleus magnocellular division" RELATED [BAMS:PVHm] synonym: "paraventricular hypothalamic nucleus, magnocellular division" RELATED [BAMS:PVHm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1419] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division" RELATED [BAMS:PVHm] synonym: "PVHm" BROAD OMO:0003000 [BIRNLEX:1419, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHm xref: BIRNLEX:1419 xref: DHBA:10478 xref: HBA:4580 xref: MBA:71 xref: neuronames:3230 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014604 name: paraventricular nucleus of the hypothalamus parvocellular division synonym: "paraventricular hypothalamic nucleus parvicellular division" RELATED [BAMS:PVHp] synonym: "paraventricular hypothalamic nucleus, parvicellular division" RELATED [BAMS:PVHp] synonym: "paraventricular nucleus of the hypothalamus parvicellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1426] synonym: "paraventricular nucleus of the hypothalamus, parvicellular division" RELATED [BAMS:PVHp] synonym: "PVHp" BROAD OMO:0003000 [BIRNLEX:1426, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHp xref: BIRNLEX:1426 xref: DHBA:10479 xref: HBA:4586 xref: MBA:94 xref: neuronames:3231 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014605 name: fundus striati def: "The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia)." [NLX:144261] synonym: "fundus of striatum" RELATED [BAMS:FS] synonym: "fundus of the striatum" RELATED [NLX:144261] synonym: "fundus striati" EXACT [NLX:144261] synonym: "striatal fundus" RELATED [NLX:144261] xref: BAMS:FS xref: BAMS:FStr xref: MBA:998 xref: neuronames:1784 xref: neuronames:2158 xref: NLX:144261 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0005403 {source="ABA"} ! ventral striatum [Term] id: UBERON:0014607 name: thoracic spinal cord lateral horn def: "A spinal cord lateral horn that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord intermediate horn" RELATED [BIRNLEX:1397] synonym: "thoracic spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1397] xref: BIRNLEX:1397 xref: SCTID:367875001 xref: UMLS:C0228631 {source="BIRNLEX:1397"} xref: UMLS:C1288551 {source="BIRNLEX:1397"} is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0003038 ! thoracic spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014608 name: inferior occipital gyrus subset: human_reference_atlas synonym: "gyrus occipitalis inferior" RELATED OMO:0003011 [NeuroNames:156] synonym: "gyrus occipitalis tertius" RELATED OMO:0003011 [NeuroNames:156] synonym: "inferior occipital gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1399] xref: BAMS:IOG xref: BAMS:O3 xref: BIRNLEX:1399 xref: DHBA:12153 xref: FMA:273129 xref: HBA:4205 xref: neuronames:156 {source="BIRNLEX:1399"} xref: SCTID:279183001 xref: UMLS:C1110643 {source="BIRNLEX:1399"} is_a: UBERON:0014640 ! occipital gyrus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0014609 name: thoracic spinal cord dorsal horn def: "A dorsal horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1404] synonym: "thoracic spinal cord posterior horn" RELATED [BIRNLEX:1404] xref: BIRNLEX:1404 xref: SCTID:362442007 xref: UMLS:C0228628 {source="BIRNLEX:1404"} is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014610 name: thoracic spinal cord ventral horn def: "A ventral horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord anterior horn" RELATED [BIRNLEX:1410] synonym: "thoracic spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1410] xref: BIRNLEX:1410 xref: SCTID:367876000 xref: UMLS:C0228632 {source="BIRNLEX:1410"} xref: UMLS:C1288552 {source="BIRNLEX:1410"} is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014611 name: apex of thoracic spinal cord dorsal horn subset: human_reference_atlas synonym: "apex of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1427] synonym: "apex of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1427] xref: BIRNLEX:1427 xref: SCTID:367877009 xref: UMLS:C0228629 {source="BIRNLEX:1427"} is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014612 name: substantia gelatinosa of thoracic spinal cord dorsal horn def: "Substantia gelatinosa of thoracic spinal cord posterior horn." [BIRNLEX:1432] subset: human_reference_atlas synonym: "substantia gelatinosa of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1432] synonym: "substantia gelatinosa of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1432] xref: BIRNLEX:1432 xref: SCTID:367878004 xref: UMLS:C0228630 {source="BIRNLEX:1432"} xref: UMLS:C1288554 {source="BIRNLEX:1432"} is_a: UBERON:0002181 ! substantia gelatinosa relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014613 name: cervical spinal cord gray matter def: "A gray matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1521] xref: BIRNLEX:1521 xref: SCTID:362438009 xref: UMLS:C0228610 {source="BIRNLEX:1521"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014614 name: cervical spinal cord white matter def: "A white matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1531] xref: BIRNLEX:1531 xref: SCTID:174829001 xref: UMLS:C0228616 {source="BIRNLEX:1531"} is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014615 name: accessory nerve root def: "A nerve root that is part of a accessory XI nerve." [OBOL:automatic] synonym: "accessory nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:1580] synonym: "accessory portion of spinal accessory nerve" RELATED [NeuroNames:703] synonym: "bulbar accessory nerve" RELATED [NeuroNames:703] synonym: "bulbar part of accessory nerve" RELATED [NeuroNames:703] synonym: "c11n" BROAD OMO:0003000 [BIRNLEX:1580, NIFSTD:NeuroNames_abbrevSource] synonym: "cranial accessory nerve" RELATED [NeuroNames:703] synonym: "cranial part of accessory nerve" RELATED [BAMS:c11n] synonym: "cranial part of the accessory nerve" RELATED [NeuroNames:703] synonym: "cranial portion of eleventh cranial nerve" RELATED [NeuroNames:703] synonym: "internal branch of accessory nerve" RELATED [NeuroNames:703] synonym: "nerve XI (cranialis)" RELATED [NeuroNames:703] synonym: "pars vagalis of nervus accessorius" RELATED OMO:0003011 [NeuroNames:703] synonym: "radices craniales nervi accessorii" RELATED OMO:0003011 [NeuroNames:703] synonym: "root of accessory nerve" EXACT [] xref: BAMS:c11n xref: BIRNLEX:1580 xref: DHBA:12883 xref: DMBA:17749 xref: HBA:9340 xref: neuronames:703 {source="BIRNLEX:1580"} xref: SCTID:280187004 xref: Wikipedia:Cranial_root_of_accessory_nerves is_a: UBERON:0002211 ! nerve root [Term] id: UBERON:0014616 name: dorsal nerve root of thoracic spinal cord synonym: "dorsal nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1601] synonym: "posterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1601] xref: BIRNLEX:1601 xref: SCTID:367883007 xref: UMLS:C1288559 {source="BIRNLEX:1601"} is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve [Term] id: UBERON:0014617 name: ventral nerve root of thoracic spinal cord synonym: "anterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1606] synonym: "ventral nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1606] xref: BIRNLEX:1606 xref: SCTID:367882002 xref: UMLS:C0228639 {source="BIRNLEX:1606"} is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve [Term] id: UBERON:0014618 name: middle frontal sulcus synonym: "intermediate frontal sulcus" RELATED [NeuroNames:62] synonym: "MFS" BROAD OMO:0003000 [BIRNLEX:1650, NIFSTD:NeuroNames_abbrevSource] synonym: "middle frontal fissure" RELATED [BIRNLEX:1650] synonym: "middle frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1650] synonym: "sulcus F3" RELATED [BIRNLEX:1650] synonym: "sulcus frontalis intermedius" RELATED OMO:0003011 [NeuroNames:62] synonym: "sulcus frontalis medius" RELATED [BIRNLEX:1650] synonym: "sulcus frontalis medius (Eberstaller)" RELATED OMO:0003011 [NeuroNames:62] xref: BAMS:mfs xref: BIRNLEX:1650 xref: DHBA:146034816 xref: HBA:9359 xref: neuronames:62 {source="BIRNLEX:1650"} xref: SCTID:369227007 xref: UMLS:C0228199 {source="BIRNLEX:1650"} is_a: UBERON:0014639 ! frontal sulcus [Term] id: UBERON:0014619 name: cervical spinal cord lateral horn def: "A spinal cord lateral horn that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord intermediate horn" RELATED [BIRNLEX:1665] synonym: "cervical spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1665] xref: BIRNLEX:1665 xref: SCTID:174268004 xref: UMLS:C0228614 {source="BIRNLEX:1665"} xref: UMLS:C1278739 {source="BIRNLEX:1665"} is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0002726 ! cervical spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014620 name: cervical spinal cord dorsal horn def: "A dorsal horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1673] synonym: "cervical spinal cord posterior horn" RELATED [BIRNLEX:1673] xref: BIRNLEX:1673 xref: SCTID:362439001 xref: UMLS:C0228611 {source="BIRNLEX:1673"} is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014621 name: cervical spinal cord ventral horn def: "A ventral horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord anterior horn" RELATED [BIRNLEX:1680] synonym: "cervical spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1680] xref: BIRNLEX:1680 xref: MESH:D066151 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:174363005 xref: UMLS:C0228615 {source="BIRNLEX:1680"} xref: UMLS:C1278740 {source="BIRNLEX:1680"} is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014622 name: apex of cervical spinal cord dorsal horn subset: human_reference_atlas synonym: "apex of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1714] synonym: "apex of cervical spinal cord posterior horn" RELATED [BIRNLEX:1714] xref: BIRNLEX:1714 xref: SCTID:174452008 xref: UMLS:C0228612 {source="BIRNLEX:1714"} is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014623 name: substantia gelatinosa of cervical spinal cord dorsal horn def: "A substantia gelatinosa that is part of a cervical spinal cord dorsal horn." [OBOL:automatic] subset: human_reference_atlas synonym: "substantia gelatinosa of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1723] synonym: "substantia gelatinosa of cervical spinal cord posterior horn" RELATED [BIRNLEX:1723] xref: BIRNLEX:1723 xref: SCTID:174544008 xref: UMLS:C0228613 {source="BIRNLEX:1723"} is_a: UBERON:0002181 ! substantia gelatinosa relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014624 name: basis modioli synonym: "base of modiolus cochleae" EXACT [FMA:75640] synonym: "base of modiolus of cochlea" RELATED [BIRNLEX:2522] synonym: "basis cochleae" EXACT OMO:0003011 [FMA:75640, FMA:TA] synonym: "basis modioli" EXACT HUMAN_PREFERRED [BIRNLEX:2522] xref: BIRNLEX:2522 xref: FMA:75640 xref: SCTID:279799003 xref: UMLS:C0458781 {source="BIRNLEX:2522"} is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006723 ! cochlear modiolus [Term] id: UBERON:0014626 name: base of cochlear canal synonym: "base of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2556] xref: BIRNLEX:2556 xref: SCTID:279778001 xref: UMLS:C0458766 {source="BIRNLEX:2556"} is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014628 name: vestibular fissure of the cochlear canal synonym: "vestibular fissure of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2558] xref: BIRNLEX:2558 xref: SCTID:279772000 xref: UMLS:C0458761 {source="BIRNLEX:2558"} is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014629 name: terminal part of the cochlear canal synonym: "terminal part of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2559] xref: BIRNLEX:2559 xref: SCTID:279780007 xref: UMLS:C0458768 {source="BIRNLEX:2559"} is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014630 name: ventral gray commissure of spinal cord synonym: "anterior grey commissure of spinal cord" EXACT [FMA:77038] synonym: "commissura grisea anterior medullae spinalis" EXACT [FMA:TA] synonym: "spinal cord anterior gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2676] synonym: "ventral grey commissure of spinal cord" EXACT [FMA:77038] xref: BIRNLEX:2676 xref: FMA:77038 xref: SCTID:88806005 xref: UMLS:C0228572 {source="BIRNLEX:2676"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissure [Term] id: UBERON:0014631 name: dorsal gray commissure of spinal cord def: "The part of the gray commissure in the spinal central gray posterior to the central canal of the spinal cord." [NeuroNames:2017] synonym: "commissura grisea posterior medullae spinalis" EXACT [FMA:TA] synonym: "dorsal gray commissure" EXACT [NeuroNames:2017] synonym: "dorsal grey commissure of spinal cord" EXACT [FMA:77037] synonym: "posterior grey commissure of spinal cord" EXACT [FMA:77037] synonym: "spinal cord posterior gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2677] xref: BIRNLEX:2677 xref: FMA:77037 xref: neuronames:2017 xref: SCTID:21169000 xref: UMLS:C0228573 {source="BIRNLEX:2677"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissure property_value: taxon_notes "It is identified by Nissl stain and found in the human ( Crosby-1962 ) and the rat ( Swanson-2004 )." xsd:string [Term] id: UBERON:0014632 name: apex of lumbar spinal cord dorsal horn subset: human_reference_atlas synonym: "apex of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:811] synonym: "apex of lumbar spinal cord posterior horn" RELATED [BIRNLEX:811] xref: BIRNLEX:811 xref: SCTID:314425003 xref: UMLS:C0228647 {source="BIRNLEX:811"} is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014633 name: substantia gelatinosa of lumbar spinal cord dorsal horn def: "A substantia gelatinosa that is part of a lumbar spinal cord dorsal horn." [OBOL:automatic] subset: human_reference_atlas synonym: "substantia gelatinosa of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:819] synonym: "substantia gelatinosa of lumbar spinal cord posterior horn" RELATED [BIRNLEX:819] xref: BIRNLEX:819 xref: SCTID:314519000 xref: UMLS:C0228648 {source="BIRNLEX:819"} xref: UMLS:C1282211 {source="BIRNLEX:819"} is_a: UBERON:0002181 ! substantia gelatinosa relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014634 name: ventral nerve root of cervical spinal cord def: "A ventral root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] synonym: "anterior nerve root of cervical spinal cord" RELATED [BIRNLEX:958] synonym: "ventral nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:958] xref: BIRNLEX:958 xref: SCTID:174925008 xref: UMLS:C1278750 {source="BIRNLEX:958"} is_a: UBERON:0002260 ! ventral root of spinal cord is_a: UBERON:0009632 {source="NIFSTD"} ! root of cervical nerve [Term] id: UBERON:0014635 name: dorsal nerve root of cervical spinal cord def: "A dorsal root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] synonym: "dorsal nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:964] synonym: "posterior nerve root of cervical spinal cord" RELATED [BIRNLEX:964] xref: BIRNLEX:964 xref: SCTID:175023008 xref: UMLS:C1278751 {source="BIRNLEX:964"} is_a: UBERON:0002261 ! dorsal root of spinal cord is_a: UBERON:0009632 {source="NIFSTD"} ! root of cervical nerve [Term] id: UBERON:0014636 name: thoracic spinal cord gray matter def: "A gray matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:980] xref: BIRNLEX:980 xref: SCTID:362441000 xref: UMLS:C0228627 {source="BIRNLEX:980"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014637 name: thoracic spinal cord white matter def: "A white matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:999] xref: BIRNLEX:999 xref: SCTID:367881009 xref: UMLS:C0228633 {source="BIRNLEX:999"} xref: UMLS:C1288557 {source="BIRNLEX:999"} is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014638 name: lumbar spinal cord dorsal horn def: "A dorsal horn of spinal cord that is part of a lumbar spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:884] synonym: "lumbar spinal cord posterior horn" RELATED [BIRNLEX:884] xref: BIRNLEX:884 xref: UMLS:C1282146 {source="BIRNLEX:884"} is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0002792 ! lumbar spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014639 name: frontal sulcus def: "A sulcus of brain that is part of a frontal cortex." [OBOL:automatic] synonym: "frontal lobe sulci" EXACT OMO:0003004 [HBA:FLs] synonym: "frontal lobe sulcus" EXACT [] xref: HBA:9354 xref: NCIT:C32639 xref: UMLS:C0459388 {source="ncithesaurus:Frontal_Sulcus"} is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0014640 name: occipital gyrus def: "A gyrus that is part of a occipital lobe." [OBOL:automatic] synonym: "gyrus occipitalis" RELATED OMO:0003011 [NeuroNames:152] xref: BAMS:OG xref: BIRNLEX:747 xref: neuronames:152 {source="BIRNLEX:747"} xref: UMLS:C1110642 {source="BIRNLEX:747"} is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0014641 name: terminal nerve root def: "A nerve root that extends_fibers_into a terminal nerve." [OBOL:automatic] synonym: "cranial nerve 0 root" EXACT [Wikipedia:Terminal_nerve] synonym: "root of terminal nerve" EXACT [] synonym: "terminal nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:4045] xref: BIRNLEX:4045 is_a: UBERON:0002211 ! nerve root [Term] id: UBERON:0014642 name: vestibulocerebellum def: "A phylogenetic subdivision of the cerebellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait." [Wikipedia:Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] synonym: "archaeocerebellum" RELATED [BIRNLEX:904] synonym: "archeocerebellum" RELATED [BIRNLEX:904] synonym: "archicerebellum" EXACT [] synonym: "archicerebellum" RELATED [BIRNLEX:904] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0014643 name: spinocerebellum def: "A phylogenetic subdivision of the cerebellum, the intermediate part, which regulates body and limb movements. It receives proprioception input from the dorsal columns of the spinal cord (including the spinocerebellar tract) and the trigeminal nerve, as well as from visual and auditory systems. It sends fibres to deep cerebellar nuclei which in turn project to both the cerebral cortex and the brain stem, thus providing modulation of descending motor systems." [Wikipedia:Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] synonym: "paleocerebellum" EXACT [] xref: Wikipedia:Cerebellum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: editor_note "consider merging into UBERON:0004006 ! cerebellum intermediate zone" xsd:string [Term] id: UBERON:0014644 name: cerebrocerebellum alt_id: UBERON:0004005 def: "The part of the cerebellar cortex that receives input from the cerebral cortex via axons from the pontine relay nuclei." [https://www.ncbi.nlm.nih.gov/books/NBK11100/] subset: human_reference_atlas subset: pheno_slim synonym: "cerebellum lateral hemisphere" EXACT [MP:0009965] synonym: "cerebellum lateral zone" EXACT [MP:0009965] synonym: "cerebrocerebellum" RELATED INCONSISTENT [MP:0009965] synonym: "neocerebellum" EXACT [] synonym: "pontocerebellum" EXACT [] xref: DHBA:12390 xref: neuronames:2128 xref: Wikipedia:Cerebellum is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "the most lateral paired regions of the cerebellum; the lateral zone receives input from the parietal cortex via pontocerebellar mossy fibers regarding the location and position of the body and integrates input signals with indications of muscle activit[MP:0009965]y" xsd:string {source="MP:0009965"} [Term] id: UBERON:0014645 name: nucleus H of ventral tegmentum def: "A nucleus present in the ventral tegmentum of squalomorph sharks." [ISBN:0471888893] synonym: "nucleus H" BROAD [] is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 ! ventral tegmental area [Term] id: UBERON:0014646 name: nucleus K of ventral tegmentum def: "A nucleus present in the ventral tegmentum of skates." [ISBN:0471888893] synonym: "nucleus K" BROAD [] is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 ! ventral tegmental area [Term] id: UBERON:0014647 name: hemisphere part of cerebellar anterior lobe def: "A multi-tissue structure that is part of a anterior lobe of cerebellum and is part of a cerebellar hemisphere." [OBOL:automatic] synonym: "hemisphere of anterior lobe" EXACT [FMA:72254] synonym: "hemisphere of anterior lobe of cerebellum" EXACT [FMA:72254] synonym: "hemispherium lobus anterior" EXACT OMO:0003011 [FMA:72254, FMA:TA] xref: BAMS:HAL xref: BIRNLEX:1339 xref: FMA:72254 xref: HBA:12931 xref: neuronames:653 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum relationship: part_of UBERON:0002245 ! cerebellar hemisphere [Term] id: UBERON:0014648 name: hemisphere part of cerebellar posterior lobe def: "A multi-tissue structure that is part of a cerebellar hemisphere and is part of a posterior lobe of cerebellum." [OBOL:automatic] synonym: "hemisphere of posterior lobe" EXACT [FMA:72256] synonym: "hemisphere of posterior lobe of cerebellum" EXACT [FMA:72256] synonym: "hemispherium lobus posterior" EXACT OMO:0003011 [FMA:72256, FMA:TA] xref: BAMS:HPL xref: FMA:72256 xref: HBA:12936 xref: neuronames:664 xref: NLXANAT:20081261 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum [Term] id: UBERON:0014649 name: white matter of medulla oblongata def: "A white matter that is part of a medulla oblongata." [OBOL:automatic] synonym: "medullary white matter" RELATED [BAMS:mw] synonym: "substantia alba medullae oblongatae" EXACT [FMA:TA] synonym: "white matter of medulla" EXACT [FMA:83944] synonym: "white substance of medulla" EXACT [FMA:83944] xref: BAMS:mw xref: BIRNLEX:1024 xref: BIRNLEX:1414 xref: FMA:83944 xref: neuronames:778 is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0019262 ! white matter of myelencephalon relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0014650 name: dorsal hypothalamic nucleus def: "A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region." [BTO:0002451, Dorlands_Medical_Dictionary:MerckSource] synonym: "dorsal nucleus of hypothalamus" EXACT [FMA:77685] synonym: "nucleus dorsalis hypothalami" RELATED [BTO:0002451] xref: BAMS:DHy xref: BAMS:Do xref: BAMS:OH xref: BTO:0002451 xref: FMA:77685 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014663 name: nucleus recessus lateralis xref: BTO:0003662 is_a: UBERON:0036177 ! nucleus recessus [Term] id: UBERON:0014664 name: nucleus recessus posterioris xref: BTO:0003663 is_a: UBERON:0036177 ! nucleus recessus [Term] id: UBERON:0014665 name: nucleus preopticus def: "The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals." [BTO:0003664] synonym: "nucleus praeopticus" RELATED [BTO:0003664] xref: BTO:0003664 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014666 name: nucleus recessus preopticus xref: BTO:0003665 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014667 name: periventricular nucleus of hypothalamus def: "A small nucleus at the base of the hypothalamus, adjacent to the arcuate nucleus." [BTO:0003795] synonym: "periventricular hypothalamic nucleus" RELATED [BTO:0003795] synonym: "periventricular nucleus of the hypothalamus" RELATED [BAMS:PE] xref: BAMS:PE xref: BAMS:Pe xref: BTO:0003795 xref: neuronames:1593 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014668 name: distal interphalangeal joint of manual digit 2 subset: pheno_slim synonym: "distal interphalangeal joint of index finger" EXACT [FMA:35334] synonym: "distal interphalangeal joint of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: FMA:35334 xref: SCTID:361852003 is_a: UBERON:0007729 ! interphalangeal joint of manual digit 2 is_a: UBERON:0014677 ! distal interphalangeal joint of digit 2 [Term] id: UBERON:0014670 name: distal interphalangeal joint of manual digit 4 subset: pheno_slim synonym: "distal interphalangeal joint of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of ring finger" EXACT [FMA:35340] xref: FMA:35340 xref: SCTID:361856000 is_a: UBERON:0007731 ! interphalangeal joint of manual digit 4 is_a: UBERON:0014679 ! distal interphalangeal joint of digit 4 [Term] id: UBERON:0014671 name: distal interphalangeal joint of manural digit 5 synonym: "distal interphalangeal joint of little finger" EXACT [FMA:35343] synonym: "distal interphalangeal joint of manural digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: FMA:35343 xref: SCTID:361858004 is_a: UBERON:0007732 ! interphalangeal joint of manual digit 5 is_a: UBERON:0014680 ! distal interphalangeal joint of digit 5 [Term] id: UBERON:0014672 name: distal interphalangeal joint of pedal digit 2 subset: pheno_slim synonym: "distal interphalangeal joint of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of second digit of foot" EXACT [FMA:35369] synonym: "distal interphalangeal joint of second toe" EXACT [FMA:35369] xref: FMA:35369 xref: SCTID:361878007 is_a: UBERON:0007725 ! interphalangeal joint of pedal digit 2 is_a: UBERON:0014677 ! distal interphalangeal joint of digit 2 [Term] id: UBERON:0014674 name: distal interphalangeal joint of pedal digit 4 subset: pheno_slim synonym: "distal interphalangeal joint of fourth digit of foot" EXACT [FMA:35387] synonym: "distal interphalangeal joint of fourth toe" EXACT [FMA:35387] synonym: "distal interphalangeal joint of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: FMA:35387 xref: SCTID:361882009 is_a: UBERON:0007727 ! interphalangeal joint of pedal digit 4 is_a: UBERON:0014679 ! distal interphalangeal joint of digit 4 [Term] id: UBERON:0014675 name: distal interphalangeal joint of pedal digit 5 subset: pheno_slim synonym: "distal interphalangeal joint of fifth digit of foot" EXACT [FMA:35393] synonym: "distal interphalangeal joint of fifth toe" EXACT [FMA:35393] synonym: "distal interphalangeal joint of little toe" EXACT [FMA:35393] synonym: "distal interphalangeal joint of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: FMA:35393 xref: SCTID:361884005 is_a: UBERON:0007728 ! interphalangeal joint of pedal digit 5 is_a: UBERON:0014680 ! distal interphalangeal joint of digit 5 [Term] id: UBERON:0014677 name: distal interphalangeal joint of digit 2 def: "A distal interphalangeal joint that is part of a digit 2." [OBOL:automatic] synonym: "distal interphalangeal joint 2" RELATED [] synonym: "distal interphalangeal joint of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: NCIT:C102291 is_a: UBERON:0009768 ! distal interphalangeal joint relationship: part_of UBERON:0006049 ! digit 2 property_value: editor_note "check whether NCITA classes belong with hand or generic autopod" xsd:string [Term] id: UBERON:0014679 name: distal interphalangeal joint of digit 4 def: "A distal interphalangeal joint that is part of a digit 4." [OBOL:automatic] synonym: "distal interphalangeal joint 4" RELATED [] synonym: "distal interphalangeal joint of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: NCIT:C102293 is_a: UBERON:0009768 ! distal interphalangeal joint relationship: part_of UBERON:0006051 ! digit 4 [Term] id: UBERON:0014680 name: distal interphalangeal joint of digit 5 def: "A distal interphalangeal joint that is part of a digit 5." [OBOL:automatic] synonym: "distal interphalangeal joint 5" RELATED [] synonym: "distal interphalangeal joint of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: NCIT:C102294 is_a: UBERON:0009768 ! distal interphalangeal joint relationship: part_of UBERON:0006052 ! digit 5 [Term] id: UBERON:0014682 name: tooth whorl def: "A spirally arranged cluster of teeth." [http://orcid.org/0000-0002-6601-2165] synonym: "spiral tooth cluster" NARROW [] synonym: "tooth spiral" EXACT [] synonym: "whorl of teeth" EXACT [] is_a: UBERON:0009678 ! tooth row relationship: present_in_taxon NCBITaxon:7863 {notes="stem", source="PMID:23445952", taxon="helicoprion"} relationship: present_in_taxon NCBITaxon:8287 [Term] id: UBERON:0014683 name: parasymphisial tooth whorl def: "A tooth whorl located at or near the mandibular symphysis." [http://orcid.org/0000-0002-6601-2165] synonym: "parasymphisial tooth spiral" EXACT [] synonym: "parasymphysical tooth spiral" EXACT [] is_a: UBERON:0009679 ! set of lower jaw teeth is_a: UBERON:0014682 ! tooth whorl relationship: present_in_taxon NCBITaxon:8287 [Term] id: UBERON:0014684 name: Helicoprion tooth whorl def: "A tooth whorl found in extinct holocephalids, in which the teeth in the center of the spiral are smallest and oldest, probably occupying the entire mandibular arch." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Helicoprion#Nature_of_the_tooth_whorl] is_a: UBERON:0009679 ! set of lower jaw teeth is_a: UBERON:0014682 ! tooth whorl relationship: present_in_taxon NCBITaxon:7863 {notes="stem", source="PMID:23445952", taxon="helicoprion"} [Term] id: UBERON:0014685 name: pterygoid plexus def: "The pterygoid plexus is a venous plexus of considerable size, and is situated between the temporalis muscle and lateral pterygoid muscle, and partly between the two pterygoid muscles." [Wikipedia:Pterygoid_plexus] subset: human_reference_atlas synonym: "middle meningeal vein" RELATED [Wikipedia:Pterygoid_plexus] synonym: "plexus pterygoideus" RELATED OMO:0003011 [Wikipedia:Pterygoid_plexus] synonym: "plexus venosus pterygoideus" EXACT OMO:0003011 [FMA:TA] synonym: "pterygoid plexus vein" RELATED [Wikipedia:Pterygoid_plexus] synonym: "pterygoid venous plexus" EXACT [FMA:50944, Wikipedia:Pterygoid_plexus] xref: FMA:50944 xref: Wikipedia:Pterygoid_plexus is_a: UBERON:0001593 {source="FMA"} ! venous plexus is_a: UBERON:0011362 ! cranial blood vasculature relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014686 name: angular vein def: "The angular vein formed by the junction of the frontal vein and supraorbital vein, runs obliquely downward, on the side of the root of the nose, to the level of the lower margin of the orbit, where it becomes the anterior facial vein. It receives the external nasal veins of the ala nasi, and communicates with the superior ophthalmic vein through the nasofrontal vein, thus establishing an important anastomosis between the anterior facial vein and the cavernous sinus." [Wikipedia:Angular_vein] subset: human_reference_atlas xref: FMA:50893 xref: SCTID:151804007 xref: Wikipedia:Angular_vein is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014687 name: temporal sulcus def: "Any of three grooves in the temporal lobe including the inferior, middle, and superior temporal sulci." [ncithesaurus:Temporal_Sulcus] synonym: "temporal lobe sulci" EXACT OMO:0003004 [HBA:TLs] synonym: "temporal lobe sulcus" EXACT [] xref: HBA:9377 xref: NCIT:C33744 xref: UMLS:C0459389 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0014689 name: middle temporal sulcus def: "A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus." [ncithesaurus:Middle_Temporal_Sulcus] synonym: "middle (medial) temporal sulcus" RELATED [BAMS:mts] xref: BAMS:mts xref: HBA:10150 xref: NCIT:C33127 xref: neuronames:131 xref: SCTID:279345006 xref: UMLS:C0228241 is_a: UBERON:0014687 ! temporal sulcus [Term] id: UBERON:0014690 name: left gastric vein def: "The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system." [Wikipedia:Left_gastric_vein] subset: human_reference_atlas synonym: "coronary vein" RELATED [Wikipedia:Left_gastric_vein] synonym: "vena gastrica sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastric_vein] xref: FMA:15399 xref: SCTID:281061005 xref: Wikipedia:Left_gastric_vein is_a: UBERON:0004450 ! gastric vein relationship: present_in_taxon NCBITaxon:9606 property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014691 name: right gastric vein def: "The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation." [Wikipedia:Right_gastric_vein] subset: human_reference_atlas synonym: "pyloric vein" RELATED [Wikipedia:Right_gastric_vein] synonym: "vena gastrica dextra" EXACT OMO:0003011 [Wikipedia:Right_gastric_vein] xref: FMA:15400 xref: SCTID:281062003 xref: Wikipedia:Right_gastric_vein is_a: UBERON:0004450 ! gastric vein relationship: present_in_taxon NCBITaxon:9606 property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014692 name: superficial epigastric vein def: "The superficial epigastric vein is a vein which travels with the superficial epigastric artery. It joins the accessory saphenous vein near the fossa ovalis." [Wikipedia:Superficial_epigastric_vein] subset: human_reference_atlas xref: FMA:44318 xref: SCTID:286971006 xref: Wikipedia:Superficial_epigastric_vein is_a: UBERON:0006356 ! epigastric vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014693 name: inferior alveolar artery subset: human_reference_atlas xref: FMA:49695 xref: SCTID:276151008 is_a: UBERON:0009654 ! alveolar artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014694 name: posterior auricular artery def: "The posterior auricular artery is a small artery and arises from the external carotid artery, above the Digastric muscle and Stylohyoid muscle, opposite the apex of the styloid process. It ascends posteriorly beneath the parotid gland, along the styloid process of the temporal bone, between the cartilage of the ear and the mastoid process of the temporal bone along the lateral side of the head. The posterior auricular artery supplies blood to the scalp posterior to the auricle and to the auricle itself." [Wikipedia:Posterior_auricular_artery] subset: human_reference_atlas xref: FMA:49624 xref: SCTID:244220004 xref: Wikipedia:Posterior_auricular_artery is_a: UBERON:0009655 ! auricular artery is_a: UBERON:0035398 ! branch of external carotid artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014695 name: deep auricular artery def: "The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint." [Wikipedia:Deep_auricular_artery] subset: human_reference_atlas xref: FMA:49689 xref: SCTID:147157007 xref: Wikipedia:Deep_auricular_artery is_a: UBERON:0009655 ! auricular artery relationship: part_of UBERON:0035551 ! deep vasculature relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014696 name: anterior choroidal artery def: "The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery." [Wikipedia:Anterior_choroidal_artery] subset: human_reference_atlas synonym: "anterior choroidal" RELATED [Wikipedia:Anterior_choroidal_artery] xref: FMA:50087 xref: NCIT:C32083 xref: SCTID:244211008 xref: Wikipedia:Anterior_choroidal_artery is_a: UBERON:0013151 ! choroidal artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014697 name: posterior choroidal artery xref: FMA:50657 xref: NCIT:C33352 xref: SCTID:369342007 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0013151 ! choroidal artery is_a: UBERON:0035508 ! branch of posterior cerebral artery relationship: part_of UBERON:0001636 {source="FMA"} ! posterior cerebral artery [Term] id: UBERON:0014698 name: lacrimal caruncle synonym: "caruncula lacrimalis" EXACT OMO:0003011 [FMA:TA] xref: FMA:77672 xref: SCTID:362530000 is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva [Term] id: UBERON:0014699 name: extraembryonic venous system def: "A venous system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] xref: EHDAA2:0000479 xref: EMAPA:16374 xref: VHOG:0000282 is_a: UBERON:0004582 ! venous system is_a: UBERON:0014701 {source="VHOG"} ! extraembryonic vascular system [Term] id: UBERON:0014701 name: extraembryonic vascular system def: "A vascular system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] xref: EHDAA2:0000478 xref: EMAPA:16370 xref: VHOG:0001396 is_a: UBERON:0007798 ! vascular system relationship: part_of UBERON:0016887 ! entire extraembryonic component [Term] id: UBERON:0014702 name: frontonasal process epithelium def: "An epithelium that is part of a frontonasal prominence." [OBOL:automatic] xref: EHDAA2:0004108 xref: EMAPA:32918 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0004066 ! frontonasal prominence [Term] id: UBERON:0014703 name: anal membrane ectodermal component def: "A unilaminar epithelium that develops_from a ectoderm and is part of a anal region." [OBOL:automatic] xref: EHDAA2:0004019 xref: EMAPA:25040 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0014704 name: pleuroperitoneal canal lumen def: "An anatomical space that is enclosed by a pleuroperitoneal canal." [OBOL:automatic] synonym: "pleuro-peritoneal canal cavity" EXACT [EMAPA:25034] xref: EHDAA2:0004736 xref: EMAPA:25034 is_a: UBERON:0000464 ! anatomical space relationship: develops_from UBERON:0002323 {source="EHDAA2"} ! coelemic cavity lumen [Term] id: UBERON:0014705 name: median lingual swelling epithelium def: "An epithelium that is part of a median lingual swelling." [OBOL:automatic] synonym: "tuberculum impar epitheilium" RELATED [EMAPA:17188] xref: EHDAA2:0001085 xref: EMAPA:17188 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0013156 {source="EHDAA2"} ! 1st arch mandibular endoderm relationship: part_of UBERON:0006756 ! median lingual swelling [Term] id: UBERON:0014706 name: primitive renal collecting duct system synonym: "metanephros primitive collecting ducts" EXACT [EHDAA2:0001147] synonym: "primitive collecting duct" EXACT [EMAPA:17646] xref: EHDAA2:0001147 xref: EMAPA:17646 is_a: UBERON:0007501 {source="EHDAA2"} ! arborizing epithelial duct system is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0000084 {source="EHDAA2"} ! ureteric bud [Term] id: UBERON:0014707 name: hyoplastron def: "A paired plastron element that is in the anterior part of the plastron, anterior to the hypoplastron, posterior to the epiplastron and adjacent to the median entoplastron." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0011657 ! dermal element of plastron is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0014708 name: costal plate of carapace def: "One of a series of plates on each side of the carapace, forming two rows between the peripheral plates and the median neural plates." [http://orcid.org/0000-0002-6601-2165] synonym: "lateral plate of carapace" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0011665 ! carapace bone is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0014709 name: carapace primordium def: "A primordium that gives rise to a carapace." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0014710 name: carapacial ridge def: "A longitidunial ridge on the lateral aspect of the flank that appears in the late pharyngula stage of chelonians. It forms the leading edge of the laterally expanding carapacial primordium." [http://embryo.asu.edu/pages/development-turtle-carapace-1989-ann-campbell-burke] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0014709 ! carapace primordium [Term] id: UBERON:0014711 name: carapacial ridge mesenchyme def: "A mesenchyme that is part of a carapacial ridge." [OBOL:automatic] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0014710 ! carapacial ridge [Term] id: UBERON:0014712 name: carapacial ridge ectoderm def: "An epithelium that is part of a carapacial ridge." [OBOL:automatic] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0000076 {source="cjm"} ! external ectoderm relationship: part_of UBERON:0014710 ! carapacial ridge [Term] id: UBERON:0014716 name: interlobular duct def: "A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory." [ncithesaurus:Interlobular_Duct] subset: human_reference_atlas xref: NCIT:C32828 xref: UMLS:C1512857 xref: Wikipedia:Interlobular_ducts is_a: UBERON:0035050 ! excretory duct relationship: part_of UBERON:0002384 ! connective tissue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014717 name: mucous acinus def: "The secretory unit of a mucous gland. The acinar portion is composed of mucous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] synonym: "acinus of mucuous gland" EXACT [] synonym: "mucus acinus" EXACT [] xref: FMA:86278 is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0000414 ! mucous gland [Term] id: UBERON:0014719 name: intralobular duct def: "A duct that is located within a lobule, with no more connective tissue intervening between ducts and secretory units (i.e., acini or tubules) than between adjacent secretory units. Intercalated and striated ducts are intralobular." [http://www.siumed.edu/~dking2/intro/glands.htm] subset: human_reference_atlas synonym: "intralobular ductule" RELATED [] xref: SCTID:205214009 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0009911 ! lobule relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014720 name: interlobar duct def: "A duct that is located between lobes, within conspicuous, thick connective tissue septa that separate lobes. All interlobar ducts are excretory." [http://www.siumed.edu/~dking2/intro/glands.htm] synonym: "intralobular ductule" RELATED [] is_a: UBERON:0035050 ! excretory duct relationship: part_of UBERON:0002384 ! connective tissue [Term] id: UBERON:0014725 name: intercalated duct def: "A small duct which drains individual secretory units. These are usually inconspicuous, lined by a simple epithelium consisting of low cuboidal cells." [http://www.siumed.edu/~dking2/intro/glands.htm] synonym: "secretory duct" RELATED [] xref: NCIT:C32820 xref: UMLS:C1512817 is_a: UBERON:0014719 ! intralobular duct [Term] id: UBERON:0014726 name: intercalated duct of pancreas def: "An intercalated duct that is part of a pancreas." [OBOL:automatic] subset: human_reference_atlas synonym: "ductus intercalatus (pancreas)" EXACT [FMA:16013] synonym: "pancreatic ductule" EXACT [FMA:16013] xref: FMA:16013 xref: NCIT:C49267 xref: SCTID:247520007 is_a: UBERON:0014725 ! intercalated duct relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014727 name: intercalated duct of salivary gland def: "The tiny tubules with a very thin epithelial layer in the salivary glands running from the salivary acini into the striated duct." [ncithesaurus:Intercalated_Duct_of_the_Salivary_Gland_System] xref: FMA:60050 xref: NCIT:C49266 is_a: UBERON:0001837 ! duct of salivary gland is_a: UBERON:0014725 ! intercalated duct property_value: function_notes "secretes bicarbonate, absorbs Cl-" xsd:string [Term] id: UBERON:0014729 name: striated duct of salivary gland def: "Gland duct which connects an intercalated duct to an interlobular duct in a salivary gland." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Striated_duct] xref: FMA:60051 xref: NCIT:C33635 xref: UMLS:C1514993 is_a: UBERON:0001837 ! duct of salivary gland is_a: UBERON:0014719 ! intralobular duct [Term] id: UBERON:0014730 name: osteon def: "A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae." [MESH:A10.165.265.507] synonym: "bone matrix" RELATED [Wikipedia:Osteon] synonym: "haversian canal" RELATED [MESH:A10.165.265.507] synonym: "haversian system" EXACT [FMA:32693] synonym: "haversian system" RELATED [MESH:A10.165.265.507, Wikipedia:Osteon] synonym: "haversian systems" RELATED [Wikipedia:Osteon] synonym: "osteonum" EXACT [FMA:32693] synonym: "volkmann's vessel" RELATED [Wikipedia:Osteon] xref: BTO:0004592 xref: FMA:32693 xref: MESH:D006253 xref: NCIT:C32714 xref: SCTID:361726004 xref: Wikipedia:Osteon is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001439 ! compact bone tissue [Term] id: UBERON:0014731 name: haversian canal def: "Haversian canals are a series of tubes around narrow channels formed by lamellae. This is the region of bone called compact bone. Osteons are arranged in parallel to the long axis of the bone. The Haversian canals surround blood vessels and nerve cells throughout the bone and communicate with osteocytes in lacunae (spaces within the dense bone matrix that contain the living bone cells) through canaliculi. This unique arrangement is conducive to mineral salt deposits and storage which gives bone tissue its strength." [Wikipedia:Haversian_canal] synonym: "haversian canals" RELATED [Wikipedia:Haversian_canal] synonym: "nutrient canal" RELATED [MESH:A10.165.265.507] xref: FMA:224787 xref: NCIT:C32713 xref: SCTID:3336003 xref: Wikipedia:Haversian_canal is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0014730 ! osteon [Term] id: UBERON:0014732 name: compound cell cluster organ def: "An anatomical structure consisting of multiple cell cluster organs, that has a largely bona-fide boundary and that does not contain portions of tissue." [CARO:0010002] comment: Examples: compound eye; Johnston's organ. subset: upper_level xref: CARO:0010002 xref: FBbt:00007230 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000062 ! organ [Term] id: UBERON:0014733 name: dorsal ventricular ridge of pallium def: "A large expansion of the lateral wall of the telencephalon, located in the pallium. Found in reptiles and birds." [http://icb.oxfordjournals.org/content/42/4/743.full, PMID:23027930] synonym: "dorsal ventricular ridge" EXACT [] synonym: "DVR" RELATED OMO:0003000 [PMID:23027930] is_a: UBERON:0002616 ! regional part of brain relationship: never_in_taxon NCBITaxon:40674 relationship: part_of UBERON:0000203 ! pallium relationship: present_in_taxon NCBITaxon:8782 property_value: taxon_notes "Because of the phyletic continuity of the DVR in living reptiles and birds, and its numerous similarities in topography, histology, and connections in these two groups, there is little question that the DVR of reptiles and birds is homologous as a telencephalic neural center. In contrast, the telencephalon in living mammals does not appear to have a DVR. It has been suggested, however, that their predecessors did have such a ridge, and that its cells migrated to the surface of the telencephalon during development to form part of the cerebral cortices which characterize all living mammals (Karten, 1969, 1991)[http://icb.oxfordjournals.org/content/42/4/743.full]" xsd:string [Term] id: UBERON:0014734 name: allocortex def: "One of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] synonym: "intercalated nucleus of the medulla" RELATED [NeuroNames:759] synonym: "nucleus intercalatus (staderini)" RELATED OMO:0003011 [NeuroNames:759] synonym: "transitional cortex" RELATED [ISBN:0471888893] xref: BAMS:All xref: DHBA:10292 xref: FMA:83687 xref: neuronames:759 xref: NLX:143557 xref: Wikipedia:Allocortex is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0001950 ! neocortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014735 name: paleocortex def: "Part of the allocortex defined on the basis of cytoarchitecture. The other two are archicortex and periallocortex. It consists of very thin, primitive cortex with few clearly defined layers. It is distinguished ontogenetically by the fact that it does not develop through a cortical plate. It includes the olfactory bulb, accessory olfactory bulb, olfactory tubercle, septum, prepyriform area and periamygdalar area ( Stephan-1975 ). (adapted from Brain Info)." [NLX:143559] synonym: "palaeocortex" EXACT OMO:0003011 [FMA:62430, FMA:TA] synonym: "paleocortex" RELATED [NeuroNames:2336] synonym: "paleocortex (semicortex)" EXACT [DHBA:10306] synonym: "paleocortex (Zilles)" RELATED [NeuroNames:2336] xref: BAMS:Paleocortex xref: DHBA:10306 xref: FMA:62430 xref: neuronames:2336 xref: NLX:143559 xref: Wikipedia:Paleocortex is_a: UBERON:0014734 {source="FMA"} ! allocortex property_value: location_notes "Paleocortex is present in the parahippocampal gyrus,[1] olfactory bulb, accessory olfactory bulb, olfactory tubercle, piriform cortex, periamygdalar area,[2] anterior olfactory nucleus, anterior perforated substance, and prepyriform area" xsd:string {source="WP"} [Term] id: UBERON:0014736 name: periallocortex def: "Agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] synonym: "periallocortex" EXACT [NeuroNames:2315] xref: DHBA:10313 xref: neuronames:2315 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014738 name: medial pallium def: "Subdivision of pallium that is located is the medial position in vertebrates with an evaginated brain and in the distal position in vertebrates with an everted brain." [ISBN:0471888893] synonym: "area dorsalis telencephali, zona medialis" RELATED [] synonym: "distal pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "hippocampal pallium" RELATED [ISBN:0471888893] synonym: "lateral pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "lateral zone of dorsal telencephalon" EXACT [ZFA:0000536] synonym: "medial zone of dorsal telencephalic area" EXACT [] synonym: "medial zone of dorsal telencephalon" EXACT [] synonym: "MP" BROAD OMO:0003000 [PMID:23375746] xref: TAO:0000536 xref: ZFA:0000536 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: homology_notes "The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved." xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0014740 name: dorsal pallium def: "Subdivision of pallium that is located dorsally." [ISBN:0471888893] synonym: "area dorsalis telencephali, zona dorsalis" EXACT [] synonym: "dorsal zone of D" RELATED [] synonym: "dorsal zone of dorsal telencephalic area" EXACT [] synonym: "dorsal zone of dorsal telencephalon" EXACT [] synonym: "DP" BROAD OMO:0003000 [PMID:23375746] xref: TAO:0000506 xref: ZFA:0000506 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: homology_notes "The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved." xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0014741 name: lateral pallium def: "Subdivision of pallium that is located laterally." [ISBN:0471888893] synonym: "area dorsalis telencephali, zona lateralis" EXACT [] synonym: "lateral zone of D" EXACT [] synonym: "lateral zone of dorsal telencephalic area" EXACT [] synonym: "LP" BROAD OMO:0003000 [PMID:23375746] synonym: "medial pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "olfactory pallium" RELATED [ISBN:0471888893] synonym: "piriform pallium" RELATED [ISBN:0471888893] synonym: "proximal pallium (everted brain)" RELATED [ISBN:0471888893] xref: DMBA:15956 xref: TAO:0000391 xref: ZFA:0000391 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: homology_notes "The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved." xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0014742 name: central nucleus of pallium def: "A nucleus located in the dorsal pallium that is present in sharks, skates and rays and extends at some levels to the midline.." [ISBN:0471888893] is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0014740 ! dorsal pallium [Term] id: UBERON:0014751 name: P1 area of pallium (Myxiniformes) def: "Most superficial of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014752 name: P2 area of pallium (Myxiniformes) def: "Area directly deep to the P1 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014753 name: P3 area of pallium (Myxiniformes) def: "Area directly deep to the P2 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014754 name: P4 area of pallium (Myxiniformes) def: "Area directly deep to the P3 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014755 name: P5 area of pallium (Myxiniformes) def: "Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014756 name: Wulst def: "A nuclear complex in the avian telecephalon dorsal to the DVR. The Wulst has telencephalic circuitry similar to the DVR." [PMID:23027930] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014757 name: hyperpallium apicale def: "Missing definition for term UBERON:0014757. Please replace it using linked reference." [PMID:23027930] synonym: "HA" RELATED OMO:0003000 [PMID:23027930] xref: BTO:0003402 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014758 name: interstitial part of hyperpallium apicale def: "Missing definition for term UBERON:0014758. Please replace it using linked reference." [PMID:23027930] synonym: "IHA" RELATED OMO:0003000 [PMID:23027930] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014757 ! hyperpallium apicale [Term] id: UBERON:0014759 name: entopallium def: "The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves." [PMID:16041718] synonym: "core region of ectostriatum" RELATED [PMID:14681937] synonym: "E" RELATED OMO:0003000 [PMID:16041718] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014760 name: gustatory nucleus def: "The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 )." [NeuroNames:1386] synonym: "dorsal visceral gray" RELATED [NeuroNames:1386] synonym: "gustatory gray" RELATED [NeuroNames:1386] synonym: "gustatory nucleus" RELATED [NeuroNames:1386] xref: neuronames:1386 xref: Wikipedia:Gustatory_nucleus is_a: UBERON:0009050 ! nucleus of solitary tract relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0014761 name: spinal trigeminal tract def: "Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex." [BTO:0003701, http://www.sylvius.com/] synonym: "descending root of V" RELATED [NeuroNames:1589] synonym: "descending tract of trigeminal" RELATED [NeuroNames:1589] synonym: "spinal root of trigeminal" RELATED [NeuroNames:1589] synonym: "spinal tract of the trigeminal nerve" RELATED [NeuroNames:1589] synonym: "spinal tract of trigeminal nerve" RELATED [NeuroNames:1589] synonym: "spinal trigeminal tract" RELATED [NeuroNames:1589] synonym: "spinal V tract" RELATED [NeuroNames:1589] synonym: "tract of descending root of trigeminal" RELATED [NeuroNames:1589] synonym: "tractus spinalis nervi trigeminalis" RELATED OMO:0003011 [NeuroNames:1589] synonym: "tractus spinalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:1589] synonym: "trigeminospinal tract" RELATED [NeuroNames:1589] xref: BAMS:sp5 xref: BTO:0003701 xref: DHBA:12792 xref: DMBA:17797 xref: FMA:75700 xref: FMA:83851 xref: HBA:265505650 xref: MBA:794 xref: neuronames:1589 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002298 {source="BTO"} ! brainstem [Term] id: UBERON:0014762 name: fused metapodial bones 2-4 def: "An element formed from the fusion of metapodium bones 2, 3 and 4 (i.e. either metatarsals 2-4 or metacarpals 3-4)." [http://orcid.org/0000-0002-6601-2165] synonym: "fused central metapodials" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "fused metapodials 2-4" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "metapodial 2+3+4" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 relationship: present_in_taxon NCBITaxon:51337 [Term] id: UBERON:0014763 name: fused metatarsal bones 2-4 def: "An element formed from the fusion of metapodium bones 2, 3 and 4 in the pedal autopod." [http://orcid.org/0000-0002-6601-2165] synonym: "cannon bone" RELATED [NCBITaxon:51337] synonym: "fused central metatarsals" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "fused metatarsals 2-4" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "metatarsal 2+3+4" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0013588 ! fused metatarsal bones 3 and 4 is_a: UBERON:0014762 ! fused metapodial bones 2-4 relationship: present_in_taxon NCBITaxon:51337 property_value: taxon_notes "The cannon bone of the 3-toed jerboa (jaculus jaculus) is the postnatal fusion of the 3 central metatarsals, which are distinct ossified elements prenatally" xsd:string {source="PMID:22135653", taxon="NCBITaxon:51337"} [Term] id: UBERON:0014764 name: anatomical line along groove def: "Anatomical line that delineates a furrow or depression in an organ or tissue." [https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4, ZFA:0001690] subset: non_informative synonym: "groove" RELATED [ZFA:0001690] synonym: "line delineating groove" EXACT [] xref: AAO:0010276 xref: FMA:75037 xref: TAO:0001838 is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0014765 name: crus of diaphragm def: "The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta." [PMID:23586979] comment: Classification notes: May be considered an external sphincter[PMID:8224664] synonym: "crura of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] synonym: "crural diaphragm" EXACT [PMID:23586979] synonym: "crus of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] synonym: "diaphragm crura" RELATED OMO:0003004 [] synonym: "diaphragmatic crura" RELATED [Wikipedia:Crus_of_diaphragm] xref: EHDAA2:0000597 xref: EMAPA:17703 xref: SCTID:244668003 xref: VHOG:0001546 xref: Wikipedia:Crus_of_diaphragm is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0001103 {source="PMID:23586979"} ! diaphragm [Term] id: UBERON:0014766 name: right crus of diaphragm def: "A crus of diaphragm that is in_the_right_side_of a diaphragm." [OBOL:automatic] synonym: "crus dextrum (Diaphragma)" EXACT OMO:0003011 [FMA:58286, FMA:TA] synonym: "crus dextrum diaphragmatis" EXACT OMO:0003011 [FMA:58286, FMA:TA] synonym: "external sphincter of esophagus" EXACT [FMA:58286] synonym: "right crus of diaphragm" EXACT [FMA:58286] synonym: "right crus of lumbar part of diaphragm" EXACT [FMA:58286] xref: FMA:58286 xref: SCTID:362690009 is_a: UBERON:0014765 ! crus of diaphragm is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014767 name: left crus of diaphragm def: "A crus of diaphragm that is in_the_left_side_of a diaphragm." [OBOL:automatic] synonym: "crus sinistrum (Diaphragma)" EXACT OMO:0003011 [FMA:58287, FMA:TA] synonym: "crus sinistrum diaphragmatis" EXACT OMO:0003011 [FMA:58287, FMA:TA] synonym: "left crus of diaphragm" EXACT [FMA:58287] synonym: "left crus of lumbar part of diaphragm" EXACT [FMA:58287] xref: FMA:58287 xref: SCTID:244937004 is_a: UBERON:0014765 ! crus of diaphragm is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014768 name: superior palpebral vein def: "A blood vessel that drains from from an upper eyelid." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "venae palpebrales superiores" RELATED OMO:0003011 [] xref: FMA:50907 is_a: UBERON:0014769 ! palpebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014769 name: palpebral vein def: "A blood vessel that drains from from an eyelid." [http://orcid.org/0000-0002-6601-2165] synonym: "palpebral veins" RELATED OMO:0003004 [] synonym: "venae palpebrales" RELATED OMO:0003011 [] xref: FMA:51997 xref: SCTID:152208004 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein [Term] id: UBERON:0014770 name: palpebral artery def: "An artery that supplies blood to an eyelid." [http://orcid.org/0000-0002-6601-2165] xref: SCTID:148571007 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel property_value: taxon_notes "In humans, the eyelids are supplied with blood by two arches on each upper and lower lid. The arches are formed by anastamoses of the lateral palpebral arteries and medial palpebral arteries, branching off from the lacrimal artery and ophthalmic artery, respectively. In amphibians, the eyelids may be supplied by branches of the lateral pretrosal arteries.[cjm]" xsd:string [Term] id: UBERON:0014772 name: lateral palpebral artery def: "The lateral palpebral arteries are small arteries which supply the eyelid." [Wikipedia:Lateral_palpebral_arteries] subset: human_reference_atlas synonym: "lateral palpebral branch of ophthalmic artery" EXACT [FMA:49940] synonym: "lateral palpebral branches" RELATED [Wikipedia:Lateral_palpebral_arteries] xref: FMA:49940 xref: SCTID:369323008 xref: Wikipedia:Lateral_palpebral_arteries is_a: UBERON:0014770 ! palpebral artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014773 name: medial palpebral artery def: "The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior." [Wikipedia:Medial_palpebral_arteries] subset: human_reference_atlas synonym: "inferior palpebral artery" RELATED [Wikipedia:Medial_palpebral_arteries] synonym: "internal palpebral arteries" RELATED [Wikipedia:Medial_palpebral_arteries] synonym: "internal palpebral artery" RELATED [Wikipedia:Medial_palpebral_arteries] synonym: "medial palpebral branch of ophthalmic artery" EXACT [FMA:50012] synonym: "superior palpebral" RELATED [Wikipedia:Medial_palpebral_arteries] synonym: "superior palpebral artery" RELATED [Wikipedia:Medial_palpebral_arteries] xref: FMA:50012 xref: SCTID:369331003 xref: Wikipedia:Medial_palpebral_arteries is_a: UBERON:0014770 ! palpebral artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014775 name: prosomere def: "A neuromere that is part of the presumptive forebrain." [http://orcid.org/0000-0002-6601-2165] synonym: "forebrain neuromere" EXACT [] synonym: "forebrain segment" BROAD [] synonym: "future prosencephalon" RELATED [] synonym: "segment of forebrain" BROAD [] xref: FMA:61996 is_a: UBERON:0004731 ! neuromere relationship: part_of UBERON:0006240 ! future forebrain [Term] id: UBERON:0014776 name: midbrain neuromere def: "A neuromere that is part of the presumptive midbrain." [http://orcid.org/0000-0002-6601-2165] synonym: "future mesencephalon" RELATED [] synonym: "mesomere" BROAD [] synonym: "mesomere group" RELATED [EHDAA2:0004352] synonym: "mesomere of nervous system" EXACT [] synonym: "midbrain segment" BROAD [] synonym: "neuromere of mesomere group" EXACT [] synonym: "segment of midbrain" BROAD [] xref: EHDAA2:0004352 xref: FMA:61997 is_a: UBERON:0004731 ! neuromere relationship: part_of UBERON:0009616 ! presumptive midbrain [Term] id: UBERON:0014777 name: spinal neuromere def: "A neuromere that is part of the presumptive spinal cord." [http://orcid.org/0000-0002-6601-2165] synonym: "spinal cord metameric segment" EXACT [] synonym: "spinal cord segment" RELATED [TAO:0001332] synonym: "spinal neuromeres" EXACT OMO:0003004 [TAO:0001332] xref: TAO:0001332 xref: ZFA:0001332 is_a: UBERON:0004731 ! neuromere relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0014778 name: cell group def: "A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala (CUMBO)." [NLX:532] subset: cumbo subset: upper_level synonym: "group of cells" EXACT [] is_a: UBERON:0000061 ! anatomical structure property_value: editor_note "consider adding to CARO." xsd:string [Term] id: UBERON:0014779 name: liver reticuloendothelial system def: "A reticuloendothelial system that is part of a liver." [OBOL:automatic] xref: BTO:0000831 is_a: UBERON:0000363 ! reticuloendothelial system relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0014780 name: palatine aponeurosis def: "Attached to the posterior border of the hard palate is a thin, firm fibrous lamella called the palatine aponeurosis, which supports the muscles and gives strength to the soft palate. It is thicker above than below, where it becomes very thin and difficult to define. Laterally it is continuous with the pharyngeal aponeurosis. It serves as the insertion for the Tensor veli palatini and Levator veli palatini, and the origin for the Musculus uvulae, Palatopharyngeus, and Palatoglossus. It provides support for the soft palate." [Wikipedia:Palatine_aponeurosis] synonym: "aponeurosis of tensor veli palatini" EXACT [FMA:49429] synonym: "aponeurosis palatina" EXACT [Wikipedia:Palatine_aponeurosis] xref: FMA:49429 xref: Wikipedia:Palatine_aponeurosis is_a: UBERON:0006614 ! aponeurosis relationship: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0014781 name: stomodeal ectoderm xref: BTO:0004224 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000930 ! stomodeum [Term] id: UBERON:0014782 name: allantois of embryonic urinary system comment: remnant of allantois in embryo synonym: "allantois" RELATED [EHDAA2:0000113] xref: EHDAA2:0000113 xref: EMAPA:28547 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure relationship: develops_from UBERON:0004340 {source="EHDAA2"} ! allantois relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001008 {source="EHDAA2"} ! renal system relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region [Term] id: UBERON:0014783 name: cloacal muscle def: "Any muscle organ that is part of a cloaca." [OBOL:automatic] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0014784 name: transverse cloacal muscle def: "A very prominent superficial muscle and with its almost transverse course it forms the boundary between the abdomen and the tail." [DOI:10.1242/dev.01545] synonym: "m. transversus cloacae" EXACT [DOI:10.1242/dev.01545] synonym: "musculus transversus cloacae" EXACT [DOI:10.1242/dev.01545] is_a: UBERON:0014783 ! cloacal muscle [Term] id: UBERON:0014785 name: levator cloacae def: "A long narrow muscle arising from the underside of feather bulge of the lateral rectrices, inserting near the midline of the cloacal tubercle - phallus." [DOI:10.1242/dev.01545] synonym: "m. retractor phalli caudalis" EXACT [DOI:10.1242/dev.01545] synonym: "musculus levator cloacae" EXACT [DOI:10.1242/dev.01545] synonym: "musculus retractor phalli caudalis" EXACT [DOI:10.1242/dev.01545] is_a: UBERON:0014783 ! cloacal muscle [Term] id: UBERON:0014786 name: extraembryonic umbilical vein def: "Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta." [VHOG:0000015] synonym: "extraembryonic umbilical vein" EXACT [VHOG:0000015] xref: VHOG:0000015 is_a: UBERON:0001638 ! vein is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0011921 {source="EHDAA2"} ! connecting stalk blood islands relationship: part_of UBERON:0002066 ! umbilical vein relationship: part_of UBERON:0007807 {source="EHDAA2"} ! connecting stalk vasculature relationship: part_of UBERON:0014699 {source="EHDAA2"} ! extraembryonic venous system [Term] id: UBERON:0014787 name: left extraembryonic umbilical vein def: "An extraembryonic umbilical vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] synonym: "extraembryonic umbilical vein left" EXACT [EHDAA2:0000938] xref: EHDAA2:0000938 is_a: UBERON:0014786 ! extraembryonic umbilical vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014788 name: right extraembryonic umbilical vein def: "An extraembryonic umbilical vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] synonym: "extraembryonic umbilical vein right" EXACT [EHDAA2:0001722] xref: EHDAA2:0001722 is_a: UBERON:0014786 ! extraembryonic umbilical vein is_a: UBERON:0015212 ! lateral structure property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014789 name: embryo portion of umbilical vein synonym: "embryonic umbilical vein" EXACT [VHOG:0000400] xref: VHOG:0000400 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002066 ! umbilical vein property_value: external_definition "Vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta[VHOG:0000400]." xsd:string {source="VHOG:0000400"} [Term] id: UBERON:0014790 name: lingual septum def: "The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ." [Wikipedia:Lingual_septum] subset: human_reference_atlas synonym: "median fibrous septum" RELATED [Wikipedia:Lingual_septum] synonym: "septum of tongue" EXACT [FMA:54813] synonym: "septum of tongue" RELATED [Wikipedia:Lingual_septum] synonym: "tongue septum" RELATED [Wikipedia:Lingual_septum] xref: EMAPA:18274 xref: FMA:54813 xref: SCTID:368727001 xref: Wikipedia:Lingual_septum is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0001723 ! tongue relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014791 name: musculature of forelimb stylopod def: "Any collection of muscles that is part of the forelimb stylopod region [Automatically generated definition]." [OBOL:automatic] synonym: "arm musculature" RELATED INCONSISTENT [FMA:50202] synonym: "muscle group of arm" RELATED INCONSISTENT [FMA:50202] synonym: "musculature of arm" RELATED INCONSISTENT [FMA:50202] synonym: "set of muscles of arm" RELATED INCONSISTENT [FMA:50202] xref: FMA:50202 is_a: UBERON:0004474 ! musculature of arm relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0014792 name: musculature of pelvic complex def: "Any collection of muscles that is part of a pelvic complex. The pelvic complex comprises the pelvic girdle and the associated limb or fin." [OBOL:automatic] synonym: "muscles of lower limb" NARROW [FMA:71297] synonym: "musculature of lower limb" NARROW [FMA:71297] synonym: "musculi membri inferioris" NARROW [FMA:TA] xref: EMAPA:37864 {source="MA:th"} xref: FMA:71297 is_a: UBERON:0001015 ! musculature relationship: part_of UBERON:0010709 ! pelvic complex property_value: editor_note "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0014793 name: musculature of pectoral complex def: "Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin." [OBOL:automatic] synonym: "muscles of upper limb" NARROW [FMA:71296] synonym: "musculature of upper limb" NARROW [FMA:71296] synonym: "musculi membri superioris" NARROW [FMA:TA] synonym: "set of muscles of upper limb" NARROW [FMA:71296] synonym: "upper limb musculature" NARROW [FMA:71296] xref: EMAPA:37861 {source="MA:th"} xref: FMA:71296 is_a: UBERON:0001015 ! musculature relationship: part_of UBERON:0010708 ! pectoral complex property_value: editor_note "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0014794 name: pectoral appendage muscle def: "Any muscle organ that is part of a pectoral appendage (forelimb or pectoral fin)." [OBOL:automatic] is_a: UBERON:0010891 ! pectoral complex muscle relationship: part_of UBERON:0007269 {source="prolog"} ! pectoral appendage musculature [Term] id: UBERON:0014795 name: pelvic appendage muscle def: "Any muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin)." [OBOL:automatic] is_a: UBERON:0010890 ! pelvic complex muscle relationship: part_of UBERON:0007270 {source="prolog"} ! pelvic appendage musculature [Term] id: UBERON:0014796 name: common tendinous ring def: "A ring of fibrous tissue surrounding the optic nerve at its entrance at the apex of the orbit." [Wikipedia:Annulus_of_Zinn] synonym: "annulus of Zinn" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "annulus tendineus communis" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "anulus of Zinn" EXACT [FMA:49071] synonym: "anulus tendineus" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "anulus tendineus communis" EXACT [FMA:TA] synonym: "anulus tendineus communis" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "common annular tendon" EXACT [FMA:49071] synonym: "common anular tendon" EXACT [FMA:49071] synonym: "common tendinous ring" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "ligament of Zinn" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "tendon of Zinn" RELATED [Wikipedia:Annulus_of_Zinn] xref: FMA:49071 xref: Wikipedia:Annulus_of_Zinn is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0004088 ! orbital region [Term] id: UBERON:0014797 name: hypobranchial group muscle def: "A jaw muscle that arises from trunk somites and is innervated by spinal nerves." [ISBN:0073040584] is_a: UBERON:0001630 ! muscle organ relationship: develops_from UBERON:0005598 {source="ISBN:0073040584"} ! trunk somite relationship: seeAlso UBERON:2002200 {comment="We follow Kardong in having a general grouping for jaw musculature from trunk somites - we call this hypobranchial group muscle to avoid a clash with the more specific teleost muscle"} ! hypobranchial muscle [Term] id: UBERON:0014798 name: clavotrapezius muscle def: "The most anterior of the trapezius muscles, found in felids, it is also the largest. Its fibers run obliquely to the ventral surface. Its origin is the superior nuchal line and median dorsal line and its insertion is the clavicle. Its action is to draw the clavicle dorsally and towards the head." [Wikipedia:Cat_anatomy#Clavotrapezius] synonym: "clavotrapezius" EXACT [] is_a: UBERON:0002380 ! trapezius muscle relationship: present_in_taxon NCBITaxon:9681 [Term] id: UBERON:0014799 name: acromiotrapezius muscle def: "Acromiotrapezius is the middle trapezius muscle. It covers the dorsal and lateral surfaces of the scapula. Its origin is the neural spines of the cervical vertebrae and its insertion is in the metacromion process and fascia of the clavotrapezius. Its action is to draw the scapula to the dorsal, and hold the two scapula together." [Wikipedia:Cat_anatomy#Acromiotrapezius] synonym: "acromiotrapezius" EXACT [] is_a: UBERON:0002380 ! trapezius muscle relationship: present_in_taxon NCBITaxon:9681 [Term] id: UBERON:0014800 name: spinotrapezius muscle def: "Spinotrapezius, also called thoracic trapezius, is the most posterior of the three trapezius muscles. It is triangular shaped. Posterior to the acromiotrapezius and overlaps latissimus dorsi on the front. Its origin is the neural spines of the thoracic vertebrae and its insertion is the scapular fascia. Its action is to draw the scapula to the dorsal and caudal regions." [Wikipedia:Cat_anatomy#Spinotrapezius] synonym: "spinotrapezius" EXACT [] synonym: "thoracic trapezius" EXACT [] synonym: "thoracic trapezius muscle" EXACT [] is_a: UBERON:0002380 ! trapezius muscle is_a: UBERON:0034908 ! scapular muscle relationship: present_in_taxon NCBITaxon:9681 [Term] id: UBERON:0014801 name: nuchal line attachment site def: "Any of the four curved lines on the external surface of the occipital bone that serves as an attachment site for a muscle." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Nuchal_lines] synonym: "nuchal line" RELATED [Wikipedia:Nuchal_lines] xref: Wikipedia:Nuchal_lines is_a: UBERON:4200047 ! attachment site relationship: part_of UBERON:0001676 ! occipital bone property_value: editor_note "in FMA this is modeled as an immaterial entity" xsd:string [Term] id: UBERON:0014802 name: highest nuchal line attachment site def: "Of the nuchal lines, the upper, often faintly marked, is named the highest nuchal line, but is sometimes referred to as the Mempin Line, and to it the galea aponeurotica is attached." [Wikipedia:Nuchal_lines] synonym: "highest nuchal line" RELATED [FMA:53106] synonym: "Mempin line" RELATED [Wikipedia:Nuchal_lines] xref: FMA:53106 is_a: UBERON:0014801 ! nuchal line attachment site [Term] id: UBERON:0014803 name: superior nuchal line attachment site def: "Of the nuchal lines, the one below the highest nuchal line is the superior nuchal line. To it is attached the Occipitalis muscle, the Splenius capitis muscle, the trapezius muscle, and the Sternocleidomastoid muscle." [Wikipedia:Nuchal_lines] synonym: "superior nuchal line" RELATED [FMA:53108] xref: FMA:53108 is_a: UBERON:0014801 ! nuchal line attachment site [Term] id: UBERON:0014804 name: median nuchal line attachment site def: "Of the nuchal lines, the one that runs from the external occipital protuberance a ridge or crest is the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchae." [Wikipedia:Nuchal_lines] synonym: "inferior nuchal line" RELATED [FMA:53111] is_a: UBERON:0014801 ! nuchal line attachment site [Term] id: UBERON:0014805 name: inferior nuchal line attachment site def: "Of the nuchal lines, the one running from the middle of the median line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle." [Wikipedia:Nuchal_lines] synonym: "inferior nuchal line" RELATED [FMA:53111] xref: FMA:53111 is_a: UBERON:0014801 ! nuchal line attachment site [Term] id: UBERON:0014835 name: serratus muscle synonym: "serratus" BROAD [] xref: EMAPA:35769 xref: MA:0003025 xref: Wikipedia:Serratus is_a: UBERON:0001630 {source="MA"} ! muscle organ [Term] id: UBERON:0014836 name: levator arcuum muscle synonym: "levator arcuum" EXACT [] synonym: "levatores arcuum" EXACT [] is_a: UBERON:0004164 {source="ISBN:0073040584"} ! branchiomeric muscle [Term] id: UBERON:0014837 name: pectoantebrachialis def: "The most superficial of pectoral muscles, found in some mammals." [ISBN:0073040584] is_a: UBERON:0001495 {source="ISBN:0073040584"} ! pectoral muscle [Term] id: UBERON:0014838 name: xiphihumeralis def: "The most deep of pectoral muscles, found in some mammals." [ISBN:0073040584] is_a: UBERON:0001495 {source="ISBN:0073040584"} ! pectoral muscle [Term] id: UBERON:0014840 name: supracoracoideus muscle def: "A muscle that is important to the body support of limbed reptiles, underlies the front part of the pectoral muscle, arises from the coracoid, and passes to the underpart of the humerus." [http://www.merriam-webster.com/dictionary/supracoracoideus] comment: Ventral group[Kardong] is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0008196 ! muscle of pectoral girdle [Term] id: UBERON:0014842 name: puboischiofemoralis muscle def: "A dorsal muscle of lower tetrapods." [ISBN:0073040584] is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate [Term] id: UBERON:0014847 name: vastus intermedius def: "The Vastus intermedius (Cruraeus) arises from the front and lateral surfaces of the body of the femur in its upper two-thirds, sitting under Rectus Femoris and from the lower part of the lateral intermuscular septum. Its fibers end in a superficial aponeurosis, which forms the deep part of the Quadriceps femoris tendon. The Vastus medialis and Vastus intermedius appear to be inseparably united, but when the Rectus femoris has been reflected a narrow interval will be observed extending upward from the medial border of the patella between the two muscles, and the separation may be continued as far as the lower part of the intertrochanteric line, where, however, the two muscles are frequently continuous." [Wikipedia:Vastus_intermedius_muscle] subset: human_reference_atlas synonym: "cruraeus" RELATED [Wikipedia:Vastus_intermedius_muscle] synonym: "crureus" RELATED [BTO:0002542] synonym: "intermediate great muscle" RELATED [BTO:0002542] synonym: "intermediate vastus muscle" RELATED [BTO:0002542] synonym: "musculus vastus intermedius" RELATED [BTO:0002542] synonym: "vastus intermedialis" RELATED [Wikipedia:Vastus_intermedius_muscle] synonym: "vastus intermedius" RELATED [Wikipedia:Vastus_intermedius_muscle] xref: BTO:0002542 xref: EMAPA:36243 xref: FMA:22433 xref: SCTID:181682001 xref: Wikipedia:Vastus_intermedius_muscle is_a: UBERON:0001377 ! quadriceps femoris relationship: part_of UBERON:0001377 {source="ISBN:0073040584"} ! quadriceps femoris relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Origin: anterior and lateral surfaces of femur; insertion: patella, common tendon of quadriceps femoris; innervation: femoral; action, extends leg[BTO:0002542]." xsd:string {source="BTO:0002542"} [Term] id: UBERON:0014848 name: tendon of quadriceps femoris synonym: "common quadriceps femoris tendon" RELATED [FMA:46900] synonym: "common quadriceps tendon" RELATED [FMA:46900] synonym: "common tendon of quadriceps femoris" EXACT [] synonym: "common tendon of quadriceps femoris muscle complex" RELATED [FMA:46900] synonym: "quadriceps femoris tendon" EXACT [FMA:46900] synonym: "quadriceps tendon" EXACT [FMA:46900] xref: FMA:46900 xref: SCTID:245175008 is_a: UBERON:0000043 {source="FMA"} ! tendon is_a: UBERON:0003589 ! hindlimb connective tissue relationship: part_of UBERON:0001377 {source="FMA"} ! quadriceps femoris [Term] id: UBERON:0014849 name: hemotrichorial placental membrane def: "A placental membrane that consists of three trophoblast cell layers." [http://orcid.org/0000-0002-6601-2165, MP:0012126] synonym: "placenta hemotrichorial membrane" EXACT [MP:0012126] xref: EMAPA:37879 {source="MA:th"} is_a: UBERON:0009002 ! placental membrane relationship: present_in_taxon NCBITaxon:9989 {source="MP"} [Term] id: UBERON:0014850 name: hemomonochorial placental membrane def: "A placental membrane that consists of a single layer of syncytiotrophoblast at term." [http://orcid.org/0000-0002-6601-2165, MP:0012126] synonym: "placenta hemomonochorial membrane" EXACT [MP:0012126] is_a: UBERON:0009002 ! placental membrane relationship: present_in_taxon NCBITaxon:9606 {source="MP"} [Term] id: UBERON:0014851 name: chorda tendinea of left ventricle def: "Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle." [FMA:9349] subset: pheno_slim xref: FMA:9349 is_a: UBERON:0005994 ! chorda tendineae relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0014852 name: chorda tendinea of right ventricle def: "Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle." [FMA:9300] subset: pheno_slim xref: FMA:9300 is_a: UBERON:0005994 ! chorda tendineae relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0014853 name: commissural leaflet of mitral valve def: "Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle." [FMA:223086] synonym: "commissural cusp of mitral valve" EXACT [FMA:223086] xref: FMA:223086 is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet [Term] id: UBERON:0014854 name: anterior leaflet of mitral valve def: "Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7242] synonym: "anterior cusp of mitral valve" EXACT [FMA:7242] synonym: "anterior leaflet" BROAD [https://orcid.org/0000-0003-3308-6245] synonym: "anterior mitral leaflet" EXACT [FMA:7242] synonym: "anteromedial leaflet" BROAD [https://orcid.org/0000-0003-3308-6245] synonym: "anteromedial leaflet of mitral valve" EXACT [FMA:7242] synonym: "aortic leaflet of mitral valve" EXACT [FMA:7242] synonym: "aortic leaflet of the left-sided mitral valve" EXACT [https://orcid.org/0000-0003-3308-6245] synonym: "cuspis anterior valvae atrioventricularis sinistri" EXACT OMO:0003011 [FMA:7242, FMA:TA] synonym: "greater leaflet of mitral valve" EXACT [FMA:7242] synonym: "septal leaflet of mitral valve" EXACT [FMA:7242] xref: FMA:7242 xref: SCTID:244354001 is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet [Term] id: UBERON:0014855 name: posterior leaflet of mitral valve def: "Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7243] synonym: "cuspis posterior (valva mitralis)" EXACT OMO:0003011 [FMA:7243, FMA:TA] synonym: "cuspis posterior valvae atrioventricularis sinistri" EXACT OMO:0003011 [FMA:7243, FMA:TA] synonym: "mural leaflet of mitral valve" EXACT [FMA:7243] synonym: "posterior cusp of mitral valve" EXACT [FMA:7243] synonym: "posterior mitral leaflet" EXACT [FMA:7243] synonym: "posterolateral leaflet of mitral valve" EXACT [FMA:7243] synonym: "smaller leaflet of mitral valve" EXACT [FMA:7243] synonym: "ventricular leaflet of mitral valve" EXACT [FMA:7243] xref: FMA:7243 xref: SCTID:244355000 is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet relationship: part_of UBERON:0007151 {source="FMA"} ! mitral valve leaflet [Term] id: UBERON:0014856 name: cysticercus stage def: "The larval form of any of the Taenia tapeworms." [BTO:0003168, http://www.medterms.com/] synonym: "cysticercus" EXACT [BTO:0003168] xref: BTO:0003168 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000069 ! larval stage [Term] id: UBERON:0014857 name: zoea stage def: "A crustacean larval stage characterised by the use of the thoracic appendages for swimming." [Wikipedia:Crustacean_larvae#Zoea] synonym: "zoea" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0018378 ! crustacean larval stage [Term] id: UBERON:0014858 name: crustacean post-larval stage def: "A crustacean larval stage characterised by the use of abdominal appendages (pleopods) for propulsion." [Wikipedia:Crustacean_larvae#Post-larval] synonym: "glaucothoe stage (hermit crab)" NARROW [] synonym: "parva stage (shrimp)" NARROW [] synonym: "post-larva" RELATED [] synonym: "post-larval" RELATED [] synonym: "post-larval stage" RELATED [] synonym: "postlarva" RELATED [] xref: BTO:0002655 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0018378 ! crustacean larval stage [Term] id: UBERON:0014859 name: megalopa stage def: "The crustacean post-larval stage of a crab." [http://orcid.org/0000-0002-6601-2165] synonym: "megalopa" RELATED [] is_a: UBERON:0014858 ! crustacean post-larval stage property_value: editor_note "Consider merging into parent" xsd:string [Term] id: UBERON:0014860 name: copepodite stage def: "A development stage of copepods which follows the nauplius stage. It is segmented with more than 3 pairs of appendages." [http://www.encyclo.co.uk/define/Copepodite] synonym: "copepodite" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0018378 ! crustacean larval stage [Term] id: UBERON:0014861 name: glaucothoe stage def: "A developmental stage in a hermit crab that has completed the swimming larval stages." [http://www.encyclo.co.uk/define/Copepodite] synonym: "glaucothoe" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0018378 ! crustacean larval stage [Term] id: UBERON:0014862 name: trochophore stage def: "A larval stage of a trochozoan in which the organism is in free-swimming planktonic form with several bands of cilia[WP,modified]." [Wikipedia:Trochophore] synonym: "trochophore" RELATED [] synonym: "trocophore" RELATED [] xref: Wikipedia:Trochophore is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000069 ! larval stage [Term] id: UBERON:0014863 name: veliger stage def: "The characteristic larval stage of the gastropod, bivalve and scaphopod taxonomic classes. It is produced following either the embryonic or trochophore larval stage of development." [Wikipedia:Veliger] synonym: "veliger" RELATED [] xref: Wikipedia:Veliger is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000069 ! larval stage [Term] id: UBERON:0014864 name: caterpillar stage def: "The larval stage of members of the order Lepidoptera." [Wikipedia:Caterpillar] synonym: "caterpillar" RELATED [] xref: Wikipedia:Caterpillar is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0014870 name: inferior orbital fissure def: "The orbital fissure that is situated inferiorly between the greater wing of the sphenoid bone and the maxilla." [http://www.merriam-webster.com/medical/orbital%20fissure] synonym: "infraorbital fissure" RELATED [] synonym: "sphenomaxillary fissure" RELATED [] xref: FMA:54802 xref: SCTID:280560007 xref: Wikipedia:Inferior_orbital_fissure is_a: UBERON:0006271 ! orbital fissure [Term] id: UBERON:0014871 name: distal epiphysis of distal phalanx of pedal digit 1 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 1." [OBOL:automatic] synonym: "distal end of distal phalanx of big toe" EXACT [FMA:33036] synonym: "distal epiphysis of distal phalanx of big toe" EXACT [FMA:33036] synonym: "distal epiphysis of distal phalanx of pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "head of distal phalanx of big toe" EXACT [FMA:33036] synonym: "head of distal phalanx of first digit of foot" EXACT [FMA:33036] synonym: "head of distal phalanx of great toe" EXACT [FMA:33036] synonym: "ungual tuberosity of distal phalanx of big toe" RELATED [FMA:33036] xref: FMA:33036 is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit relationship: part_of UBERON:0004315 ! distal phalanx of pedal digit 1 [Term] id: UBERON:0014872 name: distal epiphysis of distal phalanx of pedal digit 2 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 2." [OBOL:automatic] synonym: "distal end of distal phalanx of second toe" EXACT [FMA:33045] synonym: "distal epiphysis of distal phalanx of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of second toe" EXACT [FMA:33045] synonym: "head of distal phalanx of second toe" EXACT [FMA:33045] synonym: "ungual tuberosity of distal phalanx of second toe" RELATED [FMA:33045] xref: FMA:33045 is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit relationship: part_of UBERON:0004316 ! distal phalanx of pedal digit 2 [Term] id: UBERON:0014873 name: distal epiphysis of distal phalanx of pedal digit 3 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 3." [OBOL:automatic] synonym: "distal end of distal phalanx of third toe" EXACT [FMA:33054] synonym: "distal epiphysis of distal phalanx of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of third toe" EXACT [FMA:33054] synonym: "head of distal phalanx of third digit of foot" EXACT [FMA:33054] synonym: "head of distal phalanx of third toe" EXACT [FMA:33054] synonym: "ungual tuberosity of distal phalanx of third toe" RELATED [FMA:33054] xref: FMA:33054 is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit relationship: part_of UBERON:0004317 ! distal phalanx of pedal digit 3 [Term] id: UBERON:0014874 name: distal epiphysis of distal phalanx of pedal digit 4 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 4." [OBOL:automatic] synonym: "distal end of distal phalanx of fourth toe" EXACT [FMA:33091] synonym: "distal epiphysis of distal phalanx of fourth toe" EXACT [FMA:33091] synonym: "distal epiphysis of distal phalanx of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "head of distal phalanx of fourth digit of foot" EXACT [FMA:33091] synonym: "head of distal phalanx of fourth toe" EXACT [FMA:33091] synonym: "ungal tuberosity of distal phalanx of fourth toe" RELATED [FMA:33091] xref: FMA:33091 is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit relationship: part_of UBERON:0004318 ! distal phalanx of pedal digit 4 [Term] id: UBERON:0014875 name: distal epiphysis of distal phalanx of pedal digit 5 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 5." [OBOL:automatic] synonym: "distal end of distal phalanx of little toe" EXACT [FMA:33106] synonym: "distal epiphysis of distal phalanx of little toe" EXACT [FMA:33106] synonym: "distal epiphysis of distal phalanx of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "head of distal phalanx of fifth digit of foot" EXACT [FMA:33106] synonym: "head of distal phalanx of fifth toe" EXACT [FMA:33106] synonym: "head of distal phalanx of little toe" EXACT [FMA:33106] synonym: "ungual tuberosity of distal phalanx of fifth toe" RELATED [FMA:33106] xref: FMA:33106 is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit relationship: part_of UBERON:0004319 ! distal phalanx of pedal digit 5 [Term] id: UBERON:0014876 name: distal epiphysis of distal phalanx of pedal digit synonym: "distal end of distal phalanx of toe" EXACT [] synonym: "head of distal phalanx of digit of foot" EXACT [] synonym: "head of distal phalanx of digit of pes" EXACT [] synonym: "head of distal phalanx of toe" EXACT [] is_a: UBERON:0011976 ! epiphysis of distal phalanx of pes is_a: UBERON:0013122 ! distal epiphysis of phalanx of pes is_a: UBERON:0014887 ! distal epiphysis of distal phalanx of digit [Term] id: UBERON:0014881 name: distal epiphysis of distal phalanx of manual digit 1 def: "A distal epiphysis that is part of a distal phalanx of manual digit 1." [OBOL:automatic] synonym: "distal end of phalanx of right thumb" EXACT [FMA:37609] synonym: "distal epiphysis of distal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of thumb" EXACT [FMA:37609] synonym: "head of distal phalanx of first digit of hand" EXACT [FMA:37609] synonym: "head of distal phalanx of thumb" EXACT [FMA:37609] synonym: "ungual tuberosity of distal phalanx of thumb" RELATED [FMA:37609] xref: FMA:37609 xref: SCTID:182011000 is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit relationship: part_of UBERON:0004337 ! distal phalanx of manual digit 1 [Term] id: UBERON:0014882 name: distal epiphysis of distal phalanx of manual digit 2 def: "A distal epiphysis that is part of a distal phalanx of manual digit 2." [OBOL:automatic] synonym: "distal end of distal phalanx of index finger" EXACT [FMA:37621] synonym: "distal end of distal phalanx of second finger" EXACT [FMA:37621] synonym: "distal epiphysis of distal phalanx of index finger" EXACT [FMA:37621] synonym: "distal epiphysis of distal phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "head of distal phalanx of index finger" EXACT [FMA:37621] synonym: "head of distal phalanx of second finger" EXACT [FMA:37621] synonym: "ungual tuberosity of distal phalanx of index finger" RELATED [FMA:37621] xref: FMA:37621 xref: SCTID:263457005 is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit relationship: part_of UBERON:0004311 ! distal phalanx of manual digit 2 [Term] id: UBERON:0014883 name: distal epiphysis of distal phalanx of manual digit 3 def: "A distal epiphysis that is part of a distal phalanx of manual digit 3." [OBOL:automatic] synonym: "distal end of distal phalanx of middle finger" EXACT [FMA:37633] synonym: "distal end of distal phalanx of third finger" EXACT [FMA:37633] synonym: "distal epiphysis of distal phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of middle finger" EXACT [FMA:37633] synonym: "head of distal phalanx of middle finger" EXACT [FMA:37633] synonym: "head of distal phalanx of third digit of hand" EXACT [FMA:37633] synonym: "head of distal phalanx of third finger" EXACT [FMA:37633] synonym: "ungual tuberosity of distal phalanx of middle finger" RELATED [FMA:37633] xref: FMA:37633 xref: SCTID:263458000 is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit relationship: part_of UBERON:0004312 ! distal phalanx of manual digit 3 [Term] id: UBERON:0014884 name: distal epiphysis of distal phalanx of manual digit 4 def: "A distal epiphysis that is part of a distal phalanx of manual digit 4." [OBOL:automatic] synonym: "distal end of distal phalanx of fourth finger" EXACT [FMA:37645] synonym: "distal end of distal phalanx of ring finger" EXACT [FMA:37645] synonym: "distal epiphysis of distal phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of ring finger" EXACT [FMA:37645] synonym: "head of distal phalanx of fourth digit of hand" EXACT [FMA:37645] synonym: "head of distal phalanx of fourth finger" EXACT [FMA:37645] synonym: "head of distal phalanx of ring finger" EXACT [FMA:37645] synonym: "ungual tuberosity of distal phalanx of ring finger" RELATED [FMA:37645] xref: FMA:37645 xref: SCTID:263459008 is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit relationship: part_of UBERON:0004313 ! distal phalanx of manual digit 4 [Term] id: UBERON:0014885 name: distal epiphysis of distal phalanx of manual digit 5 def: "A distal epiphysis that is part of a distal phalanx of manual digit 5." [OBOL:automatic] synonym: "distal end of distal phalanx of fifth finger" EXACT [FMA:37657] synonym: "distal end of distal phalanx of little finger" EXACT [FMA:37657] synonym: "distal epiphysis of distal phalanx of little finger" EXACT [FMA:37657] synonym: "distal epiphysis of distal phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "head of distal phalanx of fifth digit of hand" EXACT [FMA:37657] synonym: "head of distal phalanx of fifth finger" EXACT [FMA:37657] synonym: "head of distal phalanx of little finger" EXACT [FMA:37657] synonym: "ungual tuberosity of distal phalanx of little finger" RELATED [FMA:37657] xref: FMA:37657 xref: SCTID:263460003 is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit relationship: part_of UBERON:0004314 ! distal phalanx of manual digit 5 [Term] id: UBERON:0014886 name: distal epiphysis of distal phalanx of manual digit synonym: "distal end of distal phalanx of finger" EXACT [] synonym: "head of distal phalanx of digit of hand" EXACT [] synonym: "head of distal phalanx of digit of manus" EXACT [] synonym: "head of distal phalanx of finger" EXACT [] xref: SCTID:182006002 is_a: UBERON:0004409 ! distal epiphysis of phalanx of manus is_a: UBERON:0011979 ! epiphysis of distal phalanx of manus is_a: UBERON:0014887 ! distal epiphysis of distal phalanx of digit [Term] id: UBERON:0014887 name: distal epiphysis of distal phalanx of digit def: "A distal epiphysis that is part of a distal phalanx." [OBOL:automatic] synonym: "distal end of distal phalanx of digit" EXACT [] synonym: "head of distal phalanx" EXACT [] synonym: "head of distal phalanx of digit" EXACT [] synonym: "head of distal phalanx of digit of autopod" EXACT [] is_a: UBERON:0004448 ! distal epiphysis of phalanx relationship: part_of UBERON:0004300 ! distal phalanx [Term] id: UBERON:0014888 name: iliotibialis muscle def: "A muscle in amphibians that connects originates in the ilium and inserts in the tibia." [ISBN:0073040584] synonym: "iliotibilias" BROAD [] synonym: "m. iliotibilias" EXACT [] is_a: UBERON:0003663 ! hindlimb muscle [Term] id: UBERON:0014889 name: left hemisphere of cerebellum def: "A cerebellar hemisphere that is in_the_left_side_of a cerebellum." [OBOL:automatic] subset: pheno_slim xref: FMA:83877 is_a: UBERON:0002245 ! cerebellar hemisphere property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014890 name: right hemisphere of cerebellum def: "A cerebellar hemisphere that is in_the_right_side_of a cerebellum." [OBOL:automatic] subset: pheno_slim xref: FMA:83876 is_a: UBERON:0002245 ! cerebellar hemisphere property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014891 name: brainstem white matter def: "White matter that is part of a brainstem [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "brain stem white matter" RELATED [EMAPA:35189] synonym: "brainstem tract/commissure" RELATED [] synonym: "brainstem tracts" RELATED [] synonym: "brainstem tracts and commissures" RELATED [] xref: EMAPA:35189 xref: FMA:282112 xref: MA:0002741 xref: SCTID:360442003 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0014892 name: skeletal muscle organ, vertebrate def: "A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles)." [GOC:dos] subset: human_reference_atlas synonym: "skeletal muscle" BROAD [] xref: AAO:0011099 xref: BTO:0001103 xref: CALOHA:TS-0933 xref: EFO:0000888 xref: EHDAA:5035 xref: EHDAA:5043 xref: EHDAA:5978 xref: EHDAA:5984 xref: EMAPA:35988 xref: EV:0100377 xref: GAID:141 xref: MA:0003148 xref: MAT:0000302 xref: MESH:D018482 xref: MIAA:0000302 xref: TAO:0005277 xref: VHOG:0000319 xref: XAO:0000174 xref: ZFA:0005277 is_a: UBERON:0001630 ! muscle organ relationship: develops_from UBERON:0003082 ! myotome relationship: part_of UBERON:0018254 ! skeletal musculature relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014895 name: somatic muscle, invertebrate def: "A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures." [GOC:DOS] synonym: "skeletal muscle" RELATED [FBbt:00005073] xref: HAO:0001922 is_a: UBERON:0005090 ! muscle structure relationship: never_in_taxon NCBITaxon:7742 relationship: part_of UBERON:0007095 ! somatic musculature relationship: present_in_taxon NCBITaxon:50557 property_value: external_definition "The muscle that is attached at either end to the cuticle[HAO]." xsd:string {source="HAO:0001922", source="http://api.hymao.org/api/ref/67791"} [Term] id: UBERON:0014896 name: transversely striated somatic muscle def: "A somatic muscle that consists of one or more somatic muscle myotubes and any associated extracellular structures." [GOC:DOS] is_a: UBERON:0014895 ! somatic muscle, invertebrate [Term] id: UBERON:0014897 name: obliquely striated somatic muscle def: "A somatic muscle that consists of one or more obliquely striated muscle cells and any associated extracellular structures." [GOC:DOS] is_a: UBERON:0014895 ! somatic muscle, invertebrate [Term] id: UBERON:0014898 name: lamina terminalis of ischium def: "In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area." [AAO:0000881, AAO:LAP] xref: AAO:0000881 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001274 {source="AAO"} ! ischium [Term] id: UBERON:0014899 name: anterolateral ligament of knee def: "A ligament on the lateral aspect of the human knee, anterior to the fibular collateral ligament." [DOI:10.1111/joa.12087, Wikipedia:Anterolateral_ligament] synonym: "(mid-third) lateral capsular ligament" EXACT [DOI:10.1111/joa.12087] synonym: "ALL" EXACT OMO:0003000 [DOI:10.1111/joa.12087] synonym: "anterolateral ligament" EXACT [DOI:10.1111/joa.12087] synonym: "capsulo-osseous layer of the iliotibial band" EXACT [DOI:10.1111/joa.12087] synonym: "ligament of Segond" EXACT [DOI:10.1111/joa.12087] xref: Wikipedia:Anterolateral_ligament is_a: UBERON:0011088 ! ligament of knee joint [Term] id: UBERON:0014903 name: primordial vasculature def: "A portion of tissue that will develop into vasculature." [ZFA:0005076, ZFA:curator] xref: EFO:0003708 xref: TAO:0005076 xref: ZFA:0005076 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0011695 ! embryonic cardiovascular system [Term] id: UBERON:0014904 name: intersegmental pulmonary vein def: "A vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97310] subset: human_reference_atlas synonym: "infrasegmental part" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] synonym: "infrasegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] synonym: "intersegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] synonym: "intersegmental vein" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] synonym: "partes intersegmentales venarum pulmonum" EXACT OMO:0003011 [http://www.medilexicon.com/medicaldictionary.php?s=partes+intersegmentales+venarum+pulmonum] xref: FMA:76965 is_a: UBERON:0002016 {source="FMA"} ! pulmonary vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0014907 name: intersomitic vessel def: "One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites." [MGI:anna] subset: pheno_slim synonym: "intersegmental vessel" EXACT [ZFA:0001285] synonym: "intersegmental vessels" EXACT OMO:0003004 [ZFA:0001285] synonym: "intersomitic blood vessel" EXACT [XAO:0004075] synonym: "intersomitic vessels" EXACT OMO:0003004 [ZFA:0001285] synonym: "segmental vessel" EXACT [ZFA:0001285] xref: EFO:0003664 xref: EMAPA:37389 {source="MA:th"} xref: TAO:0001285 xref: XAO:0004075 xref: ZFA:0001285 is_a: UBERON:0001981 {source="ZFA"} ! blood vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0005805 {source="ZFA"} ! dorsal aorta property_value: external_definition "Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these don't have venous or arterial markers[ZFA:0001285, ZFIN:ZDB-PUB-030908-4]." xsd:string {source="ZFA:0001285, ZFIN:ZDB-PUB-030908-4"} [Term] id: UBERON:0014908 name: cerebellopontine angle def: "Junction between the cerebellum and the pons." [MESH:A08.186.211.132.810.428.200.462] synonym: "angulus cerebellopontinus" RELATED OMO:0003011 [NeuroNames:544] synonym: "cerebellopontile angle" RELATED [MESH:A08.186.211.132.810.428.200.462] synonym: "cerebellopontine angle" RELATED [MESH:A08.186.211.132.810.428.200.462, NeuroNames:544] xref: FMA:84358 xref: MESH:D002530 xref: NCIT:C54057 xref: neuronames:544 xref: SCTID:369037007 xref: Wikipedia:Cerebellopontine_angle is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0014912 name: thalamic eminence synonym: "eminentia thalami" EXACT OMO:0003011 [ZFA:0007010] synonym: "EMT" BROAD OMO:0003000 [PMID:23375746] xref: FMA:295507 xref: TAO:0007010 xref: XAO:0004301 xref: ZFA:0007010 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010225 ! thalamic complex property_value: external_definition "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development[ZFIN:curator]." xsd:string {source="ZFIN:curator"} [Term] id: UBERON:0014913 name: ventral pallium def: "The pallial region located next to the pallium-subpallium boundary." [DOI:10.1371/journal.pone.0044716] synonym: "VP" BROAD OMO:0003000 [PMID:23375746] xref: DMBA:15904 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014914 name: haemolymphatic fluid-testis barrier def: "A barrier between the blood or haemolymphatic fluid and the testes." [http://orcid.org/0000-0002-6601-2165] synonym: "blood testis barrier" NARROW [PMID:864819] xref: Wikipedia:Blood-testis_barrier is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0014915 name: genu of facial nerve def: "The bend in the facial nerve at the lateral end of the internal acoustic meatus." [http://medical-dictionary.thefreedictionary.com/genu+of+facial+nerve] subset: pheno_slim synonym: "first genu" BROAD [FMA:72510] synonym: "first genu" RELATED [NeuroNames:581] synonym: "genu internum n. faciales" RELATED OMO:0003011 [NeuroNames:581] synonym: "genu nervi facialis" EXACT [FMA:TA] synonym: "genu nervi facialis" RELATED OMO:0003011 [NeuroNames:581] synonym: "genu of facial nerve" RELATED [NeuroNames:581] synonym: "genu of the facial nerve" RELATED [NeuroNames:581] synonym: "internal genu" RELATED [NeuroNames:581] synonym: "internal genu of facial nerve" NARROW [FMA:72510] synonym: "internal genu of facial nerve" RELATED [NeuroNames:581] synonym: "internal genu of the facial nerve" RELATED [NeuroNames:581] synonym: "nervus facialis (genu)" RELATED OMO:0003011 [NeuroNames:581] xref: DHBA:12738 xref: EMAPA:37870 {source="MA:th"} xref: FMA:72510 xref: MBA:1116 xref: neuronames:581 is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0014916 name: velar vocal fold def: "On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas." [DOI:10.1016/j.cub.2013.10.069] comment: Muscle notes: Because the larynx is attached to the caudal end of the pharynx where the IPO is situated, laryngeal retraction brought about by the sternothyroid muscle will automatically put tension on the rostro-caudally oriented velar vocal folds, and could also induce length changes of the folds. Contractions of the palatopharyngeal muscles may also influence the length and shape of the velar vocal folds directly (inducing width changes of the IPO). is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0034681 ! vocal organ relationship: part_of UBERON:0001733 ! soft palate relationship: present_in_taxon NCBITaxon:38625 [Term] id: UBERON:0014917 name: pouch sphincter def: "A sphincter muscle that is part of a pouch. The pouch sphincter serves to keep the young from falling out." [Wikipedia:Koala#Description] is_a: UBERON:0004590 ! sphincter muscle relationship: part_of UBERON:0009118 ! marsupium [Term] id: UBERON:0014918 name: retrosplenial granular cortex subset: pheno_slim synonym: "retrosplenial area, ventral part" RELATED [NeuroNames:1802] synonym: "retrosplenial cortex, ventral part" RELATED [NeuroNames:1802] synonym: "retrosplenial granular area" RELATED [NeuroNames:1802] synonym: "retrosplenial granular cortex" RELATED [NeuroNames:1802] synonym: "ventral part of the retrosplenial area" RELATED [NeuroNames:1802] xref: EMAPA:37947 {source="MA:th"} xref: MBA:886 xref: neuronames:1802 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0013531 ! retrosplenial region [Term] id: UBERON:0014930 name: perivascular space def: "The space between a blood vessel and the pia mater." [DOI:10.1007/s11064-015-1581-6, ncithesaurus:Perivascular_Space] comment: VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brain's arteries, as no leptomeningeal layers surround the brain's veins[WP] subset: pheno_slim synonym: "perivascular region" EXACT [] synonym: "perivascular spaces" RELATED OMO:0003004 [] synonym: "Virchow-Robin space" EXACT [Wikipedia:Virchow-Robin_space] synonym: "VRS" BROAD OMO:0003000 [Wikipedia:Virchow-Robin_space] xref: NCIT:C83196 xref: SCTID:342298001 xref: UMLS:C0225983 xref: Wikipedia:Virchow-Robin_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0010743 ! meningeal cluster property_value: depiction "https://static-content.springer.com/image/art%3A10.1007%2Fs11064-015-1581-6/MediaObjects/11064_2015_1581_Fig3_HTML.gif" xsd:anyURI [Term] id: UBERON:0014931 name: periungual skin def: "A zone of skin adjacent to a nail or claw." [http://orcid.org/0000-0002-6601-2165] synonym: "periungual area" RELATED [] synonym: "periungual region" RELATED [] xref: SCTID:280418005 is_a: UBERON:0015249 ! digit skin [Term] id: UBERON:0014932 name: periventricular white matter xref: SCTID:37065005 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0014933 name: periventricular gray matter synonym: "periventricular grey matter" EXACT [] xref: SCTID:89530008 is_a: UBERON:0003528 ! brain gray matter [Term] id: UBERON:0014934 name: obsolete cerebral cortex mantle layer is_obsolete: true replaced_by: UBERON:0004040 [Term] id: UBERON:0014935 name: cerebral cortex marginal layer def: "Developing superficial cortical layer located just under the pia matter, develops from the marginal layer of the neural tube and becomes cortical layer I." [http://orcid.org/0000-0002-6601-2165, MP:0000792] synonym: "cerebral cortex marginal zone" RELATED [EMAPA:32713] synonym: "cortical marginal layer" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cortical marginal zone" EXACT [MP:0000792] synonym: "future cortical layer I" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "marginal zone" BROAD [PBA:294021774] synonym: "MZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN, MP:0000792] xref: EMAPA:17546 xref: EMAPA:32713 xref: PBA:294021774 is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004062 ! neural tube marginal layer relationship: part_of UBERON:0010403 ! brain marginal zone property_value: development_notes "in humans develops into cortical layer I" xsd:string property_value: external_ontology_notes "EMAPA temporally divides this into zone and layer. TODO - unify this with marginal layers in EHDAA2" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0014936 name: cerebral cortex ventricular layer synonym: "cerebral cortex ventricular zone" RELATED [EMAPA:32707] xref: EMAPA:17547 xref: EMAPA:32707 xref: MA:0003189 is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004060 ! neural tube ventricular layer [Term] id: UBERON:0014940 name: cerebral cortex subventricular zone synonym: "cerebral cortex subventricular zone" RELATED [] synonym: "SZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] xref: EMAPA:32704 xref: MA:0003188 is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004040 ! cortical intermediate zone [Term] id: UBERON:0014950 name: layer of developing cerebral cortex is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 {source="EMAPA"} ! cerebral cortex property_value: curator_notes "these layers primarily refer to the mammalian future neocortex" xsd:string [Term] id: UBERON:0014951 name: proisocortex def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] synonym: "intermediate belt" RELATED [NeuroNames:2311] synonym: "juxtallocortex" RELATED [NeuroNames:2311] synonym: "periisocortical belt" RELATED [NeuroNames:2311] synonym: "proisocortex" RELATED [NeuroNames:2311] synonym: "proisocortical belt" RELATED [NeuroNames:2311] xref: neuronames:2311 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0015001 name: radius endochondral element def: "The major preaxial endrochondral skeletal element in the anterior zeugopod." [https://github.com/obophenotype/uberon/issues/70, UBERON:mah] synonym: "radius element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "radius skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0015002 name: radius-ulna endochondral element def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "radius-ulna element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "radius-ulna skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0015003 name: ulna endochondral element def: "Major postaxial endrochondral skeletal element in the anterior zeugopod." [https://github.com/obophenotype/uberon/issues/70, UBERON:mah] comment: The corresponding element in the posterior fin/limb is the fibula. synonym: "ulna element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ulna skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0015004 name: tibia endochondral element def: "The major preaxial endochondral element in the posterior zeugopod[Phenoscape]." [https://github.com/obophenotype/uberon/issues/71, PHENOSCAPE:mah] synonym: "tibia element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tibia skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:0015007 name: cervical vertebra endochondral element def: "A vertebral endochondral element in the cervical region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] synonym: "cervical vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "cervical vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010913 ! vertebral element relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: UBERON:0015008 name: thoracic vertebra endochondral element def: "A vertebral endochondral element in the thoracic region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] synonym: "thoracic vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "thoracic vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0010913 ! vertebral element relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: UBERON:0015009 name: lumbar vertebra endochondral element def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "lumbar vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "lumbar vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005173 ! abdominal segment element is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010913 ! vertebral element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] id: UBERON:0015010 name: sacral vertebra endochondral element def: "A vertebra endochondral element that is part of the sacral region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] synonym: "sacral vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sacral vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010913 ! vertebral element relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0015011 name: tibiotarsus endochondral element def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tibiotarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tibiotarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element [Term] id: UBERON:0015012 name: tarsometatarsus endochondral element def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tarsometatarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tarsometatarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0001445 ! skeleton of pes [Term] id: UBERON:0015013 name: fibula endochondral element def: "The major postaxial endochondral element in the posterior zeugopod[Phenoscape]." [https://github.com/obophenotype/uberon/issues/73, PHENOSCAPE:mah] synonym: "fibula element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "fibula skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:0015014 name: calcaneum endochondral element def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "calcaneum element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "calcaneum skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015050 ! tarsus endochondral element [Term] id: UBERON:0015015 name: supraoccipital endochondral element def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "supraoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "supraoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region [Term] id: UBERON:0015016 name: stapes endochondral element def: "A stapes bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "stapes element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "stapes skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0015017 name: incus endochondral element def: "An incus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "incus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "incus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0015018 name: malleus endochondral element def: "A malleus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus" RELATED [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0015019 name: rib endochondral element def: "A rib bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "rib element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "rib skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0014478 ! rib skeletal system property_value: taxon_notes "Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as 'true ribs', are directly attached to the sternum through the costal cartilage. The following five sets are known as 'false ribs', three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals." xsd:string [Term] id: UBERON:0015020 name: obsolete otic capsule endochondral element is_obsolete: true replaced_by: UBERON:0004637 [Term] id: UBERON:0015021 name: forelimb endochondral element def: "A forelimb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "forelimb skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015061 ! limb endochondral element relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0015022 name: hindlimb endochondral element def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "hindlimb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015061 ! limb endochondral element relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] id: UBERON:0015023 name: phalanx endochondral element def: "A phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0012150 ! skeleton of digitopodium [Term] id: UBERON:0015024 name: manual digit phalanx endochondral element def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element is_a: UBERON:0015023 ! phalanx endochondral element relationship: part_of UBERON:0002389 ! manual digit relationship: part_of UBERON:0010688 ! skeleton of manual acropodium relationship: part_of UBERON:5102389 ! manual digit digitopodial skeleton [Term] id: UBERON:0015025 name: manual digit 1 phalanx endochondral element def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 1 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 1 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit I phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: part_of UBERON:0001463 ! manual digit 1 relationship: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton [Term] id: UBERON:0015026 name: manual digit 2 phalanx endochondral element def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 2 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 2 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit II phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: part_of UBERON:0003622 ! manual digit 2 relationship: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton [Term] id: UBERON:0015027 name: manual digit 3 phalanx endochondral element def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 3 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 3 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit III phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: part_of UBERON:0003623 ! manual digit 3 relationship: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton [Term] id: UBERON:0015028 name: manual digit 4 phalanx endochondral element def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 4 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 4 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit IV phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: part_of UBERON:0003624 ! manual digit 4 relationship: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton [Term] id: UBERON:0015029 name: manual digit 5 phalanx endochondral element def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 5 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 5 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit V phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: part_of UBERON:0003625 ! manual digit 5 relationship: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton [Term] id: UBERON:0015030 name: pedal digit phalanx endochondral element def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element is_a: UBERON:0015023 ! phalanx endochondral element relationship: part_of UBERON:0001466 ! pedal digit relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium relationship: part_of UBERON:5101466 ! pedal digit digitopodial skeleton [Term] id: UBERON:0015031 name: pedal digit 1 phalanx endochondral element def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 1 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 1 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit I phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: part_of UBERON:0003631 ! pedal digit 1 relationship: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton [Term] id: UBERON:0015032 name: pedal digit 2 phalanx endochondral element def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 2 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 2 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit II phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: part_of UBERON:0003632 ! pedal digit 2 relationship: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton [Term] id: UBERON:0015033 name: pedal digit 3 phalanx endochondral element def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 3 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 3 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit III phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: part_of UBERON:0003633 ! pedal digit 3 relationship: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton [Term] id: UBERON:0015034 name: pedal digit 4 phalanx endochondral element def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 4 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 4 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit IV phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: part_of UBERON:0003634 ! pedal digit 4 relationship: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton [Term] id: UBERON:0015035 name: pedal digit 5 phalanx endochondral element def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 5 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 5 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit V phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: part_of UBERON:0003635 ! pedal digit 5 relationship: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton [Term] id: UBERON:0015036 name: pedal digit metatarsal endochondral element def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium [Term] id: UBERON:0015037 name: pedal digit 1 metatarsal endochondral element def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 1 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 1 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit I metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton [Term] id: UBERON:0015038 name: pedal digit 2 metatarsal endochondral element def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 2 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 2 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit II metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton [Term] id: UBERON:0015039 name: pedal digit 3 metatarsal endochondral element def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 3 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 3 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit III metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton [Term] id: UBERON:0015040 name: pedal digit 4 metatarsal endochondral element def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 4 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 4 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit IV metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton [Term] id: UBERON:0015041 name: pedal digit 5 metatarsal endochondral element def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 5 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 5 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit V metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton [Term] id: UBERON:0015042 name: manual digit metacarpus endochondral element def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium [Term] id: UBERON:0015043 name: manual digit 1 metacarpus endochondral element def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 1 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 1 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit I metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton [Term] id: UBERON:0015044 name: manual digit 2 metacarpus endochondral element def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 2 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 2 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit II metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton [Term] id: UBERON:0015045 name: manual digit 3 metacarpus endochondral element def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 3 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 3 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit III metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton [Term] id: UBERON:0015046 name: manual digit 4 metacarpus endochondral element def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 4 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 4 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit IV metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton [Term] id: UBERON:0015047 name: manual digit 5 metacarpus endochondral element def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 5 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 5 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit V metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton [Term] id: UBERON:0015048 name: basioccipital endochondral element def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "basioccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "basioccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0005902 ! occipital region [Term] id: UBERON:0015049 name: carpus endochondral element def: "A carpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "carpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "carpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0015050 name: tarsus endochondral element def: "A tarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0015051 name: exoccipital endochondral element def: "An exoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "exoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "exoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region [Term] id: UBERON:0015052 name: femur endochondral element def: "A femur bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "femur element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "femur skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0015053 name: humerus endochondral element def: "A humerus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "humerus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "humerus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0015054 name: iliac endochondral element def: "An iliac bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "iliac element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "iliac skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:0015055 name: pubic endochondral element def: "A pubic bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pubic element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pubic skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:0015056 name: ischial endochondral element def: "An ischial bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ischial element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ischial skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:0015057 name: scapula endochondral element def: "A scapula bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "scapula element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "scapula skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] id: UBERON:0015058 name: alisphenoid endochondral element def: "An alisphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "alisphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "alisphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0008895 ! splanchnocranium [Term] id: UBERON:0015059 name: orbitosphenoid endochondral element def: "An orbitosphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "orbitosphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "orbitosphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0003111 ! sphenoid region [Term] id: UBERON:0015060 name: sphenoid endochondral element def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sphenoid bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011156 ! facial skeleton [Term] id: UBERON:0015061 name: limb endochondral element def: "A limb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "limb bone endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "limb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0004381 ! skeleton of limb [Term] id: UBERON:0015062 name: bone condensation def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] xref: AEO:0000213 is_a: UBERON:0005856 {source="AEO"} ! developing mesenchymal condensation relationship: part_of UBERON:0004288 {source="AEO"} ! skeleton [Term] id: UBERON:0015063 name: autopod endochondral element def: "An endochondral element that is part of a autopod region." [OBOL:automatic] is_a: UBERON:0015061 ! limb endochondral element relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern relationship: part_of UBERON:0006717 {source="cjm"} ! autopodial skeleton [Term] id: UBERON:0015064 name: autopod cartilage def: "An autopod endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015063 ! autopod endochondral element relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern [Term] id: UBERON:0015067 name: centrale endochondral element def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] synonym: "central mesopodium element" EXACT [UBERON:0012131] synonym: "centralia" RELATED OMO:0003004 [UBERON:0012131] is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0009878 ! mesopodial skeleton property_value: curator_notes "This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus" xsd:string property_value: external_ontology_notes "the FMA term is under 'general anatomical term'." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0015068 name: distal carpal endochondral element def: "A distal mesopodial endochondral element that is part of a forelimb." [OBOL:automatic] synonym: "distal carpal" RELATED SYSTEMATIC [AAO:0000847, UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element is_a: UBERON:0018099 ! distal mesopodial endochondral element [Term] id: UBERON:0015069 name: distal carpal cartilage element def: "A distal carpal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015068 ! distal carpal endochondral element is_a: UBERON:0018100 ! distal mesopodial cartilage element is_a: UBERON:0035128 ! manus cartilage element [Term] id: UBERON:0015077 name: centrale cartilage def: "A centrale endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015064 ! autopod cartilage is_a: UBERON:0015067 ! centrale endochondral element [Term] id: UBERON:0015078 name: proximal carpal endochondral element def: "A proximal mesopodial endochondral element that is part of a forelimb." [OBOL:automatic] synonym: "proximal carpal" RELATED SYSTEMATIC [UBERON:cjm] synonym: "proximal carpal element" EXACT [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element is_a: UBERON:0017750 ! proximal mesopodial endochondral element [Term] id: UBERON:0015079 name: proximal carpal cartilage def: "A proximal carpal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015078 ! proximal carpal endochondral element is_a: UBERON:0017751 ! proximal mesopodial cartilage element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0015080 ! proximal carpal bone pre-cartilage condensation [Term] id: UBERON:0015080 name: proximal carpal bone pre-cartilage condensation def: "A proximal carpal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015078 ! proximal carpal endochondral element [Term] id: UBERON:0015081 name: proximal tarsal endochondral element def: "A proximal mesopodial endochondral element that is part of a hindlimb." [OBOL:automatic] synonym: "proximal tarsal" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015050 ! tarsus endochondral element is_a: UBERON:0017750 ! proximal mesopodial endochondral element [Term] id: UBERON:0015082 name: proximal tarsal cartilage def: "A proximal tarsal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015081 ! proximal tarsal endochondral element is_a: UBERON:0017751 ! proximal mesopodial cartilage element is_a: UBERON:0035129 ! pes cartilage element relationship: develops_from UBERON:0015083 ! proximal tarsal bone pre-cartilage condensation [Term] id: UBERON:0015083 name: proximal tarsal bone pre-cartilage condensation def: "A proximal tarsal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation is_a: UBERON:0015081 ! proximal tarsal endochondral element [Term] id: UBERON:0015084 name: distal carpal bone 1 endochondral element synonym: "distal carpal 1" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element [Term] id: UBERON:0015085 name: distal carpal bone 1 cartilage def: "A distal carpal bone 1 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0015086 ! distal carpal bone 1 pre-cartilage condensation [Term] id: UBERON:0015086 name: distal carpal bone 1 pre-cartilage condensation def: "A distal carpal bone 1 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element [Term] id: UBERON:0015087 name: distal carpal bone 2 endochondral element synonym: "distal carpal 2" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element [Term] id: UBERON:0015088 name: distal carpal bone 2 cartilage def: "A distal carpal bone 2 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0015089 ! distal carpal bone 2 pre-cartilage condensation [Term] id: UBERON:0015089 name: distal carpal bone 2 pre-cartilage condensation def: "A distal carpal bone 2 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element [Term] id: UBERON:0015090 name: distal carpal bone 3 endochondral element synonym: "distal carpal 3" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element [Term] id: UBERON:0015091 name: distal carpal bone 3 cartilage def: "A distal carpal bone 3 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0015092 ! distal carpal bone 3 pre-cartilage condensation [Term] id: UBERON:0015092 name: distal carpal bone 3 pre-cartilage condensation def: "A distal carpal bone 3 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element [Term] id: UBERON:0015093 name: distal carpal bone 4 endochondral element synonym: "distal carpal 4" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element [Term] id: UBERON:0015094 name: distal carpal bone 4 cartilage def: "A distal carpal bone 4 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0015095 ! distal carpal bone 4 pre-cartilage condensation [Term] id: UBERON:0015095 name: distal carpal bone 4 pre-cartilage condensation def: "A distal carpal bone 4 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element [Term] id: UBERON:0015096 name: distal carpal bone 5 endochondral element synonym: "distal carpal 5" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element [Term] id: UBERON:0015097 name: distal carpal bone 5 cartilage def: "A distal carpal bone 5 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element is_a: UBERON:0035128 ! manus cartilage element relationship: develops_from UBERON:0015098 ! distal carpal bone 5 pre-cartilage condensation [Term] id: UBERON:0015098 name: distal carpal bone 5 pre-cartilage condensation def: "A distal carpal bone 5 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element [Term] id: UBERON:0015099 name: distal tarsal endochondral element def: "A distal mesopodial endochondral element that is part of a hindlimb." [OBOL:automatic] synonym: "distal tarsal" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015050 ! tarsus endochondral element is_a: UBERON:0018099 ! distal mesopodial endochondral element [Term] id: UBERON:0015100 name: distal tarsal cartilage def: "A distal tarsal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015099 ! distal tarsal endochondral element is_a: UBERON:0018100 ! distal mesopodial cartilage element is_a: UBERON:0035129 ! pes cartilage element relationship: develops_from UBERON:0015101 ! distal tarsal bone pre-cartilage condensation [Term] id: UBERON:0015101 name: distal tarsal bone pre-cartilage condensation def: "A distal tarsal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation is_a: UBERON:0015099 ! distal tarsal endochondral element is_a: UBERON:0018101 ! distal mesopodial pre-cartilage condensation [Term] id: UBERON:0015102 name: distal tarsal bone 1 endochondral element synonym: "distal tarsal 1" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element [Term] id: UBERON:0015103 name: distal tarsal bone 1 cartilage def: "A distal tarsal bone 1 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "distal tarsal 1 cartilage" EXACT [UBERON:cjm] synonym: "distal tarsal 1 cartilage element" EXACT SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element relationship: develops_from UBERON:0015104 ! distal tarsal bone 1 pre-cartilage condensation [Term] id: UBERON:0015104 name: distal tarsal bone 1 pre-cartilage condensation def: "A distal tarsal bone 1 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element [Term] id: UBERON:0015105 name: distal tarsal bone 2 endochondral element synonym: "distal tarsal 2" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element [Term] id: UBERON:0015106 name: distal tarsal bone 2 cartilage def: "A distal tarsal bone 2 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] synonym: "distal tarsal 2 cartilage" EXACT [UBERON:cjm] synonym: "distal tarsal 2 cartilage element" EXACT SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element relationship: develops_from UBERON:0015107 ! distal tarsal bone 2 pre-cartilage condensation [Term] id: UBERON:0015107 name: distal tarsal bone 2 pre-cartilage condensation def: "A distal tarsal bone 2 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element [Term] id: UBERON:0015108 name: distal tarsal bone 3 endochondral element synonym: "distal tarsal 3" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element [Term] id: UBERON:0015109 name: distal tarsal bone 3 cartilage def: "A distal tarsal bone 3 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element relationship: develops_from UBERON:0015110 ! distal tarsal bone 3 pre-cartilage condensation [Term] id: UBERON:0015110 name: distal tarsal bone 3 pre-cartilage condensation def: "A distal tarsal bone 3 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element [Term] id: UBERON:0015111 name: distal tarsal bone 4 endochondral element synonym: "distal tarsal 4" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element [Term] id: UBERON:0015112 name: distal tarsal bone 4 cartilage def: "A distal tarsal bone 4 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element relationship: develops_from UBERON:0015113 ! distal tarsal bone 4 pre-cartilage condensation [Term] id: UBERON:0015113 name: distal tarsal bone 4 pre-cartilage condensation def: "A distal tarsal bone 4 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element [Term] id: UBERON:0015114 name: distal tarsal bone 5 endochondral element synonym: "distal tarsal 5" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element [Term] id: UBERON:0015115 name: distal tarsal bone 5 cartilage def: "A distal tarsal bone 5 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element relationship: develops_from UBERON:0015116 ! distal tarsal bone 5 pre-cartilage condensation [Term] id: UBERON:0015116 name: distal tarsal bone 5 pre-cartilage condensation def: "A distal tarsal bone 5 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element [Term] id: UBERON:0015117 name: lamina terminalis of cerebral hemisphere def: "The remnant of the lamina terminalis in the developed brain." [http://orcid.org/0000-0002-6601-2165] comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] synonym: "lamina terminalis" BROAD [FMA:61975] xref: DHBA:12105 xref: EHDAA:3500 xref: EHDAA:4498 xref: FMA:61975 xref: SCTID:361483008 xref: Wikipedia:Lamina_terminalis is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere relationship: immediate_transformation_of UBERON:0005078 ! lamina terminalis of neural tube relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter [Term] id: UBERON:0015118 name: obsolete neocortical column def: "A group of neurons in the cortex of the brain which can be successively penetrated by a probe inserted perpendicularly to the cortical surface, and which have nearly identical receptive fields." [Wikipedia:Cortical_column] synonym: "cortical column" BROAD [Wikipedia:Cortical_column] is_obsolete: true [Term] id: UBERON:0015119 name: scolex def: "The anterior organ of a tapeworm used for attachment to the host intestine." [BTO:0002305, http://tropmed.org/dictionary/, Wikipedia:Cestoda#Scolex] synonym: "holdfast" RELATED [BTO:0002305] synonym: "holdfast organ" RELATED [] synonym: "tapeworm head" RELATED [] xref: BTO:0002305 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0015120 name: right outer canthus def: "An outer canthus that is in_the_right_side_of a head." [OBOL:automatic] synonym: "lateral angle of right eye" RELATED [FMA:59317] synonym: "lateral canthus of right eye" RELATED [FMA:59317] synonym: "right angle of eye" EXACT [] synonym: "right lateral canthus" RELATED [FMA:59317] synonym: "right lateral palpebral commissure" EXACT [FMA:59317] xref: FMA:59317 is_a: UBERON:0006726 ! outer canthus property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0015121 name: left outer canthus def: "An outer canthus that is in_the_left_side_of a head." [OBOL:automatic] synonym: "lateral angle of left eye" RELATED [FMA:59318] synonym: "lateral canthus of left eye" RELATED [FMA:59318] synonym: "left angle of eye" EXACT [] synonym: "left lateral canthus" RELATED [FMA:59318] synonym: "left lateral palpebral commissure" EXACT [FMA:59318] xref: FMA:59318 is_a: UBERON:0006726 ! outer canthus property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0015122 name: anatomical line between outer canthi def: "An anatomical line of the face that connects the two outer (lateral) canthi of the eye. The length of this line is known as the outer canthal distance." [http://orcid.org/0000-0002-6601-2165] synonym: "inter lateral canthal line" EXACT [] synonym: "inter outer canthal line" EXACT [] is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0015125 name: anterior internodal tract def: "Internodal tract which consists of the atrial and atrial septal branches." [FMA:9480] synonym: "anterior internodal fasciculus" EXACT [FMA:9480] synonym: "anterior internodal tract muscle tissue" EXACT [FMA:9480] xref: FMA:9480 is_a: UBERON:0009966 {source="FMA"} ! internodal tract [Term] id: UBERON:0015126 name: middle internodal tract synonym: "internodal tract of Wenckebach" EXACT [FMA:9482] synonym: "middle internodal fasciculus" EXACT [FMA:9482] synonym: "middle internodal tract muscle tissue" EXACT [FMA:9482] xref: FMA:9482 is_a: UBERON:0009966 {source="FMA"} ! internodal tract [Term] id: UBERON:0015127 name: posterior internodal tract synonym: "internodal tract of Thorel" EXACT [FMA:9483] synonym: "posterior internodal fasciculus" EXACT [FMA:9483] synonym: "posterior internodal tract muscle tissue" EXACT [FMA:9483] xref: FMA:9483 is_a: UBERON:0009966 {source="FMA"} ! internodal tract [Term] id: UBERON:0015128 name: subepicardial layer of epicardium synonym: "perimysial connective tissue of subepicardium" EXACT [FMA:83105] synonym: "subepicardial connective tissue" EXACT [FMA:83105] xref: FMA:83105 is_a: UBERON:0007188 ! mesothelium of serous pericardium relationship: part_of UBERON:0002348 {source="FMA"} ! epicardium property_value: editor_note "consider merging into myocardial compact layer" xsd:string [Term] id: UBERON:0015129 name: epicardial fat def: "Visceral intrapericardial fat contiguous with the myocardial surface." [DOI:10.5935/abc.20130138] synonym: "epicardial adipose tissue" EXACT [] synonym: "pericardial adipose tissue" EXACT [] xref: FMA:9871 is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0035814 ! pericardial fat relationship: part_of UBERON:0015128 ! subepicardial layer of epicardium [Term] id: UBERON:0015130 name: connective tissue of prostate gland def: "A portion of connective tissue that is part of a prostate gland." [OBOL:automatic] synonym: "connective tissue of prostate" EXACT [FMA:74165] xref: FMA:74165 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0015131 name: subepithelial connective tissue of prostatic gland subset: human_reference_atlas xref: FMA:74189 is_a: UBERON:0015130 {source="FMA"} ! connective tissue of prostate gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015132 name: extralobar lactiferous duct xref: FMA:58069 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015133 name: terminal lactiferous duct synonym: "branch of lactiferous duct proper" EXACT [FMA:58260] synonym: "lobular lactiferous duct" EXACT [FMA:58260] xref: FMA:58260 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015134 name: main lactiferous duct xref: FMA:62102 is_a: UBERON:0001765 {source="FMA"} ! mammary duct property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI [Term] id: UBERON:0015135 name: primary lactiferous duct xref: FMA:74428 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015136 name: secondary lactiferous duct xref: FMA:74430 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015137 name: tertiary lactiferous duct xref: FMA:74431 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015138 name: quarternary lactiferous duct xref: FMA:74432 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015139 name: infundibulum of gallbladder def: "The tapering portion of the gall bladder that narrows to form the neck and cystic duct." [MP:0009465] subset: pheno_slim synonym: "gallbladder infundibulum" EXACT [FMA:76652] synonym: "infundibulum vesicae biliaris" EXACT OMO:0003011 [MP:0009465] xref: FMA:76652 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002110 {source="FMA"} ! gallbladder [Term] id: UBERON:0015142 name: falciform fat def: "A large fat pad that is located at the base of the abdominal wall, in the falciform ligament of the liver." [MURDOCH:768] synonym: "falciform fat depot" RELATED [] synonym: "falciform ligament fat pad" RELATED [] is_a: UBERON:0003427 ! abdominal fat pad is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015143 ! mesenteric fat pad relationship: part_of UBERON:0001247 ! falciform ligament [Term] id: UBERON:0015143 name: mesenteric fat pad def: "Encapsulated adipose tissue associated with the mesentery." [MP:0008903] synonym: "mesenteric fat depot" EXACT [MP:0008903] is_a: UBERON:0003916 ! fat pad relationship: part_of UBERON:0002095 ! mesentery [Term] id: UBERON:0015144 name: autopod hair def: "A strand of hair that is part of a autopod region." [OBOL:automatic] synonym: "hair of hand/foot" EXACT [] synonym: "hand/foot hair" EXACT [] synonym: "paw hair" NARROW [] is_a: UBERON:0037459 ! hair of limb relationship: part_of UBERON:0002470 ! autopod region [Term] id: UBERON:0015145 name: pes hair def: "A strand of hair that is part of a pes." [OBOL:automatic] synonym: "foot hair" EXACT [] synonym: "hair of foot" EXACT [] synonym: "hind foot hair" EXACT [] synonym: "hind paw hair" NARROW [] is_a: UBERON:0015144 ! autopod hair relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0015146 name: manus hair def: "A strand of hair that is part of a manus." [OBOL:automatic] synonym: "front paw hair" NARROW [] synonym: "hair of hand" EXACT [] synonym: "hand hair" EXACT [] is_a: UBERON:0015144 ! autopod hair relationship: part_of UBERON:0002398 ! manus [Term] id: UBERON:0015147 name: pinna hair def: "A strand of hair that is part of a pinna." [OBOL:automatic] subset: pheno_slim synonym: "ear hair" RELATED [] is_a: UBERON:0022279 ! strand of hair on external ear relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0015148 name: tail hair def: "A strand of hair that is part of a tail." [OBOL:automatic] subset: pheno_slim xref: EMAPA:37971 {source="MA:th"} is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:0015149 name: ventral hair def: "A strand of hair that is part of a ventrum." [OBOL:automatic] synonym: "ventral coat hair" RELATED [] is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0013235 ! ventrum [Term] id: UBERON:0015150 name: dorsal hair def: "A strand of hair that is part of a dorsum." [OBOL:automatic] synonym: "back hair" RELATED [] synonym: "dorsal coat hair" RELATED [] synonym: "hair of back" RELATED [FMA:54320] xref: FMA:54320 is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001137 ! dorsum [Term] id: UBERON:0015151 name: Harderian gland duct def: "A duct that is part of a Harderian gland. opens into the conjunctival sac at the base of the nictitating membrane." [PMID:7559104] synonym: "duct of Harder's gland" EXACT [] synonym: "duct of Harderian gland" EXACT [] synonym: "Harderian duct" RELATED [] is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0004187 ! Harderian gland property_value: taxon_notes "Typically a single duct per gland, but Harderian glands can have more than 1 duct, e.g. in lizards, amphisbaenids and primitive snakes (Bellairs & Boyd, 1947) and possibly some avian species (Burns, 1992)" xsd:string [Term] id: UBERON:0015152 name: gland of ocular region def: "A gland that is typically found in or near the orbital region, in or around either the medial or lateral canthi, and is typically associated with secretions onto the eyeball or associated ducts. Includes the Harderian, nictitans and lacrimal glands." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/614] synonym: "ocular gland" EXACT [] synonym: "orbital gland" RELATED [] is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0035639 {source="inferred"} ! ocular adnexa property_value: taxon_notes "the only orbital gland found in anuran amphibians is either the Harderian or the lacrimal; if it is a lacrimal, then a progressive lateral migration of the lacrimal glands must occur through the amniotes[PMID:7559104]" xsd:string property_value: taxon_notes "the only orbital gland found in anuran amphibians is the Harderian[PMID:8843648]" xsd:string [Term] id: UBERON:0015153 name: medial gland of ocular region def: "A gland that is located in the ocular region, nearer the inner canthi. Typically associated with or part of the nictitating membrane, when present." [PMID:7559104] synonym: "Harderian gland" NARROW [] synonym: "medial ocular gland" EXACT [] synonym: "medial orbital gland" EXACT [] is_a: UBERON:0015152 ! gland of ocular region property_value: taxon_notes "Rabbits, pigs and Mongolian gerbils have both a Harderian and a nictitans gland[ISBN:1118473523]" xsd:string property_value: taxon_notes "the distinction between Harderian and nictitans gland is only valid in mammals - the medial ocular glands in other terapods are called Harderian glands regardless of their secretion[DOI:10.1007/978-3-642-76685-5_2]" xsd:string [Term] id: UBERON:0015154 name: lateral gland of orbital region def: "A gland that is located in or around the ocular region, nearer the outer canthi." [http://orcid.org/0000-0002-6601-2165] synonym: "lateral ocular gland" EXACT [] synonym: "lateral orbital gland" EXACT [] is_a: UBERON:0015152 ! gland of ocular region property_value: curator_notes "The class name or definition should not be taken to mean strictly in the lateral ocular region. We place the extraocular lacrimal glands, even though they are as the name suggests outside the ocular region. The class exists as the division between lateral vs medial (Harderian, nictitans) glands is standard, e.g. http://www.ncbi.nlm.nih.gov/pubmed/7559104" xsd:string [Term] id: UBERON:0015155 name: conjunctival space def: "An anatomical space that is enclosed by a conjunctiva." [OBOL:automatic] synonym: "cavity of conjunctival sac" EXACT [FMA:59083] synonym: "conjunctival sac cavity" EXACT [FMA:59083] synonym: "subbrillar space" NARROW [NCBITaxon:8570, PMID:7559104] synonym: "subconjunctival space" EXACT [] xref: FMA:59083 xref: SCTID:280957009 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005908 {source="FMA"} ! conjunctival sac [Term] id: UBERON:0015156 name: terminal branch of ophthalmic artery def: "The two terminal branches of the ophthalmic artery in humans are the dorsal nasal artery and the supratrochlear artery." [Wikipedia:Dorsal_nasal_artery, Wikipedia:Supratrochlear_artery] xref: FMA:51956 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0015157 name: zygomatico-orbital artery def: "The middle temporal artery occasionally gives off a zygomatico-orbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. This branch, which may arise directly from the superficial temporal artery, supplies the Orbicularis oculi, and anastomoses with the lacrimal and palpebral branches of the ophthalmic artery." [Wikipedia:Zygomatico-orbital_artery] subset: human_reference_atlas synonym: "zygomaticooerbital branch" RELATED [Wikipedia:Zygomatico-orbital_artery] synonym: "zygomaticoorbital branch" RELATED [Wikipedia:Zygomatico-orbital_artery] xref: FMA:49663 xref: SCTID:146753008 xref: Wikipedia:Zygomatico-orbital_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015158 name: ophthalmotemporal branch of external ophthalmic artery comment: The blood supply to the (Harderian) gland has been reported in greatest detail in the sparrow Passer domesticus (Slonaker, 1918), where it is derived through the ophthalmotemporal branch of the external ophthalmic artery http://www.ncbi.nlm.nih.gov/pubmed/7559104 synonym: "ophthalmotemporal artery" RELATED [] is_a: UBERON:0001637 ! artery [Term] id: UBERON:0015160 name: supraorbital artery def: "The supraorbital artery is an artery of the head. It springs from the ophthalmic artery as that vessel is crossing over to the medial side of the optic nerve." [Wikipedia:Supraorbital_artery] subset: human_reference_atlas synonym: "arteria supraorbitalis" EXACT OMO:0003011 [Wikipedia:Supraorbital_artery] synonym: "supra-orbital artery" EXACT [FMA:49973] synonym: "supraorbital artery" EXACT [FMA:49973] synonym: "supraorbital branch of external ophthalmic artery" RELATED [] xref: FMA:49973 xref: SCTID:369330002 xref: Wikipedia:Supraorbital_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015161 name: inferior branch of oculomotor nerve def: "The inferior branch of the oculomotor nerve or the inferior division, the larger, divides into three branches. One passes beneath the optic nerve to the medial rectus. Another, to the inferior rectus. The third and longest runs forward between the inferior recti and lateralis to the inferior oblique. From the last a short thick branch is given off to the lower part of the ciliary ganglion, and forms its short root. All these branches enter the muscles on their ocular surfaces, with the exception of the nerve to the inferior oblique, which enters the muscle at its posterior border." [Wikipedia:Inferior_branch_of_oculomotor_nerve] synonym: "inferior division of oculomotor nerve" RELATED [FMA:52573] synonym: "inferior ramus of oculomotor nerve" EXACT [FMA:52573] synonym: "oculomotor nerve inferior division" EXACT [FMA:52573] synonym: "ramus inferior (nervus oculomotorius [III])" EXACT [FMA:52573] synonym: "ramus inferior nervi oculomotorii" EXACT OMO:0003011 [Wikipedia:Inferior_branch_of_oculomotor_nerve] synonym: "ramus inferior nervus oculomotorii" EXACT OMO:0003011 [FMA:52573, FMA:TA] synonym: "ventral ramus of occulomotor nerve" RELATED [AAO:0010632] synonym: "ventral ramus of oculomotor nerve" RELATED [AAO:0010632] xref: AAO:0010632 xref: FMA:52573 xref: neuronames:2232 xref: SCTID:280206003 xref: Wikipedia:Inferior_branch_of_oculomotor_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0015162 name: superior branch of oculomotor nerve def: "The superior branch of the oculomotor nerve or the superior division, the smaller, passes medialward over the optic nerve. It supplies the Superior rectus and Levator palpebrae superioris." [Wikipedia:Superior_branch_of_oculomotor_nerve] synonym: "dorsal ramus of occulomotor nerve" RELATED [AAO:0010628] synonym: "dorsal ramus of oculomotor nerve" RELATED [AAO:0010628] synonym: "oculomotor nerve superior division" EXACT [FMA:52572] synonym: "ramus superior (nervus oculomotorius [III])" EXACT [FMA:52572] synonym: "ramus superior nervi oculomotorii" EXACT OMO:0003011 [Wikipedia:Superior_branch_of_oculomotor_nerve] synonym: "ramus superior nervus oculomotorii" EXACT OMO:0003011 [FMA:52572, FMA:TA] synonym: "superior division of oculomotor nerve" RELATED [FMA:52572] synonym: "superior ramus of oculomotor nerve" EXACT [FMA:52572] xref: AAO:0010628 xref: FMA:52572 xref: SCTID:280205004 xref: Wikipedia:Superior_branch_of_oculomotor_nerve is_a: UBERON:0003437 ! eyelid nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0015165 name: multi-unit eye def: "An eye consisting of multiple light-sensing organs." [http://orcid.org/0000-0002-6601-2165, PMID:21062451] is_a: UBERON:0000970 ! eye relationship: never_in_taxon NCBITaxon:7742 relationship: present_in_taxon NCBITaxon:6340 {notes="present on tentacular crown", source="PMID:21062451"} relationship: present_in_taxon NCBITaxon:6544 {notes="present on mantle edge in arcacean Bivalvia", source="PMID:21062451"} relationship: present_in_taxon NCBITaxon:7588 {notes="The eyes (optic cushions) on the oral surface of Asteroida (Echinodermata), close to the base of the terminal tentacles, are also composed of a number of simple ocelli - as many as 80-200 in certain species", source="PMID:21062451"} [Term] id: UBERON:0015169 name: tapetum def: "Light reflecting layer found in a variety of different types of eye." [http://orcid.org/0000-0002-6601-2165] subset: functional_classification synonym: "tapetal layer" EXACT [] synonym: "tapetum layer" EXACT [] xref: BTO:0001350 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SPD:0000343 is_a: UBERON:0000957 ! lamina relationship: never_in_taxon NCBITaxon:8782 {editor="cjm", source="PMID:14738502"} relationship: never_in_taxon NCBITaxon:9321 {editor="cjm", source="PMID:14738502"} relationship: never_in_taxon NCBITaxon:9443 {editor="cjm", source="PMID:14738502"} relationship: never_in_taxon NCBITaxon:9606 relationship: never_in_taxon NCBITaxon:9822 {editor="cjm", source="PMID:14738502"} relationship: part_of UBERON:0000970 ! eye property_value: has_relational_adjective "tapetal" xsd:string [Term] id: UBERON:0015170 name: nauplius eye def: "An eye that consists of a cluster of three or four median eyes that form a single structural unit but are separated from one another by pigment layers." [PMID:21062451] synonym: "four-partite eye" NARROW [PMID:21062451] synonym: "three-partite eye" NARROW [PMID:21062451] is_a: UBERON:0000970 ! eye [Term] id: UBERON:0015171 name: uterine spiral artery def: "A corkscrew-like artery in premenstrual or progestational endometrium; uterine spiral arteries play a vital role in supplying nutrients to the placenta and fetus, and are thus remodeled into highly dilated inelastic vessels by the action of invading trophoblast (physiological change)." [J:100668, J:117841, MGI:anna, MP:0012726] subset: human_reference_atlas subset: pheno_slim synonym: "endometrial spiral arteriole" EXACT [] synonym: "endometrial spiral artery" EXACT [BTO:0003371] synonym: "spiral arteries" RELATED OMO:0003004 [] synonym: "spiral artery" BROAD [BTO:0003371] synonym: "spiral artery" RELATED [] xref: BTO:0003371 xref: EMAPA:36612 xref: NCIT:C33592 xref: SCTID:24628006 xref: UMLS:C1519470 xref: Wikipedia:Spiral_artery is_a: UBERON:0001637 {source="BTO"} ! artery is_a: UBERON:0015172 ! endometrial blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "In women, rats and mice, the endometrial vessels are coiled and known as spiral arteries[PMID:16413937]." xsd:string {source="PMID:16413937"} [Term] id: UBERON:0015172 name: endometrial blood vessel def: "A blood vessel that is part of a endometrium." [OBOL:automatic] subset: human_reference_atlas synonym: "blood vessel of endometrium" EXACT [] xref: SCTID:254200009 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001295 ! endometrium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015173 name: helicine branch of uterine artery def: "The helicine branches of uterine artery (or helicine arterioles, or spiral arteries) are small arteries which temporarily supply the endometrium of the uterus during the luteal phase of the menstrual cycle. In histology, identifying the presence of these arteries is one of the most useful techniques in identifying the phase of the cycle." [Wikipedia:Helicine_branches_of_uterine_artery] comment: Notes: The straight branches of the radial arteries of the uterus terminate in capillaries in the basal layer, while the spiral or coiled branches penetrate to the surface epithelium subset: human_reference_atlas synonym: "arcuate artery of uterus" EXACT [] synonym: "helicine arteriole" RELATED INCONSISTENT [Wikipedia:Helicine_branches_of_uterine_artery] synonym: "helicine artery of uterus" EXACT [FMA:21101] synonym: "rami helicini uterinae" EXACT OMO:0003011 [Wikipedia:Helicine_branches_of_uterine_artery] synonym: "spiral arteries" RELATED INCONSISTENT [Wikipedia:Helicine_branches_of_uterine_artery] synonym: "spiral artery" RELATED INCONSISTENT [Wikipedia:Helicine_branches_of_uterine_artery] xref: FMA:21101 xref: Wikipedia:Helicine_branches_of_uterine_artery is_a: UBERON:0015177 ! helicine artery relationship: part_of UBERON:0001296 ! myometrium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015174 name: helicine artery of penis def: "The helicine arteries of penis are arteries in the penis. They are found in the corpora cavernosa penis. They are involved in the process of erection." [Wikipedia:Helicine_arteries_of_penis] subset: human_reference_atlas synonym: "arteriae helicinae penis" EXACT OMO:0003011 [Wikipedia:Helicine_arteries_of_penis] synonym: "helicine arteries" RELATED OMO:0003004 [] xref: FMA:19796 xref: SCTID:279924008 xref: Wikipedia:Helicine_arteries_of_penis is_a: UBERON:0015177 ! helicine artery is_a: UBERON:0036269 ! penis blood vessel relationship: part_of UBERON:0004713 {source="FMA"} ! corpus cavernosum penis relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015177 name: helicine artery def: "Either the helicine artery of the penis or the helicine artery of the uterus." [Wikipedia:Helicine_arteries] synonym: "helicine arteries" EXACT [] xref: Wikipedia:Helicine_arteries is_a: UBERON:0001637 ! artery is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0015178 name: somite border def: "A region of somite adjacent to presomitic mesoderm." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "inter-somited border" RELATED [] synonym: "intersomitic boundary" RELATED [] synonym: "intersomitic fissure" RELATED [] synonym: "intersomitic junction" RELATED [XAO:0004074] synonym: "segmental border" RELATED [] synonym: "somite boundary" RELATED [ZFA:0001462] xref: TAO:0001462 xref: XAO:0004074 xref: ZFA:0001462 is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0002329 ! somite [Term] id: UBERON:0015179 name: somite boundary epithelium def: "Epithelium located in the intersomitic region." [XAO:0004077, XAO:EJS] synonym: "intersomitic epithelium" EXACT [XAO:0004077] synonym: "intersomitic membrane" EXACT [XAO:0004077] xref: XAO:0004077 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0015178 ! somite border [Term] id: UBERON:0015180 name: neck of talus def: "The neck of talus is directed forward and medialward, and comprises the constricted portion of the bone between the body and the oval head. Its upper and medial surfaces are rough, for the attachment of ligaments; its lateral surface is concave and is continuous below with the deep groove for the interosseous talocalcaneal ligament." [Wikipedia:Neck_of_talus] subset: human_reference_atlas subset: pheno_slim synonym: "collum tali" RELATED [Wikipedia:Neck_of_talus] synonym: "talar neck" EXACT [FMA:33636] synonym: "talus neck" EXACT [FMA:33636] xref: FMA:33636 xref: SCTID:182104001 xref: Wikipedia:Neck_of_talus is_a: UBERON:0018664 ! neck of bone element relationship: part_of UBERON:0002395 ! talus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015181 name: neck of tooth def: "The slightly constricted part of a tooth, between the crown and the root." [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] synonym: "cervical margin of tooth" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] synonym: "cervical zone of tooth" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] synonym: "cervix dentis" EXACT OMO:0003011 [FMA:TA] synonym: "cervix of tooth" EXACT [FMA:55627] synonym: "collumn dentis" EXACT OMO:0003011 [ncithesaurus:Collum_Dentis] synonym: "dental neck" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] synonym: "tooth neck" EXACT [FMA:55627] xref: FMA:55627 xref: NCIT:C32346 xref: SCTID:28638008 is_a: UBERON:0001560 ! neck of organ relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0015189 name: perineural vascular plexus def: "The capillary bed that initially surrounds the relative avascular brain and spinal cord; the perineural vascular plexus (PNVP) is the precursor to the blood brain barrier formed by angioblasts which migrate away from somites and is recruited to surround the neural tube in response to VEGF; vascularization of the brain and spinal cord occurs via angiogenesis as sprouting vessels from the PNVP invade the neuroepithelium and grow inward toward the ventricular lumen[MP]." [MP:0012732] synonym: "PNVP" EXACT OMO:0003000 [MGI:anna] xref: EMAPA:35678 is_a: UBERON:0013141 ! capillary bed relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0015202 name: lymph heart def: "A circulatory organ that is reponsible for pumping lymph throughout the body." [http://orcid.org/0000-0002-6601-2165] xref: Wikipedia:Lymph_heart is_a: UBERON:0015229 ! accessory circulatory organ relationship: never_in_taxon NCBITaxon:40674 relationship: present_in_taxon NCBITaxon:8342 relationship: present_in_taxon NCBITaxon:8493 relationship: present_in_taxon NCBITaxon:8570 property_value: structure_notes "Lymph hearts consist of three tissue layers, a tunica interna intima consisting of an endothelial cell lining, a middle tunica media that contains the musculature of the lymph heart, and an outer tunica externa made up of fibroelastic tissue [DOI:10.1152/japplphysiol.00201.2013]" xsd:string property_value: taxon_notes "Caecilians posses a lymph heart at every segment boundary thus having up to 200 in number." xsd:string [Term] id: UBERON:0015203 name: non-connected functional system def: "An anatomical group whose component structures share a common function." [AEO:0000093, AEO:JB, FBbt:00007278, FBC:DOS] xref: AEO:0000093 xref: FBbt:00007278 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034923 ! disconnected anatomical group [Term] id: UBERON:0015204 name: glandular system def: "A non-connected functional system that is composed primarily of a gland." [OBOL:automatic] xref: EHDAA2:0002223 is_a: UBERON:0015203 ! non-connected functional system [Term] id: UBERON:0015212 name: lateral structure def: "Any structure that is placed on one side of the left-right axis of a bilaterian." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class subset: non_informative is_a: UBERON:0000061 ! anatomical structure property_value: curator_notes "This class is primarily to implement taxon constraints. It may be removed in the future." xsd:string [Term] id: UBERON:0015213 name: barnacle cement gland def: "Typical barnacles, common name of the sedentary crustacean marine animals constituting the subclass Cirripedia, attach to the substrate by means of an exceedingly adhesive cement, produced by a cement gland, and secrete a shell, or carapace, of calcareous (limestone) plates, around themselves." [BTO:0002738] synonym: "cement gland" BROAD [BTO:0002738] synonym: "cementary gland" RELATED [BTO:0002738] xref: BTO:0002738 is_a: UBERON:0002365 {source="BTO"} ! exocrine gland [Term] id: UBERON:0015214 name: arcuate ligament def: "A ligament that is part of a diaphragm." [OBOL:automatic] xref: EMAPA:19236 xref: FMA:58280 is_a: UBERON:0000211 ! ligament is_a: UBERON:0005181 ! thoracic segment organ relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0015215 name: median arcuate ligament def: "The median arcuate ligament is a ligament under the diaphragm that connects the right and left crura of diaphragm." [Wikipedia:Median_arcuate_ligament] xref: FMA:58281 xref: Wikipedia:Median_arcuate_ligament is_a: UBERON:0015214 ! arcuate ligament [Term] id: UBERON:0015216 name: nasal meatus xref: EMAPA:18593 xref: FMA:53146 xref: SCTID:310212002 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose [Term] id: UBERON:0015219 name: middle nasal meatus def: "The middle meatus is a nasal opening or canal situated between the middle and inferior conchae, and extends from the anterior to the posterior end of the latter. The lateral wall of this meatus can be satisfactorily studied only after the removal of the middle concha. On it is a curved fissure, the hiatus semilunaris, limited below by the edge of the uncinate process of the ethmoid and above by an elevation named the bulla ethmoidalis; the middle ethmoidal cells are contained within this bulla and open on or near to it. Through the hiatus semilunaris the meatus communicates with a curved passage termed the infundibulum, which communicates in front with the anterior ethmoidal cells and in rather more than fifty percent of skulls is continued upward as the frontonasal duct into the frontal air-sinus; when this continuity fails, the frontonasal duct opens directly into the anterior part of the meatus. Below the bulla ethmoidalis and hidden by the uncinate process of the ethmoid is the opening of the maxillary sinus (ostium maxillare); an accessory opening is frequently present above the posterior part of the inferior nasal concha." [Wikipedia:Middle_nasal_meatus] synonym: "middle meatus" RELATED [Wikipedia:Middle_nasal_meatus] synonym: "middle meatus of the nose" RELATED [Wikipedia:Middle_nasal_meatus] xref: EMAPA:19277 xref: FMA:53139 xref: SCTID:361925009 xref: Wikipedia:Middle_nasal_meatus is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015220 name: inferior nasal meatus def: "The inferior meatus, the largest of the three meatuses of the nose, is the space between the inferior concha and the floor of the nasal cavity. It extends almost the entire length of the lateral wall of the nose, is broader in front than behind, and presents anteriorly the lower orifice of the nasolacrimal canal." [Wikipedia:Inferior_nasal_meatus] synonym: "inferior meatus" RELATED [Wikipedia:Inferior_nasal_meatus] xref: EMAPA:19278 xref: FMA:53140 xref: SCTID:310214001 xref: Wikipedia:Inferior_nasal_meatus is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015221 name: common nasal meatus xref: FMA:53141 is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015222 name: ventral nasal meatus def: "The ventral nasal meatus is found between the ventral nasal concha and the dorsal surface of the hard palate.It connects the nasal vestibule with the nasopharynx. Rostrally it is narrow at the nasal vestibule and widens caudally towards the nasopharyngeal meatus. The ventral nasal meatus is the main passage for air. Apart from olfaction, the nasal cavity functions to warm the inhaled air as it passes through the meatuses over the vascular beds of the mucosa. The air is humidified by the vaporization of tears and serous nasal secretion. The air is cleaned throughout the scattered mucous glands. These glands secrete mucous through the nasal cavity and the mucous serves to trap the large particles that come into contact with it. Clinically in the horse the ventral nasal meatus is the main passage through which a stomach tube can be passed to the pharynx and oesophagus and then to the stomach. This kind of a tube is commonly used when drenching a horse for colic, as well as having many other veterinary applications. The tube has to pass through the ventral nasal meatus to the nasopharyngeal meatus and the caudal nares to reach the pharynx and oesophagus. If the tube is accidentally passed into the dorsal or middle nasal meatuses it would pass to the ethmotubinates and cause massive haemorrhage." [MURDOCH:2178] is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015223 name: dorsal nasal meatus def: "The dosal nasal meatus is a narrow passage bounded dorsally by the roof of the nasal cavity and ventrally by the dorsal concha. It terminates caudally at the junction of the inner plate of the frontal bone with the cribiform plate and lateral mass of the ethmoid bone. It is the shortest and shallowest of the three meatuses." [MURDOCH:659] is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015224 name: interventricular foramen intermedium def: "An anatomical conduit that is part of a ventricular septum intermedium." [OBOL:automatic] synonym: "interventricular ostium intermedium" EXACT OMO:0003011 [] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0004153 ! ventricular septum intermedium [Term] id: UBERON:0015225 name: atrial foramen intermedium def: "An anatomical conduit that is part of a atrial septum intermedium." [OBOL:automatic] synonym: "interatrial ostium intermedium" EXACT OMO:0003011 [] synonym: "ostium intermedium" RELATED [] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0004159 ! atrial septum intermedium [Term] id: UBERON:0015226 name: bulbar spiral septum xref: SCTID:361469006 is_a: UBERON:0002099 ! cardiac septum [Term] id: UBERON:0015227 name: peristaltic circulatory vessel def: "A vessel down which passes a wave of muscular contraction, that forces the flow of haemolymphatic fluid." [http://orcid.org/0000-0002-6601-2165] synonym: "peristaltic heart" EXACT [http://orcid.org/0000-0002-6601-2165] xref: ANISEED:1235302 xref: BSA:0000063 xref: BSA:0000088 is_a: UBERON:0000025 ! tube is_a: UBERON:0000055 ! vessel is_a: UBERON:0007100 ! primary circulatory organ relationship: present_in_taxon NCBITaxon:7718 {source="PMID:20959416"} property_value: taxon_notes "See http://www.ncbi.nlm.nih.gov/pubmed/20235196 for discussion of whether embryonic vertebrate heart is peristaltic" xsd:string [Term] id: UBERON:0015228 name: circulatory organ def: "A hollow, muscular organ, which, by contracting rhythmically, contributes to the circulation of lymph, blood or analogs. Examples: a chambered vertebrate heart; the tubular peristaltic heart of ascidians; the dorsal vessel of an insect; the lymoh heart of a reptile." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "cardiac pump" EXACT [] synonym: "cardiac structure" RELATED [] synonym: "circulatory vessel" NARROW [] synonym: "heart" BROAD [] synonym: "heart or heart like organ" EXACT [] is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0015229 name: accessory circulatory organ def: "A circulatory organ that is not responsible for primary circulation." [UBERON:cjm] is_a: UBERON:0015228 ! circulatory organ [Term] id: UBERON:0015230 name: dorsal vessel heart def: "The caudal, pulsatile region of the dorsal vessel of the arthropod circulatory system." [FBbt:00003154, UBERON:cjm] synonym: "adult heart" NARROW SENSU [FBbt:00003154, NCBITaxon:50557] synonym: "embryonic/larval heart" NARROW SENSU [FBbt:00001675, NCBITaxon:50557] synonym: "heart" RELATED SENSU [NCBITaxon:50557] xref: FBbt:00003154 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: SPD:0000130 is_a: UBERON:0007100 ! primary circulatory organ relationship: part_of UBERON:0015231 {source="FBbt"} ! circulatory system dorsal vessel property_value: external_ontology_notes "FBbt has two terms that are both narrower than this, for adult heart, and embryonic/larval heart." xsd:string [Term] id: UBERON:0015231 name: circulatory system dorsal vessel def: "A tube that runs longitudinally through the thorax and abdomen, along the inside of the dorsal body wall and that forms the major structural component of the open circulatory system of arthropods." [UBERON:cjm] synonym: "dorsal vessel" RELATED SENSU [FBbt:00058291, NCBITaxon:50557] xref: FBbt:00058291 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001009 ! circulatory system property_value: depiction "https://genent.cals.ncsu.edu/wp-content/themes/salient/img/intanat/hemo2a.gif" xsd:anyURI [Term] id: UBERON:0015232 name: nematode pharynx def: "The feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine." [WBbt:0003681] synonym: "esophagus" RELATED [WBbt:0003681] xref: WBbt:0003681 is_a: UBERON:0006562 {notes="parent may be obsoleted"} ! pharynx is_a: UBERON:0013765 ! digestive system element [Term] id: UBERON:0015233 name: nucleus of dorsal thalamus def: "A nucleus of brain that is part of a dorsal thalamus." [OBOL:automatic] synonym: "dorsal thalamic nucleus" EXACT [] synonym: "nucleus of thalamus proper" EXACT [] is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0004703 ! dorsal thalamus relationship: present_in_taxon NCBITaxon:7762 {notes="Hagfish possess a habenular complex and separate nuclei in the dorsal thalamus", source="Butler, 1996, p. 303"} [Term] id: UBERON:0015234 name: nucleus of ventral thalamus def: "A nucleus of brain that is part of a ventral thalamus." [OBOL:automatic] synonym: "ventral thalamic nucleus" EXACT [] is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001900 ! ventral thalamus [Term] id: UBERON:0015238 name: pineal complex def: "A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals." [http://orcid.org/0000-0002-6601-2165] xref: TAO:0001359 xref: ZFA:0001359 is_a: UBERON:0000477 ! anatomical cluster relationship: dubious_for_taxon NCBITaxon:40674 relationship: part_of UBERON:0001899 {source="ZFA"} ! epithalamus [Term] id: UBERON:0015241 name: parapineal organ synonym: "parapineal gland" RELATED [] xref: TAO:0001360 xref: ZFA:0001360 is_a: UBERON:0003103 {source="ZFA"} ! compound organ relationship: never_in_taxon NCBITaxon:40674 relationship: part_of UBERON:0015238 {source="ZFA"} ! pineal complex property_value: external_definition "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry[ZFA:0001360, ZFIN:ZDB-PUB-030206-1]." xsd:string {source="ZFA:0001360, ZFIN:ZDB-PUB-030206-1"} property_value: taxon_notes "In lampreys and apparently in some fossil fish, the parapineal body and the pineal body (epiphysis) are a bilateral pair of structures rather than being located in series, one in front of the other. A pair of visual structures may have been the ancestral condition of this pineal complex (Weichert, 1970, p.622). The parapineal organs of lampreys, tadpoles, and lizards possess cells similar to rods and cones. Frogs possess a brow spot or frontal organ where ancestral pineal eye might have been (Weichert, 1970, p.622)" xsd:string [Term] id: UBERON:0015243 name: lower part of vagina def: "The lower third of the vagina." [http://orcid.org/0000-0002-6601-2165] synonym: "caudal vagina" EXACT [] synonym: "lower third of vagina" RELATED [] synonym: "lower vagina" RELATED [] synonym: "perineal part of vagina" EXACT [FMA:27975] synonym: "sinus vagina" RELATED [EMAPA:18999] synonym: "vagina lower part" EXACT [MA:0003243] synonym: "vaginal bulb" RELATED [EMAPA:18999] xref: EMAPA:18999 xref: FMA:27975 xref: MA:0003243 xref: SCTID:362252008 is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct relationship: part_of UBERON:0000996 {source="EMAPA"} ! vagina [Term] id: UBERON:0015244 name: accessory olfactory bulb granule cell layer synonym: "accessory olfactory bulb, granular layer" EXACT [ABA:AOBgr] synonym: "AOB, granular layer" EXACT [DMBA:AGr] xref: DMBA:15961 xref: EMAPA:35109 xref: MA:0002933 xref: MBA:196 xref: neuronames:2717 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb relationship: part_of UBERON:0005378 ! olfactory bulb granule cell layer [Term] id: UBERON:0015245 name: septal olfactory organ def: "A spatially segregated cluster of sensory cells in the nasal cavity." [http://www.ncbi.nlm.nih.gov/books/NBK55971/] xref: EMAPA:35764 xref: MA:0001327 is_a: UBERON:0010001 ! cell cluster organ relationship: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0005726 {source="NCBIBook:NBK55971"} ! chemosensory system [Term] id: UBERON:0015246 name: septal organ of Masera def: "A small island of olfactory neuroepithelium lying bilaterally at the ventral base of the nasal septum near the entrance of the nasopharynx." [NCBIBook:NBK55971] synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] xref: EMAPA:35766 xref: MA:0002890 is_a: UBERON:0015245 {source="MA"} ! septal olfactory organ relationship: part_of UBERON:0001997 ! olfactory epithelium property_value: taxon_notes "This olfactory apparatus has been observed in many mammals, including rat, mouse, hamster, deer mouse, rabbit, opossum, guinea pig, bandicoot, and koala (Rodolfo-Masera 1943; Adams and McFarland 1971; Bojsen-Moller 1975; Katz and Merzel 1977; Breipohl et al. 1983, 1989; Kratzing 1984a, 1984b; Taniguchi et al. 1993), but not in cat (Breipohl et al. 1983) or ferret (Weiler and Farbman 2003)" xsd:string {source="NCBIBook:NBK55971"} [Term] id: UBERON:0015247 name: bifurcation of trachea def: "This is the point at which the trachea splits into two (left and right) principal bronchi. It is located in the region of the fourth to sixth intercostal space, though this varies with species and with respiratory phase. This position closely associates the bifurcation with the heart base. The thickened median crest initiating the bifurcation is called the tracheal carina ." [MURDOCH:1966] synonym: "bifurcatio tracheae" EXACT OMO:0003011 [FMA:TA] synonym: "tracheal bifurcation" EXACT [FMA:7464] xref: EMAPA:37555 {source="MA:th"} xref: FMA:7464 xref: MA:0003114 xref: SCTID:361954003 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003126 {source="MA"} ! trachea [Term] id: UBERON:0015249 name: digit skin def: "A zone of skin that is part of a digit [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim xref: EMAPA:32615 xref: MA:0003011 is_a: UBERON:0015790 ! autopod skin relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0015250 name: inferior olivary commissure synonym: "interolivary commissure" RELATED [MA:0003019] xref: EMAPA:37610 {source="MA:th"} xref: MA:0003019 is_a: UBERON:0034763 ! hindbrain commissure relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata relationship: part_of UBERON:0014891 {source="MA-modified"} ! brainstem white matter [Term] id: UBERON:0015251 name: modified sebaceous gland xref: EMAPA:37680 {source="MA:th"} xref: MA:0003043 is_a: UBERON:0001821 {source="MA"} ! sebaceous gland [Term] id: UBERON:0015252 name: coat hair follicle def: "A hair follicle that is part of a coat of hair." [OBOL:automatic] xref: EMAPA:35246 xref: MA:0000160 is_a: UBERON:0002073 ! hair follicle relationship: part_of UBERON:0010166 ! coat of hair [Term] id: UBERON:0015280 name: pancreas left lobe def: "A pancreatic lobule that is in_the_left_side_of a exocrine pancreas." [OBOL:automatic] xref: EMAPA:37711 {source="MA:th"} xref: MA:0000722 is_a: UBERON:0007324 ! pancreatic lobule is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0015281 name: pancreas right lobe def: "A pancreatic lobule that is in_the_right_side_of a exocrine pancreas." [OBOL:automatic] xref: EMAPA:37712 {source="MA:th"} xref: MA:0000723 is_a: UBERON:0007324 ! pancreatic lobule is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0015329 name: respiratory system basement membrane def: "A basement membrane of epithelium that is part of a respiratory system." [OBOL:automatic] xref: EMAPA:37570 {source="MA:th"} xref: MA:0001815 is_a: UBERON:0005769 ! basement membrane of epithelium relationship: part_of UBERON:0003570 {source="MA"} ! respiratory system connective tissue [Term] id: UBERON:0015350 name: saphenous artery def: "A branch of the descending genicular artery, the last branch (most distal) of the femoral, the saphenous is also variable. It usually lies between the sartorius and the garcilis muscles and supplies their distal ends. The artery accompanies the saphenous nerve. It usually supplies the skin on the medial and proximal part of the leg. The artery may continue to join, in varying degrees, the dorsalis pedis artery and plantaris pedis arteries." [http://www.anatomyatlases.org/AnatomicVariants/Cardiovascular/Text/Arteries/Saphenous.shtml] subset: human_reference_atlas synonym: "ramus saphenus (arteria descendentis genus)" EXACT OMO:0003011 [FMA:22510, FMA:TA] xref: EMAPA:37220 {source="MA:th"} xref: FMA:22510 xref: MA:0002039 xref: Wikipedia:Saphenous_branch_of_descending_genicular_artery is_a: UBERON:0001637 {source="MA"} ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015410 name: heart plus pericardium subset: human_reference_atlas synonym: "heart/pericardium" EXACT [MA:0002449] xref: EMAPA:37597 {source="MA:th"} xref: MA:0002449 is_a: UBERON:0005178 {source="MA"} ! thoracic cavity element relationship: part_of UBERON:0004535 ! cardiovascular system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015418 name: urethra mesenchymal layer def: "A mesenchyme that is part of a urethra." [OBOL:automatic] xref: EMAPA:37786 {source="MA:th"} xref: MA:0002648 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0015420 name: ureteral valve def: "A valve that is part of a ureter." [OBOL:automatic] synonym: "ureteral valve" EXACT [MA:0002658] synonym: "valve or ureter" EXACT [] xref: EMAPA:37781 {source="MA:th"} xref: MA:0002658 is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0015423 name: hilar portion of hepatic duct def: "The segment of either hepatic duct located in the hilum of the liver." [ncithesaurus:Hilar_Portion_of_the_Hepatic_Duct] synonym: "hilar part of hepatic duct" EXACT [MA:0002665] xref: EMAPA:37599 {source="MA:th"} xref: MA:0002665 xref: NCIT:C43630 xref: UMLS:C1711262 is_a: UBERON:0005171 {source="ncithesaurus"} ! hepatic duct relationship: part_of UBERON:0005604 {source="MA"} ! extrahepatic part of hepatic duct [Term] id: UBERON:0015430 name: levator auris longus muscle def: "Muscle organ located on the dorsal surface of the head innervated by the facial nerve." [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] synonym: "LAL" RELATED OMO:0003000 [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] synonym: "levator auris longus" EXACT [MA:0002758] xref: EMAPA:36627 xref: MA:0002758 is_a: UBERON:0001630 {source="MA"} ! muscle organ relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0015432 name: accessory olfactory bulb mitral cell layer synonym: "accessory olfactory bulb, mitral layer" EXACT [ABA:AOBmi] xref: EMAPA:35111 xref: MA:0002766 xref: MBA:204 xref: neuronames:2716 xref: NLXANAT:1005002 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb relationship: part_of UBERON:0004186 ! olfactory bulb mitral cell layer [Term] id: UBERON:0015433 name: blood vessel external elastic membrane def: "A thin layer of fibrous tissue capable of stretching and contracting. It is part of the tunica media of the blood vessels." [ncithesaurus:External_Elastic_Membrane] synonym: "external elastic lamina" EXACT [FMA:68206] synonym: "external elastic membrane" EXACT [MA:0002862] synonym: "outer elastic lamina" RELATED [FMA:68206] xref: EMAPA:36302 xref: FMA:68206 xref: MA:0002862 xref: NCIT:C32555 is_a: UBERON:0003614 {source="MA"} ! blood vessel elastic tissue relationship: part_of UBERON:0002522 {source="MA"} ! tunica media property_value: external_ontology_notes "in FMA this is classified as an acellular membrane, which is inconsistent with our classification as a tissue layer. Requires further investigation" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0015445 name: anterior lingual gland duct def: "A duct that is part of a anterior lingual gland." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:37641 {source="MA:th"} xref: MA:0002938 xref: SCTID:362180000 is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0006330 ! anterior lingual gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015453 name: subcutaneous lymph node def: "A lymph node that is part of a hypodermis." [OBOL:automatic] xref: MA:0003028 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0015454 name: pancreatic fat pad def: "A fat pad that is part of a pancreas." [OBOL:automatic] xref: MA:0003029 is_a: UBERON:0003586 ! trunk connective tissue is_a: UBERON:0003916 ! fat pad relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0015455 name: accessory hepatic vein xref: EMAPA:37065 {source="MA:th"} xref: MA:0003035 is_a: UBERON:0001143 {source="MA"} ! hepatic vein [Term] id: UBERON:0015458 name: mediastinal fat pad def: "A fat pad that is part of a mediastinum." [OBOL:automatic] xref: MA:0003063 is_a: UBERON:0003593 ! thoracic cavity connective tissue is_a: UBERON:0003916 ! fat pad [Term] id: UBERON:0015469 name: splenic lymph node def: "The splenic lymph nodes (or pancreaticolienal) accompany the lienal (splenic) artery, and are situated in relation to the posterior surface and upper border of the pancreas; one or two members of this group are found in the gastrolienal ligament. Their afferents are derived from the stomach, spleen, and pancreas, their efferents join the celiac group of preaortic glands." [Wikipedia:Splenic_lymph_nodes] synonym: "jPS 10 node" RELATED [FMA:66187] synonym: "jPS no. 10 node" RELATED [FMA:66187] synonym: "lymph node of splenic hilum" RELATED [FMA:66187] synonym: "no. 10 pancreaticosplenic lymph node" RELATED [FMA:66187] synonym: "pancreaticolienal lymph node" RELATED [Wikipedia:Splenic_lymph_nodes] synonym: "splenic glands" RELATED [Wikipedia:Splenic_lymph_nodes] xref: FMA:66187 xref: MA:0003074 xref: SCTID:80088008 xref: Wikipedia:Splenic_lymph_nodes is_a: UBERON:0000029 {source="MA"} ! lymph node [Term] id: UBERON:0015472 name: tracheobronchial lymph node alt_id: UBERON:0016381 def: "A lymph node located near the bifurcation of the trachea." [ncithesaurus:Tracheobronchial_Lymph_Node] synonym: "bronchial lymph node" NARROW [MA:0003078] synonym: "lymph node, tracheobronchial" RELATED [] synonym: "nodus tracheobronchiale lymphaticus" EXACT [FMA:5950] synonym: "tracheobronchal lymph node" EXACT [PMID:16624319] synonym: "tracheobronchal node" EXACT [PMID:16624319] synonym: "tracheobronchial node" EXACT [FMA:5950] xref: FMA:5950 xref: MA:0003068 xref: NCIT:C77651 xref: SCTID:245341003 xref: UMLS:C0229751 xref: Wikipedia:Tracheobronchial_lymph_nodes is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0007644 ! thoracic lymph node relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: external_definition "Single (unpaired) lymph node at the tracheal bifurcation." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0015474 name: axilla skin def: "A zone of skin that is part of a axilla." [OBOL:automatic] synonym: "axillary skin" EXACT [FMA:37322] synonym: "skin of armpit" EXACT [PMID:38565739] synonym: "skin of axilla" EXACT [FMA:37322] xref: EMAPA:37349 {source="MA:th"} xref: FMA:37322 xref: MA:0003087 xref: NCIT:C116164 is_a: UBERON:8480025 ! skin of clavicle region relationship: part_of UBERON:0009472 ! axilla [Term] id: UBERON:0015476 name: nose skin def: "A zone of skin that is part of a external nose." [OBOL:automatic] synonym: "external nasal skin" EXACT [FMA:24763] synonym: "skin of external nose" EXACT [FMA:24763] synonym: "skin of nose" EXACT [FMA:24763] xref: EMAPA:37684 {source="MA:th"} xref: FMA:24763 xref: MA:0003090 is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:0015477 name: axillary fat pad def: "A fat pad that is part of a axilla." [OBOL:automatic] xref: MA:0003091 is_a: UBERON:0003916 ! fat pad relationship: part_of UBERON:0009472 ! axilla [Term] id: UBERON:0015479 name: scrotum skin def: "A zone of skin that is part of a scrotum." [OBOL:automatic] subset: pheno_slim synonym: "scrotal skin" EXACT [] synonym: "skin of scrotum" EXACT [FMA:20432] xref: EMAPA:36411 xref: FMA:20432 xref: MA:0003093 xref: SCTID:361710000 is_a: UBERON:8480029 ! skin of external genitalia relationship: part_of UBERON:0001300 ! scrotum [Term] id: UBERON:0015480 name: proper hepatic artery def: "The hepatic artery proper (also proper hepatic artery), arises from the common hepatic artery and runs alongside the portal vein and the common bile duct to form the portal triad. The hepatic artery proper gives off a small supraduodenal artery to the duodenal bulb. Then the right gastric artery comes off and runs to the left along the lesser curvature of the stomach to meet the left gastric artery, which is a branch of the celiac trunk. It subsequently gives off the cystic artery, which feeds the gallbladder, before bifurcating into the right and left hepatic arteries. Of note, the right and left hepatic arteries may demonstrate variant anatomy. A replaced right hepatic artery may arise from the superior mesenteric artery (SMA) and a replaced left hepatic artery may arise from the left gastric artery." [Wikipedia:Hepatic_artery_proper] subset: human_reference_atlas synonym: "hepatic artery proper" EXACT [FMA:14772] synonym: "proper hepatic" RELATED [Wikipedia:Hepatic_artery_proper] xref: EMAPA:37217 {source="MA:th"} xref: FMA:14772 xref: MA:0003095 xref: SCTID:244262006 xref: Wikipedia:Hepatic_artery_proper is_a: UBERON:0001193 {source="MA"} ! hepatic artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015481 name: left hepatic artery def: "A hepatic artery that is part of a left lobe of liver." [OBOL:automatic] subset: human_reference_atlas synonym: "left branch of hepatic artery" EXACT [FMA:14779] synonym: "left part of hepatic artery proper" EXACT [FMA:14779] synonym: "ramus sinister (arteria hepatica propria)" EXACT OMO:0003011 [FMA:14779, FMA:TA] xref: EMAPA:37096 {source="MA:th"} xref: FMA:14779 xref: MA:0003096 is_a: UBERON:0001193 ! hepatic artery is_a: UBERON:0015796 ! liver blood vessel relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015482 name: right hepatic artery def: "A hepatic artery that is part of a right lobe of liver." [OBOL:automatic] subset: human_reference_atlas synonym: "ramus dexter (arteria hepatica propria)" EXACT OMO:0003011 [FMA:14778, FMA:TA] synonym: "right branch of hepatic artery proper" EXACT [FMA:14778] synonym: "right part of hepatic artery proper" EXACT [FMA:14778] xref: EMAPA:37376 {source="MA:th"} xref: FMA:14778 xref: MA:0003097 is_a: UBERON:0001193 ! hepatic artery is_a: UBERON:0015796 ! liver blood vessel relationship: part_of UBERON:0001114 {source="FMA"} ! right lobe of liver relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015484 name: epidermis of metapodial pad def: "A zone of skin that is part of a metapodial pad." [OBOL:automatic] subset: pheno_slim synonym: "foot pad skin" RELATED [MA:0003105] xref: EMAPA:37355 {source="MA:th"} xref: MA:0003105 is_a: UBERON:0009200 ! limb epidermis is_a: UBERON:0019204 ! skin epithelium relationship: part_of UBERON:0008838 ! metapodial pad property_value: external_ontology_notes "MA distinguishes between foot pad and foot pad skin, but its not clear how these differ if foot pads are skin. See https://github.com/obophenotype/uberon/issues/1305" xsd:string {external_ontology="MA"} [Term] id: UBERON:0015485 name: choledocho-duodenal junction def: "Hat part of the duodenal wall traversed by the ductus choledochus, ductus pancreaticus, and ampulla." [http://medical-dictionary.thefreedictionary.com/choledochoduodenal+junction] synonym: "choledochoduodenal junction" EXACT [MA:0003108] xref: EMAPA:37478 {source="MA:th"} xref: MA:0003108 is_a: UBERON:1100000 ! digestive tract junction [Term] id: UBERON:0015488 name: sural nerve def: "The sural nerve (short saphenous nerve), formed by the junction of the medial sural cutaneous with the peroneal anastomotic branch of the lateral sural cutaneous nerve, passes downward near the lateral margin of the tendo calcaneus, lying close to the small saphenous vein, to the interval between the lateral malleolus and the calcaneus. It runs forward below the lateral malleolus, and is continued as the lateral dorsal cutaneous nerve along the lateral side of the foot and little toe (via a dorsal digital nerve), communicating on the dorsum of the foot with the intermediate dorsal cutaneous nerve, a branch of the superficial peroneal. In the leg, its branches communicate with those of the posterior femoral cutaneous." [Wikipedia:Sural_nerve] synonym: "nerve, sural" RELATED [] synonym: "short saphenal nerve" RELATED [] xref: EMAPA:37757 {source="MA:th"} xref: FMA:44688 xref: MA:0003111 xref: MESH:D013497 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C77675 xref: SCTID:181073006 xref: Wikipedia:Sural_nerve is_a: UBERON:0003431 ! leg nerve property_value: has_relational_adjective "sural" xsd:string [Term] id: UBERON:0015510 name: body of corpus callosum def: "An area within the corpus callosum, a white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain, between the genu (anterior region) and the splenium (posterior region)." [ncithesaurus:Body_of_the_Corpus_Callosum] synonym: "body of corpus callosum" RELATED [NeuroNames:195] synonym: "body of the corpus callosum" RELATED [NeuroNames:195] synonym: "corpus callosum body" EXACT [FMA:61947] synonym: "corpus callosum truncus" RELATED OMO:0003011 [NeuroNames:195] synonym: "corpus callosum, body" RELATED [NeuroNames:195] synonym: "corpus callosum, corpus" RELATED OMO:0003011 [NeuroNames:195] synonym: "trunculus corporis callosi" RELATED OMO:0003011 [NeuroNames:195] synonym: "truncus corporis callosi" EXACT OMO:0003011 [FMA:61947, FMA:TA] synonym: "truncus corpus callosi" RELATED OMO:0003011 [NeuroNames:195] synonym: "trunk of corpus callosum" RELATED [NeuroNames:195] xref: DHBA:10564 xref: FMA:61947 xref: HBA:9224 xref: NCIT:C32216 xref: neuronames:195 xref: NeuroNamesCNID:177 xref: SCTID:279307005 xref: UMLS:C0152320 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015593 name: frontal gyrus def: "A gyrus that is part of a frontal cortex." [OBOL:automatic] xref: NCIT:C32636 xref: UMLS:C0228195 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0015599 name: genu of corpus callosum def: "Part of corpus callosum comprising the 'kneelike' anterior bend (adapted from Nolte, The Human Brain, 6th ed., 2009 pg 664)." [NLX:144462] synonym: "corpus callosum genu" EXACT [FMA:61946] synonym: "corpus callosum, genu" RELATED OMO:0003011 [NeuroNames:194] synonym: "genu" RELATED [NeuroNames:194] synonym: "genu corporis callosi" RELATED OMO:0003011 [NeuroNames:194] synonym: "genu corpus callosi" RELATED OMO:0003011 [NeuroNames:194] synonym: "genu of corpus callosum" RELATED [NeuroNames:194] synonym: "genu of the corpus callosum" RELATED [NeuroNames:194] synonym: "rostrum of corpus callosum (Mai)" RELATED [NeuroNames:194] xref: DHBA:10563 xref: FMA:61946 xref: HBA:9223 xref: MBA:1108 xref: NCIT:C32675 xref: neuronames:194 xref: NeuroNamesCNID:176 xref: NLX:144462 xref: SCTID:279310003 xref: UMLS:C0152321 xref: Wikipedia:Genu_of_the_corpus_callosum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015703 name: rostrum of corpus callosum def: "The part of the corpus callosum that projects posteriorly and inferiorly from the anteriormost genu." [Wikipedia:Corpus_callosum] synonym: "corpus callosum rostrum" RELATED OMO:0003011 [NeuroNames:193] synonym: "corpus callosum, rostrum" RELATED [NeuroNames:193] synonym: "rostrum" RELATED [NeuroNames:193] synonym: "rostrum corporis callosi" RELATED OMO:0003011 [NeuroNames:193] synonym: "rostrum corpus callosi" RELATED OMO:0003011 [NeuroNames:193] synonym: "rostrum of corpus callosum" RELATED [NeuroNames:193] synonym: "rostrum of the corpus callosum" RELATED [NeuroNames:193, Wikipedia:Rostrum_of_corpus_callosum] xref: DHBA:10562 xref: FMA:61945 xref: HBA:9226 xref: MBA:979 xref: NCIT:C33496 xref: neuronames:193 xref: NeuroNamesCNID:175 xref: SCTID:279311004 xref: UMLS:C0152322 xref: Wikipedia:Rostrum_of_corpus_callosum is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015704 name: sagittal sinus def: "Either the inferior or superior sagittal sinus." [Wikipedia:Sagittal_sinus] xref: NCIT:C12513 xref: SCTID:244400002 xref: UMLS:C0447120 xref: Wikipedia:Sagittal_sinus is_a: UBERON:0017640 {source="FMA-abduced"} ! unpaired venous dural sinus [Term] id: UBERON:0015708 name: splenium of the corpus callosum def: "The posterior end of the corpus callosum. It overlaps the tela chorioidea of the third ventricle and the mid-brain, and ends in a thick, convex, free border." [Wikipedia:Splenium] synonym: "corpus callosum splenium" EXACT [FMA:61948] synonym: "corpus callosum splenium" RELATED OMO:0003011 [NeuroNames:196] synonym: "corpus callosum, splenium" EXACT [FMA:61948] synonym: "corpus callosum, splenium" RELATED OMO:0003011 [NeuroNames:196] synonym: "corpus callosum, splenium (Burdach)" RELATED [NeuroNames:196] synonym: "splenium" BROAD [NeuroNames:196] synonym: "splenium corporis callosi" RELATED OMO:0003011 [NeuroNames:196] synonym: "splenium corpus callosi" RELATED OMO:0003011 [NeuroNames:196] synonym: "splenium of corpus callosum" RELATED [NeuroNames:196] synonym: "splenium of the corpus callosum" RELATED [NeuroNames:196] xref: DHBA:10565 xref: FMA:61948 xref: HBA:9225 xref: MBA:986 xref: NCIT:C33610 xref: neuronames:196 xref: NeuroNamesCNID:178 xref: SCTID:362355007 xref: UMLS:C0152319 xref: Wikipedia:Splenium is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015716 name: anal canal epithelium def: "An epithelium that is part of a anal canal." [OBOL:automatic] subset: human_reference_atlas synonym: "anal canal epithelium" EXACT [FMA:17511] synonym: "epithelium of anal canal" EXACT [FMA:17511] xref: EMAPA:18835 xref: FMA:17511 is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0014703 ! anal membrane ectodermal component relationship: part_of UBERON:0000159 ! anal canal relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015717 name: smooth muscle tissue layer of ejaculatory duct def: "A smooth muscle tissue that is part of a ejaculatory duct." [OBOL:automatic] synonym: "muscle layer of ejaculatory duct" EXACT [FMA:19372] xref: EMAPA:32289 xref: FMA:19372 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000999 ! ejaculatory duct [Term] id: UBERON:0015751 name: inferior tarsal muscle def: "A smooth muscle tissue that is part of a inferior eyelid tarsus." [OBOL:automatic] xref: FMA:49059 xref: SCTID:368783000 is_a: UBERON:0003386 ! smooth muscle of eye relationship: part_of UBERON:0004774 ! inferior eyelid tarsus [Term] id: UBERON:0015757 name: heterogeneous tissue synonym: "portion of heterogeneous tissue" EXACT [FMA:62798] xref: FMA:62798 is_a: UBERON:0000479 {source="FMA"} ! tissue [Term] id: UBERON:0015760 name: mixed stratified cuboidal and columnar epithelium def: "Multilaminar epithelium, which consists of more than one layer of cuboidal and columnar cells, only one layer of which is in contact with a basement membrane. Examples: epithelium of wall of pancreatic duct, epithelium of wall of duct of salivary gland." [FMA:63913] xref: FMA:63913 is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium [Term] id: UBERON:0015764 name: dense regular elastic tissue def: "Regular connective tissue, which consists of fibroblasts and of intercellular matrix, which contains elastic fiber bundles oriented predominantly in definable directions." [FMA:64782] synonym: "dense elastic connective tissue" EXACT [FMA:64782] synonym: "dense regular elastic connective tissue" EXACT [FMA:64782] xref: FMA:64782 is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0007845 {source="FMA"} ! regular connective tissue [Term] id: UBERON:0015766 name: epithelium of duct of salivary gland def: "An epithelium that is part of a duct of salivary gland." [OBOL:automatic] synonym: "epithelium of salivary duct" EXACT [FMA:67682] synonym: "salivary duct epithelium" EXACT [FMA:67682] synonym: "salivary ductal epithelium" EXACT [FMA:67682] xref: FMA:67682 is_a: UBERON:0004809 ! salivary gland epithelium is_a: UBERON:0010371 {source="FMA"} ! ecto-epithelium is_a: UBERON:0034969 ! epithelial layer of duct relationship: part_of UBERON:0001837 ! duct of salivary gland [Term] id: UBERON:0015777 name: transitional epithelium of prostatic urethra xref: FMA:74267 is_a: UBERON:0004787 ! urethra urothelium is_a: UBERON:0016510 ! epithelium of male urethra relationship: part_of UBERON:0001335 ! prostatic urethra [Term] id: UBERON:0015783 name: smooth muscle layer in fatty layer of subcutaneous tissue def: "A smooth muscle tissue that is part of a hypodermis." [OBOL:automatic] synonym: "muscle layer in fatty layer of subcutaneous tissue" EXACT [FMA:77862] synonym: "stratum musculosum panniculi adiposi telae subcutaneae" EXACT OMO:0003011 [FMA:77862, FMA:TA] xref: FMA:77862 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0015784 name: duct of olfactory gland def: "A duct that is part of a olfactory gland." [OBOL:automatic] synonym: "olfactory gland duct" EXACT [] is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002232 ! olfactory gland [Term] id: UBERON:0015785 name: acinus of olfactory gland def: "An acinus that is part of a olfactory gland." [OBOL:automatic] synonym: "acinar part of olfactory gland" EXACT [] synonym: "olfactory gland acinus" EXACT [] is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0002232 ! olfactory gland [Term] id: UBERON:0015786 name: respiratory segment of nasal mucosa def: "The portion of the nasal mucosa that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] synonym: "pars respiratoria tunicae mucosae nasi" EXACT OMO:0003011 [FMA:77198, FMA:TA] synonym: "respiratory zone of nasal mucosa" EXACT [FMA:77198] xref: FMA:77198 is_a: UBERON:0001826 ! nasal cavity mucosa property_value: structure_notes "lined with ciliated pseudostratified columnar epithelium (respiratory epithelium). The respiratory segment has a very vascularized lamina propria allowing the venous plexuses of the conchal mucosa to engorge with blood, restricting airflow and causing air to be directed to the other side of the nose." xsd:string {source="Wikipedia:Nasal_cavity"} [Term] id: UBERON:0015787 name: upper respiratory conduit def: "Any anatomical conduit which is part of the upper respiratory tract." [http://orcid.org/0000-0002-6601-2165] synonym: "respiratory conduit" RELATED [FMA:265132] xref: FMA:265132 is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0001557 ! upper respiratory tract property_value: external_definition "Anatomical cluster which consists a segment of the upper respiratory tract[FMA:265132]." xsd:string {source="FMA:265132"} [Term] id: UBERON:0015788 name: olfactory apparatus chamber def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] xref: FMA:265136 is_a: UBERON:0015787 ! upper respiratory conduit relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0015789 name: cranial or facial muscle subset: grouping_class synonym: "cranial-facial muscle" RELATED [EMAPA:25133] synonym: "cranial/facial muscle" EXACT [MA:0000579] synonym: "cranio-facial muscle" RELATED [EMAPA:25133] synonym: "craniofacial muscle" RELATED [EMAPA:25133] xref: EMAPA:25133 xref: MA:0000579 is_a: UBERON:0002376 ! cranial muscle relationship: part_of UBERON:0004473 ! musculature of face property_value: curator_notes "see also, 'facial nerve muscle', which is not precisely equivalent. We include this grouping to accomodate the MA class, which includes masticatory muscle as a subtype; note the masticatory muscle is noy innervated by the facial nerve, unlike the facial muscles proper" xsd:string [Term] id: UBERON:0015790 name: autopod skin def: "A zone of skin that is part of a autopod region." [OBOL:automatic] synonym: "paw skin" RELATED [MA:0003120] xref: EMAPA:32723 xref: MA:0003120 is_a: UBERON:0001419 ! skin of limb relationship: part_of UBERON:0002470 ! autopod region [Term] id: UBERON:0015791 name: digit connective tissue def: "A portion of connective tissue that is part of a digit." [OBOL:automatic] xref: EMAPA:37290 {source="MA:th"} xref: MA:0003123 is_a: UBERON:0003587 ! limb connective tissue relationship: part_of UBERON:0002544 ! digit relationship: transformation_of UBERON:0010702 ! digit mesenchyme [Term] id: UBERON:0015792 name: prostate gland dorsal lobe xref: EMAPA:29808 xref: MA:0003124 is_a: UBERON:0001328 ! lobe of prostate relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0008808 ! prostate gland dorsolateral lobe [Term] id: UBERON:0015793 name: induseum griseum def: "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)." [NLX:49940] synonym: "gray stria of Lancisi" RELATED [NeuroNames:173] synonym: "gyrus epicallosus" RELATED [Wikipedia:Indusium_griseum] synonym: "gyrus indusium griseum" RELATED [Wikipedia:Indusium_griseum] synonym: "indusium griseum" EXACT [HBA:265504424] synonym: "supracallosal gyrus" RELATED [Wikipedia:Indusium_griseum] xref: DHBA:10304 xref: DMBA:16147 xref: EMAPA:35430 xref: FMA:62488 xref: HBA:265504424 xref: MA:0003129 xref: MBA:19 xref: neuronames:173 xref: NLX:49940 xref: Wikipedia:Indusium_griseum is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 ! stria of telencephalon relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus [Term] id: UBERON:0015794 name: left lung lobar bronchus epithelium def: "An epithelium that is part of a lobar bronchus of left lung." [OBOL:automatic] xref: EMAPA:17658 xref: MA:0003135 is_a: UBERON:0002339 ! epithelium of lobar bronchus is_a: UBERON:0003365 ! epithelium of left lung relationship: part_of UBERON:0003405 ! lobar bronchus of left lung [Term] id: UBERON:0015795 name: right lung lobar bronchus epitheium def: "An epithelium that is part of a lobar bronchus of right lung." [OBOL:automatic] xref: EMAPA:17666 xref: MA:0003136 is_a: UBERON:0002339 ! epithelium of lobar bronchus is_a: UBERON:0003364 ! epithelium of right lung relationship: part_of UBERON:0003404 ! lobar bronchus of right lung [Term] id: UBERON:0015796 name: liver blood vessel def: "A blood vessel that is part of a liver." [OBOL:automatic] synonym: "hepatic blood vessel" RELATED [EMAPA:35498] xref: EMAPA:35498 xref: MA:0003137 is_a: UBERON:0003497 ! abdomen blood vessel relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0015800 name: taenia tectum of brain def: "A continuation ventrally of the supracallosal gyrus beyond the rostrum of the corpus callosum. It is demonstrated histologically by Nissl stain. In the human ( Anthoney-1994 ) and the macaque ( Paxinos-2004 ) it lies on the rostral surface of the lamina terminalis and is considered identical to or part of the paraterminal gyrus. In the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ) it is located similarly in relation to the supracallosal gyrus, however, it is a more prominent layered structure that extends rostrally on the medial surface overlying the anterior olfactory nucleus. It is considered part of the olfactory areas (rodent) of the cerebral cortex. In rodents it consists of two parts, the dorsal tenia tecta and the ventral tenia tecta. Note that some authors use the term 'tenia tecta' or 'taenia tecta' as a synonym for the lateral longitudinal stria ( Riley-1943 )." [neuronames:1870] synonym: "taenia tecta" EXACT [MA:0003150] synonym: "taenia tecta" RELATED OMO:0003011 [NeuroNames:1870] synonym: "taenia tectum" EXACT [DHBA:10305] synonym: "tenia tecta" RELATED [NeuroNames:1870] synonym: "tenia tectum" RELATED [NeuroNames:1870] xref: BTO:0003738 xref: DHBA:10305 xref: DMBA:16154 xref: EMAPA:35847 xref: MA:0003150 xref: MBA:589 xref: neuronames:1870 xref: NLX:144479 is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 ! stria of telencephalon relationship: part_of UBERON:0002264 ! olfactory bulb relationship: part_of UBERON:0002665 ! supracallosal gyrus [Term] id: UBERON:0015807 name: ear epithelium def: "An epithelium that is part of a ear." [OBOL:automatic] xref: EMAPA:32800 xref: MA:0003161 is_a: UBERON:0019304 ! sensory organ epithelium relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0015808 name: eye epithelium def: "An epithelium that is part of a camera-type eye." [OBOL:automatic] xref: EMAPA:35957 xref: MA:0003162 is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0015813 name: middle ear epithelium def: "An epithelium that is part of a middle ear." [OBOL:automatic] xref: EMAPA:35673 xref: MA:0003169 is_a: UBERON:0015807 ! ear epithelium relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0015814 name: outer ear epithelium def: "An epithelium that is part of a external ear." [OBOL:automatic] xref: EMAPA:35956 xref: MA:0003170 is_a: UBERON:0015807 ! ear epithelium relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0015827 name: obsolete brainstem reticular formation is_obsolete: true replaced_by: UBERON:0002275 [Term] id: UBERON:0015828 name: cerebellum ventricular layer xref: EHDAA2:0001153 xref: EMAPA:17790 xref: MA:0003187 is_a: UBERON:0004130 {source="MA"} ! cerebellar layer relationship: part_of UBERON:0005281 ! ventricular system of central nervous system property_value: editor_note "TODO - disambiguate between developing and adult structure" xsd:string [Term] id: UBERON:0015829 name: forebrain ventricular layer xref: EMAPA:32921 xref: MA:0003190 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0001890 ! forebrain relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: UBERON:0015833 name: foregut epithelium def: "An epithelium that is part of a foregut." [OBOL:automatic] xref: EMAPA:32922 xref: MA:0003204 is_a: UBERON:0003929 ! digestive tract epithelium relationship: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0015834 name: duodenum lamina propria def: "A lamina propria that is part of a duodenum." [OBOL:automatic] subset: human_reference_atlas synonym: "duodenal lamina propria" EXACT [FMA:15972] synonym: "lamina propria mucosae of duodenum" EXACT [FMA:15972] synonym: "lamina propria of duodenum" EXACT [FMA:15972] xref: EMAPA:27255 xref: FMA:15972 xref: MA:0003209 is_a: UBERON:0001238 ! lamina propria of small intestine relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duodenum relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015837 name: incisor dental pulp def: "A dental pulp that is part of a incisor tooth." [OBOL:automatic] xref: EMAPA:35429 xref: FMA:294459 xref: MA:0003221 is_a: UBERON:0001754 ! dental pulp relationship: part_of UBERON:0001098 ! incisor tooth property_value: external_ontology_notes "FMA has classes for very specific sublcasses but no generic grouping at this level" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0015838 name: molar dental pulp xref: EMAPA:35576 xref: FMA:294469 xref: MA:0003222 is_a: UBERON:0001754 ! dental pulp relationship: part_of UBERON:0003655 ! molar tooth property_value: external_ontology_notes "FMA has classes for very specific sublcasses but no generic grouping at this level" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0015839 name: molar epithelium synonym: "epithelium of molar" EXACT [] synonym: "epithelium of molar tooth" EXACT [] xref: EMAPA:32878 xref: MA:0003224 is_a: UBERON:0003843 ! dental epithelium relationship: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0015840 name: incisor dental lamina def: "A dental lamina that is part of a incisor tooth." [OBOL:automatic] xref: EMAPA:32896 xref: MA:0003225 is_a: UBERON:0003355 ! epithelium of incisor is_a: UBERON:0004825 ! dental lamina relationship: part_of UBERON:0003355 ! epithelium of incisor [Term] id: UBERON:0015841 name: molar dental lamina xref: EMAPA:32879 xref: MA:0003226 is_a: UBERON:0004825 ! dental lamina is_a: UBERON:0015839 ! molar epithelium relationship: part_of UBERON:0015839 ! molar epithelium [Term] id: UBERON:0015842 name: incisor enamel organ def: "A tooth enamel organ that is part of a incisor tooth." [OBOL:automatic] xref: EMAPA:32895 xref: MA:0003227 is_a: UBERON:0005176 ! tooth enamel organ relationship: part_of UBERON:0003355 ! epithelium of incisor [Term] id: UBERON:0015843 name: molar enamel organ xref: EMAPA:32880 xref: MA:0003228 is_a: UBERON:0005176 ! tooth enamel organ relationship: part_of UBERON:0015839 ! molar epithelium [Term] id: UBERON:0015844 name: molar dental papilla synonym: "molar odontogenic papilla" EXACT [OBOL:automatic] synonym: "molar tooth odontogenic papilla" EXACT [OBOL:automatic] xref: EMAPA:32882 xref: MA:0003232 is_a: UBERON:0001763 ! odontogenic papilla relationship: develops_from UBERON:0011641 ! odontogenic mesenchyme of molar relationship: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0015846 name: incisor mesenchyme def: "An odontogenic mesenchyme that is part of a incisor tooth." [OBOL:automatic] xref: EMAPA:32894 xref: MA:0003229 is_a: UBERON:0003856 ! uncondensed odontogenic mesenchyme relationship: part_of UBERON:0001098 ! incisor tooth [Term] id: UBERON:0015847 name: upper left incisor tooth def: "A upper jaw incisor that is in_the_left_side_of a dentition." [OBOL:automatic] xref: SCTID:245585000 is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0015848 name: incisor tusk def: "An incisor tooth that protrudes beyond the mouth." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001098 ! incisor tooth is_a: UBERON:0010879 ! tusk relationship: present_in_taxon NCBITaxon:9780 [Term] id: UBERON:0015849 name: canine tusk def: "An cuspid tooth that protrudes beyond the mouth." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003674 ! cuspid is_a: UBERON:0010879 ! tusk relationship: present_in_taxon NCBITaxon:41426 relationship: present_in_taxon NCBITaxon:9705 relationship: present_in_taxon NCBITaxon:9823 [Term] id: UBERON:0015850 name: upper left incisor tusk is_a: UBERON:0015847 ! upper left incisor tooth is_a: UBERON:0015848 ! incisor tusk [Term] id: UBERON:0015851 name: upper right incisor tusk is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0015848 ! incisor tusk [Term] id: UBERON:0015852 name: narwhal tusk def: "A upper jaw incisor that protrudes prominently from the mouth as a single median tusk, found in narwhals." [http://orcid.org/0000-0002-6601-2165] comment: Typically the left incisor with the right vestigial, but some males have two tusks synonym: "median incisor tusk" EXACT [] is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0015848 ! incisor tusk [Term] id: UBERON:0015853 name: dental pulp of median incisor tusk def: "A dental pulp that is part of a narwhal tusk." [OBOL:automatic] is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0015837 ! incisor dental pulp relationship: part_of UBERON:0015852 ! narwhal tusk [Term] id: UBERON:0015854 name: interpedicular line def: "An anatomical line that connects two successive vertebral pedicles. The length of this line is known as the interpedicular distance." [http://orcid.org/0000-0002-6601-2165] synonym: "inter-vertebral-pedicle line" EXACT [] synonym: "interpedicular distance" RELATED [HP:0008450] is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0015855 name: ventral ectodermal ridge def: "A thickening of the surface ectoderm on the ventral side of the embryonic tail which resembles the apical ectodermal ridge of the limb bud." [PMID:7486014] synonym: "VER" RELATED OMO:0003000 [PMID:7486014] xref: EMAPA:36491 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0002533 ! post-anal tail bud property_value: development_notes "A group of ectodermal cells that serves as an important signaling center in the mouse tail-bud following completion of gastrulation, and contains progenitor cells that contribute to the ventral midline ectoderm of the tail; ablation of the VER leads to defects in somitogenesis and tail elongation[MP]" xsd:string [Term] id: UBERON:0015857 name: parotid lymph node def: "A lymph node found near the parotid gland." [Wikipedia:Parotid_lymph_nodes] synonym: "parotid node" EXACT [FMA:61216] xref: FMA:61216 xref: MA:0003088 xref: SCTID:279140007 xref: Wikipedia:Parotid_lymph_nodes is_a: UBERON:0015870 ! lymph node of head [Term] id: UBERON:0015859 name: hepatic lymph node def: "Any of the lymph nodes adjacent to the stomach and duodenum." [ncithesaurus:Hepatic_Lymph_Node] synonym: "hepatic node" EXACT [FMA:12798] synonym: "lymphoglandulae hepaticae" EXACT OMO:0003011 [Wikipedia:Hepatic_lymph_nodes] synonym: "lymphoglandulæ hepaticæ" EXACT OMO:0003011 [Wikipedia:Hepatic_lymph_nodes] synonym: "nodi lymphoidei hepatici" EXACT OMO:0003011 [Wikipedia:Hepatic_lymph_nodes] synonym: "portal lymph node" EXACT [FMA:12798] xref: FMA:12798 xref: MA:0003072 xref: NCIT:C77640 xref: SCTID:280480005 xref: UMLS:C0229769 xref: Wikipedia:Hepatic_lymph_nodes is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0015860 name: visceral abdominal lymph node xref: FMA:66178 is_a: UBERON:0002507 {source="FMA"} ! abdominal lymph node [Term] id: UBERON:0015863 name: gastric lymph node def: "A lymph node along the left gastric artery or greater omentum." [ncithesaurus:Gastric_Lymph_Node] synonym: "gastric node" EXACT [FMA:12796] synonym: "nodi lymphoidei gastrici" EXACT OMO:0003011 [Wikipedia:Gastric_lymph_nodes] xref: FMA:12796 xref: MA:0003071 xref: NCIT:C92222 xref: UMLS:C1282334 xref: Wikipedia:Gastric_lymph_nodes is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node property_value: external_definition "Single (unpaired) lymph node in the lesser omentum at the minor curvature of the stomach" xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0015865 name: pancreaticosplenic lymph node def: "Lymph nodes of the pancreatic tail and spleen, receiving afferents from both organs plus the greater curvature of the stomach; they drain to the celiac lymph nodes." [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] synonym: "nodi lymphatici panoccidianuperiores" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] synonym: "nodi lymphoidei pancreaticolienales" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] synonym: "nodi lymphoidei pancreaticosplenales" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] synonym: "pancreaticosplenic node" EXACT [FMA:12799] synonym: "superior pancreatic lymph nodes" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] synonym: "superior pancreatic node" RELATED [FMA:12799] synonym: "superior pancreaticosplenic lymph node" RELATED [FMA:12799] xref: FMA:12799 xref: SCTID:280723006 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node property_value: editor_note "Consider obsoleting - this is apparently an obsolete term that regarded the pancreatic and splenic lymph nodes as a single anatomic unit.[http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes]" xsd:string [Term] id: UBERON:0015866 name: pyloric lymph node synonym: "pyloric node" EXACT [FMA:12802] xref: FMA:12802 xref: SCTID:280127001 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0015867 name: cystic lymph node synonym: "cystic node" EXACT [FMA:12804] xref: FMA:12804 xref: SCTID:46081008 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0015868 name: lymph node of epiploic foramen synonym: "epiploic foramen lymph node" RELATED [FMA:12805] synonym: "lymph node of anterior border of epiploic foramen" EXACT [FMA:12805] synonym: "lymph node of anterior border of omental foramen" EXACT [FMA:12805] synonym: "node of anterior border of epiploic foramen" EXACT [FMA:12805] synonym: "node of anterior border of omental foramen" EXACT [FMA:12805] synonym: "nodus foraminalis" EXACT OMO:0003011 [FMA:12805, FMA:TA] synonym: "nodus lymphoideus foraminalis" EXACT OMO:0003011 [FMA:12805, FMA:TA] xref: FMA:12805 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0015869 name: retropharyngeal lymph node def: "The retropharyngeal lymph nodes, from one to three in number, lie in the buccopharyngeal fascia, behind the upper part of the pharynx and in front of the arch of the atlas, being separated, however, from the latter by the Longus capitis. Their afferents drain the nasal cavities, the nasal part of the pharynx, and the auditory tubes. Their efferents pass to the superior deep cervical glands. They are in the retropharyngeal space." [Wikipedia:Retropharyngeal_lymph_nodes] synonym: "retropharyngeal glands" RELATED [Wikipedia:Retropharyngeal_lymph_nodes] synonym: "retropharyngeal lymph node" RELATED [Wikipedia:Retropharyngeal_lymph_nodes] synonym: "retropharyngeal node" EXACT [FMA:61237] xref: EMAPA:37724 {source="MA:th"} xref: FMA:61237 xref: MA:0003070 xref: NCIT:C77649 xref: SCTID:167263004 xref: UMLS:C0229737 xref: Wikipedia:Retropharyngeal_lymph_nodes is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0015870 name: lymph node of head def: "A lymph node that is part of a head." [OBOL:automatic] xref: FMA:61212 xref: SCTID:155136006 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0015871 name: facial lymph node def: "Any of the lymph nodes that are part of a face." [http://www.bartleby.com/107/177.html, Wikipedia:Facial_lymph_nodes] synonym: "buccal lymph node" EXACT [FMA:61222] xref: FMA:61222 xref: SCTID:279139005 xref: Wikipedia:Facial_lymph_nodes is_a: UBERON:0015870 ! lymph node of head relationship: part_of UBERON:0001456 ! face property_value: taxon_notes "In humans, these comprise three groups: (a) infraorbital or maxillary, scattered over the infraorbital region from the groove between the nose and cheek to the zygomatic arch; (b) buccinator, one or more placed on the Buccinator opposite the angle of the mouth; (c) supramandibular, on the outer surface of the mandible, in front of the Masseter and in contact with the external maxillary artery and anterior facial vein." xsd:string [Term] id: UBERON:0015872 name: mandibular lymph node def: "The mandibular lymph node is a lymph node found near the jaw." [Wikipedia:Mandibular_lymph_node] comment: Editor nodes: consider merging with submandibular, at least for mouse, see http://www.ncbi.nlm.nih.gov/pubmed/16624319 synonym: "lymphonodi mandibulares" RELATED OMO:0003011 [Wikipedia:Mandibular_lymph_node] synonym: "mandibular node" EXACT [FMA:61227] synonym: "nodus lymphoideus mandibularis" RELATED OMO:0003011 [Wikipedia:Mandibular_lymph_node] synonym: "nodus mandibularis" EXACT [FMA:TA] xref: FMA:61227 xref: MA:0003067 xref: SCTID:10664000 xref: Wikipedia:Mandibular_lymph_node is_a: UBERON:0015871 {source="FMA"} ! facial lymph node property_value: external_definition "In mice, Rostromedial to the sublingual and mandibular salivary glands." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0015873 name: heel skin def: "A zone of skin that is part of a heel." [OBOL:automatic] synonym: "skin of heel" EXACT [] xref: EMAPA:37354 {source="MA:th"} xref: MA:0003104 xref: SCTID:244185002 is_a: UBERON:0001512 ! skin of ankle relationship: part_of UBERON:0015875 ! heel [Term] id: UBERON:0015875 name: heel def: "The part of the foot that is the projection of the calcaneus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Heel] synonym: "calcaneal region" EXACT [FMA:24994] synonym: "heel region" EXACT [FMA:24994] synonym: "regio calcanea" EXACT [FMA:TA] xref: FMA:24994 xref: MESH:D006365 xref: SCTID:362804005 xref: Wikipedia:Heel is_a: UBERON:0005445 ! segment of pes relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0015876 name: pelvic lymph node def: "Any lymph node within the abdominal pelvic region." [ncithesaurus:Pelvic_Lymph_Node] synonym: "lymph node of pelvis" EXACT [FMA:12800] synonym: "pelvic node" RELATED [] xref: FMA:12800 xref: NCIT:C12363 xref: SCTID:245352009 xref: UMLS:C0729595 is_a: UBERON:0000029 ! lymph node is_a: UBERON:0005179 ! pelvic region element [Term] id: UBERON:0015877 name: parietal pelvic lymph node synonym: "paracervical lymph node" RELATED [FMA:66193] xref: FMA:66193 is_a: UBERON:0015876 {source="FMA"} ! pelvic lymph node [Term] id: UBERON:0015878 name: common iliac lymph node def: "The external iliac lymph nodes, from eight to ten in number, lie along the external iliac vessels. They are arranged in three groups, one on the lateral, another on the medial, and a third on the anterior aspect of the vessels; the third group is, however, sometimes absent. Their principal afferents are derived from the inguinal lymph nodes, the deep lymphatics of the abdominal wall below the umbilicus and of the adductor region of the thigh, and the lymphatics from the glans penis vel clitoridis, the membranous urethra, the prostate, the fundus of the urinary bladder, the cervix uteri, and upper part of the vagina." [Wikipedia:External_iliac_lymph_nodes] subset: human_reference_atlas synonym: "common iliac node" EXACT [FMA:12806] synonym: "external iliac glands" RELATED [Wikipedia:External_iliac_lymph_nodes] synonym: "external iliac lymph gland" RELATED [Wikipedia:External_iliac_lymph_nodes] synonym: "iliac lymph node" EXACT [FMA:12806] synonym: "iliac lymph node" RELATED [Wikipedia:External_iliac_lymph_nodes] synonym: "noduli iliaci superficiales" RELATED OMO:0003011 [Wikipedia:External_iliac_lymph_nodes] xref: FMA:12806 xref: MA:0003066 xref: NCIT:C32761 xref: SCTID:314889004 xref: UMLS:C0229807 xref: Wikipedia:External_iliac_lymph_nodes is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015880 name: external iliac lymph node subset: human_reference_atlas synonym: "external iliac node" EXACT [FMA:16646] xref: FMA:16646 xref: NCIT:C88143 xref: SCTID:245358008 xref: UMLS:C0229815 is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015881 name: internal iliac lymph node def: "The internal iliac lymph nodes (or hypogastric) surround the internal iliac artery and its branches (the hypogastric vessels), and receive the lymphatics corresponding to the distribution of the branches of it, i. e. , they receive lymphatics from all the pelvic viscera, from the deeper parts of the perineum, including the membranous and cavernous portions of the urethra, and from the buttock and back of the thigh. It does not receive lymph from the ovary, testis, or superior half of the rectum; the gonads drain to the paraaortic lymph nodes, while the superior half of the rectum drains to the pararectal lymph nodes." [Wikipedia:Internal_iliac_lymph_nodes] subset: human_reference_atlas synonym: "internal iliac node" EXACT [FMA:16654] xref: FMA:16654 xref: NCIT:C88142 xref: SCTID:245357003 xref: UMLS:C0447192 xref: Wikipedia:Internal_iliac_lymph_nodes is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node is_a: UBERON:8470001 ! sublumbar lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0015883 name: gluteal lymph node synonym: "gluteal node" EXACT [FMA:16657] xref: FMA:16657 xref: SCTID:276154000 is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node [Term] id: UBERON:0015884 name: presymphysial lymph node synonym: "presymphysial node" EXACT [FMA:16667] xref: FMA:16667 xref: SCTID:279448009 is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node [Term] id: UBERON:0015885 name: cymba conchae of pinna synonym: "cymba conchae of auricle" EXACT [FMA:61082] xref: FMA:61082 xref: NCIT:C32420 xref: SCTID:362545007 xref: UMLS:C0229317 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006203 {source="FMA"} ! conchal part of pinna [Term] id: UBERON:0015886 name: root of nail def: "The part of the nail plate that extends into the dermis (nail matrix)." [http://www.histology.leeds.ac.uk/skin/nails.php] synonym: "nail groove" EXACT [] synonym: "nail root" EXACT [FMA:60128] xref: FMA:60128 xref: NCIT:C33495 xref: SCTID:300732009 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001705 {source="FMA"} ! nail [Term] id: UBERON:0015895 name: proximal deep inguinal lymph node def: "One of the deep inguinal lymph nodes located in or adjacent to the femoral canal; sometimes mistaken for a femoral hernia when enlarged." [BTO:0004550] synonym: "node of Cloquet" RELATED [BTO:0004550] synonym: "nodus inguinales profundi proximalis" EXACT [FMA:TA] synonym: "nodus lymphoideus inguinales profundi proximalis" EXACT OMO:0003011 [FMA:44303, FMA:TA] synonym: "nodus lymphoideus inguinalis profundi proximalis" RELATED [BTO:0004550] synonym: "proximal deep inguinal node" EXACT [FMA:44303] synonym: "proximal inguinal lymph node" EXACT [FMA:44303] synonym: "Rosenmueller gland" RELATED [BTO:0004550] synonym: "Rosenmueller node" RELATED [BTO:0004550] synonym: "rosenmuller's gland" EXACT [FMA:44303] synonym: "rosenmuller's node" EXACT [FMA:44303] xref: BTO:0004550 xref: FMA:44303 is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node [Term] id: UBERON:0015917 name: superficial lymph node def: "A lymph node that is located close to the surface." [http://orcid.org/0000-0002-6601-2165] xref: FMA:12767 xref: NCIT:C102716 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0035549 ! vasculature of integument [Term] id: UBERON:0015918 name: deep lymph node def: "A lymph node that is located deeper within the organism, further from the surface." [http://orcid.org/0000-0002-6601-2165] xref: FMA:12768 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0015919 name: obsolete tonsillar lymph node def: "The term tonsillar node can be inaccurate or ambiguous." [PMID:16624319] synonym: "tonsillar node" EXACT [] is_obsolete: true consider: SCTID:261419004 [Term] id: UBERON:0015920 name: obsolete genital lymph node def: "The term tonsillar node can be inaccurate or ambiguous." [PMID:16624319] synonym: "genital node" EXACT [] is_obsolete: true [Term] id: UBERON:0015922 name: accessory mandibular lymph node is_a: UBERON:0015871 ! facial lymph node property_value: external_definition "Dorsolateral to the mandibular lymph node." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0015923 name: superficial parotid lymph node def: "A parotid lymph node that is located superficially." [http://orcid.org/0000-0002-6601-2165] synonym: "superficial parotid node" EXACT [FMA:61217] xref: FMA:61217 xref: SCTID:279141006 xref: Wikipedia:Superficial_parotid_lymph_nodes is_a: UBERON:0015857 ! parotid lymph node is_a: UBERON:0015917 ! superficial lymph node property_value: external_definition "Rostromedial to the sublingual and mandibular salivary glands Dorsolateral to the mandibular lymph node Ventral to the external acoustic pore, caudal to the extraorbital lacrimal gland, cranioventral to the parotid salivary gland, dorsal to the junction between the superficial temporal vein (v.) and the maxillary v.." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0015925 name: superficial intraparotid lymph node synonym: "superficial intraparotid node" EXACT [] xref: SCTID:68339009 is_a: UBERON:0015917 ! superficial lymph node is_a: UBERON:0035080 ! intraparotid lymph node [Term] id: UBERON:0015926 name: cranial deep lymph node synonym: "cranial deep node" EXACT [] is_a: UBERON:0015870 ! lymph node of head property_value: external_definition "Medial to the external jugular vein and sternocephalic muscle (m.), lateral to sternohyoid m., caudal to digastric m., dorsal to the trachea." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0016374 name: sciatic lymph node def: "A lymph node that is medial to the gluteus superficialis m., caudal to gluteus medius m. and sciatic nerve lymph node." [PMID:16624319] xref: MA:0002884 is_a: UBERON:0016398 ! lymph node of lower limb relationship: present_in_taxon NCBITaxon:10090 {source="PMID:16624319"} [Term] id: UBERON:0016378 name: ileocolic lymph node def: "One of the lymph nodes that form a chain around the ileocolic artery." [Wikipedia:Ileocolic_lymph_nodes] subset: human_reference_atlas synonym: "ileocecocolic lymph node" NARROW [MA:0003065, ncithesaurus:Ileocecocolic_Lymph_Node] synonym: "ileocolic node" RELATED [FMA:16611] synonym: "nodi lymphoidei ileocolici" EXACT OMO:0003011 [Wikipedia:Ileocolic_lymph_nodes] xref: FMA:16611 xref: MA:0003065 xref: NCIT:C77653 xref: SCTID:29180003 xref: UMLS:C2697661 xref: Wikipedia:Ileocolic_lymph_nodes is_a: UBERON:0000029 {source="MA"} ! lymph node relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "Can be subclassed based on position relative to terminal branches of the vessel. Consider adding subclasses for these: (a) ileal, in relation to the ileal branch of the artery;(b) anterior ileocolic, usually of three glands, in the ileocolic fold, near the wall of the cecum;(c) posterior ileocolic, mostly placed in the angle between the ileum and the colon, but partly lying behind the cecum at its junction with the ascending colon;(d) a single gland, between the layers of the mesenteriole of the vermiform process;(e) right colic, along the medial side of the ascending colon." xsd:string property_value: external_definition "A lymph node at the ileocecocolic junction." xsd:string {source="ncithesaurus:Ileocecocolic_Lymph_Node"} [Term] id: UBERON:0016382 name: prescapular lymph node xref: EMAPA:37723 {source="MA:th"} xref: MA:0003069 xref: NCIT:C77654 is_a: UBERON:0002429 {source="MA"} ! cervical lymph node [Term] id: UBERON:0016386 name: paraaortic lymph node def: "The paraaortic lymph nodes (also known as para-aortic, periaortic, and peri-aortic) are a group of lymph nodes that lie in front of the lumbar vertebral bodies near the aorta. These lymph nodes receive drainage from the lower gastrointestinal tract and the pelvic organs." [Wikipedia:Paraaortic_lymph_node] subset: human_reference_atlas synonym: "lateral aortic lymph node" EXACT [FMA:16604] synonym: "lateral aortic node" EXACT [FMA:16604] synonym: "latero-aortic lymph node" RELATED [FMA:16604] synonym: "lateroaortic lymph node" RELATED [FMA:16604] synonym: "left lateral aortic lymph node" RELATED [FMA:16604] synonym: "para-aortic lymph node" EXACT [FMA:16604] xref: FMA:16604 xref: MA:0003073 xref: NCIT:C77643 xref: Wikipedia:Paraaortic_lymph_node is_a: UBERON:0000029 {source="MA"} ! lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016390 name: auricular lymph node xref: MA:0003092 is_a: UBERON:0000029 {source="MA"} ! lymph node relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} [Term] id: UBERON:0016391 name: thymic lymph node xref: MA:0003118 is_a: UBERON:0000029 {source="MA"} ! lymph node [Term] id: UBERON:0016392 name: mastoid lymph node def: "The mastoid lymph nodes (retroauricular lymph nodes, posterior auricular glands), usually two in number, are situated on the mastoid insertion of the Sternocleidomastoideus, beneath the Auricularis posterior. Their afferent vessels drain the posterior part of the temporoparietal region, the upper part of the cranial surface of the auricula or pinna, and the back of the external acoustic meatus; their efferents pass to the superior deep cervical glands." [Wikipedia:Mastoid_lymph_nodes] synonym: "mastoid glands" RELATED [Wikipedia:Mastoid_lymph_nodes] synonym: "mastoid node" EXACT [FMA:61215] synonym: "postauricular lymph node" EXACT [UBERON:cjm] synonym: "posterior auricular glands" RELATED [Wikipedia:Mastoid_lymph_nodes] synonym: "retro-auricular lymph node" EXACT [FMA:61215] synonym: "retro-auricular node" EXACT [FMA:61215] synonym: "retroauricular lymph nodes" RELATED [Wikipedia:Mastoid_lymph_nodes] xref: FMA:61215 xref: SCTID:245328002 xref: SCTID:279143009 xref: Wikipedia:Mastoid_lymph_nodes is_a: UBERON:0015870 {source="FMA"} ! lymph node of head [Term] id: UBERON:0016393 name: deep parotid lymph node def: "The deep parotid lymph nodes are lymph nodes found below the parotid gland. The afferents of the subparotid glands drain the nasal part of the pharynx and the posterior parts of the nasal cavities. Their efferents pass to the superior deep cervical glands." [Wikipedia:Deep_parotid_lymph_nodes] synonym: "deep parotid node" EXACT [FMA:61218] xref: FMA:61218 xref: SCTID:279142004 xref: Wikipedia:Deep_parotid_lymph_nodes is_a: UBERON:0015857 {source="FMA"} ! parotid lymph node is_a: UBERON:0015918 ! deep lymph node relationship: never_in_taxon NCBITaxon:10090 {source="PMID:16624319"} [Term] id: UBERON:0016394 name: anterior auricular lymph node def: "The preauricular deep parotid lymph nodes (anterior auricular glands or preauricular glands), from one to three in number, lie immediately in front of the tragus. Their afferents drain the lateral surface of the auricula and the skin of the adjacent part of the temporal region; their efferents pass to the superior deep cervical glands." [Wikipedia:Preauricular_deep_parotid_lymph_nodes] synonym: "anterior auricular glands" RELATED [Wikipedia:Preauricular_deep_parotid_lymph_nodes] synonym: "pre-auricular lymph node" EXACT [FMA:61219] synonym: "pre-auricular lymph nodes" RELATED [Wikipedia:Preauricular_deep_parotid_lymph_nodes] synonym: "pre-auricular node" EXACT [FMA:61219] synonym: "preauricular glands" RELATED [Wikipedia:Preauricular_deep_parotid_lymph_nodes] synonym: "preauricular lymph node" EXACT [] synonym: "preauricular node" EXACT [FMA:61219] xref: FMA:61219 xref: NCIT:C103429 xref: SCTID:245327007 xref: Wikipedia:Preauricular_deep_parotid_lymph_nodes is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} [Term] id: UBERON:0016395 name: infra-auricular lymph node def: "The infra-auricular deep parotid lymph nodes are a group of lymph nodes found underneath the ear." [Wikipedia:Infra-auricular_deep_parotid_lymph_nodes] synonym: "infra-auricular deep node" EXACT [] synonym: "infra-auricular deep parotid lymph node" EXACT [] synonym: "infra-auricular deep parotid node" EXACT [] synonym: "infra-auricular node" EXACT [FMA:61220] xref: FMA:61220 xref: SCTID:22509006 xref: Wikipedia:Infra-auricular_deep_parotid_lymph_nodes is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node [Term] id: UBERON:0016396 name: intraglandular lymph node synonym: "intraglandular node" EXACT [FMA:61221] xref: FMA:61221 is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node [Term] id: UBERON:0016397 name: submental lymph node def: "The submental lymph nodes (or suprahyoid) are situated between the anterior bellies of the Digastrici. Their afferents drain the central portions of the lower lip and floor of the mouth and the apex of the tongue. Their efferents pass partly to the submandibular lymph nodes and partly to a gland of the deep cervical group situated on the internal jugular vein at the level of the cricoid cartilage." [Wikipedia:Submental_lymph_nodes] synonym: "level Ia neck node" EXACT [FMA:61229] synonym: "submental glands" RELATED [Wikipedia:Submental_lymph_nodes] synonym: "submental node" EXACT [FMA:61229] synonym: "suprahyoid glands" RELATED [Wikipedia:Submental_lymph_nodes] xref: FMA:61229 xref: SCTID:245318006 xref: Wikipedia:Submental_lymph_nodes is_a: UBERON:0015870 {source="FMA"} ! lymph node of head relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} [Term] id: UBERON:0016398 name: lymph node of lower limb def: "A lymph node that is part of a hindlimb." [OBOL:automatic] xref: FMA:44310 xref: SCTID:361109000 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0016399 name: lymph node of upper limb def: "A lymph node that is part of a forelimb." [OBOL:automatic] xref: FMA:44311 xref: SCTID:276155004 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0016400 name: infrapatellar fat pad def: "The infrapatellar fat pad, also known as Hoffa's fat pad, is a cylindrical piece of fat that is situated under and behind the patella bone within the knee." [Wikipedia:Infrapatellar_fat_pad] xref: FMA:58772 xref: SCTID:282128003 xref: Wikipedia:Infrapatellar_fat_pad is_a: UBERON:0003577 ! knee connective tissue is_a: UBERON:0003916 ! fat pad [Term] id: UBERON:0016401 name: pancreaticoduodenal lymph node synonym: "pancreaticoduodenal node" EXACT [FMA:16623] xref: FMA:16623 xref: SCTID:281152007 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node is_a: UBERON:0017672 ! abdominal viscera relationship: present_in_taxon NCBITaxon:10090 {source="PMID:16624319"} property_value: external_definition "Single (unpaired) lymph node in the mesoduodenum, dorsal to the portal vein, surrounded by pancreatic tissue" xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0016402 name: mesocolic lymph node subset: human_reference_atlas xref: FMA:300965 xref: Wikipedia:Mesocolic_lymph_nodes is_a: UBERON:0039168 {source="FMA"} ! colic lymph node relationship: present_in_taxon NCBITaxon:10090 {source="PMID:16624319"} relationship: present_in_taxon NCBITaxon:9606 property_value: external_definition "Colic lymph node: A mesocolic lymph node that is located along the arteries supplying the colon" xsd:string {source="Wikipedia:Mesocolic_lymph_nodes"} property_value: external_definition "colic lymph nodes: those mesocolic lymph nodes located along the arteries supplying the colon." xsd:string {source="http://www.medilexicon.com"} property_value: external_definition "In the mesocolon at the transition between ascending colon and transverse colon" xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} property_value: external_definition "mesocolic lymph nodes: nodes located in the mesocolon; they are of two classes: paracolic lymph nodes, located in immediate proximity to the colon; colic lymph nodes located along the arteries supplying the colon." xsd:string {source="http://www.medilexicon.com"} [Term] id: UBERON:0016403 name: thoracic wall def: "The thoracic wall (or chest wall) is the boundary of the thoracic cavity. The bony portion is known as the thoracic cage. However, the wall also includes muscle, skin, and fascia." [Wikipedia:Thoracic_wall] synonym: "chest wall" RELATED [Wikipedia:Thoracic_wall] xref: FMA:10428 xref: MESH:D035441 xref: Wikipedia:Thoracic_wall is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0000915 ! thoracic segment of trunk property_value: external_definition "Subdivision of chest wall which includes the ribcage, muscle group of thoracic wall and costal pleura. Examples: There is only one thoracic wall[FMA:10428]." xsd:string {source="FMA:10428"} [Term] id: UBERON:0016404 name: cervical vertebral arch joint def: "A vertebral arch joint that is part of a cervical region of vertebral column." [OBOL:automatic] subset: pheno_slim synonym: "cervical facet joint" EXACT [FMA:13668] synonym: "joint of cervical vertebral arch" EXACT [FMA:13668] synonym: "joint of cervical vertebral articular process" EXACT [FMA:13668] synonym: "zygapophyseal joint of cervical vertebrae" EXACT [FMA:13668] synonym: "zygapophysial joint of cervical vertebrae" EXACT [FMA:13668] xref: FMA:13668 is_a: UBERON:0001067 ! vertebral arch joint relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: UBERON:0016405 name: pulmonary capillary def: "A capillary that is part of a lung." [OBOL:automatic] subset: human_reference_atlas subset: pheno_slim synonym: "capillary of lung" EXACT [FMA:14121] xref: FMA:14121 is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0003526 ! respiratory system capillary relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016408 name: corona of glans penis def: "The circumference of the base of the glans forms a rounded projecting border, the corona of the glans penis, overhanging a deep retroglandular sulcus, behind which is the neck of the penis." [Wikipedia:Corona_of_glans_penis] subset: pheno_slim synonym: "corona glandis" RELATED OMO:0003011 [Wikipedia:Corona_of_glans_penis] synonym: "corona of penis" EXACT [] synonym: "glans corona" EXACT [FMA:19627] xref: FMA:19627 xref: SCTID:362274002 xref: Wikipedia:Corona_of_glans_penis is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis [Term] id: UBERON:0016409 name: base of glans penis subset: pheno_slim synonym: "glans penile base" EXACT [FMA:19649] xref: FMA:19649 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis [Term] id: UBERON:0016410 name: male breast def: "A breast that is part of a male organism." [OBOL:automatic] subset: pheno_slim synonym: "mamma masculina" EXACT [FMA:19901] xref: FMA:19901 xref: NCIT:C33048 xref: UMLS:C0222604 is_a: UBERON:0000310 ! breast relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0016411 name: obsolete intergluteal cleft is_obsolete: true consider: UBERON:0036013 consider: UBERON:0036014 [Term] id: UBERON:0016412 name: central part of body of bony vertebral centrum subset: pheno_slim synonym: "central part of body of vertebra" EXACT [FMA:24003] xref: FMA:24003 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001075 {source="FMA"} ! bony vertebral centrum [Term] id: UBERON:0016413 name: medullary cavity of long bone subset: pheno_slim synonym: "central medullary cavity of long bone" RELATED [FMA:24023] xref: FMA:24023 is_a: UBERON:0002484 ! bone marrow cavity relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:0016416 name: anterior chest def: "Subdivision of thorax which is anterior to the plane of the posterior boundary of the middle mediastinum." [FMA:24816] subset: pheno_slim synonym: "anterior thoracic region" EXACT [FMA:24816] synonym: "front of chest" EXACT [FMA:24816] synonym: "ventral chest" EXACT [HP:0007542] xref: FMA:24816 xref: SCTID:182331006 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001443 {source="FMA"} ! chest [Term] id: UBERON:0016418 name: nasion def: "The intersection of the frontal and two nasal bones of the human skull. Its manifestation on the visible surface of the face is a distinctly depressed area directly between the eyes, just superior to the bridge of the nose." [Wikipedia:Nasion] subset: pheno_slim xref: FMA:264779 xref: Wikipedia:Nasion is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0016419 name: bony part of vertebral arch synonym: "bony part of arch of vertebra" EXACT [FMA:29741] xref: FMA:29741 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0003861 {source="FMA"} ! neural arch [Term] id: UBERON:0016422 name: compact bone of long bone def: "A compact bone tissue that is part of a bone tissue of long bone." [OBOL:automatic] subset: pheno_slim xref: FMA:32674 is_a: UBERON:0001439 ! compact bone tissue is_a: UBERON:0005808 ! bone tissue of long bone relationship: part_of UBERON:0005808 ! bone tissue of long bone [Term] id: UBERON:0016423 name: compact bone of diaphysis def: "A compact bone tissue that is part of a diaphysis." [OBOL:automatic] subset: pheno_slim xref: FMA:32678 is_a: UBERON:0001439 ! compact bone tissue is_a: UBERON:0005808 ! bone tissue of long bone relationship: part_of UBERON:0004769 ! diaphysis [Term] id: UBERON:0016425 name: epiphyseal plate of radius def: "An epiphyseal plate that is part of a radius bone." [OBOL:automatic] subset: pheno_slim xref: FMA:34354 is_a: UBERON:0002516 ! epiphyseal plate is_a: UBERON:0004268 ! lower arm connective tissue is_a: UBERON:0007390 ! pectoral appendage cartilage tissue relationship: part_of UBERON:0001423 ! radius bone [Term] id: UBERON:0016426 name: proximal interphalangeal joint of little finger subset: pheno_slim xref: FMA:35324 is_a: UBERON:0007732 ! interphalangeal joint of manual digit 5 is_a: UBERON:0009767 ! proximal interphalangeal joint [Term] id: UBERON:0016430 name: palmar branch of median nerve def: "The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence." [http://medical-dictionary.thefreedictionary.com/palmar+branch+of+median+nerve, Wikipedia:Palmar_branch_of_the_median_nerve] subset: human_reference_atlas subset: pheno_slim synonym: "median nerve palmar branch" EXACT [FMA:44836] synonym: "palmar branch of anterior interosseous nerve" EXACT [FMA:44836] synonym: "palmar cutaneous branch of median nerve" EXACT [FMA:44836] synonym: "ramus palmaris (nervus medianus)" EXACT OMO:0003011 [FMA:44836] synonym: "ramus palmaris nervus interossei antebrachii anterior" EXACT OMO:0003011 [FMA:44836, FMA:TA] xref: FMA:44836 xref: Wikipedia:Palmar_branch_of_the_median_nerve is_a: UBERON:0003433 ! arm nerve relationship: present_in_taxon NCBITaxon:9606 property_value: structure_notes "does not pass through the carpal tunnel" xsd:string [Term] id: UBERON:0016435 name: chest wall def: "Subdivision of thorax which includes all structures from the skin to the costal pleura. Examples: There is only one chest wall." [FMA:50060] subset: pheno_slim xref: EMAPA:37233 {source="MA:th"} xref: FMA:50060 xref: MESH:D035441 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C62484 xref: SCTID:181608004 is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0016440 name: glabella region of bone def: "A zone of the frontal bone that connects the supraorbital rirdges." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Glabella] subset: pheno_slim synonym: "glabella" BROAD [FMA:52851] synonym: "glabellar surface of frontal bone" EXACT [FMA:57136] xref: FMA:52851 xref: FMA:57136 xref: SCTID:137561005 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: part_of UBERON:0034766 ! glabella region [Term] id: UBERON:0016442 name: median palatine suture def: "The line of junction between the horizontal parts of the palatine bones that extends from both sides of the skull to form the posterior part of the hard palate." [http://medical-dictionary.thefreedictionary.com/median+palatine+suture] subset: pheno_slim synonym: "median palatine suture of skull" EXACT [FMA:52966] synonym: "middle palatine suture of skull" EXACT [FMA:52966] synonym: "midpalatal suture of skull" EXACT [FMA:52966] xref: FMA:52966 is_a: UBERON:0035127 ! suture of hard palate [Term] id: UBERON:0016446 name: hair of head def: "A strand of hair that is part of a head." [OBOL:automatic] subset: pheno_slim synonym: "hair of scalp" NARROW [FMA:54241] synonym: "head hair" EXACT [FMA:54241] xref: FMA:54241 is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0016447 name: hair of trunk def: "A strand of hair that is part of a trunk." [OBOL:automatic] subset: pheno_slim synonym: "trunk hair" EXACT [FMA:54250] xref: FMA:54250 is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0016452 name: upper secondary premolar tooth subset: pheno_slim synonym: "maxillary secondary premolar tooth" EXACT [FMA:55716] synonym: "permanent upper premolar tooth" RELATED [FMA:55716] synonym: "secondary upper premolar tooth" RELATED [FMA:55716] synonym: "upper permanent premolar tooth" EXACT [FMA:55716] xref: FMA:55716 is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth is_a: UBERON:0018613 ! secondary upper tooth [Term] id: UBERON:0016453 name: lower secondary premolar tooth subset: pheno_slim synonym: "lower permanent premolar tooth" EXACT [FMA:55717] synonym: "mandibular secondary premolar tooth" EXACT [FMA:55717] synonym: "permanent lower premolar tooth" RELATED [FMA:55717] xref: FMA:55717 is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth is_a: UBERON:0018614 ! permanent lower tooth [Term] id: UBERON:0016454 name: upper central secondary incisor tooth subset: pheno_slim synonym: "I1" RELATED OMO:0003000 [] synonym: "maxillary central permanent incisor tooth" EXACT [] synonym: "maxillary central secondary incisor tooth" EXACT [FMA:55722] synonym: "permanent upper central incisor tooth" RELATED [FMA:55722] synonym: "secondary upper first incisor tooth" EXACT [] synonym: "upper central permanent incisor tooth" EXACT [FMA:55722] xref: FMA:55722 is_a: UBERON:0018603 ! upper central incisor tooth is_a: UBERON:0019253 ! upper secondary incisor tooth [Term] id: UBERON:0016455 name: upper lateral secondary incisor tooth subset: pheno_slim synonym: "I2" RELATED OMO:0003000 [] synonym: "maxillary lateral secondary incisor tooth" EXACT [FMA:55724] synonym: "secondary upper second incisor tooth" EXACT [] synonym: "upper lateral permanent incisor tooth" EXACT [FMA:55724] xref: FMA:55724 is_a: UBERON:0018604 ! upper lateral incisor tooth is_a: UBERON:0019253 ! upper secondary incisor tooth property_value: seeAlso "https://github.com/obophenotype/uberon/issues/557" xsd:anyURI [Term] id: UBERON:0016458 name: esophageal hiatus def: "A hole in the diaphragm through which the esophagus passes." [HP:0002036] subset: pheno_slim synonym: "esophageal hiatus of diaphragm" EXACT [FMA:58289] synonym: "oesophageal aperture" EXACT [FMA:58289] synonym: "oesophageal hiatus" EXACT [FMA:58289] xref: FMA:58289 is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0016459 name: posterior pole of lens def: "The central point on the posterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php?t=70707] subset: pheno_slim synonym: "polus posterior (lens)" EXACT [FMA:58898] synonym: "polus posterior lentis" EXACT OMO:0003011 [] xref: FMA:58898 xref: NCIT:C33375 xref: SCTID:302144008 is_a: UBERON:0019210 ! pole of lens [Term] id: UBERON:0016462 name: periorbital skin def: "A zone of skin in the periorbital region of the face." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "skin of orbital part of face" EXACT [FMA:59350] xref: EMAPA:37937 {source="MA:th"} xref: FMA:59350 is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0004090 ! periorbital region [Term] id: UBERON:0016464 name: dorsum of nose def: "The midline prominence of the nose, extending from the nasal root to the tip." [HP:0011119] subset: pheno_slim synonym: "nasal dorsum" EXACT [FMA:59517] synonym: "nasal ridge" RELATED [HP:0011119] xref: FMA:59517 xref: SCTID:368114008 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] id: UBERON:0016466 name: antihelix def: "On the pinna, a curved prominence of cartilage, parallel with and in front of the helix, is called the antihelix, also known as the anthelix; this divides above into two crura, the crura antihelicis, between which is a triangular depression, the fossa triangularis." [Wikipedia:Antihelix] subset: pheno_slim synonym: "anthelix" RELATED [Wikipedia:Antihelix] synonym: "antihelical part of pinna" EXACT [FMA:60995] synonym: "antihelix (auricula)" EXACT [FMA:60995] synonym: "antihelix of pinna" EXACT [FMA:60995] xref: FMA:60995 xref: NCIT:C32120 xref: SCTID:279612003 xref: UMLS:C0229308 xref: Wikipedia:Antihelix is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0016612 {source="http://php.med.unsw.edu.au"} ! auditory hillocks, pharyngeal arch 2 derived relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0016467 name: antitragus def: "The antitragus is a feature of human ear anatomy. It is a small tubercle that points anteriorly. It is separated from the tragus by the intertragic notch." [Wikipedia:Antitragus] subset: pheno_slim synonym: "antitragal part of pinna" EXACT [FMA:61001] xref: FMA:61001 xref: NCIT:C32121 xref: SCTID:362543000 xref: UMLS:C0229314 xref: Wikipedia:Antitragus is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0016612 {source="http://php.med.unsw.edu.au"} ! auditory hillocks, pharyngeal arch 2 derived relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0016475 name: skin of forehead def: "A zone of skin that is part of a forehead." [OBOL:automatic] subset: pheno_slim synonym: "forehead skin" EXACT [FMA:63883] xref: EMAPA:37952 {source="MA:th"} xref: FMA:63883 is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0008200 ! forehead [Term] id: UBERON:0016476 name: primary incisor tooth def: "An incisor tooth that is part of a primary dentition." [OBOL:automatic] subset: pheno_slim synonym: "deciduous incisor tooth" EXACT [FMA:84200] synonym: "temporary incisor tooth" EXACT [FMA:84200] xref: FMA:84200 xref: SCTID:51528000 is_a: UBERON:0001098 ! incisor tooth is_a: UBERON:0007115 ! deciduous tooth [Term] id: UBERON:0016477 name: zygomatic process of maxilla def: "The zygomatic process of the maxilla (malar process) is a rough triangular eminence, situated at the angle of separation of the anterior, zygomatic, and orbital surfaces. In front it forms part of the anterior surface. Behind it is concave, and forms part of the infratemporal fossa. Above it is rough and serrated for articulation with the zygomatic bone. Below it presents the prominent arched border which marks the division between the anterior and infratemporal surfaces." [Wikipedia:Zygomatic_process_of_maxilla] subset: human_reference_atlas synonym: "malar process" BROAD [Wikipedia:Zygomatic_process_of_maxilla] synonym: "malar process of maxilla" EXACT [Wikipedia:Zygomatic_process_of_maxilla] synonym: "processus zygomaticus (maxilla)" EXACT [FMA:52895] synonym: "processus zygomaticus maxillae" EXACT OMO:0003011 [FMA:52895, FMA:TA] synonym: "zygomatic appendage of maxilla" RELATED [FMA:52895] synonym: "zygomaticoorbital process of maxilla" EXACT [FMA:52895] xref: FMA:52895 xref: SCTID:272684007 xref: Wikipedia:Zygomatic_process_of_maxilla is_a: UBERON:0004529 {source="FMA"} ! anatomical projection relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016478 name: liver stroma def: "A stroma that is part of a liver." [OBOL:automatic] subset: human_reference_atlas synonym: "hepatic stroma" EXACT [FMA:17553] synonym: "stroma of liver" EXACT [FMA:17553] xref: FMA:17553 is_a: UBERON:0003891 ! stroma relationship: part_of UBERON:0002107 ! liver relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016479 name: capsule of liver def: "A collagenous capsule covering the external surface of the liver." [Wikipedia:Fibrous_capsule_of_Glisson] synonym: "capsula fibrosa perivascularis" EXACT OMO:0003011 [Wikipedia:Fibrous_capsule_of_Glisson] synonym: "fibrous capsule of Glisson" RELATED [Wikipedia:Fibrous_capsule_of_Glisson] synonym: "fibrous capsule of liver" EXACT [FMA:15813] synonym: "glisson's capsule" EXACT [FMA:15813] synonym: "hepatic capsule" EXACT [FMA:15813] synonym: "liver capsule" RELATED [Wikipedia:Fibrous_capsule_of_Glisson] synonym: "tunica fibrosa (hepar)" EXACT [FMA:TA] synonym: "tunica fibrosa hepatis" EXACT OMO:0003011 [FMA:15813, FMA:TA] xref: FMA:15813 xref: SCTID:362185005 xref: Wikipedia:Fibrous_capsule_of_Glisson is_a: UBERON:0003893 ! capsule property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: structure_notes "It consists of type III collagen and extends to the stroma of endothelial sinusoids. It is covered by a single layer of mesothelial cells." xsd:string [Term] id: UBERON:0016480 name: interlobular stroma of liver subset: pheno_slim xref: FMA:17525 is_a: UBERON:0016478 {source="FMA"} ! liver stroma [Term] id: UBERON:0016481 name: bronchial lymph node def: "A lymph node that is part of a bronchus." [OBOL:automatic] xref: MA:0003078 xref: NCIT:C32232 xref: UMLS:C1305372 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0016482 name: dental plaque def: "A soft, thin film of food debris, mucin, and dead epithelial cells deposited on the teeth, providing the medium for the growth of various bacteria. The main inorganic components are calcium and phosphorus, with small amounts of magnesium, potassium, and sodium; the organic matrix consists of polysaccharides, proteins, carbohydrates, lipids, and other components. Plaque plays an important etiologic role in the development of dental caries and periodontal and gingival diseases and provides the base for the development of materia alba; calcified plaque forms dental calculus." [BTO:0000338, Dorlands_Medical_Dictionary:MerckSource] synonym: "bacterial plaque" RELATED [BTO:0000338] synonym: "plaque" RELATED [http://orcid.org/0000-0002-6601-2165] xref: BTO:0000338 xref: MESH:D003773 xref: Wikipedia:Dental_plaque is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0016484 name: subgingival dental plaque synonym: "subgingival plaque" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0016482 ! dental plaque [Term] id: UBERON:0016485 name: supragingival dental plaque synonym: "supragingival plaque" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0016482 ! dental plaque [Term] id: UBERON:0016486 name: posterior fornix of vagina def: "The vaginal fornix that is behind the cervix. It is close to the recto-uterine pouch." [Wikipedia:Vaginal_fornix] synonym: "pars posterior fornicis vaginae" EXACT [FMA:TA] synonym: "posterior fornix" BROAD [] synonym: "posterior part of fornix of vagina" EXACT [FMA:19987] xref: FMA:19987 xref: SCTID:245477006 is_a: UBERON:0000051 {source="FMA"} ! fornix of vagina [Term] id: UBERON:0016487 name: anterior fornix of vagina def: "The vaginal fornix that is front of the cervix. It is close to the vesico-uterine pouch." [Wikipedia:Vaginal_fornix] synonym: "anterior fornix" BROAD [] synonym: "anterior part of fornix of vagina" EXACT [FMA:19986] synonym: "pars anterior fornicis vaginae" EXACT OMO:0003011 [FMA:TA] xref: FMA:19986 xref: SCTID:245476002 is_a: UBERON:0000051 {source="FMA"} ! fornix of vagina [Term] id: UBERON:0016490 name: auditory system def: "Is the sensory system for the sense of hearing." [NLXANAT:090817] xref: EMAPA:36002 xref: FMA:7192 xref: MA:0002443 xref: NCIT:C12889 xref: neuronames:2888 xref: NLXANAT:090817 xref: UMLS:C0587901 {source="ncithesaurus:Auditory_System"} xref: Wikipedia:Auditory_system is_a: UBERON:0007037 ! mechanosensory system relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: external_ontology_notes "Auditory system is general anatomical term in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0016491 name: vertebral centrum element def: "Skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/207, https://github.com/obophenotype/uberon/issues/80, VSAO:0000183, VSAO:curator] synonym: "centrum" BROAD [VSAO:0000183] synonym: "centrum of vertebra" EXACT [] xref: VSAO:0000183 is_a: UBERON:0004765 {source="VSAO"} ! skeletal element relationship: part_of UBERON:0010913 {source="VSAO"} ! vertebral element property_value: external_definition "Skeletal element that surrounds the notochord.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000183", ontology="VSAO", source="VSAO:curator"} property_value: external_definition "the main cylindrical portion of the vertebra ventral to the vertebral canal" xsd:string {source="MP:0000141,ISBN:0-683-40008-8,PMID:10572046"} property_value: taxon_notes "The vertebral centrum may be cartilaginous, develop as cartilage but be replaced by bone or mineralized, or form directly through intramembranous ossification." xsd:string [Term] id: UBERON:0016492 name: foramen spinosum of sphenoid bone def: "A foramen in the sphenoid bone through which the middle meningeal artery, middle meningeal vein, and the meningeal branch of the mandibular nerve pass." [Wikipedia:Foramen_spinosum] subset: human_reference_atlas synonym: "foramen spinosum" EXACT OMO:0003011 [FMA:53156, Wikipedia:Foramen_spinosum] xref: FMA:53156 xref: SCTID:369440000 xref: Wikipedia:Foramen_spinosum is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001677 ! sphenoid bone relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016493 name: palmaris longus muscle def: "The palmaris longus is seen as a small tendon between the flexor carpi radialis and the flexor carpi ulnaris, although it is not always present. The muscle is absent in about 14 percent of the population, however this varies greatly with ethnicity. Absence of palmaris does not have any known effect on grip strength. Palmaris longus can be palpated by touching the pads of the fifth and first fingers and flexing the wrist. The tendon, if present, will be very visible." [Wikipedia:Palmaris_longus_muscle] subset: human_reference_atlas synonym: "musculus palmaris longus" EXACT OMO:0003011 [Wikipedia:Palmaris_longus_muscle] synonym: "palmaris" BROAD [] synonym: "palmaris longus" EXACT [FMA:38462] xref: AAO:0010737 xref: EMAPA:36205 xref: FMA:38462 xref: SCTID:181636009 xref: Wikipedia:Palmaris_longus_muscle is_a: UBERON:0003662 ! forelimb muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016496 name: tendon of palmaris longus synonym: "palmaris longus tendon" EXACT [FMA:38594] synonym: "tendon of palmaris longus muscle" RELATED [FMA:38594] xref: FMA:38594 is_a: UBERON:0000043 {source="FMA"} ! tendon is_a: UBERON:0003575 ! wrist connective tissue [Term] id: UBERON:0016497 name: epicondyle of humerus def: "An epicondyle that is part of a humerus." [OBOL:automatic] xref: FMA:321693 xref: NCIT:C114187 xref: SCTID:272693008 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 ! epicondyle relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0016498 name: intestinal-cloacal junction def: "The juncture where the intestine empties into the cloaca." [ZFA:0005782] synonym: "gut opening" RELATED [ZFA:0005782] synonym: "intestinal opening" EXACT [ZFA:0005782] xref: ZFA:0005782 is_a: UBERON:1100000 ! digestive tract junction [Term] id: UBERON:0016499 name: esophageal-pneumatic duct sphincter def: "Sphincter at the junction of the esophagus and pneumatic duct." [ZFA:0000415, ZFA:CVS, ZFA:YMB] synonym: "oesophagial sphincter" RELATED [ZFA:0000415] xref: TAO:0000415 xref: ZFA:0000415 is_a: UBERON:0007652 ! esophageal sphincter [Term] id: UBERON:0016500 name: muscularis mucosa of fundus of urinary bladder def: "A muscularis mucosa that is part of a fundus of urinary bladder." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:28625 is_a: UBERON:0006912 ! urinary bladder muscularis mucosa relationship: part_of UBERON:0006082 ! fundus of urinary bladder relationship: part_of UBERON:0006912 {source="EMAPA"} ! urinary bladder muscularis mucosa relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016501 name: muscularis mucosae of fundus of stomach def: "A muscularis mucosa that is part of a fundus of stomach." [OBOL:automatic] xref: EMAPA:27165 xref: FMA:17278 is_a: UBERON:0001203 ! muscularis mucosae of stomach relationship: part_of UBERON:0001203 {source="FMA"} ! muscularis mucosae of stomach relationship: part_of UBERON:0004994 {source="FMA"} ! mucosa of fundus of stomach [Term] id: UBERON:0016502 name: stomach fundus lumen def: "An anatomical space that is enclosed by a fundus of stomach." [OBOL:automatic] synonym: "cavity of fundus of stomach" EXACT [FMA:17077] synonym: "lumen of fundus of stomach" EXACT [FMA:17077] synonym: "lumen of stomach fundus" EXACT [] xref: EMAPA:18382 xref: FMA:17077 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0016504 name: umbilical ring def: "A dense fibrous ring surrounding the umbilicus at birth. At about the sixth week of embryological development, the midgut herniates through the umbilical ring; four weeks later it returns to the abdominal cavity and rotates around the superior mesenteric artery." [Wikipedia:Umbilical_ring] xref: EMAPA:31868 xref: FMA:19930 xref: SCTID:368065003 xref: Wikipedia:Umbilical_ring is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0000478 {source="EMAPA"} ! extraembryonic structure [Term] id: UBERON:0016505 name: Mullerian tubercle def: "An elevation on the wall of the embryonic urogenital sinus where the Müllerian ducts enter." [http://www.merriam-webster.com/medical/m%C3%BCllerian%20tubercle] synonym: "Muellerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "mullerian tubercle" EXACT [FMA:72175] synonym: "Müllerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:18328 xref: FMA:72175 xref: MA:0003239 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000164 ! primitive urogenital sinus relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0016508 name: pelvic ganglion subset: human_reference_atlas synonym: "inferior hypogastric ganglion" EXACT [FMA:80131] synonym: "pelvic ganglia" RELATED OMO:0003004 [] xref: EMAPA:31527 xref: FMA:80131 xref: SCTID:324760006 is_a: UBERON:0003964 {source="FMA"} ! prevertebral ganglion relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016509 name: cavity of right ventricle def: "Luminal space of the right ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "right ventricle lumen" EXACT [EMAPA:26047] synonym: "right ventricular cavity" EXACT [FMA:FMA] xref: EMAPA:26047 xref: FMA:9291 is_a: UBERON:0035763 ! cavity of cardiac chamber [Term] id: UBERON:0016510 name: epithelium of male urethra def: "An epithelium that is part of a male urethra." [OBOL:automatic] synonym: "male urethral epithelium" EXACT [FMA:FMA] synonym: "urethral epithelium of male" EXACT [EMAPA:30467] xref: EMAPA:30467 xref: FMA:19684 is_a: UBERON:0002325 ! epithelium of urethra relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0016511 name: lamina propria of fundus of stomach def: "A lamina propria that is part of a mucosa of fundus of stomach." [OBOL:automatic] synonym: "lamina propria mucosae of fundus of stomach" EXACT [FMA:FMA] xref: EMAPA:27163 xref: FMA:17500 is_a: UBERON:8600138 ! stomach lamina propria relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach [Term] id: UBERON:0016512 name: lumen of duodenum def: "An anatomical space that is part of a duodenum." [OBOL:automatic] synonym: "doudenal lumen" EXACT [FMA:FMA] synonym: "duodenal lumen" EXACT [FMA:FMA] xref: EMAPA:19080 xref: FMA:14589 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0016513 name: cavity of left atrium def: "Luminal space of the left atrium of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "left atrial cavity" EXACT [FMA:FMA] synonym: "left atrium lumen" EXACT [EMAPA:26011] xref: EMAPA:26011 xref: FMA:9465 is_a: UBERON:0035763 ! cavity of cardiac chamber [Term] id: UBERON:0016514 name: cavity of left ventricle def: "Luminal space of the left ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "left ventricular cavity" EXACT [FMA:FMA] xref: EMAPA:26038 xref: FMA:9466 is_a: UBERON:0035763 ! cavity of cardiac chamber [Term] id: UBERON:0016515 name: muscular layer of prostatic urethra def: "A muscular coat that is part of a prostatic urethra." [OBOL:automatic] synonym: "muscle layer of prostatic part of urethra" EXACT [FMA:FMA] synonym: "muscle layer of prostatic urethra" EXACT [EMAPA:30956, FMA:FMA] synonym: "muscular coat of prostatic urethra" EXACT [FMA:FMA] xref: EMAPA:30956 xref: FMA:19699 is_a: UBERON:0006660 ! muscular coat relationship: part_of UBERON:0001335 ! prostatic urethra [Term] id: UBERON:0016516 name: lamina propria of prostatic urethra def: "A lamina propria that is part of a prostatic urethra." [OBOL:automatic] synonym: "lamina propria of prostatic part of urethra" EXACT [FMA:FMA] synonym: "lamina propria of prostatic urethra" EXACT [EMAPA:32303] xref: EMAPA:32303 xref: FMA:19693 is_a: UBERON:0002326 ! lamina propria of urethra relationship: part_of UBERON:0001335 ! prostatic urethra [Term] id: UBERON:0016517 name: lumen of jejunum def: "An anatomical space that is part of a jejunum." [OBOL:automatic] synonym: "jejunal lumen" EXACT [FMA:FMA] synonym: "jejunum lumen" EXACT [FMA:FMA] xref: EMAPA:18729 xref: FMA:14590 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0016519 name: muscularis mucosae of jejunum def: "A muscularis mucosa that is part of a jejunum." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:27121 xref: FMA:15063 is_a: UBERON:0001210 ! muscularis mucosae of small intestine relationship: part_of UBERON:0000399 {source="FMA"} ! jejunal mucosa relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016520 name: epithelium of female urethra def: "An epithelium that is part of a female urethra." [OBOL:automatic] synonym: "female urethral epithelium" EXACT [FMA:FMA] synonym: "urethral epithelium of female" EXACT [EMAPA:30470] xref: EMAPA:30470 xref: FMA:19774 is_a: UBERON:0002325 ! epithelium of urethra relationship: part_of UBERON:0001334 ! female urethra [Term] id: UBERON:0016522 name: cavity of right atrium def: "Luminal space of the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165] synonym: "right atrial cavity" EXACT [FMA:FMA] xref: EMAPA:26020 xref: FMA:11359 is_a: UBERON:0035763 ! cavity of cardiac chamber [Term] id: UBERON:0016524 name: muscle layer of spongiose part of urethra def: "A muscular coat that is part of a spongiose part of urethra." [OBOL:automatic] synonym: "muscle layer of penile urethra" EXACT [EMAPA:30950, FMA:FMA] synonym: "muscle layer of spongy urethra" EXACT [FMA:FMA] synonym: "muscular coat of spongy urethra" EXACT [FMA:FMA] synonym: "muscular layer of spongy urethra" EXACT [FMA:FMA] synonym: "tunica muscularis urethrae spongiosa" EXACT OMO:0003011 [FMA:19701, FMA:TA] xref: EMAPA:30950 xref: FMA:19701 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat relationship: part_of UBERON:0001337 ! spongiose part of urethra [Term] id: UBERON:0016525 name: frontal lobe def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [FMA:61824] subset: efo_slim subset: human_reference_atlas synonym: "frontal cortex" NARROW [FMA:61824] synonym: "frontal region" BROAD [FMA:61824] synonym: "lobi frontales" EXACT OMO:0003011 [NeuroNames:56] synonym: "lobus frontalis" EXACT OMO:0003011 [Wikipedia:Frontal_lobe] synonym: "regio frontalis" BROAD OMO:0003011 [FMA:61824, FMA:TA] xref: BAMS:Frontal_lobe xref: BIRNLEX:928 xref: BM:Tel-Cx-FR xref: CALOHA:TS-0389 xref: DHBA:12113 xref: EFO:0000913 xref: EV:0100167 xref: FMA:61824 xref: HBA:4009 xref: MAT:0000505 xref: MESH:D005625 xref: NCIT:C12352 xref: neuronames:56 {source="BIRNLEX:928"} xref: SCTID:180920004 xref: UMLS:C0016733 {source="BIRNLEX:928", source="ncithesaurus:Frontal_Lobe"} xref: UMLS:C1268977 {source="BIRNLEX:928"} is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though" xsd:string {source="MM"} [Term] id: UBERON:0016526 name: lobe of cerebral hemisphere alt_id: UBERON:0000322 def: "Subdivision of telencephalon which is one of a number of subdivisions of each hemisphere separated by both real landmarks (sulci and fissures) and arbitrary boundaries[FMA,modified]." [FMA:61823] comment: We use the term lobe broadly as a rough regional area, encompassing homologous regions in smooth-brained mammals. We subdivide the lobes into white matter and neocortical parts. synonym: "cerebral cortical segment" RELATED [FMA:68603] synonym: "cerebral hemisphere lobe" EXACT [FMA:61823] synonym: "cerebral lobe" EXACT [BTO:0000445] synonym: "lobe of cerebral cortex" EXACT [BIRNLEX:922] synonym: "lobe parts of cerebral cortex" EXACT [BIRNLEX:922] synonym: "lobes of the brain" RELATED [BIRNLEX:922] synonym: "lobi cerebri" EXACT OMO:0003011 [FMA:77800, FMA:TA] synonym: "regional organ part of cerebral cortex" RELATED [FMA:68603] synonym: "segment of cerebral cortex" RELATED [BIRNLEX:922] xref: BIRNLEX:922 xref: BTO:0000445 xref: FMA:61823 xref: neuronames:1210 xref: SCTID:272632001 is_a: UBERON:0000064 ! organ part relationship: fma_set_term FMA:77800 relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0016527 name: white matter of cerebral lobe xref: FMA:256176 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere [Term] id: UBERON:0016528 name: white matter of frontal lobe def: "A white matter of cerebral lobe that is part of a frontal lobe." [OBOL:automatic] synonym: "frontal lobe white matter" EXACT [] xref: FMA:256178 xref: SCTID:362331002 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0016529 name: cortex of cerebral lobe def: "Grey matter neocortex region of a lobe of the cerebral hemisphere." [http://orcid.org/0000-0002-6601-2165] synonym: "cortex of cerebral hemisphere lobe" EXACT [FMA:242197] synonym: "cortex of lobe of cerebral hemisphere" EXACT [FMA:242197] synonym: "gray matter of lobe of cerebral hemisphere" RELATED [FMA:242197] synonym: "neocortical part of cerebral hemisphere" RELATED [] xref: FMA:242197 is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere [Term] id: UBERON:0016530 name: parietal cortex def: "Gray matter of the parietal region of the neocortex, located in the parietal lobe of gyrencephalic animals. It is continuous anteriorly with the frontal cortex, posteriorly with the occipital cortex and medially with the insular cortex and with the temporal cortex on the posterior/inferior border." [NLX:79282] subset: pheno_slim synonym: "cortex of parietal lobe" EXACT [FMA:242203] synonym: "gray matter of parietal lobe" RELATED [FMA:242203] synonym: "parietal lobe cortex" EXACT [FMA:242203] synonym: "parietal neocortex" EXACT [DHBA:10208] xref: DHBA:10208 xref: DMBA:16016 xref: EMAPA:35667 xref: FMA:242203 xref: MA:0000916 xref: MESH:D010296 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2473 xref: NLX:79282 xref: SCTID:369217001 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0016531 name: white matter of parietal lobe def: "A white matter of cerebral lobe that is part of a parietal lobe." [OBOL:automatic] xref: FMA:256184 xref: SCTID:369200008 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0016534 name: white matter of temporal lobe def: "A white matter of cerebral lobe that is part of a temporal lobe." [OBOL:automatic] xref: FMA:256186 xref: SCTID:362344007 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0016535 name: white matter of occipital lobe def: "A white matter of cerebral lobe that is part of a occipital lobe." [OBOL:automatic] xref: FMA:256188 xref: neuronames:832 xref: SCTID:362339000 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0016536 name: white matter of limbic lobe def: "A white matter of cerebral lobe that is part of a limbic lobe." [OBOL:automatic] xref: FMA:261091 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0016538 name: temporal cortex def: "Gray matter of the temporal region of the neocortex, located in the temporal lobe in gyrencephalic animals." [NLX:94939] synonym: "cortex of temporal lobe" EXACT [FMA:242201] synonym: "gray matter of temporal lobe" RELATED [FMA:242201] synonym: "temporal lobe cortex" EXACT [FMA:242201] synonym: "temporal neocortex" EXACT [DHBA:10235] xref: BM:Tel-Cx-Te xref: DHBA:10235 xref: DMBA:16044 xref: FMA:242201 xref: MA:0000941 xref: MESH:D013702 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLX:94939 xref: SCTID:362343001 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0016540 name: occipital cortex synonym: "cortex of occipital lobe" EXACT [FMA:242205] synonym: "gray matter of occipital lobe" RELATED [FMA:242205] synonym: "occipital lobe cortex" EXACT [FMA:242205] synonym: "occipital neocortex" EXACT [DHBA:10268] xref: DHBA:10268 xref: DMBA:16030 xref: EMAPA:35604 xref: FMA:242205 xref: MA:0000913 xref: PBA:4004 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0016542 name: limbic cortex synonym: "cortex of limbic lobe" EXACT [FMA:242234] synonym: "gray matter of limbic lobe" RELATED [FMA:242234] synonym: "limbic lobe cortex" EXACT [FMA:242234] xref: FMA:242234 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0016545 name: pharyngeal ectoderm alt_id: UBERON:2001379 def: "The external part of the developing pharynx that is made of ectoderm. During vertebrate development, pockets form in pharyngeal ectoderm between the pharyngeal arches." [http://orcid.org/0000-0002-6601-2165, PMID:23020903] xref: TAO:0001379 xref: ZFA:0001379 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: UBERON:0016547 name: lower foregut region endoderm xref: EHDAA2:0000566 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0003258 {source="EHDAA2"} ! endoderm of foregut relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithelium [Term] id: UBERON:0016548 name: central nervous system gray matter layer def: "A layer of of the central nervous system that is part of gray matter." [http://orcid.org/0000-0002-6601-2165] synonym: "CNS gray matter layer" EXACT [] synonym: "CNS grey matter layer" EXACT [] synonym: "gray matter layer of neuraxis" EXACT [FMA:83142] synonym: "grey matter layer" BROAD [] synonym: "grey matter layer of neuraxis" EXACT [] xref: FMA:83142 is_a: UBERON:0022303 ! nervous system cell part layer [Term] id: UBERON:0016549 name: central nervous system white matter layer def: "A layer of of the central nervous system that is composed of white matter." [http://orcid.org/0000-0002-6601-2165] synonym: "CNS white matter layer" EXACT [] synonym: "white matter layer" BROAD [] synonym: "white matter layer of neuraxis" EXACT [FMA:83898] xref: FMA:83898 is_a: UBERON:0022303 ! nervous system cell part layer [Term] id: UBERON:0016550 name: spinal cord column is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0016551 name: subdivision of spinal cord ventral column subset: non_informative is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0005375 ! spinal cord ventral column [Term] id: UBERON:0016552 name: phlegm def: "Mucus produced in the respiratory tract." [http://orcid.org/0000-0002-6601-2165] xref: NCIT:C93171 xref: UMLS:C0225378 is_a: UBERON:0000912 ! mucus [Term] id: UBERON:0016553 name: respiratory system mucus def: "Any mucus produced by a mucosae of the respiratory system. This includes the mucus produced in the nasal cavity (nasal mucus) and mucus produced in the respiratory tract (phlegm)." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Nasal_mucus#Respiratory_system] is_a: UBERON:0000912 ! mucus [Term] id: UBERON:0016554 name: white matter of midbrain def: "A white matter that is part of the midbrain." [OBOL:automatic] subset: human_reference_atlas synonym: "mesencephalic white matter" EXACT [HBA:MESWM] xref: DHBA:10650 xref: FMA:83936 xref: HBA:265505382 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001891 ! midbrain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016555 name: stria of telencephalon def: "A stria of neuraxis that is part of a telencephalon." [OBOL:automatic] synonym: "telencephalon stria" EXACT [FMA:67950] xref: FMA:67950 is_a: UBERON:0011299 ! white matter of telencephalon is_a: UBERON:0013199 ! stria of neuraxis [Term] id: UBERON:0016559 name: superficial cerebral vein def: "The superficial cerebral veins are a group of veins in the head. This group includes the superior cerebral veins." [Wikipedia:Superficial_cerebral_veins] synonym: "cortical cerebral vein" EXACT [FMA:50982] xref: FMA:50982 xref: Wikipedia:Superficial_cerebral_veins is_a: UBERON:0001663 {source="FMA"} ! cerebral vein is_a: UBERON:0035550 ! superficial vein [Term] id: UBERON:0016564 name: deep cerebral vein def: "The deep cerebral veins are a group of veins in the head. This group includes the superior thalamostriate vein." [Wikipedia:Deep_cerebral_veins] xref: FMA:50989 xref: Wikipedia:Deep_cerebral_veins is_a: UBERON:0001663 {source="FMA"} ! cerebral vein [Term] id: UBERON:0016565 name: cerebral blood vessel def: "A blood vessel that is part of a cerebellum." [OBOL:automatic] is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0016566 name: pit def: "An roughly circular indentation in a surface." [AEO:0000204, AEO:JB] subset: upper_level xref: AEO:0000204 is_a: UBERON:0036215 ! anatomical surface region [Term] id: UBERON:0016567 name: statoconial membrane def: "An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork." [http://orcid.org/0000-0002-6601-2165, PMID:2482728] comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/ synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948] synonym: "otolith membrane" NARROW [] xref: FMA:75570 is_a: UBERON:0005764 {source="FMA"} ! acellular membrane relationship: part_of UBERON:0001862 {source="MA-abduced"} ! vestibular labyrinth [Term] id: UBERON:0016568 name: gelatinous layer of statoconial membrane xref: FMA:75588 is_a: UBERON:0000476 {source="FMA"} ! acellular anatomical structure relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane [Term] id: UBERON:0016569 name: subcupular meshwork of statoconial membrane def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948] is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0016567 ! statoconial membrane [Term] id: UBERON:0016570 name: lamina of gray matter of spinal cord synonym: "rexed lamina" EXACT [FMA:68861] xref: FMA:68861 xref: http://neurolex.org/wiki/Category\:Rexed_spinal_cord_parcellation_scheme_region xref: Wikipedia:Rexed_laminae is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0016573 name: obsolete lamina II of gray matter of spinal cord is_obsolete: true replaced_by: UBERON:0002181 [Term] id: UBERON:0016574 name: lamina III of gray matter of spinal cord synonym: "lamina 3" RELATED [NeuroNames:1695] synonym: "lamina III" RELATED [NeuroNames:1695] synonym: "lamina spinale III" EXACT OMO:0003011 [FMA:68864, FMA:TA] synonym: "lamina spinalis III" RELATED OMO:0003011 [NeuroNames:1695] synonym: "rexed lamina III" EXACT [FMA:68864] synonym: "Rexed's lamina III" RELATED [NeuroNames:1695] synonym: "spinal lamina III" EXACT [FMA:68864] xref: FMA:68864 xref: neuronames:1695 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord [Term] id: UBERON:0016575 name: lamina IV of gray matter of spinal cord synonym: "lamina 4" RELATED [NeuroNames:1696] synonym: "lamina IV" RELATED [NeuroNames:1696] synonym: "lamina spinale IV" EXACT OMO:0003011 [FMA:68865, FMA:TA] synonym: "lamina spinalis IV" RELATED OMO:0003011 [NeuroNames:1696] synonym: "rexed lamina IV" EXACT [FMA:68865] synonym: "Rexed's lamina IV" RELATED [NeuroNames:1696] synonym: "spinal lamina IV" EXACT [FMA:68865] xref: FMA:68865 xref: neuronames:1696 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord [Term] id: UBERON:0016576 name: lamina V of gray matter of spinal cord def: "Spinal lamina V is a lamina of the spinal cord. It is also known as the neck of the posterior horn." [Wikipedia:Spinal_lamina_V] synonym: "lamina 5" RELATED [NeuroNames:1698] synonym: "lamina spinalis V" RELATED OMO:0003011 [NeuroNames:1698] synonym: "lamina V" RELATED [NeuroNames:1698] synonym: "neck of the dorsal horn" RELATED [NeuroNames:1698] synonym: "rexed lamina V" EXACT [FMA:68866] synonym: "Rexed's lamina V" RELATED [NeuroNames:1698] synonym: "spinal lamina V" EXACT [FMA:68866] xref: FMA:68866 xref: neuronames:1698 xref: Wikipedia:Spinal_lamina_V is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord [Term] id: UBERON:0016577 name: lamina VI of gray matter of spinal cord def: "Spinal lamina VI is a lamina of the spinal cord. It is also known as the base of the posterior horn." [Wikipedia:Spinal_lamina_VI] synonym: "basal nucleus of the dorsal horn" RELATED [NeuroNames:2007] synonym: "base of dorsal horn of spinal cord" RELATED [NeuroNames:2007] synonym: "base of posterior horn of spinal cord" RELATED [NeuroNames:2007] synonym: "base of the dorsal horn" RELATED [NeuroNames:1699] synonym: "base of the posterior horn" RELATED [NeuroNames:2007] synonym: "basis cornuis dorsalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus dorsalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus dorsalis medullae spinalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus posterioris" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus posterioris medullae spinalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "lamina 6" RELATED OMO:0003011 [NeuroNames:1699] synonym: "lamina spinalis VI" RELATED OMO:0003011 [NeuroNames:1699] synonym: "lamina VI" RELATED OMO:0003011 [NeuroNames:1699] synonym: "rexed lamina VI" EXACT [FMA:68867] synonym: "Rexed's lamina VI" RELATED [NeuroNames:1699] synonym: "spinal cord basal nucleus" RELATED [MA:0001120] synonym: "spinal lamina VI" EXACT [FMA:68867] xref: EMAPA:37632 {source="MA:th"} xref: FMA:68867 xref: MA:0001120 xref: neuronames:1699 xref: neuronames:2007 xref: Wikipedia:Spinal_lamina_VI is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord property_value: editor_note "consider splitting" xsd:string [Term] id: UBERON:0016578 name: lamina VII of gray matter of spinal cord synonym: "lamina 7" RELATED OMO:0003011 [NeuroNames:1700] synonym: "lamina spinalis VII" RELATED OMO:0003011 [NeuroNames:1700] synonym: "lamina VII" RELATED OMO:0003011 [NeuroNames:1700] synonym: "rexed lamina VII" EXACT [FMA:68868] synonym: "Rexed's lamina VII" RELATED [NeuroNames:1700] synonym: "spinal lamina VII" EXACT [FMA:68868] xref: FMA:68868 xref: neuronames:1700 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002257 {source="https://github.com/obophenotype/uberon/issues/1277"} ! ventral horn of spinal cord [Term] id: UBERON:0016579 name: lamina VIII of gray matter of spinal cord synonym: "lamina 8" RELATED OMO:0003011 [NeuroNames:1701] synonym: "lamina spinalis" RELATED OMO:0003011 [NeuroNames:1701] synonym: "lamina VIII" RELATED [NeuroNames:1701] synonym: "rexed lamina VIII" EXACT [FMA:68869] synonym: "Rexed's lamina VIII" RELATED [NeuroNames:1701] synonym: "spinal lamina VIII" EXACT [FMA:68869] xref: FMA:68869 xref: neuronames:1701 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0034771 {source="https://github.com/obophenotype/uberon/issues/1277"} ! ventral commissural nucleus of spinal cord [Term] id: UBERON:0016580 name: lamina IX of gray matter of spinal cord synonym: "rexed lamina IX" EXACT [FMA:68870] synonym: "spinal lamina IX" EXACT [FMA:68870] xref: FMA:68870 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord [Term] id: UBERON:0016593 name: obsolete rexed lamina xi comment: Rexed lamina system typically extends to X is_obsolete: true consider: FMA:68872 [Term] id: UBERON:0016594 name: obsolete rexed lamina xii comment: Rexed lamina system typically extends to X is_obsolete: true consider: FMA:68873 [Term] id: UBERON:0016610 name: nucleus proprius of spinal cord def: "The Nucleus proprius is a layer of the spinal cord adjacent to the substantia gelatinosa. Nucleus proprius constitutes the bulk of the dorsal horn and receives inputs from the dorsal root ganglions that carry sensory information, such as light touch, as well as pain and temperature information. Cells in this nucleus project to deeper laminae of the spinal cord, to the posterior column nuclei, and to other supraspinal relay centers including the midbrain, thalamus, and hypothalamus. Rexed laminae III, IV, and V make up the nucleus propius Nucleus proprius (NP), along with nucleus dorsalis (ND) are involved in sensing fine touch and proprioception." [Wikipedia:Nucleus_proprius_of_spinal_cord] synonym: "nucleus proprius" RELATED [NeuroNames:1633, Wikipedia:Nucleus_proprius_of_spinal_cord] synonym: "nucleus proprius columnae posterioris" RELATED OMO:0003011 [NeuroNames:1633] synonym: "nucleus proprius cornu dorsalis" RELATED OMO:0003011 [NeuroNames:1633] synonym: "nucleus proprius dorsalis" RELATED OMO:0003011 [NeuroNames:1633] synonym: "nucleus proprius medullae spinalis" EXACT OMO:0003011 [FMA:73906, FMA:TA] synonym: "nucleus proprius of the spinal cord" RELATED [NeuroNames:1633] synonym: "proper sensory nucleus" EXACT [FMA:73906] synonym: "proper sensory nucleus" RELATED [NeuroNames:1633] xref: FMA:73906 xref: neuronames:1633 xref: Wikipedia:Nucleus_proprius_of_spinal_cord is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0016611 name: auditory hillocks, pharyngeal arch 1 derived def: "A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 relationship: part_of UBERON:0006208 ! auditory hillocks [Term] id: UBERON:0016612 name: auditory hillocks, pharyngeal arch 2 derived def: "A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from UBERON:0003066 ! pharyngeal arch 2 relationship: part_of UBERON:0006208 ! auditory hillocks [Term] id: UBERON:0016618 name: baleen feeding system xref: Wikipedia:Aquatic_predation#Lunge_feeding is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001007 ! digestive system property_value: seeAlso "https://github.com/obophenotype/uberon/issues/479" xsd:anyURI [Term] id: UBERON:0016619 name: Y-shaped fibrocartilage skeleton of ventral pouch def: "A Y-shaped fibrocartilage structure that lies in the substance of the muscular ventral pouch of rorqual whales." [PMID:845966] synonym: "YSFS" EXACT OMO:0003000 [] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0016618 ! baleen feeding system [Term] id: UBERON:0016620 name: ventral throat pleat synonym: "ventral groove blubber" RELATED [] synonym: "VGB" RELATED OMO:0003000 [] is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0016618 ! baleen feeding system [Term] id: UBERON:0016621 name: lunge feeding organ def: "A fibrous capsule located between the jaws of rorqual whales that contains a gelatinous substance and papillae bearing mechanorecaptors." [PMID:22622577] is_a: UBERON:0000020 ! sense organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0006606 ! mandibular symphysis relationship: part_of UBERON:0016618 ! baleen feeding system [Term] id: UBERON:0016622 name: lunge feeding organ papilla def: "Missing definition for term UBERON:0016622. Please replace it using linked reference." [PMID:22622577] is_a: UBERON:2001995 ! papilla relationship: part_of UBERON:0016621 ! lunge feeding organ [Term] id: UBERON:0016624 name: lunge feeding vibrissa def: "A vibrissa on the lower jaw of rorqual whales that is hypothesized to form part of the lung feeding system." [PMID:22622577] is_a: UBERON:0011933 ! vibrissa unit relationship: part_of UBERON:0001710 ! lower jaw region relationship: part_of UBERON:0016618 ! baleen feeding system [Term] id: UBERON:0016628 name: stem of Y-shaped fibrocartilage skeleton of ventral pouch synonym: "YSF stem" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch [Term] id: UBERON:0016629 name: branch of Y-shaped fibrocartilage skeleton of ventral pouch synonym: "YSF branch" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch [Term] id: UBERON:0016630 name: neurovascular bundle def: "A body structure consisting of nerves traveling together with arteries, veins, and/or lymphatics." [ncithesaurus:Neurovascular_Bundle] xref: FMA:32419 xref: NCIT:C74603 xref: UMLS:C0824497 is_a: UBERON:0034921 ! multi organ part structure [Term] id: UBERON:0016631 name: actinopterygian frontal-parietal joint def: "Fibrous joint connecting the actinopterygian frontal bone to the actinopterygian parietal bone." [ZFA:0005608, ZFIN:ZDB-PUB-060323-12] synonym: "coronal suture" RELATED [ZFA:0005608] synonym: "frontal-parietal joint" RELATED SENSU [ZFA:0005608] xref: TAO:0005255 xref: ZFA:0005608 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0016632 name: isthmus of fallopian tube subset: human_reference_atlas synonym: "isthmus of oviduct" RELATED [FMA:18306] synonym: "isthmus of uterine tube" RELATED [FMA:18306] synonym: "isthmus tubae uterinae" EXACT OMO:0003011 [FMA:18306, FMA:TA] synonym: "uterine tube isthmus" RELATED [FMA:18306] xref: FMA:18306 is_a: UBERON:0013515 {source="FMA"} ! subdivision of oviduct relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0016633 name: parvocellular reticular nucleus def: "The parvocellular reticular nucleus is part of the brain located dorsolateral to the nucleus reticularis pontis caudalis. The dorsal portion of the reticular nucleus has been shown to innervate the mesencephalic trigeminal nucleus and its surrounding area. Also, it projects to the facial nucleus, hypoglossal nucleus and parabrachial nucleus along with parts of the caudal parvocellular reticular formation. This nucleus is also involved in expiration with a part of the gigantocellular nucleus." [Wikipedia:Parvocellular_reticular_nucleus] synonym: "nucleus parvocellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "nucleus reticularis parvicellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "nucleus reticularis parvocellaris" RELATED [Wikipedia:Parvocellular_reticular_nucleus] synonym: "nucleus reticularis parvocellularis" EXACT [FMA:TA] synonym: "nucleus reticularis parvocellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "parvicellular reticular nucleus" EXACT [FMA:72575] synonym: "parvicellular reticular nucleus" RELATED [NeuroNames:728] synonym: "parvocellular nucleus" RELATED [Wikipedia:Parvocellular_reticular_nucleus] synonym: "parvocellular reticular nucleus" EXACT [FMA:72575] synonym: "parvocellular reticular nucleus" RELATED [NeuroNames:728] xref: DHBA:12618 xref: FMA:72575 xref: HBA:9624 xref: MBA:852 xref: neuronames:728 xref: Wikipedia:Parvocellular_reticular_nucleus is_a: UBERON:0002154 ! lateral reticular nucleus [Term] id: UBERON:0016634 name: premotor cortex def: "The premotor cortex is an area of motor cortex lying within the frontal lobe of the brain. It extends 3 mm anterior to the primary motor cortex, near the Sylvian fissure, before narrowing to approximately 1 mm near the medial longitudinal fissure, which serves as the posterior border for the prefrontal cortex. The premotor cortex is largely equivalent to Brodmann area 6. Activity within this region is critical to the sensory guidance of movement and control of proximal and trunk muscles of the body." [Wikipedia:Premotor_cortex] synonym: "intermediate precentral cortex" RELATED [NeuroNames:2331] synonym: "nonprimary motor cortex" RELATED [NeuroNames:2331] synonym: "premotor" RELATED [Wikipedia:Premotor_cortex] synonym: "premotor area" RELATED [NeuroNames:2331] synonym: "premotor cortex" RELATED [NeuroNames:2331] synonym: "premotor cortex (area 6)" EXACT [DHBA:10168] synonym: "premotor region" RELATED [Wikipedia:Premotor_cortex] synonym: "promotor cortex" RELATED [NeuroNames:2331] synonym: "secondary motor areas" RELATED [NeuroNames:2331] synonym: "secondary motor cortex" RELATED [NeuroNames:2331] synonym: "secondary somatomotor areas" RELATED [NeuroNames:2331] xref: DHBA:10168 xref: FMA:224852 xref: MBA:993 xref: neuronames:2331 xref: SCTID:90928005 xref: Wikipedia:Premotor_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0016635 name: paragigantocellular nucleus xref: DHBA:12626 xref: MBA:938 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata [Term] id: UBERON:0016636 name: supplemental motor cortex def: "The supplementary motor area (SMA) is a part of the sensorimotor cerebral cortex (perirolandic, i.e. on each side of the Rolando or central sulcus). It was included, on purely cytoarchitectonic arguments, in area 6 of Brodmann and the Vogts. It is located on the medial face of the hemisphere, just in front of primary motor cortex. This is an element that appeared late in evolution, in monkeys, linked to the appearance of a true medial pallidum." [Wikipedia:Supplementary_motor_area] subset: pheno_slim synonym: "area F3" RELATED [NeuroNames:3176] synonym: "jPL (SMC)" BROAD OMO:0003000 [FMA:224858, FMA:CMA] synonym: "juxtapositional lobule cortex" RELATED [FMA:224858] synonym: "SMA proper" RELATED [NeuroNames:3176] synonym: "supplementary motor area" RELATED [NeuroNames:3176, Wikipedia:Supplementary_motor_area] synonym: "supplementary motor area (M II)" RELATED [NeuroNames:3176] synonym: "supplementary motor cortex" RELATED [NeuroNames:3176] xref: FMA:224858 xref: neuronames:3176 xref: Wikipedia:Supplementary_motor_area is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0016637 name: lateral periolivary nucleus def: "Lateral component of the periolivary nucleus." [http://medical-dictionary.thefreedictionary.com/periolivary+nuclei] xref: DHBA:12465 xref: FMA:226217 is_a: UBERON:0002971 {source="cjm"} ! periolivary nucleus [Term] id: UBERON:0016641 name: subparafascicular nucleus def: "The term subparafascicular nucleus refers to a cell group located ventral to the parafascicular nucleus in the thalamus. Identified by internal structure, it is present in the human ( Mai-1997 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-1998 ), and the mouse ( Hof-2000 )." [NeuroNames:2253] synonym: "nucleus subparafascicularis thalami" RELATED OMO:0003011 [NeuroNames:2253] synonym: "subparafascicular nucleus" RELATED [NeuroNames:2253] synonym: "subparafascicular nucleus of the thalamus" RELATED [NeuroNames:2253] synonym: "subparafascicular nucleus thalamus" RELATED [NeuroNames:2253] synonym: "subparafascicular thalamic nucleus" RELATED [NeuroNames:2253] xref: DHBA:13054 xref: FMA:226239 xref: MBA:406 xref: neuronames:2253 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0010225 ! thalamic complex [Term] id: UBERON:0016824 name: lateral paragigantocellular nucleus synonym: "lateral paragigantocellular nucleus" RELATED [NeuroNames:731] synonym: "lateral paragigantocellular reticular nucleus" EXACT [FMA:72577] synonym: "nucleus paragigantocellularis lateralis" RELATED OMO:0003011 [NeuroNames:731] synonym: "paragigantocellular nucleus, lateral part" EXACT [FMA:72577] synonym: "paragigantocellular nucleus, lateral part" RELATED [NeuroNames:731] synonym: "paragigantocellular reticular nucleus, lateral part" RELATED [NeuroNames:731] xref: DHBA:12629 xref: FMA:72577 xref: HBA:9601 xref: MBA:978 xref: neuronames:731 xref: NLX:143582 is_a: UBERON:0016635 ! paragigantocellular nucleus [Term] id: UBERON:0016825 name: dorsal paragigantocellular nucleus synonym: "dorsal paragigantocellular nucleus" RELATED [NeuroNames:732] synonym: "dorsal paragigantocellular reticular nucleus" EXACT [FMA:72578] synonym: "nucleus paragigantocellularis dorsalis" RELATED OMO:0003011 [NeuroNames:732] synonym: "paragigantocellular nucleus, dorsal part" EXACT [FMA:72578] synonym: "paragigantocellular nucleus, dorsal part" RELATED [NeuroNames:732] synonym: "paragigantocellular reticular nucleus, dorsal part" RELATED [NeuroNames:732] synonym: "posterior paragigantocellular reticular nucleus" EXACT [FMA:72578] xref: DHBA:12628 xref: FMA:72578 xref: HBA:9600 xref: MBA:970 xref: neuronames:732 is_a: UBERON:0016635 ! paragigantocellular nucleus [Term] id: UBERON:0016826 name: paramedian medullary reticular complex synonym: "nuclei paramedianes myelencephali" RELATED OMO:0003011 [NeuroNames:734] synonym: "paramedial reticular nuclei" RELATED [NeuroNames:734] synonym: "paramedian group (medullary reticular formation)" EXACT [FMA:72580] synonym: "paramedian group (medullary reticular formation)" RELATED [NeuroNames:734] synonym: "paramedian medullary reticular group" EXACT [FMA:72580] synonym: "paramedian medullary reticular group" RELATED [NeuroNames:734] xref: FMA:72580 xref: neuronames:734 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation [Term] id: UBERON:0016827 name: dorsal paramedian reticular nucleus def: "Small nucleus in the brainstem of human, located adjacent and medial to the nucleus prepositus in the dorsal medulla, described in several atlases of human brain stem. In transverse sections, it is oval with its long axis aligned with the dorsal border of the brainstem. It begins at about the same A-P level as the nucleus prepositus, just rostral to the hypoglossal nucleus. It includes calretinin immunoreactive large cells with oval or polygonal cell bodies. Cells are not immunoreactive for either calbindin or parvalbumin, but a few fibers immunoreactive to each protein are found within its central region. Cells in PMD are also immunoreactive to nNOS, and immunoreactivity to a neurofilament protein shows many labeled cells and fibers. According to Baizer et al., no equivalent structure was observed in the cat, rat, mouse or monkey atlas although they did not look at the brains of the great apes." [NLX:143549] synonym: "dorsal paramedian nuclei of raphe" EXACT [FMA:72581] synonym: "dorsal paramedian nucleus" EXACT [FMA:72581] synonym: "dorsal paramedian reticular nucleus" RELATED [NeuroNames:735] synonym: "nucleus paramedianus dorsalis" RELATED OMO:0003011 [NeuroNames:735] synonym: "nucleus paramedianus posterior" RELATED OMO:0003011 [NeuroNames:735] synonym: "nucleus reticularis paramedianus myelencephali" RELATED OMO:0003011 [NeuroNames:735] synonym: "posterior paramedian nucleus" EXACT [FMA:72581] xref: DHBA:12597 xref: FMA:72581 xref: neuronames:735 xref: NLX:143549 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata relationship: part_of UBERON:0016826 ! paramedian medullary reticular complex [Term] id: UBERON:0016832 name: paratrigeminal nucleus def: "The term paratrigeminal nucleus refers to a group of cells located lateral to the spinal trigeminal tract of the medulla and medial to the spinocerebellar tracts at the level of the spinal trigeminal nucleus. The cells, identified by Nissl stain, are partially embedded in the adjacent tracts; their distribution varies by species. The paratrigeminal nucleus may represent an extension of the lateral cervical nucleus into the medulla ( Swanson-2004 ). It is found in the human ( Carpenter-1983 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). In the functional model of central nervous system organization it is classified as part of the subcortical somatosensory system ( Swanson-2004 )." [NeuroNames:761] synonym: "lateral cervical nucleus, trigeminal extension" RELATED [NeuroNames:761] synonym: "nucleus paratrigeminalis" RELATED OMO:0003011 [NeuroNames:761] synonym: "paratrigeminal nucleus" RELATED [NeuroNames:761] xref: BAMS:PAT xref: DHBA:12656 xref: FMA:72599 xref: HBA:9630 xref: neuronames:761 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata [Term] id: UBERON:0016843 name: lateral nucleus of trapezoid body def: "One of two potential parts of the trapezoid nucleus. Separated by an indistinct boundary, the other is the medial trapezoid nucleus ( Crosby-1962 ). The existence of the trapezoid nucleus in the human is disputed ( Bazwinsky-2003 )." [NeuroNames:2852] synonym: "lateral nucleus of the trapezoid body" RELATED [NeuroNames:2852] synonym: "lateral trapezoid nucleus" RELATED [NeuroNames:2852] synonym: "LNTB" EXACT OMO:0003000 [] xref: DHBA:12459 xref: DMBA:17274 xref: FMA:75730 xref: neuronames:2852 is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0002932 {notes="to be verified"} ! trapezoid body [Term] id: UBERON:0016848 name: retroambiguus nucleus def: "The term retroambiguus nucleus refers to a group of neurons in the medulla at the caudal end of the nucleus ambiguus, from which the cranial part of the accessory nerve originates ( Crosby-1962 )." [NeuroNames:2319] synonym: "nucleus retroambigualis" RELATED OMO:0003011 [NeuroNames:2319] synonym: "nucleus retroambiguus" EXACT OMO:0003011 [FMA:77096, FMA:TA] synonym: "retroambiguus nucleus" RELATED [NeuroNames:2319] xref: FMA:77096 xref: HBA:9650 xref: neuronames:2319 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata [Term] id: UBERON:0016849 name: obsolete subparabrachial nucleus def: "A cell group located ventral to the brachium conjunctivum in the general area where the medial and lateral parabrachial nuclei abut, shifting to the slightly more lateral position rostrally." [http://www.medilexicon.com/medicaldictionary.php?t=61742] is_obsolete: true replaced_by: UBERON:0002869 [Term] id: UBERON:0016850 name: nucleus of phrenic nerve def: "Neuron cell bodies located in the more medial portions of the anterior horn at cervical levels C3-C7 that innervate the diaphragm via the phrenic nerve." [http://medical-dictionary.thefreedictionary.com/nucleus+of+phrenic+nerve] synonym: "nucleus nervi phrenici" RELATED OMO:0003011 [NeuroNames:2004] synonym: "nucleus of phrenic nerve" RELATED [NeuroNames:2004] synonym: "nucleus of the phrenic nerve" RELATED [NeuroNames:2004] synonym: "nucleus phrenicus columnae anterioris medullae spinalis" RELATED OMO:0003011 [NeuroNames:2004] synonym: "phrenic neural nucleus" EXACT [FMA:77458] synonym: "phrenic nucleus" EXACT [FMA:77458] synonym: "phrenic nucleus of anterior column of spinal cord" RELATED [NeuroNames:2004] xref: FMA:77458 xref: neuronames:2004 is_a: UBERON:0011777 {source="FMA"} ! nucleus of spinal cord [Term] id: UBERON:0016851 name: renal fascia def: "A fascial pouch derived from extraperitoneal connective tissue that contains the kidneys, the suprarenal glands, the renal vessels and perirenal fat." [http://anatomy.uams.edu/anatomyhtml/kidney.html] synonym: "fascia of Zuckerkandl" EXACT [FMA:18104] synonym: "fascia renalis" RELATED [Wikipedia:Renal_fascia] synonym: "Gerota capsule" RELATED [Wikipedia:Renal_fascia] synonym: "gerota's capsule" EXACT [FMA:18104] synonym: "gerota's fascia" EXACT [FMA:18104] xref: FMA:18104 xref: Wikipedia:Renal_fascia is_a: UBERON:0013493 ! abdominal fascia [Term] id: UBERON:0016852 name: skin scent gland def: "A scent gland that is part of the skin." [http://orcid.org/0000-0002-6601-2165] synonym: "cutaneous scent gland" EXACT [] xref: SCTID:67740006 is_a: UBERON:0002419 ! skin gland is_a: UBERON:0011252 ! scent gland is_a: UBERON:0019319 ! exocrine gland of integumental system [Term] id: UBERON:0016853 name: interdigital gland def: "A skin gland found in the interdigital region of some mammals." [http://orcid.org/0000-0002-6601-2165] synonym: "interdigital sinus" EXACT [PMID:20512761] xref: SCTID:441008 is_a: UBERON:0016852 ! skin scent gland relationship: part_of UBERON:0012140 ! digitopodium region [Term] id: UBERON:0016854 name: dorsal part of optic cup def: "The dorsal region of the optic cup that gives rise to the dorsal part of the retina." [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0003072 ! optic cup [Term] id: UBERON:0016855 name: ventral part of optic cup def: "The ventral region of the optic cup that gives rise to the ventral part of the retina." [http://orcid.org/0000-0002-6601-2165] comment: optic fissure, hyaloid artery, pecten synonym: "ventral optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventral region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0003072 ! optic cup [Term] id: UBERON:0016856 name: digit 6 def: "A digit that is part of a digit 6 plus metapodial segment." [OBOL:automatic] synonym: "autopod digit 6" EXACT [] synonym: "digit VI" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "limb digit 6" EXACT [] synonym: "sixth digit" EXACT [] is_a: UBERON:0002544 ! digit relationship: part_of UBERON:0016866 ! digit 6 plus metapodial segment property_value: ray_number "6" xsd:nonNegativeInteger [Term] id: UBERON:0016857 name: digit 7 def: "A digit that is part of a digit 7 plus metapodial segment." [OBOL:automatic] synonym: "autopod digit 7" EXACT [] synonym: "digit VII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "limb digit 7" EXACT [] synonym: "seventh digit" EXACT [] is_a: UBERON:0002544 ! digit relationship: part_of UBERON:0016867 ! digit 7 plus metapodial segment property_value: ray_number "7" xsd:nonNegativeInteger [Term] id: UBERON:0016858 name: digit 8 def: "A digit that is part of a digit 8 plus metapodial segment." [OBOL:automatic] synonym: "autopod digit 8" EXACT [] synonym: "digit VIII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "eighth digit" EXACT [] synonym: "limb digit 8" EXACT [] is_a: UBERON:0002544 ! digit relationship: part_of UBERON:0016868 ! digit 8 plus metapodial segment property_value: ray_number "8" xsd:nonNegativeInteger [Term] id: UBERON:0016866 name: digit 6 plus metapodial segment def: "A subdivision of the autopod consisting of digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit VI plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:0016867 name: digit 7 plus metapodial segment def: "A subdivision of the autopod consisting of digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit VII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:0016868 name: digit 8 plus metapodial segment def: "A subdivision of the autopod consisting of digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit VIII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:0016876 name: digit 6 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:0016866 ! digit 6 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:0016877 name: digit 7 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:0016867 ! digit 7 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:0016878 name: digit 8 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:0016868 ! digit 8 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:0016879 name: future central nervous system alt_id: UBERON:3000469 def: "Primordium that develops into the central nervous system." [http://orcid.org/0000-0002-6601-2165] synonym: "future CNS" EXACT [] synonym: "presumptive central nervous system" EXACT [] is_a: UBERON:0006598 ! presumptive structure relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0016880 ! future nervous system [Term] id: UBERON:0016880 name: future nervous system alt_id: UBERON:3000477 def: "Primordium that develops into the nervous system." [http://orcid.org/0000-0002-6601-2165] synonym: "presumptive nervous system" EXACT [AAO:0000477] xref: AAO:0000477 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0016881 name: craniopharyngeal canal def: "The craniopharyngeal canal, is an anatomical feature sometimes found in the sphenoid bone opening to the sella turcica. It is a canal (a passage or channel) sometimes found extending from the anterior part of the fossa hypophyseos of the sphenoid bone to the under surface of the skull, and marks the original position of Rathke's pouch; while at the junction of the septum of the nose with the palate traces of the stomodeal end are occasionally present." [Wikipedia:Craniopharyngeal_canal] synonym: "bucconeural duct" RELATED [] synonym: "craniopharyngeal duct" RELATED [Wikipedia:Craniopharyngeal_canal] xref: CALOHA:TS-2347 xref: EMAPA:19194 xref: NCIT:C12357 xref: SCTID:264453001 xref: UMLS:C0229549 xref: Wikipedia:Craniopharyngeal_canal is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0016882 name: intertarsal-type crurotarsal joint def: "An ankle joint that passes between the astragalus and calcaneum." [http://palaeos.com/vertebrates/glossary/glossaryCr.html#Crurotarsal%20joint] synonym: "crurotarsal joint" RELATED [ISBN:0073040584] synonym: "intertarsal joint" RELATED [ISBN:0073040584] is_a: UBERON:0001488 {source="UBERON"} ! ankle joint property_value: taxon_notes "The ankle joint of pseudosuchians (including crocodilians) and phytosaurs, passing between the astragalus and calcaneum, is also called crurotarsal joint in the literature.[5][6] In the skeletons of the phytosaurs and most of the pseudosuchians this joint bends around a peg on the astragalus which fits into a socket in the calcaneum (the 'crocodile normal' tarsus); only in the skeletons of the ornithosuchid pseudosuchians a peg on the calcaneum fits into a socket in the astragalus (the 'crocodile reversed' tarsus).[3] Strictly speaking this ankle isn't a crurotarsal joint in the previously discussed sense, as it's situated between the two proximal tarsal bones. However, while calcaneum isn't fixed to the fibula, the astragalus is fixed to the tibia by a suture and thus in practice it functions as an extension of the crus.[7]" xsd:string [Term] id: UBERON:0016883 name: ovarian fossa def: "A shallow depression on the lateral wall of the pelvis, wherein the ovary lies. This fossa has the following boundaries: superiorly: by the external iliac vessels anteriorly and inferiorly: by the broad ligament of the uterus posteriorly: by the ureter and internal iliac vessels." [MGI:anna, Wikipedia:Ovarian_fossa] subset: pheno_slim synonym: "Claudius fossa" EXACT [MGI:anna] synonym: "fossa ovarica" EXACT OMO:0003011 [Wikipedia:Ovarian_fossa] xref: FMA:21030 xref: Wikipedia:Ovarian_fossa is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002355 ! pelvic region of trunk relationship: part_of UBERON:0005449 ! greater sac [Term] id: UBERON:0016884 name: shoulder joint def: "The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints." [http://www.innerbody.com/image/skel17.html] synonym: "joint of shoulder region" EXACT [] xref: MESH:D012785 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:361835002 is_a: UBERON:0000982 ! skeletal joint relationship: develops_from UBERON:0006292 {evidence="definitional"} ! shoulder joint primordium relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0016885 name: epithelium of terminal part of digestive tract def: "Epithelium lining the distalmost portion of the digestive tract." [http://orcid.org/0000-0002-6601-2165] synonym: "rectum epithelium" NARROW [BTO:0005445] xref: BTO:0005445 xref: WBbt:0005800 is_a: UBERON:0003929 ! digestive tract epithelium relationship: part_of UBERON:0006866 ! terminal part of digestive tract [Term] id: UBERON:0016886 name: muscle tissue of terminal part of digestive tract def: "Any muscle tissue of the distalmost portion of the digestive tract." [http://orcid.org/0000-0002-6601-2165] synonym: "rectum muscle" NARROW [] synonym: "rectum muscle structure" NARROW [] is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0006866 ! terminal part of digestive tract [Term] id: UBERON:0016887 name: entire extraembryonic component def: "The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism." [AEO:0000195, AEO:JB] synonym: "extra-embryonic component" EXACT [] synonym: "extraembryonic component" EXACT [AEO:0000195] xref: AEO:0000195 xref: EHDAA2:0000003 xref: EMAPA:16042 is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure relationship: part_of UBERON:0004716 {source="AEO"} ! conceptus [Term] id: UBERON:0016888 name: transitional anatomical structure def: "An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development." [AEO:0000132, AEO:JB] xref: AEO:0000132 is_a: UBERON:0005423 {source="AEO"} ! developing anatomical structure [Term] id: UBERON:0016890 name: intrahepatic branch of portal vein synonym: "intrahepatic part of portal vein" EXACT [FMA:15417] xref: FMA:15417 xref: SCTID:304373004 is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0015796 ! liver blood vessel [Term] id: UBERON:0016896 name: periosteum of long bone def: "A periosteum that is part of a long bone." [OBOL:automatic] synonym: "long bone periosteum" EXACT [FMA:32677] xref: FMA:32677 is_a: UBERON:0002515 ! periosteum relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:0016910 name: frenulum of lip synonym: "frenulum labii" EXACT [] synonym: "labial frenulum" EXACT [] synonym: "lip frenulum" EXACT [FMA:59820] synonym: "medial labial frenulum" RELATED [FMA:59820] xref: FMA:59820 xref: SCTID:264053009 is_a: UBERON:0036293 ! oral frenulum is_a: UBERON:0036294 ! mucosa of lip [Term] id: UBERON:0016912 name: frenulum of upper lip def: "A frenulum of lip that is part of a upper lip." [OBOL:automatic] synonym: "f. labii superioris" EXACT OMO:0003011 [] synonym: "frenulum labii superioris" EXACT OMO:0003011 [] synonym: "upper lip frenulum" EXACT [FMA:59821] xref: FMA:59821 xref: SCTID:264488001 is_a: UBERON:0005031 ! mucosa of upper lip is_a: UBERON:0016910 ! frenulum of lip relationship: part_of UBERON:0005031 {source="FMA"} ! mucosa of upper lip [Term] id: UBERON:0016913 name: frenulum of lower lip def: "A frenulum of lip that is part of a lower lip." [OBOL:automatic] synonym: "f. labii inferioris" RELATED OMO:0003011 [Wikipedia:Frenulum_of_lower_lip] synonym: "frenulum labii inferioris" EXACT [] synonym: "frenulum labii inferioris" RELATED OMO:0003011 [Wikipedia:Frenulum_of_lower_lip] synonym: "lower lip frenulum" EXACT [FMA:59822] xref: FMA:59822 xref: SCTID:277191003 xref: Wikipedia:Frenulum_of_lower_lip is_a: UBERON:0005032 ! mucosa of lower lip is_a: UBERON:0016910 ! frenulum of lip relationship: part_of UBERON:0005032 {source="FMA"} ! mucosa of lower lip [Term] id: UBERON:0016914 name: lamina lucida synonym: "electron-lucent layer of basal lamina of connective tissue" EXACT [FMA:62921] synonym: "lamina rara" EXACT [FMA:62921] xref: FMA:62921 xref: NCIT:C32917 xref: UMLS:C1167355 is_a: UBERON:0005764 {source="FMA"} ! acellular membrane relationship: part_of UBERON:0000482 {source="FMA"} ! basal lamina of epithelium [Term] id: UBERON:0016915 name: vermilion def: "The zone of the skin that surrounds a lip and is colored red due to thin epithelium and presence of eleidin." [http://orcid.org/0000-0002-6601-2165] synonym: "vermilion border" BROAD [] synonym: "vermilion border of lip" EXACT [] synonym: "vermilion of lip" EXACT [] synonym: "vermillion" RELATED OMO:0003002 [] xref: FMA:59824 xref: SCTID:362086008 is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0016918 name: upper vermilion def: "A vermilion that is part of a upper lip." [OBOL:automatic] synonym: "vermilion border of upper lip" EXACT [] synonym: "vermilion of upper lip" EXACT [FMA:59827] xref: FMA:59827 xref: SCTID:245799004 is_a: UBERON:0016915 ! vermilion is_a: UBERON:0018151 ! skin of upper lip [Term] id: UBERON:0016919 name: lower vermilion def: "A vermilion that is part of a lower lip." [OBOL:automatic] synonym: "vermilion border of lower lip" EXACT [] synonym: "vermilion of lower lip" EXACT [FMA:59828] xref: FMA:59828 xref: SCTID:245800000 is_a: UBERON:0016915 ! vermilion is_a: UBERON:0018150 ! skin of lower lip [Term] id: UBERON:0016920 name: descending trunk of arch of aorta synonym: "descending aortic arch" EXACT [HP:0012305] synonym: "descending limb of arch of aorta" EXACT [FMA:13082] synonym: "descending trunk of aortic arch" EXACT [FMA:13082] xref: FMA:13082 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001508 {source="FMA"} ! arch of aorta [Term] id: UBERON:0016923 name: preductal region of aortic arch def: "Area of aorta proximal to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] synonym: "preligamental region of aortic arch" EXACT [FMA:3774] xref: FMA:3774 xref: SCTID:197773005 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta [Term] id: UBERON:0016924 name: postductal region of aortic arch def: "Area of aorta distal to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] synonym: "postligamental region of aortic arch" EXACT [FMA:3776] xref: FMA:3776 xref: SCTID:197852003 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta [Term] id: UBERON:0016925 name: juxtaductal region of aortic arch def: "Area of aorta at the area of insertion to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] synonym: "aortic isthmus" RELATED [] synonym: "isthmus aorta" EXACT [FMA:3771] synonym: "juxtaligamental region of aortic arch" EXACT [FMA:3778] xref: FMA:3771 xref: FMA:3778 xref: SCTID:197677000 xref: SCTID:197932000 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta [Term] id: UBERON:0016926 name: mucus body coating def: "A coating of mucus that is produced by the skin and covers all or most of the body of an animal." [http://orcid.org/0000-0002-6601-2165] synonym: "mucous body coating" RELATED [] xref: BTO:0005082 is_a: UBERON:0010152 ! skin mucus property_value: function_notes "The epidermal mucus of fish regulates swimming speed by controlling the hydrodynamic resistance of the skin surface. The mucus is also presumed to serve as a defence against pathogenic organisms and is intimately associated with osmoregulation." xsd:string {source="BTO:0005082"} [Term] id: UBERON:0016927 name: mucus cocoon def: "A mucous covering produced nocturnally by some fish that is used to envelope the whole animal." [PMID:21084337] synonym: "mucous cocoon" RELATED [] is_a: UBERON:0000912 ! mucus [Term] id: UBERON:0016928 name: metaphysis of fibula def: "A metaphysis that is part of a fibula." [UBERON:nv] synonym: "fibula metaphysis" EXACT [FMA:33745] synonym: "fibular metaphysis" EXACT [] xref: FMA:33745 is_a: UBERON:0001438 ! metaphysis relationship: part_of UBERON:0001446 ! fibula [Term] id: UBERON:0016929 name: lingual cusp of tooth def: "A medially (towards the tongue)) raised feature found on crown of a tooth." [PHENOSCAPE:alex] synonym: "cuspis lingualis" EXACT OMO:0003011 [FMA:TA] synonym: "lingual cusp" EXACT [FMA:56490] xref: FMA:56490 xref: SCTID:245720006 is_a: UBERON:0006844 {source="FMA"} ! cusp of tooth [Term] id: UBERON:0016930 name: ridge of tooth def: "A linear flat evelation on a tooth." [Wikipedia:Dental_anatomy#Ridges] synonym: "crista of tooth" EXACT [] synonym: "tooth ridge" EXACT [] xref: SCTID:245699009 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0016931 name: transverse ridge of tooth def: "Triangular ridges facing each other and crossing at transverse angle, forming a transverse ridge on posterior teeth." [PHENOSCAPE:curators] synonym: "crista transversalis (corona dentis)" EXACT [FMA:56658] synonym: "crista transversalis dentis" EXACT OMO:0003011 [FMA:56658, FMA:TA] synonym: "crista transversalis of tooth" EXACT [FMA:56658] synonym: "transverse ridge of crown of tooth" EXACT [FMA:56658] xref: FMA:56658 is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016932 name: triangular ridge of tooth synonym: "crista triangularis (corona dentis)" EXACT [FMA:56659] synonym: "crista triangularis dentis" EXACT OMO:0003011 [FMA:56659, FMA:TA] synonym: "crista triangularis of tooth" EXACT [FMA:56659] synonym: "triangular ridge of crown of tooth" EXACT [FMA:56659] xref: FMA:56659 is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016933 name: oblique ridge of tooth synonym: "crista obliqua (corona dentis)" EXACT [FMA:56660] synonym: "crista obliqua dentis" EXACT OMO:0003011 [FMA:56660, FMA:TA] synonym: "oblique ridge of crown of tooth" EXACT [FMA:56660] xref: FMA:56660 xref: SCTID:245701009 is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016934 name: marginal ridge of tooth synonym: "crista marginalis (dentis)" EXACT [FMA:56758] synonym: "crista marginalis dentis" EXACT OMO:0003011 [FMA:56758, FMA:TA] synonym: "crista marginalis of tooth" EXACT [FMA:56758] xref: FMA:56758 xref: SCTID:245700005 is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016937 name: transverse marginal ridge of tooth synonym: "transverse marginal ridge of tooth" EXACT [] xref: SCTID:245702002 is_a: UBERON:0016934 ! marginal ridge of tooth [Term] id: UBERON:0016938 name: mesial marginal ridge of tooth synonym: "mesial marginal ridge of tooth" EXACT [] xref: SCTID:278475009 is_a: UBERON:0016934 ! marginal ridge of tooth [Term] id: UBERON:0016939 name: distal marginal ridge of tooth synonym: "distal marginal ridge of tooth" EXACT [] xref: SCTID:278476005 is_a: UBERON:0016934 ! marginal ridge of tooth [Term] id: UBERON:0016942 name: rostral margin of orbit is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001697 ! orbit of skull [Term] id: UBERON:0016943 name: lower premolar tooth alt_id: UBERON:4200143 synonym: "lower premolar tooth" EXACT [] synonym: "LP" BROAD OMO:0003000 [] synonym: "mandibular premolar tooth" EXACT [] is_a: UBERON:0003268 ! tooth of lower jaw is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0016944 name: upper premolar tooth alt_id: UBERON:4200144 synonym: "maxillary premolar tooth" EXACT [] synonym: "UP" BROAD OMO:0003000 [] synonym: "upper premolar tooth" EXACT [] is_a: UBERON:0003267 ! tooth of upper jaw is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0017098 name: retractor lateralis posterior muscle synonym: "M. retractor lateralis posterior" EXACT [] synonym: "posterior retractor lateralis" EXACT [] is_a: UBERON:0017196 ! retractor lateralis muscle [Term] id: UBERON:0017099 name: retractor lateralis anterior muscle synonym: "anterior retractor lateralis" EXACT [] synonym: "M. retractor lateralis anterior" EXACT [] is_a: UBERON:0017196 ! retractor lateralis muscle [Term] id: UBERON:0017102 name: flexor cruris lateralis pars accessoria muscle synonym: "M. flexor cruris lateralis pars accessoria" EXACT [] synonym: "pars accessoria of M. flexor cruris lateralis" EXACT [] is_a: UBERON:0017156 ! flexor cruris lateralis muscle [Term] id: UBERON:0017156 name: flexor cruris lateralis muscle synonym: "M. flexor cruris lateralis" EXACT [] is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0003663 ! hindlimb muscle [Term] id: UBERON:0017157 name: exoccipital-atlas joint def: "A synovial joint that connects a vertebral bone 1 and connects a exoccipital bone." [OBOL:automatic] synonym: "atlanto-exoccipital joint" EXACT [] is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0011138 ! postcranial axial skeletal system [Term] id: UBERON:0017160 name: lumen of hemipenial sheath def: "An anatomical space that is enclosed by a hemipenal sheath." [OBOL:automatic] synonym: "hemipenis sheath lumen" EXACT [] is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0017161 name: hemipenial mucuous gland def: "A gland within the hemipenial sheath that provides lubrication for the hemipenis." [ISBN:9781840765649] synonym: "mucuous gland of hemipenis sheath" EXACT [] is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0005399 ! male reproductive gland relationship: part_of UBERON:0008812 ! hemipenis [Term] id: UBERON:0017162 name: hemipenial holocrine gland def: "A holocrine gland that is part of a hemipenis." [OBOL:automatic] synonym: "holocrine gland of hemipenis" EXACT [] synonym: "holoctine gland of hemipenis sheath" EXACT [] synonym: "sebaceous gland of hemipenis sheath" RELATED INCONSISTENT [] is_a: UBERON:0005399 ! male reproductive gland is_a: UBERON:0012344 ! holocrine gland relationship: part_of UBERON:0008812 ! hemipenis [Term] id: UBERON:0017163 name: skin bony tubercle def: "A bony structure embedded in skin, roughly equivalent to osteoderms." [PHENOSCAPE:Nizar] synonym: "bony tubercle" BROAD [] synonym: "bony tubercles" RELATED OMO:0003004 [] is_a: UBERON:0005813 ! tubercle is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0017164 name: dorsal cloacal gland def: "Cloacal gland in female salamanders that secrete into the dorsal walls of the cloaca, anterior and / or posterior to the spermathecae or near the spermathecal common tube." [http://www.jstor.org/stable/1466953, PHENOSCAPE:wd] is_a: UBERON:0012478 ! cloacal gland relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0017180 name: hemipenis keratinized epithelium def: "A keratinized stratified squamous epithelium that is part of a hemipenis." [OBOL:automatic] synonym: "epithelium hemipenis sheath" RELATED [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012329 ! keratinized stratified squamous epithelium relationship: part_of UBERON:0008812 ! hemipenis [Term] id: UBERON:0017196 name: retractor lateralis muscle synonym: "m. retractor lateralis" EXACT [] synonym: "retractor lateralis" BROAD [] is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0017249 name: incisive process of premaxilla def: "A small protuberence on the lingual surface of the premaxilla, immediately posterior to the teeth." [PHENOSCAPE:alex] synonym: "incisive bone" RELATED [] synonym: "incisive process" RELATED [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla property_value: taxon_notes "in Squamates" xsd:string [Term] id: UBERON:0017258 name: placentome of cotyledonary placenta def: "An anatomical group consisting of a placental caruncle and a placental cotyldeon, a placental unit in some mammals such as ruminants." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/ruminants.html] synonym: "placentome" EXACT [PHENOSCAPE:ad] synonym: "placentomes" RELATED OMO:0003004 [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0017259 name: placental caruncle def: "An oval or round thickening in the uterine mucosa resulting from proliferation of subepithelial connective tissue, in the maternal side of the placentome." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/ruminants.html] is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0017258 ! placentome of cotyledonary placenta [Term] id: UBERON:0017261 name: intertarsal sesamoid def: "A sesamoid element that is part of a tarsal skeleton." [OBOL:automatic] synonym: "tarsal sesamoid" RELATED [] is_a: UBERON:0011141 ! appendicular ossicle is_a: UBERON:0013631 ! sesamoid element relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0017269 name: primary premolar tooth synonym: "deciduous premolar tooth" EXACT [] synonym: "primary bicuspid" RELATED [] synonym: "primary premolar" EXACT [] xref: SCTID:421227007 is_a: UBERON:0007115 ! deciduous tooth is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0017270 name: secondary premolar tooth synonym: "permanent premolar tooth" EXACT [] synonym: "secondary bicuspid" RELATED [] synonym: "secondary premolar" EXACT [] xref: SCTID:422038004 is_a: UBERON:0007120 ! premolar tooth is_a: UBERON:0007775 ! secondary tooth [Term] id: UBERON:0017271 name: upper primary premolar tooth synonym: "maxillary primary premolar tooth" EXACT [] synonym: "upper deciduous premolar tooth" EXACT [] is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0017269 ! primary premolar tooth is_a: UBERON:0018616 ! primary upper tooth [Term] id: UBERON:0017272 name: lower primary premolar tooth synonym: "lower deciduous premolar tooth" EXACT [] synonym: "mandibular primary premolar tooth" EXACT [] is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0017269 ! primary premolar tooth is_a: UBERON:0018617 ! primary lower tooth [Term] id: UBERON:0017294 name: horn of hemipenis synonym: "hemipenis horn" EXACT [] synonym: "hemipenis horns" RELATED OMO:0003004 [] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0008812 ! hemipenis [Term] id: UBERON:0017295 name: cingulum of tooth def: "The portion of the teeth, occurring on the lingual or palatal aspects, that forms a convex protuberance at the cervical third of the anatomic crown. It represents the lingual or palatal developmental lobe of these teeth." [Wikipedia:Cingulum_(tooth)] synonym: "cingulum (dentis)" EXACT [FMA:56731] synonym: "cingulum dentis" EXACT OMO:0003011 [FMA:56731, FMA:TA] synonym: "tooth cingulum" EXACT [FMA:56731] xref: FMA:56731 xref: SCTID:245650005 xref: Wikipedia:Cingulum_(tooth) is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0003675 {source="FMA"} ! tooth crown property_value: external_ontology_notes "FMA has no definition but places this generically with upper, lower, canine, incisor subclasses. Wiktionary states cingulum is lower jaw molar only, and cingulid is upper molar only" xsd:string [Term] id: UBERON:0017296 name: cingulum of incisor tooth synonym: "incisor tooth cingulum" EXACT [FMA:56733] xref: FMA:56733 is_a: UBERON:0017295 ! cingulum of tooth relationship: part_of UBERON:0001098 ! incisor tooth [Term] id: UBERON:0017297 name: cingulum of canine tooth synonym: "canine tooth cingulum" EXACT [FMA:56734] xref: FMA:56734 is_a: UBERON:0017295 ! cingulum of tooth relationship: part_of UBERON:0003674 ! cuspid [Term] id: UBERON:0017298 name: cingulum of upper incisor tooth synonym: "cingulum of maxillary incisor tooth" EXACT [FMA:56736] synonym: "upper incisor tooth cingulum" EXACT [FMA:56736] xref: FMA:56736 is_a: UBERON:0013613 ! upper jaw cingulum is_a: UBERON:0017296 ! cingulum of incisor tooth [Term] id: UBERON:0017299 name: cingulum of lower incisor tooth synonym: "cingulum of mandibular incisor tooth" EXACT [FMA:56737] synonym: "lower incisor tooth cingulum" EXACT [FMA:56737] xref: FMA:56737 is_a: UBERON:0013612 ! lower jaw cingulum is_a: UBERON:0017296 ! cingulum of incisor tooth [Term] id: UBERON:0017312 name: cingulum of upper canine tooth synonym: "cingulum of maxillary canine tooth" EXACT [FMA:56752] synonym: "upper canine tooth cingulum" EXACT [FMA:56752] xref: FMA:56752 is_a: UBERON:0013613 ! upper jaw cingulum is_a: UBERON:0017297 ! cingulum of canine tooth relationship: part_of UBERON:0018621 ! upper canine tooth [Term] id: UBERON:0017313 name: cingulum of lower canine tooth synonym: "cingulum of mandibular canine tooth" EXACT [FMA:56753] synonym: "lower canine tooth cingulum" EXACT [FMA:56753] xref: FMA:56753 is_a: UBERON:0013612 ! lower jaw cingulum is_a: UBERON:0017297 ! cingulum of canine tooth relationship: part_of UBERON:0018622 ! lower canine tooth [Term] id: UBERON:0017612 name: cingulum of lower jaw molar def: "A ridge that girdles the base of a lower molar tooth." [http://en.wiktionary.org/wiki/cingulid] synonym: "cingulid" BROAD [] synonym: "cingulid of molar tooth" EXACT [] synonym: "tooth cingulid" RELATED [] is_a: UBERON:0013612 ! lower jaw cingulum is_a: UBERON:0017614 ! cingulum of molar tooth [Term] id: UBERON:0017613 name: cingulum of upper jaw molar def: "A ridge that girdles the base of a upper molar tooth." [http://en.wiktionary.org/wiki/cingulum] synonym: "cingulum" BROAD [] is_a: UBERON:0013613 ! upper jaw cingulum is_a: UBERON:0017614 ! cingulum of molar tooth [Term] id: UBERON:0017614 name: cingulum of molar tooth is_a: UBERON:0017295 ! cingulum of tooth relationship: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0017615 name: vomerine dentition def: "A set of teeth in which each tooth that attaches to a vomer." [OBOL:automatic] synonym: "vomerine teeth" RELATED [] is_a: UBERON:0003672 ! dentition is_a: UBERON:0010314 ! structure with developmental contribution from neural crest [Term] id: UBERON:0017616 name: afferent spiracular artery def: "A section of a pharyngeal arch artery that carries blood away from the spiracle." [ISBN:0073040584] is_a: UBERON:0001637 ! artery [Term] id: UBERON:0017617 name: efferent spiracular artery def: "A section of a pharyngeal arch artery that drains the spiracle." [ISBN:0073040584] is_a: UBERON:0001637 ! artery [Term] id: UBERON:0017618 name: extensor pollicis brevis muscle def: "The Extensor pollicis brevis lies on the medial side of, and is closely connected with, the Abductor pollicis longus." [Wikipedia:Extensor_pollicis_brevis_muscle] subset: human_reference_atlas synonym: "extensor pollicis" RELATED [Wikipedia:Extensor_pollicis_brevis_muscle] synonym: "extensor pollicis brevis" EXACT [FMA:38518] xref: EMAPA:36195 xref: FMA:38518 xref: SCTID:244995005 xref: Wikipedia:Extensor_pollicis_brevis_muscle is_a: UBERON:0011024 ! extrinsic extensor muscle of manus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0017620 name: spine appendage of head def: "A spine appendage that is part of a head." [OBOL:automatic] is_a: UBERON:0008260 ! spine appendage relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0017621 name: cephalic spine def: "One of the spines, probably denticle derivatives, occurring singly or in pairs just behind the orbit on the cheek area in some fossil sharks. May have occurred only in males and may have served to hold the female during copulation, e.g. in the Jurassic genera Hybodus, Asteracanthus and Acrodus." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "cephalic spines" RELATED OMO:0003004 [] is_a: UBERON:0017620 ! spine appendage of head relationship: present_in_taxon NCBITaxon:119203 [Term] id: UBERON:0017623 name: prepelvic clasper def: "A supplemental clasper in Holocephali, in front of the pelvic fin." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "pre-pelvic tenaculum" EXACT [] synonym: "prepelvic tenaculum" EXACT [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:0010516 ! clasper [Term] id: UBERON:0017624 name: pseudoclasper def: "One or more pairs of stiff ossified lobes or prongs found in the tip of the intromittent organ of Bythitoidei." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0008811 ! intromittent organ [Term] id: UBERON:0017625 name: pterygopodial gland def: "A gland of uncertain function at the base of the clasper in skates and rays, occupying the position of the siphon of other Elasmobranchii." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:0002530 ! gland [Term] id: UBERON:0017626 name: transverse folds of rectum def: "Houston's valves (or transverse folds of rectum) are semi-lunar transverse folds of the rectal wall that protrude into the anal canal. Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate. Although the term rectum means straight, these transverse folds overlap each other during the empty state of the intestine to such an extent that, as Houston remarked, they require considerable maneuvering to conduct an instrument along the canal, as often occurs in sigmoidoscopy and colonoscopy. These folds are about 12 mm. in width and are composed of the circular muscle coat of the rectum. They are usually three in number; sometimes a fourth is found, and occasionally only two are present. One is situated near the commencement of the rectum, on the right side. A second extends inward from the left side of the tube, opposite the middle of the sacrum. A third, the largest and most constant, projects backward from the forepart of the rectum, opposite the fundus of the urinary bladder. When a fourth is present, it is situated nearly 2.5 cm above the anus on the left and posterior wall of the tube." [Wikipedia:Houston_valve] synonym: "Houston's valve" RELATED [Wikipedia:Houston_valve] synonym: "Houston's valve (middle of three)" EXACT [FMA:75657] synonym: "Houston's valves" RELATED [Wikipedia:Houston_valve] synonym: "Kohlrausch's fold (middle of three)" EXACT [FMA:75657] synonym: "plicae transversae recti" EXACT OMO:0003011 [FMA:TA] synonym: "set of transverse folds of rectum" EXACT [FMA:75657] synonym: "transverse folds of rectum" EXACT [FMA:75657] synonym: "transverse folds of rectum" RELATED [Wikipedia:Houston_valve] xref: FMA:75657 xref: Wikipedia:Houston_valve is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0017627 name: rectal valve def: "A thin diaphragm located in the posterior fifth of the intestine of some Centrolophidae, e.g. Seriolella punctata, Schedophilus huttoni and Psenes pellucidus, or in others a sphincter-like constriction, e.g. Seriolella brama. A deep purple fluid was confined to the valve in S. punctata, but was found throughout the intestine in the other two species referred to. The fluid might be used to void a coloured cloud to distract or deter a predator." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0017628 name: swim bladder gas gland def: "A structure with numerous blood vessels (retia mirabilia) in the gas bladder that secretes gases from the blood." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "fascis mirabilis" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "gas gland" EXACT [] synonym: "red gland" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "red gland of gas bladder" RELATED [] is_a: UBERON:0002530 ! gland is_a: UBERON:0005177 ! trunk region element relationship: part_of UBERON:0006860 ! swim bladder [Term] id: UBERON:0017629 name: mormyromast organ def: "An innervated group of cells in a round capsule at the end of a jelly-filled tube opening to the skin surface of Gymnarchidae and Mormyridae." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "mormyromast" EXACT [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "snout organ" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:0010521 ! electroreceptor organ relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0017631 name: calcified structure of brain xref: Wikipedia:Corpora_arenacea is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0017632 name: pineal corpora arenacea def: "A calcified structure of brain that is part of a pineal body." [OBOL:automatic] xref: SCTID:369232008 xref: Wikipedia:Corpora_arenacea is_a: UBERON:0017631 ! calcified structure of brain relationship: part_of UBERON:0001905 ! pineal body [Term] id: UBERON:0017633 name: choroid plexus corpora arenacea def: "A calcified structure of brain that is part of a choroid plexus." [OBOL:automatic] is_a: UBERON:0017631 ! calcified structure of brain relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0017634 name: xenarthrale def: "A supplementary intervertebral articulation found in xenarthrans characterized by two sets of zygapophyseal facets in the postdiaphragmatic vertebrae, one medial and one lateral to the met apophysis." [http://eurekamag.com/research/035/907/morphology-xenarthrous-vertebrae.php] synonym: "xenarthrous articulation" EXACT [] synonym: "xenarthrous joint" EXACT [] is_a: UBERON:0001468 ! intervertebral joint [Term] id: UBERON:0017635 name: paired venous dural sinus synonym: "paired dural venous sinus" EXACT [FMA:52568] xref: FMA:52568 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005486 ! venous dural sinus is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0017637 name: marginal venous sinus def: "A paired dural venous sinus at the rim of the foramen magnum." [PMID:20682099] subset: human_reference_atlas synonym: "intracranial marginal sinus" EXACT [] synonym: "marginal sinus" RELATED [FMA:50766] xref: EHDAA2:0001064 xref: EHDAA:8693 xref: FMA:50766 is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0017638 name: primitive marginal sinus def: "The primitive marginal sinuses (PMS) are embryonic sinuses forming the later superior sagittal sinus." [PMID:22744799] synonym: "marginal sinus" RELATED [] xref: EHDAA2:0001514 is_a: UBERON:0017635 ! paired venous dural sinus relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0017639 name: sinus of von Szily def: "A circular gap in the iris near the pupil between the layers of the optic cup (von Szily, 1902)." [DOI:10.1007/BF00413234, http://orcid.org/0000-0002-6601-2165] synonym: "marginal sinus" RELATED [] synonym: "marginal sinus (v. Szily)" EXACT [] synonym: "marginal sinus of von Szily" EXACT [] xref: SCTID:361511003 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003072 ! optic cup property_value: taxon_notes "In humans, present in month 3-7 pc." xsd:string [Term] id: UBERON:0017640 name: unpaired venous dural sinus synonym: "unpaired dural venous sinus" EXACT [FMA:52569] xref: FMA:52569 is_a: UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0017641 name: meningeal branch of spinal nerve def: "Branch of spinal nerve that innervates the structures of the vertebral column." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] subset: human_reference_atlas synonym: "ramus meningeus nervorum spinales" EXACT [FMA:5988] synonym: "recurrent meningeal branch of spinal nerve" EXACT [FMA:5988] synonym: "sinuvertebral branch of spinal nerve" EXACT [FMA:5988] synonym: "sinuvertebral nerve" RELATED [FMA:5988] xref: FMA:5988 xref: SCTID:308794007 xref: Wikipedia:Meningeal_branches_of_spinal_nerve is_a: UBERON:0001021 ! nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0017642 name: communicating branch of spinal nerve def: "Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans." [Wikipedia:Rami_communicans] subset: human_reference_atlas synonym: "rami communicantes" BROAD [Wikipedia:Rami_communicans] synonym: "rami communicantes of spinal nerve" RELATED [Wikipedia:Rami_communicans] xref: FMA:5874 xref: SCTID:310727003 xref: Wikipedia:Rami_communicans is_a: UBERON:0001021 ! nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0017643 name: external thoracic vein def: "Extension of the long thoracic vein that collects blood from the mammary glands." [ISBN:978-0226870137] synonym: "external mammary vein" RELATED [ISBN:978-0226870137] xref: EMAPA:37145 {source="MA:th"} xref: MA:0002236 is_a: UBERON:0005194 {source="MA"} ! thoracic vein [Term] id: UBERON:0017646 name: internal mammary vein def: "One of two veins running parallel to their corresponding internal mammary arteries that unite forming one vessel. These veins drain the chest wall into the innominate vein." [ncithesaurus:Internal_Mammary_Vein] xref: EMAPA:37159 {source="MA:th"} xref: MA:0002148 xref: NCIT:C32854 is_a: UBERON:0001638 {source="ncithesaurus"} ! vein [Term] id: UBERON:0017647 name: prevertebral muscle of neck def: "A prevertebral muscle that is part of a neck." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:25130 xref: MA:0003144 is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0008549 ! prevertebral muscle [Term] id: UBERON:0017648 name: ventral body wall def: "The ventral part of the body wall." [http://orcid.org/0000-0002-6601-2165] synonym: "anterior body wall" RELATED [FMA:86934] xref: EMAPA:37984 {source="MA:th"} xref: FMA:86934 is_a: UBERON:0000309 ! body wall relationship: part_of UBERON:0013235 ! ventrum [Term] id: UBERON:0017649 name: dorsal body wall def: "The dorsal part of the body wall." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000309 ! body wall relationship: part_of UBERON:0001137 ! dorsum [Term] id: UBERON:0017650 name: developing mesenchymal structure def: "A mesenchyme-derived anatomical entity undergoing a transtion to become another structure." [AEO:0001016, AEO:JB] xref: AEO:0001016 is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0017651 name: salivary gland primordium def: "A primordium that has the potential to develop into a saliva-secreting gland." [OBOL:automatic] is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0017652 name: intermaxillary gland (sensu Osteolepiformes) def: "A gland lodged in a fossa formed mainly of dermal bones, situated wholly in front of the nasal capsules of Osteolepiformes." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "intermaxillary gland" BROAD [] is_a: UBERON:0002530 ! gland [Term] id: UBERON:0017653 name: intermaxillary salivary gland def: "A gland located at the pre-nasal area being divided anteriorly by the ascendent processes of the intermaxillary bone." [DOI:10.1590/S0101-81751988000400003] synonym: "intermaxillary gland" BROAD [] is_a: UBERON:0001044 ! saliva-secreting gland relationship: part_of UBERON:0007375 ! roof of mouth relationship: present_in_taxon NCBITaxon:377294 property_value: function_notes "Although usually described in the literature as mucous, the secretory cells of the intermaxillary gland have serous characteristics." xsd:string property_value: taxon_notes "The intermaxillary gland is the first salivary gland to appear in the vertebrate evolution. Its duct system is uniformly lined by ciliated cells and scattered secretory cells. This indicates that in the evolution, of salivary glands, there was a diversification of the duct system, together with progressxve concentration of secretory cells in special áreas of this system" xsd:string {source="DOI:10.1590/S0101-81751988000400003"} [Term] id: UBERON:0017654 name: buccal gland def: "Any of the small racemose mucous glands in the mucous membrane lining the cheeks." [http://www.merriam-webster.com/medical/buccal%20gland] synonym: "cheek gland" RELATED [] xref: BTO:0005767 xref: SCTID:25421004 is_a: UBERON:0000414 ! mucous gland relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0017659 name: ventral surface of penis subset: pheno_slim synonym: "urethral surface of penis" EXACT [FMA:19624] xref: FMA:19624 is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0017670 name: bony part of cervical vertebral arch def: "A bony part of vertebral arch that is part of a cervical vertebral arch." [OBOL:automatic] subset: pheno_slim synonym: "bony part of arch of cervical vertebra" EXACT [FMA:29794] xref: FMA:29794 is_a: UBERON:0016419 ! bony part of vertebral arch relationship: part_of UBERON:0008434 ! cervical vertebral arch [Term] id: UBERON:0017671 name: bony part of vertebral arch of first sacral vertebra def: "A bony part of vertebral arch that is part of a sacral vertebra 1." [OBOL:automatic] subset: pheno_slim synonym: "bony part of vertebral arch of first sacral segment" EXACT [FMA:32395] xref: FMA:32395 is_a: UBERON:0016419 ! bony part of vertebral arch relationship: part_of UBERON:0004622 ! sacral vertebra 1 [Term] id: UBERON:0017672 name: abdominal viscera def: "A viscus that is part of a abdomen." [OBOL:automatic] subset: pheno_slim synonym: "abdominal viscera" EXACT [FMA:32413] synonym: "abdominal viscera set" EXACT [FMA:32413] synonym: "set of abdominal viscera" EXACT [FMA:32413] xref: FMA:32413 xref: FMA:67355 is_a: UBERON:0002075 ! viscus is_a: UBERON:0005172 ! abdomen element [Term] id: UBERON:0017690 name: internal surface of frontal bone subset: pheno_slim synonym: "facies interna (os frontale)" EXACT [FMA:52856] synonym: "facies interna ossis frontalis" EXACT OMO:0003011 [FMA:52856, FMA:TA] xref: FMA:52856 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] id: UBERON:0017692 name: internal surface of cranial base def: "Internal (endosteal) surface of the base of skull." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "basis cranii interna" EXACT OMO:0003011 [FMA:53128, FMA:TA] xref: FMA:53128 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002517 ! basicranium [Term] id: UBERON:0017716 name: thenar eminence def: "A raised fleshy area on the palm of the hand near the base of the thumb." [http://medical-dictionary.thefreedictionary.com/Thenar+muscle] subset: pheno_slim synonym: "thenar part of palm" EXACT [FMA:61520] xref: FMA:61520 xref: SCTID:362748007 xref: Wikipedia:Thenar_eminence is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0008878 {source="FMA"} ! palmar part of manus [Term] id: UBERON:0017717 name: hypothenar eminence def: "Hypothenar refers to a group of three muscles of the palm that control the motion of the little finger. The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi." [Wikipedia:Hypothenar_eminence] subset: pheno_slim synonym: "hypothenar part of palm" EXACT [FMA:61523] xref: FMA:61523 xref: SCTID:362749004 xref: Wikipedia:Hypothenar_eminence is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0008878 {source="FMA"} ! palmar part of manus [Term] id: UBERON:0017732 name: raphe of scrotum def: "A ridge of tissue that extends along the midline of the scrotum." [HPO:probinson] subset: pheno_slim synonym: "scrotal raphe" EXACT [FMA:75130] xref: FMA:75130 xref: SCTID:279583006 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: develops_from UBERON:0013241 ! embryonic urethral groove relationship: part_of UBERON:0001300 ! scrotum relationship: part_of UBERON:0035106 ! raphe of perineum property_value: development_notes "The scrotal raphe is formed when the embryonic, urethral groove closes (week 12 in humans)" xsd:string [Term] id: UBERON:0017748 name: lower primary incisor tooth def: "A primary incisor tooth that is part of a lower jaw region." [OBOL:automatic] subset: pheno_slim synonym: "deciduous lower incisor tooth" RELATED [FMA:84215] synonym: "lower deciduous incisor tooth" EXACT [FMA:84215] synonym: "primary lower incisor tooth" EXACT [] xref: FMA:84215 xref: SCTID:420793009 is_a: UBERON:0003451 ! lower jaw incisor is_a: UBERON:0016476 ! primary incisor tooth is_a: UBERON:0018617 ! primary lower tooth [Term] id: UBERON:0017749 name: withers def: "The ridge between the shoulder blades of a four-legged mammal." [Wikipedia:Withers] xref: SCTID:89778005 xref: Wikipedia:Withers is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001137 ! dorsum property_value: taxon_notes "The withers in horses are formed by the dorsal spinal processes of roughly the 3rd through 11th thoracic vertebrae (most horses have 18 thoracic vertebrae), which are unusually long in this area. The processes at the withers can be more than 12 inches (30 cm) long." xsd:string [Term] id: UBERON:0017750 name: proximal mesopodial endochondral element def: "A mesopodial endochondral element that is in the most proximal part of the mesopodial skeleton, connected to the zeugopodial skeleton." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0009878 ! mesopodial skeleton property_value: editor_note "awaiting approval by phenoscape curators" xsd:string [Term] id: UBERON:0017751 name: proximal mesopodial cartilage element def: "A proximal mesopodial endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015064 ! autopod cartilage is_a: UBERON:0017750 ! proximal mesopodial endochondral element [Term] id: UBERON:0018099 name: distal mesopodial endochondral element def: "An endochondral element in the distal portion of the mesopodial skeleton, between the central mesopodial skeleton and the metapodial skeleton." [http://orcid.org/0000-0002-6601-2165] synonym: "distal mesopodial" EXACT SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0009878 ! mesopodial skeleton property_value: editor_note "TODO add logical definition" xsd:string [Term] id: UBERON:0018100 name: distal mesopodial cartilage element def: "A distal mesopodial endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] is_a: UBERON:0015064 ! autopod cartilage is_a: UBERON:0018099 ! distal mesopodial endochondral element relationship: develops_from UBERON:0018101 ! distal mesopodial pre-cartilage condensation [Term] id: UBERON:0018101 name: distal mesopodial pre-cartilage condensation def: "A distal mesopodial endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0018099 ! distal mesopodial endochondral element [Term] id: UBERON:0018102 name: distal mesopodial bone def: "A distal mesopodial endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0018099 ! distal mesopodial endochondral element relationship: develops_from UBERON:0018100 ! distal mesopodial cartilage element [Term] id: UBERON:0018103 name: posterior fascicle of palatopharyngeus def: "The thinner portion of the muscle of the palatopharyngeal arch, originating in the region of the midline where its fibers interdigitate with the contralateral partner, then passing posterior to the levator veli palatini muscle to join the longitudinal layer of pharyngeal musculature; acts as a sort of sphincter, reducing the caliber of the isthmus of fauces at the palatopharyngeal arch." [http://medical-dictionary.thefreedictionary.com/velopharyngeal+sphincter] synonym: "fasciculus posterior (musculus palatopharyngeus)" EXACT [FMA:46684] synonym: "fasciculus posterior musculus palatopharyngei" EXACT OMO:0003011 [FMA:46684, FMA:TA] synonym: "musculus sphincter palatopharyngeus" EXACT [FMA:TA] synonym: "palatopharyngeal sphincter" EXACT [FMA:46684] synonym: "velopharyngeal sphincter" EXACT [http://medical-dictionary.thefreedictionary.com/velopharyngeal+sphincter] xref: FMA:46684 xref: SCTID:244801005 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010234 {source="FMA"} ! palatopharyngeus muscle [Term] id: UBERON:0018104 name: parafoveal part of retina def: "The intermediate belt surrounding the fovea centralis." [http://orcid.org/0000-0002-6601-2165] synonym: "parafoveal belt" RELATED [] synonym: "parafoveal retina" RELATED [] xref: SCTID:264120002 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000053 ! macula lutea property_value: structure_notes "ganglion cell layer is composed of more than five rows of cells, as well as the highest density of cones" xsd:string [Term] id: UBERON:0018105 name: perifoveal part of retina def: "The outermost region surrounding the fovea centralis." [http://orcid.org/0000-0002-6601-2165] synonym: "perifoveal belt" RELATED [] synonym: "perifoveal retina" RELATED [] xref: SCTID:280617008 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000053 ! macula lutea property_value: structure_notes "the ganglion cell layer contains two to four rows of cells" xsd:string [Term] id: UBERON:0018107 name: foveola of retina def: "A region of the fovea centralis that lies in the center of the fovea and contains only cone cells, and a cone-shaped zone of Müller cells." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "foveola" RELATED [] xref: SCTID:399857002 xref: Wikipedia:Foveola is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001786 ! fovea centralis relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "in humans is approximately 0.35 mm in diameter" xsd:string [Term] id: UBERON:0018108 name: superior auricular muscle def: "The superior auricular muscle, the largest of the three auriculares muscles, is also thin and fan-shaped. Its fibers arise from the galea aponeurotica, and converge to be inserted by a thin, flattened tendon into the upper part of the cranial surface of the auricula." [Wikipedia:Superior_auricular_muscle] synonym: "auricularis superior" EXACT [FMA:46855] xref: FMA:46855 xref: SCTID:244759009 xref: Wikipedia:Superior_auricular_muscle is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle [Term] id: UBERON:0018109 name: anterior auricular muscle def: "The anterior auricular muscle, the smallest of the three auriculares muscles, is thin and fan-shaped, and its fibers are pale and indistinct. It arises from the lateral edge of the galea aponeurotica, and its fibers converge to be inserted into a projection on the front of the helix." [Wikipedia:Anterior_auricular_muscle_muscle] synonym: "auricularis anterior" EXACT [FMA:46856] xref: FMA:46856 xref: Wikipedia:Anterior_auricular_muscle is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle [Term] id: UBERON:0018110 name: posterior auricular muscle def: "The posterior auricular muscle consists of two or three fleshy fasciculi, which arise from the mastoid portion of the temporal bone by short aponeurotic fibers. They are inserted into the lower part of the cranial surface of the concha." [Wikipedia:Posterior_auricular_muscle_muscle] synonym: "auricularis posterior" EXACT [FMA:46857] synonym: "post auricular muscle" RELATED [Wikipedia:Posterior_auricular_muscle] synonym: "post-auricular muscle" RELATED [Wikipedia:Posterior_auricular_muscle] xref: FMA:46857 xref: SCTID:244761000 xref: Wikipedia:Posterior_auricular_muscle is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle [Term] id: UBERON:0018111 name: muscle layer of rectum def: "A muscle layer that is part of the rectum." [http://orcid.org/0000-0002-6601-2165] synonym: "muscular coat of rectum" EXACT [FMA:15035] synonym: "muscularis externa of rectum" EXACT [FMA:15035] synonym: "rectal muscularis propria" EXACT [FMA:15035] synonym: "tunica muscularis (rectum)" EXACT [FMA:15035] synonym: "tunica muscularis recti" EXACT [FMA:TA] xref: FMA:15035 is_a: UBERON:0011198 ! muscle layer of large intestine relationship: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0018112 name: rectum smooth muscle tissue def: "Any portion of smooth muscle tissue that is part of the rectum." [http://orcid.org/0000-0002-6601-2165] synonym: "rectal smooth muscle tissue" EXACT [] synonym: "rectum smooth muscle" EXACT [] synonym: "smooth muscle of rectum" EXACT [] is_a: UBERON:0004220 ! large intestine smooth muscle is_a: UBERON:0004231 ! anal region smooth muscle is_a: UBERON:0016886 ! muscle tissue of terminal part of digestive tract relationship: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0018113 name: left kidney interstitium def: "A kidney interstitium that is part of a left kidney." [OBOL:automatic] synonym: "left renal stroma" EXACT [FMA:74271] synonym: "stroma of left kidney" EXACT [FMA:74271] xref: FMA:74271 is_a: UBERON:0005215 ! kidney interstitium relationship: part_of UBERON:0004538 ! left kidney [Term] id: UBERON:0018114 name: right kidney interstitium def: "A kidney interstitium that is part of a right kidney." [OBOL:automatic] synonym: "right renal stroma" EXACT [FMA:74270] synonym: "stroma of right kidney" EXACT [FMA:74270] xref: FMA:74270 is_a: UBERON:0005215 ! kidney interstitium relationship: part_of UBERON:0004539 ! right kidney [Term] id: UBERON:0018115 name: left renal pelvis def: "A renal pelvis that is part of a left ureter." [OBOL:automatic] synonym: "pelvis of left ureter" EXACT [FMA:15579] synonym: "renal pelvis of left kidney" EXACT [FMA:15579] xref: FMA:15579 xref: SCTID:243436005 is_a: UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001223 ! left ureter [Term] id: UBERON:0018116 name: right renal pelvis def: "A renal pelvis that is part of a right ureter." [OBOL:automatic] synonym: "pelvis of right kidney" EXACT [FMA:15578] synonym: "pelvis of right ureter" EXACT [FMA:15578] xref: FMA:15578 xref: SCTID:243419002 is_a: UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001222 ! right ureter [Term] id: UBERON:0018117 name: left renal cortex interstitium def: "A renal cortex interstitium that is part of a left kidney." [OBOL:automatic] synonym: "cortical interstitial tissue of left kidney" EXACT [] is_a: UBERON:0005270 ! renal cortex interstitium is_a: UBERON:0018113 ! left kidney interstitium [Term] id: UBERON:0018118 name: right renal cortex interstitium def: "A renal cortex interstitium that is part of a right kidney." [OBOL:automatic] synonym: "cortical interstitial tissue of right kidney" EXACT [] is_a: UBERON:0005270 ! renal cortex interstitium is_a: UBERON:0018114 ! right kidney interstitium [Term] id: UBERON:0018119 name: left renal medulla interstitium def: "A renal medulla interstitium that is part of a left kidney." [OBOL:automatic] synonym: "medullary interstitial tissue of left kidney" EXACT [] is_a: UBERON:0005211 ! renal medulla interstitium is_a: UBERON:0018113 ! left kidney interstitium [Term] id: UBERON:0018120 name: right renal medulla interstitium def: "A renal medulla interstitium that is part of a right kidney." [OBOL:automatic] synonym: "medullary interstitial tissue of right kidney" EXACT [] is_a: UBERON:0005211 ! renal medulla interstitium is_a: UBERON:0018114 ! right kidney interstitium [Term] id: UBERON:0018131 name: periovarian fat pad def: "The encapsulated adipose tissue associated with the ovaries." [http://orcid.org/0000-0002-6601-2165] synonym: "ovarian fat pad" RELATED [] synonym: "periovarian fat depot" EXACT [] xref: MA:0003064 is_a: UBERON:0003428 ! gonadal fat pad relationship: part_of UBERON:0000992 ! ovary [Term] id: UBERON:0018132 name: tail fat pad def: "Encapsulated adipose tissue that is part of a tail." [http://orcid.org/0000-0002-6601-2165] synonym: "tail fat depot" EXACT [] is_a: UBERON:0003599 ! tail connective tissue is_a: UBERON:0003916 ! fat pad relationship: present_in_taxon NCBITaxon:9258 relationship: present_in_taxon NCBITaxon:9305 relationship: present_in_taxon NCBITaxon:9935 relationship: seeAlso Tail:fat property_value: taxon_notes "The platypus uses its tail for storage of fat reserves (an adaptation also found in animals such as the Tasmanian devil and fat-tailed sheep)" xsd:string {source="WP"} [Term] id: UBERON:0018133 name: monotreme bill def: "An elongated snout found in monotremes." [http://orcid.org/0000-0002-6601-2165] synonym: "beak" BROAD [] synonym: "montreme beak" RELATED [] synonym: "platypus beak" RELATED [] synonym: "platypus bill" NARROW [] is_a: UBERON:0006333 ! snout [Term] id: UBERON:0018134 name: rugal fold of scrotum def: "A folded ridge of skin that is part of a scrotum superficial to the dartos muscle." [http://orcid.org/0000-0002-6601-2165] synonym: "folded ridge of skin of scrotum" EXACT OMO:0003004 [] synonym: "scrotal rugae" EXACT OMO:0003004 [] is_a: UBERON:0015479 ! scrotum skin relationship: part_of UBERON:0015479 ! scrotum skin [Term] id: UBERON:0018135 name: fibrocollagenous connective tissue xref: FMA:83521 is_a: UBERON:0011824 ! fibrous connective tissue [Term] id: UBERON:0018136 name: maxillary fenestra def: "A fenestra or hole which pierces the maxilla anterior to the antorbital fenestra." [http://palaeos.com/vertebrates/glossary/glossaryM.html] is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0018137 name: premaxillary fenestra def: "A fenestra that is part of a premaxilla." [OBOL:automatic] is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:0002244 ! premaxilla [Term] id: UBERON:0018140 name: mammary lobe def: "A cluster of mammary gland lobules. In humans this is a distinct lobe and located in the breast region." [http://orcid.org/0000-0002-6601-2165] synonym: "breast lobe" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] synonym: "lobe of breast" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] synonym: "lobe of mammary gland" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] synonym: "lobi glandulae mammariae" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] synonym: "lobus glandulae mammariae" RELATED OMO:0003011 [BTO:0004718] xref: BTO:0004718 xref: NCIT:C93232 xref: UMLS:C0222616 is_a: UBERON:0009912 ! anatomical lobe relationship: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0002100 ! trunk property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI property_value: editor_note "The FMA class 'lactiferous gland' may be equivalent to this" xsd:string [Term] id: UBERON:0018141 name: anterior perforated substance def: "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989)." [BIRNLEX:1096] synonym: "anterior perforated area" EXACT [FMA:61891] synonym: "anterior perforated space" EXACT [FMA:61891] synonym: "area olfactoria (Mai)" RELATED OMO:0003011 [NeuroNames:282] synonym: "eminentia parolfactoria" RELATED OMO:0003011 [NeuroNames:282] synonym: "olfactory area (Carpenter)" RELATED [NeuroNames:282] synonym: "olfactory area (mai)" EXACT [FMA:61891] synonym: "olfactory tubercle" RELATED INCONSISTENT [FMA:61891] synonym: "olfactory tubercle (Ganser)" RELATED [NeuroNames:282] synonym: "rostral perforated substance" RELATED [NeuroNames:282] synonym: "substantia perforata anterior" EXACT OMO:0003011 [Wikipedia:Anterior_perforated_substance] synonym: "tuber olfactorium" RELATED OMO:0003011 [NeuroNames:282] xref: BAMS:APS xref: BIRNLEX:1096 xref: DHBA:10642 xref: FMA:61891 xref: neuronames:282 {source="BIRNLEX:1096"} xref: SCTID:369108006 xref: UMLS:C0162436 {source="BIRNLEX:1096"} xref: Wikipedia:Anterior_perforated_substance is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon property_value: external_definition "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." xsd:string {source="FMA:61891"} [Term] id: UBERON:0018142 name: caudal vertebra endochondral element alt_id: UBERON:0015006 def: "Any vertebra endochondral element that is part of the caudal region of the vertebral column (tail or coccyx)." [http://orcid.org/0000-0002-6601-2165] synonym: "caudal vertebra element" EXACT [] synonym: "coccygeal vertebra element" NARROW [] synonym: "coccyx vertebra element" NARROW [] synonym: "tail vertebra element" EXACT [] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010913 ! vertebral element relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0018143 name: transverse process of cervical vertebra def: "A transverse process that is part of a cervical vertebra." [http://orcid.org/0000-0002-6601-2165] xref: FMA:23894 xref: FMA:9913 xref: SCTID:280730000 is_a: UBERON:0001077 ! transverse process of vertebra relationship: part_of UBERON:0002413 ! cervical vertebra property_value: taxon_notes "May be homologous with the cervical ribs of some vertebrates" xsd:string [Term] id: UBERON:0018144 name: cervical rib def: "A rib that is attached to a cervical vertebra." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37825 {source="MA:th"} xref: MESH:D057070 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002228 ! rib is_a: UBERON:0003458 ! neck bone relationship: never_in_taxon NCBITaxon:9606 {source="should be all Theria, see https://github.com/obophenotype/mouse-anatomy-ontology/issues/116"} relationship: part_of UBERON:0005434 ! cervical region property_value: editor_note "Trunk, presacral and sacral ribs do not have a 'part of some region' asserted for them, we should add it to them[PHENOSCAPE:ad]" xsd:string property_value: taxon_notes "May be homologous with the transverse processes of cervical vertebra" xsd:string [Term] id: UBERON:0018145 name: lumbar rib def: "A rib that is attached to a lumbar vertebra." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002228 ! rib relationship: never_in_taxon NCBITaxon:32525 property_value: taxon_notes "May be homologous with the transverse processes of lumbar vertebra" xsd:string [Term] id: UBERON:0018146 name: transverse process of lumbar vertebra def: "A transverse process that is part of a lumbar vertebra." [http://orcid.org/0000-0002-6601-2165] synonym: "costa lumbalis" EXACT OMO:0003011 [FMA:65469, FMA:TA] synonym: "lumbar transverse process" EXACT [FMA:16080] xref: FMA:16080 xref: FMA:65469 xref: SCTID:280733003 is_a: UBERON:0001077 ! transverse process of vertebra relationship: part_of UBERON:0002414 ! lumbar vertebra property_value: taxon_notes "May be homologous with the lumbar ribs of some vertebrates" xsd:string [Term] id: UBERON:0018148 name: ampullary gland secretion def: "A bodily secretion that produced_by a ampullary gland." [OBOL:automatic] is_a: UBERON:0006530 ! seminal fluid [Term] id: UBERON:0018149 name: angle of oral opening def: "The lateral limit of each lateral part of the oral fissure." [https://orcid.org/0000-0002-2825-0621, https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/Angle-of-mouth] comment: Serves as attachment site for zygomaticus major muscle. synonym: "angle of mouth" EXACT [FMA:77269] synonym: "mouth angle" EXACT [FMA:77269] xref: FMA:77269 xref: MFMO:0000145 xref: SCTID:263940002 is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000166 {source="MFMO-modified"} ! oral opening property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd:string [Term] id: UBERON:0018150 name: skin of lower lip def: "A zone of skin that is part of a lower lip." [OBOL:automatic] synonym: "lower lip skin" EXACT [FMA:24767] xref: FMA:24767 xref: SCTID:281630002 is_a: UBERON:0001458 ! skin of lip relationship: part_of UBERON:0001835 ! lower lip [Term] id: UBERON:0018151 name: skin of upper lip def: "A zone of skin that is part of a upper lip." [OBOL:automatic] synonym: "upper lip skin" EXACT [FMA:24765] xref: FMA:24765 xref: SCTID:281629007 is_a: UBERON:0001458 ! skin of lip relationship: part_of UBERON:0001834 ! upper lip [Term] id: UBERON:0018152 name: pars flaccida of tympanic membrane def: "A small, triangular, flaccid portion of the tympanic membrane, or eardrum, lying above the malleolar folds, attached directly to the petrous bone at the notch of Rivinus." [Wikipedia:Pars_flaccida_of_tympanic_membrane] synonym: "flaccid part" RELATED [Wikipedia:Pars_flaccida_of_tympanic_membrane] synonym: "pars flaccida" RELATED [Wikipedia:Pars_flaccida_of_tympanic_membrane] synonym: "pars flaccida (membrana tympanica)" EXACT OMO:0003011 [FMA:56721] synonym: "pars flaccida membranae tympanicae" EXACT OMO:0003011 [FMA:56721, FMA:TA] synonym: "Shrapnell's membrane" EXACT [FMA:56721] xref: FMA:56721 xref: SCTID:279594005 xref: Wikipedia:Pars_flaccida_of_tympanic_membrane is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane property_value: taxon_notes "Size varies across mammals, with the sheep pars flaccida larger than the human" xsd:string {source="http://audilab.bmed.mcgill.ca/AudiLab/teach/me_saf/me_saf.html"} [Term] id: UBERON:0018153 name: pars tensa of tympanic membrane synonym: "pars tensa (membrana tympanica)" EXACT [FMA:56722] synonym: "pars tensa membranae tympanicae" EXACT OMO:0003011 [FMA:56722, FMA:TA] xref: FMA:56722 xref: SCTID:362555006 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane [Term] id: UBERON:0018154 name: ligament of middle ear def: "A ligament that is part of a middle ear." [OBOL:automatic] is_a: UBERON:0000211 ! ligament relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0018155 name: posterior incudal ligament def: "A fold of mucous membrane that runs from the fossa incudus to the incus." [ISBN:9781604061550] is_a: UBERON:0008841 ! suspensory ligament is_a: UBERON:0018154 ! ligament of middle ear [Term] id: UBERON:0018156 name: malleal ligament def: "A skeletal ligament that attaches to the malleus." [ISBN:9781604061550] is_a: UBERON:0008846 ! skeletal ligament is_a: UBERON:0018154 ! ligament of middle ear [Term] id: UBERON:0018157 name: lateral malleal ligament def: "A malleal ligament that extends from the bony margin of the notch of Rivinus to the neck of the malleus." [ISBN:9781604061550] is_a: UBERON:0018156 ! malleal ligament [Term] id: UBERON:0018158 name: superior malleal ligament def: "A malleal ligament that extends from the tempen tympani to the head of the malleus." [ISBN:9781604061550] is_a: UBERON:0018156 ! malleal ligament [Term] id: UBERON:0018159 name: anterior malleal ligament def: "A malleal ligament that extends from the anterior tympanic wall to the anterior process of the malleus." [ISBN:9781604061550] is_a: UBERON:0018156 ! malleal ligament [Term] id: UBERON:0018160 name: anterior process of malleus synonym: "folian process" EXACT [FMA:52771] synonym: "processus anterior (malleus)" EXACT [FMA:52771] synonym: "processus anterior mallei" EXACT OMO:0003011 [FMA:52771, FMA:TA] synonym: "rau's process" EXACT [FMA:52771] xref: FMA:52771 xref: SCTID:368922002 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone [Term] id: UBERON:0018161 name: annular ligament of stapes def: "A ring of fibrous tissue that connects the base of the stapes to the oval window of the inner ear." [Wikipedia:Annular_ligament_of_stapes] synonym: "annular ligament" BROAD [Wikipedia:Annular_ligament_of_stapes] synonym: "annular ligament of base of stapes" EXACT [] synonym: "annular stapedial ligament" EXACT [Wikipedia:Annular_ligament_of_stapes] synonym: "ligamentum anulare stapedis" EXACT OMO:0003011 [Wikipedia:Annular_ligament_of_stapes] xref: FMA:60884 xref: SCTID:368936007 xref: Wikipedia:Annular_ligament_of_stapes is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0018226 name: pulmonary part of lymphatic system def: "An organ system subdivision that is the part of the lymphoid system that includes the pulmonary lymphatic vessels." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "pulmonary lymphatic chain" EXACT [FMA:67999] synonym: "pulmonary lymphatic vasculature" RELATED [] xref: FMA:67999 is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system [Term] id: UBERON:0018227 name: pulmonary lymphatic vessel def: "A lymphatic vessel that is part of a lung." [OBOL:automatic] subset: human_reference_atlas synonym: "lymphatic vessel of lung" EXACT [] xref: FMA:234006 xref: SCTID:321862009 is_a: UBERON:0003456 ! respiratory system lymphatic vessel relationship: part_of UBERON:0018226 ! pulmonary part of lymphatic system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018228 name: extrahepatic branch of portal vein synonym: "extrahepatic part of portal vein" EXACT [FMA:15418] xref: FMA:15418 xref: SCTID:273304006 is_a: UBERON:0002017 {source="MA"} ! portal vein [Term] id: UBERON:0018229 name: renin-angiotensin system def: "A system consisting of renin, angiotensin-converting enzyme, and angiotensin II. Renin, an enzyme produced in the kidney, acts on angiotensinogen, an alpha-2 globulin produced by the liver, forming angiotensin I. The converting enzyme contained in the lung acts on angiotensin I in the plasma converting it to angiotensin II, the most powerful directly pressor substance known. It causes contraction of the arteriolar smooth muscle and has other indirect actions mediated through the adrenal cortex." [MESH:G06.535.805] subset: pheno_slim synonym: "renin angiotensin aldosterone system" RELATED [MESH:G06.535.805] synonym: "renin angiotensin system" RELATED [MESH:G06.535.805] synonym: "renin-angiotensin system" RELATED [MESH:G06.535.805] synonym: "renin-angiotensin-aldosterone system" RELATED [MESH:G06.535.805] xref: FMA:74787 xref: MESH:D012084 is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0000949 ! endocrine system property_value: curator_notes "may be replaced by a GO process in future" xsd:string [Term] id: UBERON:0018230 name: femoral canal def: "The compartment of the femoral sheath that contains efferent lymphatic vessels and a lymph node embedded in a small amount of areolar tissue. It is conical in shape and is about 2 cm long. The femoral canal is bordered: Anteriorly by the inguinal ligament Posteriorly by the pectineal ligament Medially by the lacunar ligament Laterally by the femoral vein It contains the lymph nodes of Cloquet or Rosenmuller. It should not be confused with the nearby adductor canal." [Wikipedia:Femoral_canal] xref: FMA:22405 xref: SCTID:361912001 xref: Wikipedia:Femoral_canal is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0002355 ! pelvic region of trunk [Term] id: UBERON:0018231 name: labyrinthine artery def: "A long slender branch of the anterior inferior cerebellar artery (85%-100% cases) or basilar artery (<15% cases), arises from near the middle of the artery; it accompanies the vestibulocochlear nerve through the internal acoustic meatus, and is distributed to the internal ear." [Wikipedia:Labyrinthine_artery] subset: human_reference_atlas synonym: "arteria auditiva interna" EXACT OMO:0003011 [Wikipedia:Labyrinthine_artery] synonym: "arteria labyrinthi" EXACT OMO:0003011 [Wikipedia:Labyrinthine_artery] synonym: "artery of inner ear" BROAD [FMA:50548] synonym: "internal auditory artery" EXACT [FMA:50548] xref: EMAPA:37093 {source="MA:th"} xref: FMA:50548 xref: NCIT:C32834 xref: SCTID:148672009 xref: Wikipedia:Labyrinthine_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:0001846 ! internal ear relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018232 name: axillary sweat gland def: "A sweat gland that is part of a axilla." [OBOL:automatic] synonym: "axillary apocrine sweat gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "sweat gland of axilla" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000382 {source="ISBN:0123813611"} ! apocrine sweat gland relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} relationship: part_of UBERON:0009472 ! axilla [Term] id: UBERON:0018233 name: gland of Zeis def: "Glands of Zeis are unilobar sebaceous glands located on the margin of the eyelid. The glands of Zeis service the eyelash. These glands produce an oily substance that is issued through the excretory ducts of the sebaceous lobule into the middle portion of the hair follicle." [Wikipedia:Gland_of_Zeis] subset: pheno_slim synonym: "ciliary sebaceous gland of eyelid" EXACT [FMA:59191] synonym: "gland of Zeis" EXACT [] synonym: "gland of Zeiss" EXACT [FMA:59191] synonym: "Zeis gland" EXACT [] xref: FMA:59191 xref: SCTID:281070008 xref: Wikipedia:Gland_of_Zeis is_a: UBERON:0013231 ! sebaceous gland of eyelid [Term] id: UBERON:0018234 name: stroma of pancreas def: "A stroma that is part of a pancreas." [OBOL:automatic] subset: human_reference_atlas synonym: "pancreatic stroma" EXACT [FMA:63121] xref: FMA:63121 is_a: UBERON:0003891 ! stroma relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018235 name: capsule of pancreas def: "A capsule that divides the parenchyma of the pancreas into lobes and lobules." [ISBN:0123813611] synonym: "pancreatic capsule" EXACT [] is_a: UBERON:0003893 ! capsule relationship: part_of UBERON:0001264 ! pancreas property_value: structure_notes "typically thin but can thicken with age" xsd:string [Term] id: UBERON:0018236 name: nucleus of Bischoff def: "A midline nucleus of the dorsal motor column found in animals with a prominent tail, including alligator, some birds, kangaroo, rat, shrew, great anteater." [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of Bishoff" EXACT [] is_a: UBERON:0018238 {source="ISBN:978-1-4615-0037-7"} ! dorsal column nucleus relationship: present_in_taxon NCBITaxon:10088 {notes="possible present in mouse", source="ISBN:0123813611"} [Term] id: UBERON:0018237 name: dorsal column-medial lemniscus pathway def: "A sensory tract originating in the spinal cord responsible for transmitting fine touch, vibration and conscious proprioceptive information from the body to the cerebral cortex. The components include the fasciculus gracilis and fasciculus cuneatus." [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "DCML" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "DCML pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column tract" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column-medial lemniscus pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column-medial lemniscus system" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column-medial lemniscus tract" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "medial lemniscus tracts" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column-medial leminscus pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column-medial lemniscus system" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column/medial leminscus pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] xref: DMBA:17759 xref: Wikipedia:Posterior_column-medial_lemniscus_pathway is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0018238 name: dorsal column nucleus def: "A nucleus that contain secondary neurons of the dorsal column-medial lemniscus pathway, which carries fine touch and proprioceptive information from the body to the brain. Examples: gracile nucleus, cuneat nucleus, nucleus of Bishoff." [ISBN:978-1-4615-0037-7] synonym: "dorsal column nuclei" RELATED OMO:0003004 [NeuroNames:1947] xref: MBA:720 xref: neuronames:1947 xref: Wikipedia:Dorsal_column_nuclei is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway [Term] id: UBERON:0018239 name: rhombomere boundary def: "A boundary delimiting a rhombomere." [GO:0021654] synonym: "rhombomere junction" EXACT [] is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0007277 ! presumptive hindbrain [Term] id: UBERON:0018240 name: panniculus carnosus muscle def: "The skeletal muscle layer in the superficial fascia deep to the panniculus adiposus." [ISBN:0123813611, MP:0011157, Wikipedia:Panniculus_carnosus] synonym: "panniculus" BROAD [] synonym: "panniculus carnosus" EXACT [] synonym: "panniculus carnosus group" EXACT [MA:0003141] xref: EMAPA:18189 xref: EMAPS:1818928 xref: MA:0003141 xref: Wikipedia:Panniculus_carnosus is_a: UBERON:0008876 ! hypodermis skeletal muscle layer relationship: never_in_taxon NCBITaxon:9606 {notes="vestigial or barely detectable"} relationship: present_in_taxon NCBITaxon:9261 {notes="by contraction of various parts of the panniculus carnosus, the short-beaked echidna can change shape, the most characteristic shape change being achieved by rolling itself into a ball when threatened, so protecting its belly and presenting a defensive array of sharp spines"} property_value: function_notes "They act to raise hair, quills, feathers, etc. It is also used in 'twitch' reflexes to shake off insects, etc.[Palaeos]" xsd:string property_value: has_relational_adjective "pannicular" xsd:string property_value: structure_notes "fine, flat muscles within the hypodermis. Their origin is in the deep fascia of bone and they insert into superficial skin." xsd:string property_value: taxon_notes "In humans, the platysma has features of the panniculaus carnosus[ISBN:0123813611]." xsd:string [Term] id: UBERON:0018241 name: prime adult stage def: "A life cycle stage that starts at completion of development and growth of the sexually mature adult animal, and ends before senescence." [Bgee:AN, https://github.com/obophenotype/uberon/issues/496] synonym: "adulthood stage" RELATED [] xref: AcarDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: BtauDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CfamDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: ChirDv:0000036 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: CporDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EcabDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: FcatDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000077 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000226 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000022 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000136 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OanaDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OcunDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PpanDv:0000017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000059 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000113 ! post-juvenile adult stage [Term] id: UBERON:0018242 name: palatine bone horizontal plate def: "The part of the palatine bone that forms the posterior part (approximately one third) of the bony palate.(Stedmans)." [http://www.medilexicon.com/medicaldictionary.php?t=69540, MGI:cs] subset: pheno_slim synonym: "horizontal part of palatine bone" RELATED [Wikipedia:Horizontal_plate_of_palatine_bone] synonym: "horizontal plate" RELATED [Wikipedia:Horizontal_plate_of_palatine_bone] synonym: "horizontal plate of palatine bone" EXACT [FMA:52901] synonym: "lamina horizontalis" BROAD [] synonym: "lamina horizontalis (os palatinum)" EXACT [FMA:52901] synonym: "lamina horizontalis ossis palatini" EXACT OMO:0003011 [http://www.medilexicon.com/medicaldictionary.php?t=69540] xref: EMAPA:37931 {source="MA:th"} xref: FMA:52901 xref: SCTID:368686004 xref: Wikipedia:Horizontal_plate_of_palatine_bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001682 ! palatine bone [Term] id: UBERON:0018243 name: thymic artery def: "A vein that supplies blood to the thymus." [http://orcid.org/0000-0002-6601-2165] comment: The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP] subset: human_reference_atlas synonym: "thymic arteries" RELATED OMO:0003004 [Wikipedia:Thymic_branches_of_internal_thoracic_artery] synonym: "thymic branch of internal thoracic artery" EXACT [FMA:10647] xref: FMA:10647 xref: SCTID:76543001 xref: Wikipedia:Thymic_branches_of_internal_thoracic_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018244 name: superficial cervical thymus def: "A cervical thymus that is located directly beneath the skin." [DOI:10.1071/ZO9730285] is_a: UBERON:0009114 ! cervical thymus relationship: present_in_taxon NCBITaxon:9263 property_value: taxon_notes "apparently absent in polyprotodont species (Didelphidae, Dasyuridae, Thylacinidae, Notoryctidae, Peramelidae, and Caenolestidae); paired lobes found in diprotodont (Burramyidae, Petauridae, Phalangeridae, Phascolarctidae, and Tarsipedidae)[DOI:10.1071/ZO9730285]" xsd:string [Term] id: UBERON:0018245 name: deep cervical thymus def: "A cervical thymus that is located deep in the ventral cervical region, superficial to hyoid, sternomastoid, and depressor neck muscles." [DOI:10.1071/ZO9730285] is_a: UBERON:0009114 ! cervical thymus [Term] id: UBERON:0018246 name: thyroid vein def: "A vein that drains a thyroid gland." [OBOL:automatic] xref: EMAPA:18648 xref: SCTID:303420005 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0018247 name: cervical thymic artery def: "An artery that supplies a cervical thymus." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0018243 ! thymic artery [Term] id: UBERON:0018248 name: inferior superficial cervical thymic artery is_a: UBERON:0018247 ! cervical thymic artery [Term] id: UBERON:0018249 name: superior superficial cervical thymic artery is_a: UBERON:0018247 ! cervical thymic artery [Term] id: UBERON:0018250 name: middle thyroid artery is_a: UBERON:0003847 ! thyroid artery is_a: UBERON:0035398 ! branch of external carotid artery property_value: taxon_notes "In Cavio cobaya, arises from the external carotid or distal half of the common carotid artery, passed the thyroid gland cranially or penetrated it to terminate in the inferior laryngeal artery" xsd:string [Term] id: UBERON:0018251 name: meningeal vein def: "One of the veins draining a meninix." [http://orcid.org/0000-0002-6601-2165] xref: FMA:50839 xref: SCTID:84842006 is_a: UBERON:0001638 ! vein property_value: taxon_notes "In humans, any of several veins that accompany the meningeal arteries, communicate with the sinuses of the dura mater and diploic veins, and drain into the regional veins outside the cranial vault." xsd:string [Term] id: UBERON:0018252 name: internal pudendal vein def: "Accompanying vein of internal pudendal artery." [Wikipedia:Internal_pudendal_veins] subset: human_reference_atlas synonym: "internal pudic vein" RELATED [Wikipedia:Internal_pudendal_veins] synonym: "vena pudenda interna" EXACT OMO:0003011 [Wikipedia:Internal_pudendal_veins] xref: FMA:18917 xref: SCTID:14885008 xref: Wikipedia:Internal_pudendal_veins is_a: UBERON:0009029 ! pudendal vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: taxon_notes "In humans, they begin in the deep veins of the penis which issue from the corpus cavernosum penis, accompany the internal pudendal artery, and unite to form a single vessel, which ends in the internal iliac vein. They receive the veins from the urethral bulb, and the perineal and inferior hemorrhoidal veins" xsd:string [Term] id: UBERON:0018253 name: external pudendal vein def: "One of the veins of the pelvis which drain into the great saphenous vein." [Wikipedia:External_pudendal_vein] subset: human_reference_atlas synonym: "external pudic vein" RELATED [Wikipedia:External_pudendal_veins] synonym: "vena pudenda externa" EXACT OMO:0003011 [Wikipedia:External_pudendal_veins] xref: FMA:0329308 xref: SCTID:9231002 is_a: UBERON:0009029 ! pudendal vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018254 name: skeletal musculature subset: grouping_class subset: human_reference_atlas xref: EHDAA2:0001842 xref: EMAPA:35578 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000383 {source="MA"} ! musculature of body relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "Added for consistency with MA EMAPA and EHDAA2. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/104" xsd:string [Term] id: UBERON:0018255 name: jejunal artery def: "A branch of the superior mesenteric artery that supplies the jejunum." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Jejunal_veins] subset: human_reference_atlas synonym: "jejunal branch of superior mesenteric artery" RELATED [FMA:14808] xref: FMA:14808 xref: SCTID:265391008 xref: Wikipedia:Jejunal_arteries is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018256 name: lacrimal vein def: "A vein that drains a lacrimal gland." [OBOL:automatic] subset: human_reference_atlas xref: FMA:51779 xref: SCTID:149582008 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018257 name: submucosa of digestive tract def: "Any portion of submucosa that lines the digestive tract." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000009 ! submucosa relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0018260 name: layer of muscle tissue def: "Any organ component layer that consists of muscle tissue." [http://orcid.org/0000-0002-6601-2165] xref: FMA:45634 xref: NCIT:C75444 xref: UMLS:C0225358 is_a: UBERON:0004923 ! organ component layer property_value: external_ontology_notes "NCITA class may refer to smooth muscle only" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0018261 name: muscular coat of digestive tract def: "A muscular coat that is part of a digestive tract." [OBOL:automatic] synonym: "muscular layer of digestive tract" RELATED [] synonym: "muscularis externa of digestive tract" RELATED [] synonym: "tunica externa of digestive tract" RELATED [] synonym: "tunica muscularis of digestive tract" EXACT [] is_a: UBERON:0006660 ! muscular coat relationship: part_of UBERON:0001555 ! digestive tract property_value: function_notes "responsible for gut movement, such as peristalsis" xsd:string [Term] id: UBERON:0018262 name: dorsal zone of medial entorhinal cortex synonym: "dorsal zone of the medial part of the entorhinal area" RELATED [NeuroNames:3141] synonym: "entorhinal area, medial part, dorsal zone" EXACT [ABA:ENTm] synonym: "entorhinal area, medial part, dorsal zone" RELATED [NeuroNames:3141] synonym: "entorhinal area, medial part, dorsal zone, layers 1-6" RELATED [NeuroNames:3141] xref: MBA:926 xref: neuronames:3141 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] id: UBERON:0018263 name: ventral zone of medial entorhinal cortex synonym: "entorhinal area, medial part, ventral zone" EXACT [ABA:ENTmv] synonym: "entorhinal area, medial part, ventral zone" RELATED [NeuroNames:3142] synonym: "entorhinal area, medial part, ventral zone [Haug]" RELATED [NeuroNames:3142] synonym: "ventral zone of the medial part of the entorhinal area" RELATED [NeuroNames:3142] xref: MBA:934 xref: neuronames:3142 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] id: UBERON:0018264 name: dorsal lateral ganglionic eminence def: "The dorsal region of the lateral ganglionic eminence. The cells in this area give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb." [GO:0021851] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004025 ! lateral ganglionic eminence [Term] id: UBERON:0018265 name: anterior root of zygomatic arch def: "The anterior or rostral end of the zygomatic arch, which includes the temporal process of the zygomatic bone, but also including some of the body of the zygomatic bone. It may also include the zygomatico-temporal suture and the most rostral portion of the zygomatic process of the temporal bone." [MFMO:0000109] xref: MFMO:0000109 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002500 {source="MFMO"} ! zygomatic arch property_value: editor_note "requires definition see https://github.com/obophenotype/uberon/issues/492" xsd:string [Term] id: UBERON:0018266 name: third phalanx def: "The third phalangeal bone in a digit ray." [PHENOSCAPE:nizar] is_a: UBERON:0003221 ! phalanx property_value: editor_note "to be discussed. Should this class be used for the distal phalanges on a 3-phalanx ray (e.g. human finger 2?)" xsd:string [Term] id: UBERON:0018267 name: atlantal spinal nerve foramen def: "Foramen housing the root of the spinal nerve seen in the neural arch of the first vertebrae (atlas). (see Edwards 1976)." [PHENOSCAPE:nizar] is_a: UBERON:0005744 ! bone foramen is_a: UBERON:4200105 ! nerve foramen relationship: part_of UBERON:0005814 ! arch of atlas property_value: taxon_notes "In extant taxa this is restricted to some members of Caudata" xsd:string [Term] id: UBERON:0018268 name: type 1 adrenal tissue def: "Adrenal tissue dispersed in clusters, found in periphery and center of adrenal gland in turtles (Yadav, 2008)." [PHENOSCAPE:nizar] synonym: "type 1 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue [Term] id: UBERON:0018269 name: type 2 adrenal tissue def: "Adrenal tissue aggregated in a dorsal layer covering internal cords, found in lepidosaur adrenal glands. Islets of adrenal tissue found on ventral surface of gland (barely present in squamates). See Yadav, 2008." [PHENOSCAPE:nizar] synonym: "type 2 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue [Term] id: UBERON:0018270 name: type 3 adrenal tissue def: "Adrenal tissue found in archosaurs - tissue arranged in bands, alternating with interrenal cords (Yadav, 2008)." [PHENOSCAPE:nizar] synonym: "type 3 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue [Term] id: UBERON:0018271 name: type 4 adrenal tissue def: "In mammals, adrenal tissue has a cortex and medulla creating a composite adrenal gland (Kardong 2012)." [PHENOSCAPE:nizar] synonym: "type 4 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue [Term] id: UBERON:0018272 name: apex of paracone def: "The highest elevation of the paracone on a molariform tooth." [PHENOSCAPE:alex] is_a: UBERON:0003678 ! tooth apex relationship: part_of UBERON:0018288 ! paracone [Term] id: UBERON:0018273 name: caniniform region def: "The anterior region of the maxillary tooth row, if that tooth row contains teeth that are substantially over the premaxillary teeth (see Laurin and Reisz 1995)." [PHENOSCAPE:alex] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:2001978 ! maxillary tooth row [Term] id: UBERON:0018274 name: postcingulum of deciduous premolar 5 def: "A postcingulum found on deciduous premolar 5." [PHENOSCAPE:alex] synonym: "dP5 postcingulum" EXACT [] is_a: UBERON:0018290 ! postcingulum relationship: part_of UBERON:0018375 ! deciduous premolar 5 [Term] id: UBERON:0018275 name: posthypocrista of deciduous premolar 5 def: "A posthypocrista found on deciduous premolar 5." [PHENOSCAPE:alex] synonym: "dP5 posthypocrista" EXACT [] is_a: UBERON:0018292 ! posthypocrista relationship: part_of UBERON:0018375 ! deciduous premolar 5 [Term] id: UBERON:0018276 name: egg tooth def: "A protuberence or true tooth that is used during hatching to break the eggshell." [PHENOSCAPE:alex] xref: Wikipedia:Egg_tooth is_a: UBERON:0003913 ! tooth-like structure relationship: never_in_taxon NCBITaxon:9347 [Term] id: UBERON:0018277 name: calcareous egg tooth def: "Tooth used to break the eggshell, that is shed soon after hatching. In lepidosaurs, a true tooth that is shed soon after hatching." [PHENOSCAPE:alex] is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0018276 ! egg tooth property_value: taxon_notes "in lepidosaurs, a true tooth that is shed soon after hatching" xsd:string [Term] id: UBERON:0018278 name: epidermal egg tooth def: "Epidermal outgrowth that facilitates breaking of the eggshell in archosaurs and monotremes." [PHENOSCAPE:alex] is_a: UBERON:0018276 ! egg tooth relationship: part_of UBERON:0001003 ! skin epidermis relationship: present_in_taxon NCBITaxon:8492 relationship: present_in_taxon NCBITaxon:9255 property_value: taxon_notes "found in Archosaurs and monotreames" xsd:string [Term] id: UBERON:0018279 name: hypoconid def: "The labial most of three cusps on the talonoid (posterior) end of lower molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] is_a: UBERON:0006844 ! cusp of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018280 name: obsolete lingual cusp of tooth is_obsolete: true replaced_by: UBERON:0016929 [Term] id: UBERON:0018281 name: lower deciduous premolar 5 def: "Fifth premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] synonym: "dp5" RELATED OMO:0003000 [] is_a: UBERON:0017272 ! lower primary premolar tooth is_a: UBERON:0018375 ! deciduous premolar 5 [Term] id: UBERON:0018282 name: lower molar 3 def: "Third molar (counting anteroposteriorly) in the lower jaw." [PHENOSCAPE:alex] synonym: "lower wisdom tooth" RELATED [] synonym: "wisdom tooth" RELATED [PHENOSCAPE:alex] xref: Wikipedia:Wisdom_tooth is_a: UBERON:0003667 ! lower jaw molar is_a: UBERON:0018377 ! molar tooth 3 [Term] id: UBERON:0018283 name: lower pharyngobranchial toothplate def: "Pharyngeal toothplate of the lower jaw region; typically associated with ceratobranchial 5 element." [PHENOSCAPE:alex] synonym: "lower pharyngeal toothplate" EXACT [PHENOSCAPE:alex] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: editor_note "need to add relationship: UBERON:'pharyngeal tooth plate' needs relationship part_of 'splanchnocranium'" xsd:string [Term] id: UBERON:0018284 name: lower premolar 1 def: "First premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0018294 ! premolar 1 [Term] id: UBERON:0018285 name: lower premolar 2 def: "Second premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0018640 ! premolar 2 [Term] id: UBERON:0018286 name: molar 1 posteroloph def: "Posteroloph found on the first molar tooth." [PHENOSCAPE:alex] synonym: "M1 posteroloph" EXACT [1] is_a: UBERON:0018291 ! posteroloph relationship: part_of UBERON:0018376 ! molar tooth 1 [Term] id: UBERON:0018287 name: premolar 1 hypoconoid def: "Hypoconid found on the first premolar tooth." [PHENOSCAPE:alex] synonym: "p1 hypoconoid" EXACT [] is_a: UBERON:0018279 ! hypoconid relationship: part_of UBERON:0018294 ! premolar 1 [Term] id: UBERON:0018288 name: paracone def: "The anterior cusp along the labial margin seen in the molar or premolar teeth of mammals. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] is_a: UBERON:0006844 ! cusp of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018289 name: paracristid def: "A crest running along the labial margin of molarifomr teeth of mammals. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018290 name: postcingulum def: "A shelf like ridge on the posterior (distal) outside edge of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018291 name: posteroloph def: "A shelf like ridge on the outside of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018292 name: posthypocrista def: "A crest on the hypoconid of molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018293 name: precingulum def: "A shelf like ridge on the proximal (mesial) outside edge of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018294 name: premolar 1 def: "First premolar (counting anteroposteriorly) in the jaw." [PHENOSCAPE:alex] synonym: "first premolar tooth" EXACT [] xref: SCTID:422368002 is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0018295 name: preprotocrista def: "An enamel ridge joining the protocone and the paracone on the occlusal surface of a maxillary molar." [http://www.oxfordreference.com/view/10.1093/oi/authority.20110803100343456, PHENOSCAPE:curators] is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018296 name: replacement tooth def: "Tooth (often obscured from view) in a 'waiting' position that will replace an existing tooth (i.e. a tooth that is well visible in the jaw)." [PHENOSCAPE:Nizar] is_a: UBERON:0001091 ! calcareous tooth property_value: editor_note "additional feedback required. Should this be classified as a primary tooth?" xsd:string [Term] id: UBERON:0018297 name: resorption pit def: "A pit formed in an existing functional tooth, causing resorption of the surrounding dentine and periodontal tissues. (modified from LeBlanc and Reisz 2013, see figures 8, 10 for more details)." [PHENOSCAPE:curators] is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001708 ! jaw skeleton [Term] id: UBERON:0018298 name: stylocone def: "Cusp found on a platform that is buccaal and mesial to the meta and paracones. Modified from Kermack 1967. Molar evolution in Mesozoic mammals." [PHENOSCAPE:Alex] is_a: UBERON:0006844 ! cusp of tooth relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018299 name: mandibular symphyseal tooth def: "Tooth of the lower jaw that is adjacent to the mandibular symphysis." [PHENOSCAPE:curators] synonym: "lower jaw symphyseal tooth" EXACT [] synonym: "symphyseal tooth" BROAD [] is_a: UBERON:0003268 ! tooth of lower jaw relationship: part_of UBERON:0018542 ! mandibular symphyseal region [Term] id: UBERON:0018300 name: upper canine 1 def: "First canine (counting anteroposteriorly) in the upper jaw." [PHENOSCAPE:Alex] synonym: "UC1" EXACT OMO:0003000 [] synonym: "upper canine UC1" EXACT [] is_a: UBERON:0018621 ! upper canine tooth [Term] id: UBERON:0018301 name: upper deciduous premolar 5 def: "Fifth premolar (counting anteroposteriorly ) in the upper jaw." [PHENOSCAPE:Alex] synonym: "dP5" RELATED OMO:0003000 [] is_a: UBERON:0017271 ! upper primary premolar tooth is_a: UBERON:0018375 ! deciduous premolar 5 [Term] id: UBERON:0018302 name: upper molar 1 def: "First molar (counting anteroposteriorly) in the upper jaw." [PHENOSCAPE:Alex] is_a: UBERON:0003666 ! upper jaw molar is_a: UBERON:0018376 ! molar tooth 1 [Term] id: UBERON:0018303 name: adrenal tissue def: "Tissue that is part of some adrenal gland." [PHENOSCAPE:Alex] synonym: "adrenal gland tissue" EXACT [ncithesaurus:Adrenal_Gland_Tissue] xref: NCIT:C32051 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002369 ! adrenal gland property_value: editor_note "TODO - describe typology of adrenal gland tissue used in this ontology" xsd:string [Term] id: UBERON:0018304 name: post-axial region of pectoral appendage def: "Anatomical region lying to the posteiror or ventral side of the metapterygial axis." [PHENOSCAPE:Nizar] synonym: "post-axial region" BROAD [] is_a: UBERON:0010538 ! paired limb/fin segment relationship: part_of UBERON:0004710 ! pectoral appendage [Term] id: UBERON:0018305 name: bicipital surface def: "Region of the humerus associated with the biceps attachment areas." [PHENOSCAPE:Nizar] is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0018306 name: obsolete bulge def: "OBSOLETE expanded and swollen region of a surface that is otherwise relatively flat" [PHENOSCAPE:Nizar] comment: Term is redundant with UBERON:0010188 'protuberance' . subset: upper_level is_obsolete: true replaced_by: UBERON:0010188 [Term] id: UBERON:0018307 name: keel def: "Ridge shaped projection, similar to the keel of a boat." [PHENOSCAPE:Nizar] subset: upper_level is_a: UBERON:0004529 ! anatomical projection property_value: editor_note "Candidate for obsoletion" xsd:string [Term] id: UBERON:0018308 name: caudal melanophore spot def: "Distinct colored area on the caudal region of an organism, similar in shape to a spot, i.e. circular." [PHENOSCAPE:Nizar] synonym: "caudal spot" BROAD [] is_a: UBERON:2002283 ! melanophore spot [Term] id: UBERON:0018309 name: central figure of scute def: "Anatomical structure consisting of a pattern of ridges on an osteoderm." [PHENOSCAPE:curators] synonym: "central figure" EXACT [] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0008201 ! scute property_value: editor_note "TODO: review definition" xsd:string [Term] id: UBERON:0018310 name: cephalic dermal scale def: "A dermal scale that is found in the head region." [PHENOSCAPE:Alex] synonym: "cephalic scale" BROAD [] is_a: UBERON:0007380 ! dermal scale is_a: UBERON:3000972 ! head external integument structure [Term] id: UBERON:0018311 name: obsolete cervical rib def: "Rib attached to the cervical vertebrae." [PHENOSCAPE:Alex] is_obsolete: true replaced_by: UBERON:0018144 [Term] id: UBERON:0018312 name: cheek scale def: "A scale part of the cheek scale row." [PHENOSCAPE:Alex] is_a: UBERON:0002542 ! scale relationship: part_of UBERON:0018313 ! cheek scale row [Term] id: UBERON:0018313 name: cheek scale row def: "A row of scales foudn in the cheek region of the head of an organism." [PHENOSCAPE:Alex] is_a: UBERON:4300006 ! scale row relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0018314 name: choanal groove def: "Grooves on the palatine bone which denote the passage of the choana or internal naris." [PHENOSCAPE:Alex] is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0001682 ! palatine bone property_value: taxon_notes "found primarily in lepidosaurs" xsd:string [Term] id: UBERON:0018315 name: clasper plate def: "Pelvic clasper organs that have been modified into a flattened structure." [PHENOSCAPE:Alex] is_a: UBERON:0010518 ! pelvic fin clasper property_value: editor_note "currently created as a subtype of clasper, but it's not clear when modifications are sufficient to create a new class[cjm]" xsd:string [Term] id: UBERON:0018316 name: cuboid facet of calcaneum def: "Facet on the anterior surface of the calcaneus (as called calcaneum) for the articulation of the cuboid bone." [PHENOSCAPE:Alex] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:0018317 name: dorsal osteoderm def: "Osteoderm found on the dorsal surface of an organisms." [PHENOSCAPE:Alex] is_a: UBERON:0008201 ! scute relationship: part_of UBERON:0001137 ! dorsum [Term] id: UBERON:0018318 name: entocarotid fossa def: "A depression on the lateral surface of the braincase posterior to the Vidian canal (Conrad 2008)." [PHENOSCAPE:Alex] is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0004746 ! prootic bone [Term] id: UBERON:0018319 name: extramural oviduct def: "Section of the oviduct external to the uterine wall." [PHENOSCAPE:Alex] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000993 ! oviduct [Term] id: UBERON:0018320 name: flexor sesamoid def: "A sesamoid bone located near or in the flexor musculature of a joint." [PHENOSCAPE:alex] is_a: UBERON:0001479 ! sesamoid bone [Term] id: UBERON:0018321 name: foramen for glossopharyngeal nerve def: "Foramen that allows the passge of the glossopharyngeal nerve (cranial nerve IX)." [PHENOSCAPE:alex] is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0018322 name: fourth phalanx def: "Fourth most proximal phalanx in manual or pedal digits." [PHENOSCAPE:alex] is_a: UBERON:0003221 ! phalanx relationship: never_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018323 name: hyoid articular area def: "Area on the otic capsule for the articulation of the hyoid." [PHENOSCAPE:alex] is_a: UBERON:0004905 ! articulation relationship: part_of UBERON:0004637 ! otic capsule [Term] id: UBERON:0018324 name: hypochordal radial def: "Caudal fin radial element located ventral to the notochord." [PHENOSCAPE:Wasila] is_a: UBERON:0018325 ! caudal fin radial element [Term] id: UBERON:0018325 name: caudal fin radial element def: "Radial element that is part of the caudal fin." [PHENOSCAPE:curators] is_a: UBERON:2105225 ! median fin radial element relationship: part_of UBERON:4000167 ! caudal fin skeleton [Term] id: UBERON:0018326 name: ilioischiadic foramen def: "Situated just caudal to the acetabulum, the foramen is bound dorsally by the illium and ventrally by the ischium. The foramen transmitts the ischiadic nerves and vessels (Baumel et al. 1993)." [PHENOSCAPE:alex] is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:0018327 name: obsolete incisive process of premaxilla is_obsolete: true replaced_by: UBERON:0017249 [Term] id: UBERON:0018328 name: incisura fossa def: "The condyloid fossa on the cranial aspect of the Atlas my be perforated (foramen fossa) or have an open dorsal notch (Incisura fossa) in which the apex of the dens rides. (From Baumel et al. 1993)." [PHENOSCAPE:alex] is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0001092 ! vertebral bone 1 [Term] id: UBERON:0018329 name: interpterygoid region def: "The region on the palate corresponding to the location of the pterygoid bone, if present and between the palatine bones and the parasphenoid if not." [PHENOSCAPE:alex] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0012072 ! palatal part of dermatocranium property_value: editor_note "propose changing palate bone to palate bone series[PHENOSCAPE:ad]" xsd:string [Term] id: UBERON:0018330 name: interpterygoid vacuity def: "Open space between on the palate between the pteryogoid bone and the parasphenoid." [PHENOSCAPE:alex] is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0012072 ! palatal part of dermatocranium [Term] id: UBERON:0018331 name: intraramal joint def: "A joint in the lower jaw that enhances kinesis and for swallowing prey. Allows enhanced mobility and intraramal bending to increase gape." [PHENOSCAPE:alex] is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] id: UBERON:0018332 name: jugal bar def: "Elongate bar consisting of fused quadratojugal and jugal and connecting the maxilla to the quadrate." [PHENOSCAPE:Nizar] synonym: "angulus tomialis" EXACT [DOI:10.1371/journal.pone.0026350] is_a: UBERON:0005913 ! zone of bone organ [Term] id: UBERON:0018333 name: labial cartilage def: "Distinct cartilage around the jaws of elasmobranchs." [PHENOSCAPE:Nizar] is_a: UBERON:0003933 ! cranial cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] id: UBERON:0018334 name: lateral condyle of quadrate def: "Condyle on the lateral side of the quadrate." [PHENOSCAPE:Nizar] is_a: UBERON:0009979 ! condyle relationship: part_of UBERON:0006597 ! quadrate bone [Term] id: UBERON:0018335 name: lateral dorsal aorta canal def: "One of the branches of the dorsal aorta, after it enters the aortic canal." [PHENOSCAPE:Nizar] is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0005805 ! dorsal aorta [Term] id: UBERON:0018336 name: maxillary shank def: "The triangular shaped posterior fold at the angle of the mouth. From Chakrabarty 2006." [PHENOSCAPE:alex] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0018337 name: medial condyle of quadrate def: "The medialmost condyle on the distal region of the quadrate, in contact with the pterygoid." [PHENOSCAPE:alex] is_a: UBERON:0009979 ! condyle relationship: part_of UBERON:0006597 ! quadrate bone [Term] id: UBERON:0018338 name: medial cotyla def: "The medialmost of the cotyla of the lower jaw, for articulation with the cranium." [PHENOSCAPE:alex] is_a: UBERON:4200050 ! cotyla relationship: part_of UBERON:0003278 ! skeleton of lower jaw property_value: editor_note "According to Uberon mandible only denotes the dentary of mammals. THis is incorrect[PHENOSCAPE:ad]" xsd:string [Term] id: UBERON:0018339 name: metotic fissure def: "An embryonic fissure between the otic capsule and the arches which develop into the occipital bones. The fissure may persist into adulthood. It is also referred to as the 'lateral otic fissure' The metotic fissure opens into the vestibular fontanelle, if the fontanelle is present. (Johanson et al. (2003)). Otherwise it opens to the metotic foramen." [http://palaeos.com/vertebrates/glossary/glossaryM.html, PHENOSCAPE:alex] is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0004637 ! otic capsule [Term] id: UBERON:0018340 name: midbody melanophore spot def: "Distinct colored area on the midbody region of an organism, similar in shape to a spot, i.e. circular." [PHENOSCAPE:alex] synonym: "midbody spot" EXACT [] is_a: UBERON:2002283 ! melanophore spot [Term] id: UBERON:0018341 name: nasal process of premaxilla def: "A bony projection of the premaxilla that extends cadually and separates the nasal bones." [PHENOSCAPE:alex] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla property_value: taxon_notes "Most often documented in reptiles." xsd:string [Term] id: UBERON:0018342 name: nuchal hump def: "Dorsal swelling on the head. Found in cichlid fish. Often only in males and during breeding season, but not exclusively so." [PHENOSCAPE:Wasila] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0018343 name: oviduct mucosal fold def: "The wall of the fallopian tube includes an elaborately folded mucosa (endosalpinx) surrounded by a muscularis (myosalpinx). The mucosa is lined by a ciliated columnar epithelium with secretory cells, and is folded out into the lumen so that an ovum in the lumen will always be close to the cilia for transport to the uterus." [http://www.siumed.edu/~dking2/erg/oviduct.htm, PHENOSCAPE:alex] synonym: "endosalpinx" EXACT [PHENOSCAPE:alex] synonym: "mucosal fold of fallopian tube" RELATED [FMA:18537] synonym: "mucosal fold of oviduct" RELATED [FMA:18537] xref: FMA:18537 is_a: UBERON:0019042 ! reproductive system mucosa relationship: part_of UBERON:0000993 ! oviduct [Term] id: UBERON:0018344 name: parastyle def: "An anterior cusp on the stylar shelf of the tooth." [PHENOSCAPE:alex] is_a: UBERON:0006844 ! cusp of tooth relationship: part_of UBERON:0018345 ! stylar shelf [Term] id: UBERON:0018345 name: stylar shelf def: "The stylar shelf is an an expansion of the cingulum; it often bears small cusps (each with its own name...)." [http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure, PHENOSCAPE:curators] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0013164 ! molariform tooth [Term] id: UBERON:0018346 name: parietal notch def: "A pronounced notch or cavity in the lateral face of the parietal." [PHENOSCAPE:alex] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000210 ! tetrapod parietal bone [Term] id: UBERON:0018347 name: pars canalicularis of petrosal is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0018348 ! petrosal bone [Term] id: UBERON:0018348 name: petrosal bone is_a: UBERON:0004766 ! cranial bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 property_value: curator_notes "distinct from UBERON:0001694 petrous part of temporal bone; [PMID:19438763]" xsd:string [Term] id: UBERON:0018349 name: pharyngeal apophysis def: "Ventral process on the neurocranium for the articulation of upper pharyngeal bones. It is variably composed of the parasphenoid, basioccipital, and prootic depending on the species. From: Greenwood, PH (1978). A review of the pharyngeal hypophysis and its significance in the classification of African cichlid fishes. Bull. Br. Mus. Nat. Hist. (Zool.) 33: 297-323." [PHENOSCAPE:Wasila] synonym: "neurocranium apophysis" EXACT [PHENOSCAPE:Wasila] is_a: UBERON:0006770 ! apophysis relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0018351 name: precerebral fontanelle def: "The lack of chondrification of the anterior wall of the cranial cavity in front of the pineal foramen.....(Hanken and Hall)." [PHENOSCAPE:Alex] is_a: UBERON:3000051 ! braincase and otic capsule opening [Term] id: UBERON:0018352 name: prismatic cartilage def: "Cartilage arranged into tesserae, blocks of calcified cartilage that fit together as tiles on a floor form a mosaic. Found only in chondrichthyans. Reference: A. Peter Klimley. 2013. The Biology of Sharks and Rays. University of Chicago Press." [PHENOSCAPE:Wasila] synonym: "prismatic calcified tissue" EXACT [PHENOSCAPE:Wasila] is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0018353 name: quadrate condyle def: "The convex articular surface on the qudrate, part of the craniomandibular joint." [PHENOSCAPE:Alex] is_a: UBERON:0009979 ! condyle relationship: part_of UBERON:0006597 ! quadrate bone relationship: part_of UBERON:0011171 ! joint connecting upper and lower jaws [Term] id: UBERON:0018354 name: recessus vena jugularis def: "As defined here, this refers to a depression on the lateral surface of the braincase posterior to the Vidian canal as opposed to the carotid fossa...(Conrad 2008)." [PHENOSCAPE:Alex] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton [Term] id: UBERON:0018355 name: rictal bristle def: "Rictal bristles project from the beak of many insect-eating birds, including flycatchers, nightjars and even the American Robin. They are believed to provide protection for the bird's eyes as it consumes its wriggly prey. The bristles may also provide tactile feedback, like the whiskers on a dog or cat. from http://www.birds.cornell.edu/AllAboutBirds/studying/feathers/feathers/document_view." [PHENOSCAPE:Alex] is_a: UBERON:0000022 ! feather relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0018356 name: rostral entotympanic element def: "An entotympanic that arises in forward part of tympanic floor. It may be intimately fused witA cartilage of tube during development(MacPhee (1981: 62)) in contrast to a caudal entotympanic arising in the rear tympanic floor. From O'Leary et al. 2012." [PHENOSCAPE:Alex] is_a: UBERON:0013190 ! entotympanic bone [Term] id: UBERON:0018357 name: sensory pore synonym: "sensory canal pore" EXACT [PHENOSCAPE:Wasila] is_a: UBERON:0008915 ! pore relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001032 ! sensory system [Term] id: UBERON:0018358 name: spina externa def: "A median bony point projecting from the anterior and ventral margin of the sternum of a bird. From http://www.merriam-webster.com/dictionary/spina%20externa." [PHENOSCAPE:Alex] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0018359 name: subolfactory process def: "The ventral portion of the frontals which forms part of the lateral wall of the braincase. Modified from Lee and Caldwell 1998." [PHENOSCAPE:Alex] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton [Term] id: UBERON:0018360 name: suborbital foramen def: "Foramen located below the orbit and forming a passageway for nerves (eg fifth cranial nerve)." [PHENOSCAPE:Nizar] is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0018361 name: suborbital shelf def: "On the neurocranium, a horizontal plate arising on the ventral junction of the orbital wall and basal plate on each side which extends from the nasal capsule to the otic capsule; it forms the floor of the orbit." [PHENOSCAPE:Wasila] comment: Definition from: LJV Compagno. 2002. Sharks of the World Volume 2; FAO Species Catalogue for Fishery Purposes No. 1 is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001703 ! neurocranium property_value: taxon_notes "A well-developed suborbital shelf is apparently primitive for shark-like fishes but is variably telescoped, reduced or lost in many squalomorph sharks and a few galeomorphs." xsd:string [Term] id: UBERON:0018362 name: supracondylar tubercle def: "Anatomical projection on the distal region of the femur or humerus and close to the condyles." [PHENOSCAPE:Nizar] comment: found on femur or humerus is_a: UBERON:0017163 ! skin bony tubercle relationship: part_of UBERON:0011583 ! stylopodial skeleton [Term] id: UBERON:0018363 name: obsolete supracoracoid nerve foramen def: "Opening for the supracoracoid nerve in the supracoracoid." [PHENOSCAPE:Nizar] is_obsolete: true replaced_by: UBERON:3000778 [Term] id: UBERON:0018364 name: suprameatal foramen def: "Foramen in the temporal bone, adjacent to the base of the zygomatic process." [PHENOSCAPE:Nizar] is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0018365 name: supratemporal process def: "Process of the parietal." [PHENOSCAPE:Nizar] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000210 ! tetrapod parietal bone [Term] id: UBERON:0018366 name: supratendinal bridge def: "Ossified bridge over a tendon; Particularly, the bridge over the extensor canal at the distal end of the tibiotarsus of certain birds. The presence of the bridge and the position of the canal opening relative to the condyles may have phylogenetic significance. Ericson (1997). http://palaeos.com/vertebrates/glossary/glossarySq.html." [PHENOSCAPE:Nizar] is_a: UBERON:0001474 ! bone element [Term] id: UBERON:0018367 name: processus ventralis of thoracic vertebra def: "The crest is present on the ventral side of the bodies of the thoracic vertebra (modified from Baumel et al. 1993)." [PHENOSCAPE:Alex] synonym: "hypapophysis, crista ventralis corporis, crista ventralis, processus latus" EXACT [PHENOSCAPE:Alex] synonym: "processus ventralis" EXACT [] xref: NOID:1 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002347 ! thoracic vertebra property_value: taxon_notes "found in some birds" xsd:string [Term] id: UBERON:0018368 name: processus ventrolateralis of thoracic vertebra def: "Ventrolaerally oriented, paired projections atttached to the ventrolateral border of the body of certain thoracic vertebra; the ventrolateral crest flank the crista ventralis on each side. From Baumel et al. 1993." [PHENOSCAPE:Alex] synonym: "crista ventrolateralis, processus inferolateralis" EXACT [PHENOSCAPE:Alex] synonym: "processus ventrolateralis" EXACT [] xref: NOID:1 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002347 ! thoracic vertebra property_value: taxon_notes "found in some birds" xsd:string [Term] id: UBERON:0018369 name: upper lateral line def: "Dorsal sensory canal line in fish, dorsal to ventral lateral lane." [PHENOSCAPE:Nizar] is_a: UBERON:0010202 ! lateral line property_value: editor_note "consider merging with UBERON:0003095 ! dorsal lateral line" xsd:string [Term] id: UBERON:0018370 name: ventral lateral line def: "Ventral sensory canal line in fish, ventral to dorsal lateral lane." [PHENOSCAPE:Wasila] is_a: UBERON:0010202 ! lateral line [Term] id: UBERON:0018371 name: ventral supracondylar tubercle def: "Tubercle on the distal humerus for the origin of the Lig. collaterale ventral of the elbow joint. Modified from Baumel et al. 1993." [PHENOSCAPE:Alex, PHENOSCAPE:Nizar] is_a: UBERON:4200177 ! supracondyle tubercle [Term] id: UBERON:0018372 name: dorsal supracondylar tubercle def: "Tubercle on the dorsal border of the distal humerus, a short distance from the dorsal epicondyle, for the origin of the m extensor carpe radialis modifeid from Baumel et al. 1993." [PHENOSCAPE:Alex, PHENOSCAPE:Nizar] is_a: UBERON:4200177 ! supracondyle tubercle [Term] id: UBERON:0018373 name: vidian canal def: "Canal for the vidian nerve." [PHENOSCAPE:Nizar] synonym: "canalis pterygoidei" RELATED [Wikipedia:Pterygoid_canal] synonym: "canalis pterygoideus" RELATED [Wikipedia:Pterygoid_canal] synonym: "pterygoid canal" EXACT [FMA:54756] xref: FMA:54756 xref: Wikipedia:Pterygoid_canal is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0010389 ! pterygoid bone [Term] id: UBERON:0018374 name: sallet def: "A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 ." [ISBN:9780387714691, PHENOSCAPE:Alex] is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea relationship: present_in_taxon NCBITaxon:35033 {source="ISBN:9780387714691"} relationship: present_in_taxon NCBITaxon:8561 {source="ISBN:9780387714691"} [Term] id: UBERON:0018375 name: deciduous premolar 5 synonym: "deciduous premolar 5" EXACT [] synonym: "primary premolar 5 tooth" EXACT [] is_a: UBERON:0017269 ! primary premolar tooth is_a: UBERON:0018646 ! premolar tooth 5 [Term] id: UBERON:0018376 name: molar tooth 1 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 1." [UBERON:cjm] synonym: "first molar tooth" EXACT [] synonym: "molar 1" EXACT [] synonym: "molar 1 tooth" EXACT [] xref: FMA:321614 xref: SCTID:422372003 is_a: UBERON:0003655 ! molar tooth [Term] id: UBERON:0018377 name: molar tooth 3 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 3." [UBERON:cjm] synonym: "molar 3" EXACT [] synonym: "molar 3 tooth" EXACT [] synonym: "third molar tooth" EXACT [] synonym: "wisdom tooth" RELATED HUMAN_PREFERRED [NCBITaxon:9606] xref: FMA:321612 xref: MESH:D008964 xref: NCIT:C60732 xref: SCTID:181222005 xref: Wikipedia:Wisdom_tooth is_a: UBERON:0003655 ! molar tooth property_value: taxon_notes "A wisdom tooth is in humans any of the usually four third molars, including mandibular third molar and maxillary third molar. Wisdom teeth usually appear between the ages of 17 and 25. Most adults have four wisdom teeth, but it is possible to have morebin which case they are called supernumerary teethbor fewerba condition called hypodontia. Wisdom teeth commonly affect other teeth as they develop, becoming impacted or 'coming in sideways'. They are often extracted when this occurs." xsd:string {source="Wikipedia:Wisdom_tooth"} [Term] id: UBERON:0018378 name: crustacean larval stage def: "The larval stage of a crustacean, the stages of which are separated my moults. Typically this goes through a nauplius - zoea - post-larval cycle." [Wikipedia:Crustacean_larvae] is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0018379 name: metacestode def: "The larval (metacestode) stage of the tapeworm Echinococcus multilocularis." [BTO:0000859] xref: BTO:0000859 is_a: UBERON:0002548 {source="BTO"} ! larva [Term] id: UBERON:0018382 name: second instar larva def: "Instar: a stage in the life of an arthropod (as an insect) between two successive molts." [BTO:0001224] xref: BTO:0001224 xref: FBbt:00005338 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002548 {source="BTO"} ! larva [Term] id: UBERON:0018385 name: metacercaria def: "A tailless encysted late larva of a trematode parasite that is usually the form which is infective for the definitive host." [BTO:0003927] xref: BTO:0003927 is_a: UBERON:0002548 {source="BTO"} ! larva [Term] id: UBERON:0018387 name: obsolete cestode def: "OBSOLETE Any of a class (Cestoda) of bilaterally symmetrical flatworms parasitic especially in the intestines of vertebrates." [BTO:0005278] comment: Obsoleted as a class representing a taxon does not belong in Uberon. synonym: "tapeworm" RELATED [BTO:0005278] is_obsolete: true replaced_by: NCBITaxon:6199 [Term] id: UBERON:0018388 name: cercaria def: "A usually tadpole-shaped larval trematode worm that develops in a molluscan host from a redia." [BTO:0005513] xref: BTO:0005513 xref: MESH:D058487 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002548 {source="BTO"} ! larva [Term] id: UBERON:0018389 name: interoceptor def: "A sensory receptor that detects stimulus within the body. Examples of stimuli that would be detected by interoceptors include blood pressure and blood oxygen level." [Wikipedia:Interoceptor] synonym: "enteroceptor" EXACT [FMA:84656] synonym: "visceroceptor" EXACT [FMA:84656] xref: FMA:84656 xref: Wikipedia:Interoceptor is_a: UBERON:0012451 {source="FMA"} ! sensory receptor relationship: part_of UBERON:0036255 ! interoceptive system [Term] id: UBERON:0018391 name: chemoreceptor def: "A sensory receptor that detects chemical stimulus within the body." [http://orcid.org/0000-0002-6601-2165] xref: FMA:85604 is_a: UBERON:0018389 {source="FMA"} ! interoceptor property_value: external_definition "Cells specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." xsd:string {source="MESH:A08.800.550.700.120"} [Term] id: UBERON:0018392 name: arterial baroreceptor def: "Arterial baroreceptors are stretch receptors that are stimulated by distortion of the arterial wall when pressure changes." [Wikipedia:Baroreceptor#Arterial_baroreceptors] synonym: "arterial stretch receptor" RELATED [MESH:A08.800.050.800.900.700] is_a: UBERON:0004019 ! baroreceptor [Term] id: UBERON:0018393 name: low-pressure baroreceptor def: "Found in large systemic veins, in pulmonary vessels, and in the walls of the right atrium and ventricles of the heart (the atrial volume receptors)." [Wikipedia:Baroreceptor#Low-pressure_baroreceptors] is_a: UBERON:0004019 ! baroreceptor [Term] id: UBERON:0018394 name: vein baroreceptor def: "A baroreceptor that located_in a vein." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018395 name: cardiac baroreceptor def: "A baroreceptor that located_in a heart." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018396 name: pulmonary baroreceptor def: "A baroreceptor that located_in a pulmonary vascular system." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018397 name: posterior superior alveolar artery def: "The posterior superior alveolar artery (posterior dental artery) is given off from the maxillary, frequently in conjunction with the infraorbital just as the trunk of the vessel is passing into the pterygopalatine fossa." [Wikipedia:Posterior_superior_alveolar_artery] subset: human_reference_atlas synonym: "superior posterior alveolar artery" EXACT [FMA:49757] xref: FMA:49757 xref: Wikipedia:Posterior_superior_alveolar_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018398 name: superior alveolar nerve synonym: "superior dental nerve" EXACT [FMA:52930] xref: FMA:52930 xref: SCTID:280235006 xref: SCTID:280239000 is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0018401 name: posterior superior alveolar nerve def: "The posterior superior alveolar branches (posterior superior dental branches) arise from the trunk of the maxillary nerve just before it enters the infraorbital groove; they are generally two in number, but sometimes arise by a single trunk. They descend on the tuberosity of the maxilla and give off several twigs to the gums and neighboring parts of the mucous membrane of the cheek. They then enter the posterior alveolar canals on the infratemporal surface of the maxilla, and, passing from behind forward in the substance of the bone, communicate with the middle superior alveolar nerve, and give off branches to the lining membrane of the maxillary sinus and gingival and dental branches to each molar tooth from a superior dental plexus; these branches enter the apical foramina at the roots of the teeth. The posterior superior alveolar nerve innervates the second and third maxillary molars, and two of the three roots of the maxillary first molar (all but the mesiobuccal root). When giving a Posterior Superior Alveolar nerve block, it will anesthetize the mesialbuccal root of the maxillary first molar approximately 72% of the time." [Wikipedia:Posterior_superior_alveolar_nerve] synonym: "posterior superior alveolar branches" RELATED [Wikipedia:Posterior_superior_alveolar_nerve] synonym: "posterior superior dental nerve" EXACT [FMA:52931] xref: FMA:52931 xref: Wikipedia:Posterior_superior_alveolar_nerve is_a: UBERON:0018398 {source="FMA"} ! superior alveolar nerve [Term] id: UBERON:0018405 name: inferior alveolar nerve synonym: "inferior dental nerve" EXACT [FMA:53243] xref: FMA:53243 xref: SCTID:280261005 is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0018406 name: mental nerve def: "Mental nerve is a general somatic afferent (sensory) nerve which provides sensation to the anterior aspects of the chin and lower lip as well as the buccal gingivae of the mandibular anterior teeth and the premolars. It is a branch of the posterior trunk of the inferior alveolar nerve, which is itself a branch of the mandibular division of the trigeminal nerve (CN V). The nerve emerges at the mental foramen in the mandibula, and divides beneath the Depressor anguli oris muscle into three branches: one descends to the skin of the chin. two ascend to the skin and mucous membrane of the lower lip. These branches communicate freely with the facial nerve." [Wikipedia:Mental_nerve] xref: FMA:53250 xref: SCTID:280138001 xref: Wikipedia:Mental_nerve is_a: UBERON:0001027 ! sensory nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0018407 name: infra-orbital foramen of maxilla def: "A foramen on the exterior of the maxilla that is continuous with the infra-orbital canal and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] synonym: "foramen infraorbitale" EXACT OMO:0003011 [Wikipedia:Infraorbital_foramen] synonym: "infra-orbital foramen" EXACT [FMA:57718] synonym: "infraorbital foramen" EXACT [MFMO:0000054] xref: FMA:57718 xref: MFMO:0000054 xref: Wikipedia:Infraorbital_foramen is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0018408 name: infra-orbital nerve def: "A branch of the maxillary nerve that enters the infraorbital canal and innervates the lower eyelid, upper lip, the nasal vestibule, the upper incisors, canines, premolars, upper gums, lower eyelid and conjunctiva, and part of the nose." [http://medical-dictionary.thefreedictionary.com/infra-orbital+nerve, Wikipedia:Infraorbital_nerve] synonym: "infra-orbital nerve" RELATED [Wikipedia:Infraorbital_nerve] synonym: "infraorbital nerve" EXACT [FMA:52978] synonym: "infraorbital portion" RELATED [Wikipedia:Infraorbital_nerve] xref: FMA:52978 xref: SCTID:280360008 xref: Wikipedia:Infraorbital_nerve is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0022298 ! lower eyelid nerve [Term] id: UBERON:0018409 name: infra-orbital groove of maxilla def: "A groove on the interior of the maxilla that is continuous with the infra-orbital canal and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] synonym: "infra-orbital groove" EXACT [Wikipedia:Infraorbital_groove] synonym: "infraorbital groove" EXACT [Wikipedia:Infraorbital_groove] synonym: "sulcus infraorbitalis" RELATED [Wikipedia:Infraorbital_groove] xref: FMA:57746 xref: Wikipedia:Infraorbital_groove is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0018410 name: lacteal def: "A lymphatic capillary that absorbs dietary fats in the villi of the small intestine." [Wikipedia:Lacteals] synonym: "lymphatic capillary of small intestine" EXACT [http://orcid.org/0000-0003-4183-8865] synonym: "small intestine lymphatic capillary" EXACT [http://orcid.org/0000-0003-4183-8865] xref: FMA:68443 xref: SCTID:282414002 xref: Wikipedia:Lacteals is_a: UBERON:0006842 ! lymphatic capillary relationship: part_of UBERON:0001213 ! intestinal villus [Term] id: UBERON:0018411 name: ligament of hip joint def: "A skeletal ligament that is part of a hip joint." [OBOL:automatic] synonym: "hip joint ligament" EXACT [FMA:42868] xref: FMA:42868 xref: SCTID:182435001 is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001486 ! hip joint [Term] id: UBERON:0018412 name: vidian nerve def: "A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland." [http://medical-dictionary.thefreedictionary.com/vidian+nerve, Wikipedia:Nerve_of_pterygoid_canal] subset: human_reference_atlas synonym: "nerve of pterygoid canal" EXACT [FMA:67584] synonym: "nerve of the pterygoid canal" RELATED [Wikipedia:Nerve_of_pterygoid_canal] synonym: "pterygoid canal nerve" EXACT [FMA:67584] synonym: "vidian nerve" EXACT [FMA:67584] synonym: "vidian nerve" RELATED [Wikipedia:Nerve_of_pterygoid_canal] xref: FMA:67584 xref: SCTID:280273005 xref: Wikipedia:Nerve_of_pterygoid_canal is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 property_value: external_ontology_notes "FMA classifies as an anatomical junction" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0018413 name: facial nerve canal def: "A Z-shaped canal running through the temporal bone from the internal acoustic meatus to the stylomastoid foramen. It is located within the middle ear region, according to its shape it is divided into three main segments: the labyrinthine, the tympanic, and the mastoidal segment ." [Wikipedia:Facial_canal] synonym: "canalis nervi facialis" EXACT OMO:0003011 [FMA:54952, FMA:TA] synonym: "facial canal" EXACT [FMA:54952] synonym: "fallopian canal" RELATED [FMA:54952] xref: FMA:54952 xref: Wikipedia:Facial_canal is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0018415 name: ethmoid foramen def: "An bone foramen in the ethmoid bone." [http://orcid.org/0000-0002-6601-2165] comment: Taxon nodes: In humans, refers to anterior or posterior ethmoid foramina synonym: "ethmoid foramina" RELATED OMO:0003004 [] synonym: "ethmoidal foramen" EXACT [] synonym: "ethmoidal foramina" RELATED OMO:0003004 [] synonym: "foramina ethmoidalia" EXACT OMO:0003011 [] xref: Wikipedia:Ethmoidal_foramina is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001679 ! ethmoid bone property_value: taxon_notes "There are usually two Foramina ethmoidalia present on each side in the dog. Sometimes one is situated rostral to the other, but often it is dorsal. They are not homologous with the Foramen ethmoidale anterius and Foramen ethmoidale posterius of man. Therefore they are not listed separately.[NOMINA ANATOMICA VETERINARIA (2005)]" xsd:string [Term] id: UBERON:0018424 name: petrosal foramen def: "A foramen of skull that is part of a petrosal bone." [OBOL:automatic] synonym: "Foramen petrosum" EXACT [FMA:53158] xref: FMA:53158 is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0018348 ! petrosal bone [Term] id: UBERON:0018508 name: foramen of nasal bone def: "A vascular foramen opening on the outer surface of a nasal bone." [http://medical-dictionary.thefreedictionary.com/nasal+foramina] synonym: "foramen of nasal bone" RELATED [] synonym: "foramina nasalia" EXACT OMO:0003011 [Wikipedia:Nasal_foramina] synonym: "nasal foramen" EXACT [] synonym: "nasal foramina" RELATED OMO:0003004 [FMA:57653] xref: FMA:57653 xref: Wikipedia:Nasal_foramina is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001681 ! nasal bone [Term] id: UBERON:0018529 name: female inguinal ring def: "An inguinal ring that is part of a female reproductive system." [OBOL:automatic] xref: EMAPA:19172 xref: MA:0003250 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006674 ! inguinal ring relationship: part_of UBERON:0004353 ! female inguinal canal [Term] id: UBERON:0018530 name: male inguinal ring def: "An inguinal ring that is part of a male reproductive system." [OBOL:automatic] xref: EMAPA:29307 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006674 ! inguinal ring relationship: part_of UBERON:0004354 ! male inguinal canal [Term] id: UBERON:0018531 name: female superficial inguinal ring def: "A deep inguinal ring that is part of a female reproductive system." [OBOL:automatic] synonym: "female external inguinal ring" EXACT [MA:0003252] xref: EMAPA:19174 xref: MA:0003252 is_a: UBERON:0013721 ! deep inguinal ring is_a: UBERON:0018529 ! female inguinal ring [Term] id: UBERON:0018532 name: female deep inguinal ring def: "A deep inguinal ring that is part of a male reproductive system." [OBOL:automatic] synonym: "female internal inguinal ring" EXACT [MA:0003251] xref: EMAPA:19173 xref: MA:0003251 is_a: UBERON:0013721 ! deep inguinal ring is_a: UBERON:0018530 ! male inguinal ring [Term] id: UBERON:0018533 name: crus of penis or clitoris def: "The continuation of each corpus cavernosum of the penis or clitoris, diverging posteriorly to be attached to the pubic arch." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006609 ! corpus cavernosum [Term] id: UBERON:0018534 name: obsolete spinal cord reticular formation comment: Obsoleted as NN retricts this to brainstem structures synonym: "formatio reticularis spinalis" EXACT [FMA:TA] synonym: "reticular formation of spinal cord" EXACT [FMA:77455] synonym: "spinal reticular formation" EXACT [FMA:77455] is_obsolete: true consider: FMA:77455 consider: SCTID:369268003 [Term] id: UBERON:0018535 name: forelimb feather def: "A feather that is part of a forelimb." [http://orcid.org/0000-0002-6601-2165] synonym: "feather of forelimb" EXACT [] is_a: UBERON:0000022 ! feather relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0018536 name: wing feather def: "A feather that is part of a forelimb wing." [http://orcid.org/0000-0002-6601-2165] synonym: "feather of forelimb wing" EXACT [] is_a: UBERON:0018535 ! forelimb feather relationship: part_of UBERON:0000024 ! forelimb wing [Term] id: UBERON:0018537 name: tail feather def: "A feather that is part of a tail." [http://orcid.org/0000-0002-6601-2165] synonym: "feather of tail" EXACT [] is_a: UBERON:0000022 ! feather relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:0018538 name: breast feather def: "A feather that is part of a the upper ventral region of an animal's torso." [http://orcid.org/0000-0002-6601-2165] synonym: "feather of breast" EXACT [] synonym: "feather of mammary region" EXACT [] synonym: "feather of upper chest" EXACT [] synonym: "feather of upper ventral region" EXACT [] is_a: UBERON:0000022 ! feather relationship: part_of UBERON:0000310 ! breast [Term] id: UBERON:0018539 name: dorsal feather def: "A feather that is part of a the dorsal region of an animal's torso." [http://orcid.org/0000-0002-6601-2165] synonym: "feather of back" EXACT [] synonym: "feather of dorsum" EXACT [] is_a: UBERON:0000022 ! feather relationship: part_of UBERON:0001137 ! dorsum [Term] id: UBERON:0018540 name: breast feather tract def: "A feather tract that is part of a the upper ventral region of an animal's torso." [http://orcid.org/0000-0002-6601-2165] synonym: "feather tract of breast" EXACT [] synonym: "feather tract of mammary region" EXACT [] synonym: "feather tract of upper chest" EXACT [] synonym: "feather tract of upper ventral region" EXACT [] synonym: "row of feathers on breast" EXACT [] synonym: "row of feathers on mammary region" EXACT [] synonym: "row of feathers on upper chest" EXACT [] synonym: "row of feathers on upper ventral region" EXACT [] is_a: UBERON:0013512 ! row of feathers relationship: part_of UBERON:0000310 ! breast [Term] id: UBERON:0018542 name: mandibular symphyseal region def: "The region of the mandible on or near the midline (near the mandiblular symphysis)." [MFMO:0000147] synonym: "symphyseal region" BROAD [MFMO:0000147] xref: MFMO:0000147 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004742 ! dentary [Term] id: UBERON:0018543 name: lumen of intestine def: "The anatomical space within the intestine." [http://orcid.org/0000-0002-6601-2165] synonym: "gut lumen" RELATED [ZFA:0005807] synonym: "intestinal lumen" EXACT [FMA:14586] synonym: "intestine lumen" EXACT [ZFA:0005807] xref: FMA:14586 xref: TADS:0000495 xref: WBbt:0005791 xref: ZFA:0005807 is_a: UBERON:0000464 ! anatomical space property_value: editor_note "see notes in inclusivity in class 'intestine'" xsd:string [Term] id: UBERON:0018544 name: trigeminal nerve muscle def: "Muscle innervated by the trigeminal nerve (Cranial Nerve V)." [MFMO:0000072] synonym: "muscle innervated by the trigeminal nerve" EXACT [] synonym: "muscles innervated by the trigeminal nerve" EXACT OMO:0003004 [MFMO:0000072] xref: MFMO:0000072 is_a: UBERON:0001630 ! muscle organ relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 [Term] id: UBERON:0018545 name: nucleus of the bulbocavernosus def: "A cluster of motoneurons located in the anterior gray column of lumbar segments 5 and 6 of the spinal cord in the rat. Functionally it belongs to the somatic motoneuron pools of the subcortical motor system ( Swanson-2004 )." [NeuroNames:2700] synonym: "nucleus of the bulbocavernosus" RELATED [NeuroNames:2700] synonym: "nucleus of the bulbospongiosus" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "spinal nucleus of the bulbocavernosus" RELATED [https://www.msu.edu/~bjlab/snb.html] xref: neuronames:2700 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord relationship: present_in_taxon NCBITaxon:10114 property_value: development_notes "Before birth, male and female rats have the muscles and the SNB motoneurons innervating them, but both die in females in the first week of life[https://www.msu.edu/~bjlab/snb.html]" xsd:string [Term] id: UBERON:0018549 name: ventral wall of dorsal aorta def: "Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [ZFA:0005028, ZFA:curator] synonym: "DA roof" RELATED [ZFA:0005028] synonym: "DA-PCV joint" EXACT [ZFA:0005028] synonym: "DA-PCV joint" NARROW [ZFA:0005028] synonym: "dorsal aorta - posterior cardinal vein joint" EXACT [ZFIN:ZDB-PUB-061227-29] synonym: "DP joint" RELATED [ZFA:0005028] xref: EFO:0003699 xref: TAO:0005028 xref: ZFA:0005028 is_a: UBERON:0000479 {source="ZFA"} ! tissue relationship: part_of UBERON:0002390 {source="ZFA"} ! hematopoietic system relationship: part_of UBERON:0005805 {source="ZFA"} ! dorsal aorta [Term] id: UBERON:0018550 name: secondary incisor tooth synonym: "permanent incisor" EXACT [] synonym: "permanent incisor tooth" EXACT [FMA:84201] xref: FMA:84201 xref: SCTID:304571003 is_a: UBERON:0001098 ! incisor tooth is_a: UBERON:0007775 ! secondary tooth [Term] id: UBERON:0018551 name: incisor tooth 1 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 1." [https://orcid.org/0000-0003-2699-3066] subset: pheno_slim synonym: "central incisor" EXACT HUMAN_PREFERRED [] synonym: "first incisor tooth" EXACT [] xref: SCTID:422364000 is_a: UBERON:0001098 ! incisor tooth [Term] id: UBERON:0018552 name: incisor tooth 2 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 2." [https://orcid.org/0000-0003-2699-3066] subset: pheno_slim synonym: "lateral incisor" EXACT HUMAN_PREFERRED [] synonym: "second incisor tooth" EXACT [] xref: SCTID:422366003 is_a: UBERON:0001098 ! incisor tooth [Term] id: UBERON:0018553 name: primary central incisor tooth synonym: "primary central incisor" EXACT [] synonym: "primary first incisor tooth" EXACT [] is_a: UBERON:0016476 ! primary incisor tooth [Term] id: UBERON:0018554 name: primary lateral incisor tooth synonym: "primary lateral incisor" EXACT [] synonym: "primary second incisor tooth" EXACT [] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0016476 ! primary incisor tooth [Term] id: UBERON:0018561 name: upper secondary canine tooth def: "A secondary canine tooth that is part of a upper jaw region." [OBOL:automatic] synonym: "C" RELATED OMO:0003000 [] synonym: "maxillary secondary canine tooth" EXACT [FMA:55714] synonym: "permanent upper canine tooth" RELATED [FMA:55714] synonym: "upper permanent canine tooth" EXACT [FMA:55714] xref: FMA:55714 is_a: UBERON:0018584 ! secondary canine tooth is_a: UBERON:0018613 ! secondary upper tooth is_a: UBERON:0018621 ! upper canine tooth [Term] id: UBERON:0018562 name: lower secondary canine tooth def: "A secondary canine tooth that is part of a lower jaw region." [OBOL:automatic] synonym: "c" RELATED OMO:0003000 [] synonym: "lower permanent canine tooth" EXACT [FMA:55715] synonym: "mandibular secondary canine tooth" EXACT [FMA:55715] synonym: "permanent lower canine tooth" RELATED [FMA:55715] xref: FMA:55715 is_a: UBERON:0018584 ! secondary canine tooth is_a: UBERON:0018614 ! permanent lower tooth is_a: UBERON:0018622 ! lower canine tooth [Term] id: UBERON:0018568 name: lower central secondary incisor tooth def: "A lower jaw incisor that is in_the_central_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "i1" RELATED OMO:0003000 [] synonym: "lower central permanent incisor tooth" EXACT [FMA:55723] synonym: "mandibular central permanent incisor" EXACT [] synonym: "mandibular central secondary incisor tooth" EXACT [FMA:55723] synonym: "secondary lower first incisor tooth" EXACT [] xref: FMA:55723 is_a: UBERON:0018601 ! lower central incisor tooth is_a: UBERON:0018623 ! lower secondary incisor tooth [Term] id: UBERON:0018570 name: lower lateral secondary incisor tooth def: "A lower jaw incisor that is in_the_lateral_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "i2" RELATED OMO:0003000 [] synonym: "lower lateral permanent incisor tooth" EXACT [FMA:55725] synonym: "mandibular lateral permanent incisor" EXACT [] synonym: "mandibular lateral secondary incisor tooth" EXACT [FMA:55725] synonym: "secondary lower second incisor tooth" EXACT [] xref: FMA:55725 is_a: UBERON:0018602 ! lower lateral incisor tooth is_a: UBERON:0018623 ! lower secondary incisor tooth [Term] id: UBERON:0018571 name: upper first secondary premolar tooth synonym: "maxillary first secondary premolar tooth" EXACT [FMA:55801] synonym: "P1" RELATED OMO:0003000 [] synonym: "permanent first upper premolar tooth" RELATED [FMA:55801] synonym: "secondary first upper premolar tooth" RELATED [FMA:55801] synonym: "upper first permanent premolar tooth" EXACT [FMA:55801] xref: FMA:55801 is_a: UBERON:0016452 ! upper secondary premolar tooth is_a: UBERON:0018294 ! premolar 1 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018572 name: upper second secondary premolar tooth synonym: "maxillary second secondary premolar tooth" EXACT [FMA:55802] synonym: "P2" RELATED OMO:0003000 [] synonym: "permanent second upper premolar tooth" RELATED [FMA:55802] synonym: "secondary second upper premolar tooth" RELATED [FMA:55802] synonym: "upper second permanent premolar tooth" EXACT [FMA:55802] xref: FMA:55802 is_a: UBERON:0016452 ! upper secondary premolar tooth is_a: UBERON:0018640 ! premolar 2 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018573 name: lower first secondary premolar tooth synonym: "lower first permanent premolar tooth" EXACT [FMA:55803] synonym: "mandibular first secondary premolar tooth" EXACT [FMA:55803] synonym: "p1" RELATED OMO:0003000 [] synonym: "permanent first lower premolar tooth" RELATED [FMA:55803] synonym: "secondary first lower premolar tooth" RELATED [FMA:55803] xref: FMA:55803 is_a: UBERON:0016453 ! lower secondary premolar tooth is_a: UBERON:0018284 ! lower premolar 1 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018574 name: lower second secondary premolar tooth synonym: "lower second permanent premolar tooth" EXACT [FMA:55804] synonym: "mandibular second secondary premolar tooth" EXACT [FMA:55804] synonym: "p2" RELATED OMO:0003000 [] synonym: "permanent second lower premolar tooth" RELATED [FMA:55804] synonym: "secondary second lower premolar tooth" RELATED [FMA:55804] xref: FMA:55804 is_a: UBERON:0016453 ! lower secondary premolar tooth is_a: UBERON:0018285 ! lower premolar 2 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018575 name: upper first secondary molar tooth synonym: "M1" RELATED OMO:0003000 [] synonym: "maxillary first secondary molar tooth" EXACT [FMA:55811] synonym: "upper first permanent molar tooth" EXACT [FMA:55811] xref: FMA:55811 is_a: UBERON:0013619 ! upper secondary molar tooth is_a: UBERON:0018302 ! upper molar 1 is_a: UBERON:0018608 ! permanent molar tooth 1 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018576 name: upper second secondary molar tooth synonym: "M2" RELATED OMO:0003000 [] synonym: "maxillary second secondary molar tooth" EXACT [FMA:55812] synonym: "upper second permanent tooth" EXACT [FMA:55812] xref: FMA:55812 is_a: UBERON:0013619 ! upper secondary molar tooth is_a: UBERON:0018607 ! permanent molar tooth 2 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018577 name: upper third secondary molar tooth synonym: "dens serotinus (upper)" EXACT OMO:0003011 [FMA:55813, FMA:TA] synonym: "M3" RELATED OMO:0003000 [] synonym: "maxillary third secondary molar tooth" EXACT [FMA:55813] synonym: "permanent third upper molar tooth" RELATED [FMA:55813] synonym: "secondary third upper molar tooth" RELATED [FMA:55813] synonym: "upper third permanent molar tooth" EXACT [FMA:55813] synonym: "upper wisdom tooth" EXACT [FMA:55813] xref: FMA:55813 is_a: UBERON:0013619 ! upper secondary molar tooth is_a: UBERON:0018377 ! molar tooth 3 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018578 name: lower first secondary molar tooth synonym: "lower first permanent molar tooth" EXACT [FMA:55814] synonym: "m1" RELATED OMO:0003000 [] synonym: "mandibular first secondary molar tooth" EXACT [FMA:55814] xref: FMA:55814 is_a: UBERON:0013621 ! lower secondary molar tooth is_a: UBERON:0018608 ! permanent molar tooth 1 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018579 name: lower second secondary molar tooth synonym: "lower second permanent molar tooth" EXACT [FMA:55815] synonym: "lower secondary molar 2" EXACT [] synonym: "m2" RELATED OMO:0003000 [] synonym: "mandibular second secondary molar tooth" EXACT [FMA:55815] xref: FMA:55815 is_a: UBERON:0013621 ! lower secondary molar tooth is_a: UBERON:0018607 ! permanent molar tooth 2 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018580 name: lower third secondary molar tooth synonym: "lower secondary molar 3" EXACT [] synonym: "lower third permanent molar tooth" EXACT [FMA:55817] synonym: "lower wisdom tooth" EXACT [FMA:55817] synonym: "m3" RELATED OMO:0003000 [] synonym: "mandibular third secondary molar tooth" EXACT [FMA:55817] synonym: "secondary third lower molar tooth" RELATED [FMA:55817] xref: FMA:55817 is_a: UBERON:0013621 ! lower secondary molar tooth is_a: UBERON:0018282 ! lower molar 3 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018583 name: primary canine tooth synonym: "deciduous canine tooth" EXACT [FMA:84202] synonym: "primary tooth C" EXACT [FMA:84202] synonym: "temporary canine tooth" EXACT [FMA:84202] xref: FMA:84202 xref: SCTID:15819002 is_a: UBERON:0003674 ! cuspid is_a: UBERON:0007115 ! deciduous tooth [Term] id: UBERON:0018584 name: secondary canine tooth synonym: "permanent canine tooth" EXACT [FMA:84203] xref: FMA:84203 xref: SCTID:134340007 is_a: UBERON:0003674 ! cuspid is_a: UBERON:0007775 ! secondary tooth [Term] id: UBERON:0018588 name: upper first primary molar tooth synonym: "dM1" RELATED OMO:0003000 [] synonym: "upper first deciduous molar tooth" EXACT [FMA:84211] synonym: "upper primary tooth D" EXACT [FMA:84211] xref: FMA:84211 is_a: UBERON:0013617 ! upper primary molar tooth is_a: UBERON:0018302 ! upper molar 1 is_a: UBERON:0018644 ! deciduous molar tooth 1 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018589 name: lower first primary molar tooth synonym: "dm1" RELATED OMO:0003000 [] synonym: "lower first deciduous molar tooth" EXACT [FMA:84212] synonym: "lower primary molar 1" EXACT [] synonym: "lower primary tooth D" EXACT [FMA:84212] xref: FMA:84212 is_a: UBERON:0013620 ! lower primary molar tooth is_a: UBERON:0018644 ! deciduous molar tooth 1 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018591 name: upper primary incisor tooth def: "A primary incisor tooth that is part of a upper jaw region." [OBOL:automatic] synonym: "deciduous upper incisor tooth" RELATED [FMA:84214] synonym: "upper deciduous incisor tooth" EXACT [FMA:84214] xref: FMA:84214 is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0016476 ! primary incisor tooth is_a: UBERON:0018616 ! primary upper tooth [Term] id: UBERON:0018593 name: upper central primary incisor tooth def: "A upper primary canine tooth that is in_the_central_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "dI1" RELATED OMO:0003000 [] synonym: "primary upper first incisor tooth" EXACT [] synonym: "upper central deciduous incisor tooth" EXACT [FMA:84216] synonym: "upper primary tooth A" EXACT [FMA:84216] xref: FMA:84216 is_a: UBERON:0018553 ! primary central incisor tooth is_a: UBERON:0018591 ! upper primary incisor tooth is_a: UBERON:0018603 ! upper central incisor tooth [Term] id: UBERON:0018594 name: upper lateral primary incisor tooth def: "A upper primary canine tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "dI2" RELATED OMO:0003000 [] synonym: "primary upper second incisor tooth" EXACT [] synonym: "upper lateral deciduous incisor tooth" EXACT [FMA:84217] synonym: "upper primary tooth B" EXACT [FMA:84217] xref: FMA:84217 is_a: UBERON:0018554 ! primary lateral incisor tooth is_a: UBERON:0018591 ! upper primary incisor tooth is_a: UBERON:0018604 ! upper lateral incisor tooth [Term] id: UBERON:0018595 name: lower central primary incisor tooth def: "A lower primary incisor tooth that is in_the_central_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "deciduous lower central incisor tooth" RELATED [FMA:84218] synonym: "di1" RELATED OMO:0003000 [] synonym: "lower central deciduous incisor tooth" EXACT [FMA:84218] synonym: "lower primary tooth A" EXACT [FMA:84218] xref: FMA:84218 is_a: UBERON:0017748 ! lower primary incisor tooth is_a: UBERON:0018553 ! primary central incisor tooth is_a: UBERON:0018601 ! lower central incisor tooth [Term] id: UBERON:0018596 name: lower lateral primary incisor tooth def: "A lower primary incisor tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] subset: pheno_slim synonym: "deciduous lower lateral incisor tooth" RELATED [FMA:84219] synonym: "di2" RELATED OMO:0003000 [] synonym: "lower lateral deciduous incisor tooth" EXACT [FMA:84219] synonym: "lower primary tooth B" EXACT [FMA:84219] synonym: "mandibular lateral primary incisor" EXACT [] xref: FMA:84219 is_a: UBERON:0017748 ! lower primary incisor tooth is_a: UBERON:0018554 ! primary lateral incisor tooth is_a: UBERON:0018602 ! lower lateral incisor tooth [Term] id: UBERON:0018597 name: upper primary canine tooth def: "A primary canine tooth that is part of a upper jaw region." [OBOL:automatic] synonym: "dC" RELATED OMO:0003000 [] synonym: "deciduous upper canine tooth" RELATED [FMA:84228] synonym: "upper deciduous canine tooth" EXACT [FMA:84228] synonym: "upper primary tooth C" EXACT [FMA:84228] xref: FMA:84228 xref: SCTID:421810006 is_a: UBERON:0018583 ! primary canine tooth is_a: UBERON:0018616 ! primary upper tooth is_a: UBERON:0018621 ! upper canine tooth [Term] id: UBERON:0018598 name: lower primary canine tooth def: "A primary canine tooth that is part of a lower jaw region." [OBOL:automatic] synonym: "dc" RELATED OMO:0003000 [] synonym: "deciduous lower canine tooth" RELATED [FMA:84229] synonym: "lower deciduous canine tooth" EXACT [FMA:84229] synonym: "lower primary tooth C" EXACT [FMA:84229] synonym: "primary lower canine tooth" EXACT [] xref: FMA:84229 xref: SCTID:420326009 is_a: UBERON:0018583 ! primary canine tooth is_a: UBERON:0018617 ! primary lower tooth is_a: UBERON:0018622 ! lower canine tooth [Term] id: UBERON:0018599 name: upper second primary molar tooth synonym: "dM2" RELATED OMO:0003000 [] synonym: "upper primary tooth E" EXACT [FMA:84236] synonym: "upper second deciduous molar tooth" EXACT [FMA:84236] xref: FMA:84236 is_a: UBERON:0013617 ! upper primary molar tooth is_a: UBERON:0018643 ! deciduous molar tooth 2 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018600 name: lower second primary molar tooth synonym: "dm2" RELATED OMO:0003000 [] synonym: "lower primary tooth E" EXACT [FMA:84237] synonym: "lower second deciduous molar tooth" EXACT [FMA:84237] xref: FMA:84237 is_a: UBERON:0013620 ! lower primary molar tooth is_a: UBERON:0018643 ! deciduous molar tooth 2 property_value: editor_note "TODO - tooth numbering nomeculature to be aligned across species" xsd:string [Term] id: UBERON:0018601 name: lower central incisor tooth def: "An incisor tooth that is in_the_central_side_of a dentition and is part of a lower jaw region." [OBOL:automatic] subset: pheno_slim synonym: "lower central incisor" EXACT [] synonym: "lower first incisor tooth" EXACT [] synonym: "mandibular central incisor" EXACT [] xref: FMA:290182 is_a: UBERON:0003451 ! lower jaw incisor [Term] id: UBERON:0018602 name: lower lateral incisor tooth def: "An incisor tooth that is in_the_lateral_side_of a dentition and is part of a lower jaw region." [OBOL:automatic] subset: pheno_slim synonym: "lower lateral incisor" EXACT [] synonym: "lower second incisor tooth" EXACT [] synonym: "mandibular lateral incisor" EXACT [] xref: FMA:290197 is_a: UBERON:0003451 ! lower jaw incisor is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0018603 name: upper central incisor tooth def: "An incisor tooth that is in_the_central_side_of a dentition and is part of a upper jaw region." [OBOL:automatic] subset: pheno_slim synonym: "maxillary central incisor" EXACT [] synonym: "upper central incisor" EXACT [] synonym: "upper first incisor tooth" EXACT [] xref: FMA:290180 is_a: UBERON:0003450 ! upper jaw incisor [Term] id: UBERON:0018604 name: upper lateral incisor tooth def: "An incisor tooth that is in_the_lateral_side_of a dentition and is part of a upper jaw region." [OBOL:automatic] subset: pheno_slim synonym: "maxillary lateral incisor" EXACT [] synonym: "upper lateral incisor" EXACT [] synonym: "upper second incisor tooth" EXACT [] xref: FMA:290194 is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0018606 name: molar tooth 2 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 2." [UBERON:cjm] synonym: "molar 2" EXACT [] synonym: "molar 2 tooth" EXACT [] synonym: "second molar tooth" EXACT [] xref: FMA:321613 xref: SCTID:422374002 is_a: UBERON:0003655 ! molar tooth [Term] id: UBERON:0018607 name: permanent molar tooth 2 subset: pheno_slim synonym: "permanent second molar tooth" EXACT [] synonym: "second permanent molar" EXACT [] synonym: "second permanent molar tooth" EXACT [] synonym: "secondary second molar tooth" EXACT [] xref: SCTID:420479003 is_a: UBERON:0013618 ! secondary molar tooth is_a: UBERON:0018606 ! molar tooth 2 [Term] id: UBERON:0018608 name: permanent molar tooth 1 subset: pheno_slim synonym: "first permanent molar" EXACT [] synonym: "first permanent molar tooth" EXACT [] synonym: "permanent first molar tooth" EXACT [] xref: SCTID:304565009 is_a: UBERON:0013618 ! secondary molar tooth is_a: UBERON:0018376 ! molar tooth 1 [Term] id: UBERON:0018613 name: secondary upper tooth synonym: "permanent upper tooth" EXACT [] xref: SCTID:245564000 is_a: UBERON:0003267 ! tooth of upper jaw is_a: UBERON:0007775 ! secondary tooth [Term] id: UBERON:0018614 name: permanent lower tooth synonym: "secondary lower tooth" EXACT [] xref: SCTID:245588003 is_a: UBERON:0003268 ! tooth of lower jaw is_a: UBERON:0007775 ! secondary tooth [Term] id: UBERON:0018616 name: primary upper tooth synonym: "deciduous upper tooth" EXACT [] xref: SCTID:245613009 is_a: UBERON:0003267 ! tooth of upper jaw is_a: UBERON:0007115 ! deciduous tooth [Term] id: UBERON:0018617 name: primary lower tooth synonym: "deciduous lower tooth" EXACT [] xref: SCTID:245628009 is_a: UBERON:0003268 ! tooth of lower jaw is_a: UBERON:0007115 ! deciduous tooth [Term] id: UBERON:0018621 name: upper canine tooth synonym: "maxillary canine tooth" EXACT [] synonym: "upper canine" EXACT [] synonym: "upper cuspid" EXACT [] is_a: UBERON:0003267 ! tooth of upper jaw is_a: UBERON:0003674 ! cuspid [Term] id: UBERON:0018622 name: lower canine tooth synonym: "lower canine" EXACT [] synonym: "lower cuspid" EXACT [] synonym: "mandibular canine tooth" EXACT [] is_a: UBERON:0003268 ! tooth of lower jaw is_a: UBERON:0003674 ! cuspid [Term] id: UBERON:0018623 name: lower secondary incisor tooth synonym: "lower permanent incisor tooth" EXACT [FMA:55713] synonym: "mandibular secondary incisor tooth" EXACT [FMA:55713] synonym: "permanent lower incisor tooth" RELATED [FMA:55713] xref: FMA:55713 is_a: UBERON:0003451 ! lower jaw incisor is_a: UBERON:0018550 ! secondary incisor tooth is_a: UBERON:0018614 ! permanent lower tooth [Term] id: UBERON:0018632 name: obsolete upper primary canine tooth is_obsolete: true [Term] id: UBERON:0018640 name: premolar 2 synonym: "second premolar tooth" EXACT [] xref: SCTID:422370006 is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0018643 name: deciduous molar tooth 2 synonym: "deciduous second molar tooth" EXACT [] xref: SCTID:422595006 is_a: UBERON:0013616 ! primary molar tooth is_a: UBERON:0018606 ! molar tooth 2 [Term] id: UBERON:0018644 name: deciduous molar tooth 1 synonym: "deciduous first molar tooth" EXACT [] synonym: "deciduous molar 1" EXACT [] synonym: "first temporarary molar" EXACT [] xref: SCTID:423890001 is_a: UBERON:0013616 ! primary molar tooth is_a: UBERON:0018376 ! molar tooth 1 [Term] id: UBERON:0018645 name: incisor region of dentition def: "The subdivision of the dentition that consists entire of incisor teeth." [http://orcid.org/0000-0002-6601-2165] synonym: "set of incisors" RELATED [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003672 ! dentition [Term] id: UBERON:0018646 name: premolar tooth 5 def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 5." [UBERON:cjm] synonym: "premolar 5" EXACT [] is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0018647 name: premolar tooth 4 def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 4." [UBERON:cjm] synonym: "premolar 4" EXACT [] is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0018648 name: upper premolar 4 comment: Often called the carnassial tooth, this tooth acts with its counterpart in the lower jaw (the 1st molar in that case) to slice food in a scissoring action.[MURDOCH:2142] synonym: "carnassial tooth" RELATED [MURDOCH:2142] is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0018647 ! premolar tooth 4 [Term] id: UBERON:0018649 name: cardiac muscle tissue of ventricle synonym: "ventricular cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventricular heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventricular muscle" RELATED [http://orcid.org/0000-0002-6601-2165] xref: FMA:83450 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0001083 ! myocardium of ventricle [Term] id: UBERON:0018650 name: annelid peristomium def: "The peristomium is the second body segment in an annelid worm's body in the anterior end. It is directly behind the prostomium and contains the mouth, tentacular cirri, and sometimes feeding palps, which may instead occur on the prostomium. If an eversible pharynx is present, it is contained in this segment as well, and can fill up to 20 segments when inverted, depending on the species." [Wikipedia:Peristomium] synonym: "peristomium" BROAD [Wikipedia:Peristomium] xref: Wikipedia:Peristomium is_a: UBERON:0000914 ! organismal segment [Term] id: UBERON:0018651 name: foramen lacerum def: "A triangular hole in the base of the skull located at the base of the medial pterygoid plate." [Wikipedia:Foramen_lacerum] xref: FMA:54809 xref: SCTID:369444009 xref: Wikipedia:Foramen_lacerum is_a: UBERON:0013685 {source="FMA"} ! foramen of skull property_value: terminology_notes "For comparative reasons this term can only be used for the opening between the Os temporale, Os basisphenoidale, and Os occipitale (formerly the Foramen lacerum orale of the pig and horse). That which was formerly called Foramen lacerum aborale is the Foramen jugulare [NOMINA ANATOMICA VETERINARIA (2005)]" xsd:string [Term] id: UBERON:0018652 name: maxillary recess def: "A hollow space in the skull of carnivores, which do not exhibit a maxillary sinus." [http://orcid.org/0000-0002-6601-2165] synonym: "recessus maxillaris" EXACT OMO:0003011 [] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003129 ! skull property_value: editor_note "consider adding grouping with maxillary sinus" xsd:string property_value: location_notes "Bounded medially by the Lamina orbitalis of the Os ethmoidale and laterally by the Maxilla and Os palatinum and in the dog also by the Os lacrimale[NOMINA ANATOMICA VETERINARIA (2005)]" xsd:string [Term] id: UBERON:0018653 name: anterior ethmoidal foramen def: "The anterior ethmoidal foramen, situated about the middle of the lateral margin of the olfactory groove, transmits the anterior ethmoidal vessels and the anterior ethmoidal nerve; the nerve runs in a groove along the lateral edge of the cribriform plate to the slit-like opening above mentioned." [Wikipedia:Anterior_ethmoidal_foramen] synonym: "foramina ethmoidalia anterius" EXACT OMO:0003011 [] xref: FMA:53135 xref: Wikipedia:Anterior_ethmoidal_foramen is_a: UBERON:0013685 {source="FMA"} ! foramen of skull [Term] id: UBERON:0018654 name: posterior ethmoidal foramen def: "The posterior ethmoidal foramen opens at the back part of this margin under cover of the projecting lamina of the sphenoid, and transmits the posterior ethmoidal vessels and nerve." [Wikipedia:Posterior_ethmoidal_foramen] synonym: "foramina ethmoidalia posterius" EXACT OMO:0003011 [] xref: FMA:53136 xref: Wikipedia:Posterior_ethmoidal_foramen is_a: UBERON:0013685 {source="FMA"} ! foramen of skull [Term] id: UBERON:0018655 name: pars endotympanica def: "This is present in the cat and forms the large medial part of the Bulla tympanica. It is not to be regarded as a part of the pars tympanica, which ossifies directly from connective tissue, whereas the Pars endotympanica is preformed in cartilage. The Septum bullae in the cat is formed by the Pars tympanica as well as by the Pars endotympanica(NOMINA ANATOMICA VETERINARIA (2005))." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0013190 ! entotympanic bone [Term] id: UBERON:0018656 name: puparium def: "A chitin-based cuticular shell derived from the cuticle of the final larval instar that surrounds the pupal form of the organism." [Wikipedia:Pupa#Puparium] synonym: "puparia" RELATED OMO:0003004 [] xref: FBbt:00004987 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001001 {source="FBbt"} ! chitin-based cuticle is_a: UBERON:0018657 ! pupal case relationship: develops_from UBERON:0002548 ! larva [Term] id: UBERON:0018657 name: pupal case def: "Any acellular shell or covering that surrounds the pupal form of an insect." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0018663 name: recessus basilaris def: "An opening of the otic duct within the inner ear. The recessus basilaris can open to the saccule (in frogs) or the lagena (in salamanders and caecilians). The sensory epithelium of the recessus basilaris is the basilar papilla (or papilla basilaris). Reference: Lewis, E.R. and R.E. Lombard. 1988. The amphibian inner ear. Pp. 93-123 in Fritszch, B., et al. (eds.), The Evolution of the Amphibian Auditory System. Wiley & Sons. [curated by D. Blackburn]." [PHENOSCAPE:wd] synonym: "basilar papillar recess" EXACT [] is_a: UBERON:0000064 ! organ part relationship: never_in_taxon NCBITaxon:40674 relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0018664 name: neck of bone element def: "The neck region of a bone organ." [http://orcid.org/0000-0002-6601-2165] synonym: "bone neck" EXACT [] synonym: "neck of bone" EXACT [] is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005913 {notes="https://github.com/obophenotype/uberon/wiki/Hidden-GCIs"} ! zone of bone organ [Term] id: UBERON:0018667 name: neck of scapula synonym: "anatomical neck of scapula" EXACT [FMA:23254] synonym: "collum scapulae" EXACT [] synonym: "scapular neck" EXACT [FMA:23254] xref: FMA:23254 xref: SCTID:181915009 is_a: UBERON:0018664 ! neck of bone element relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:0018669 name: obsolete neck of humerus is_obsolete: true replaced_by: UBERON:4200172 [Term] id: UBERON:0018673 name: neck of fibula subset: human_reference_atlas synonym: "fibula neck" EXACT [FMA:35508] synonym: "fibular neck" EXACT [] xref: EMAPA:37891 {source="MA:th"} xref: FMA:35508 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element relationship: part_of UBERON:0001446 ! fibula relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018674 name: heart vasculature def: "An interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart." [ZFA:0005811, ZFA:CVS] synonym: "cardiac vasculature" EXACT [FMA:73747] xref: FMA:73747 xref: ZFA:0005811 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0018675 name: pelvic splanchnic nerve def: "A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut." [Wikipedia:Pelvic_splanchnic_nerves] subset: human_reference_atlas synonym: "nervi erigentes" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi pelvici splanchnici" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi splanchnici pelvici" RELATED [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nn erigentes" RELATED [Wikipedia:Pelvic_splanchnic_nerves] synonym: "pelvic splanchnic nerve" RELATED [Wikipedia:Pelvic_splanchnic_nerves] synonym: "pelvic splanchnic parasympathetic nerve" EXACT [EHDAA2:0001432] xref: EHDAA2:0001432 xref: EHDAA:5628 xref: FMA:16901 xref: SCTID:311223006 xref: Wikipedia:Pelvic_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve is_a: UBERON:0004293 ! parasympathetic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018676 name: renal nerve plexus def: "The renal plexus is formed by filaments from the celiac plexus, the aorticorenal ganglion, and the aortic plexus . It is joined also by the least splanchnic nerve. The nerves from these sources, fifteen or twenty in number, have a few ganglia developed upon them. They accompany the branches of the renal artery into the kidney; some filaments are distributed to the spermatic plexus and, on the right side, to the inferior vena cava." [Wikipedia:Renal_plexus] synonym: "plexus renalis" EXACT [FMA:TA] synonym: "renal plexus" EXACT [FMA:6636] xref: FMA:6636 xref: SCTID:280526000 xref: Wikipedia:Renal_plexus is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus [Term] id: UBERON:0018679 name: thoracic splanchnic nerve def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers." [Wikipedia:Thoracic_splanchnic_nerves] subset: human_reference_atlas xref: FMA:6280 xref: Wikipedia:Thoracic_splanchnic_nerves is_a: UBERON:0003715 ! splanchnic nerve is_a: UBERON:0003824 ! nerve of thoracic segment relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018680 name: greater splanchnic nerve comment: The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. subset: human_reference_atlas synonym: "greater thoracic splanchnic nerve" EXACT [FMA:6281] xref: FMA:6281 xref: SCTID:280503007 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018681 name: lesser splanchnic nerve comment: The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. subset: human_reference_atlas synonym: "lesser thoracic splanchnic nerve" EXACT [FMA:6282] xref: FMA:6282 xref: SCTID:280505000 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018683 name: lumbar splanchnic nerve def: "The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut." [Wikipedia:Lumbar_splanchnic_nerves] subset: human_reference_atlas synonym: "lumbar splanchnic nerve" RELATED [Wikipedia:Lumbar_splanchnic_nerves] xref: FMA:6287 xref: SCTID:280507008 xref: Wikipedia:Lumbar_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0018684 name: sacral splanchnic nerve def: "A splanchnic nerve that connects the inferior hypogastric plexus to the sympathetic trunk in the pelvis." [Wikipedia:Sacral_splanchnic_nerves] xref: FMA:6288 xref: Wikipedia:Sacral_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve [Term] id: UBERON:0018685 name: nursing stage def: "A mammalian developmental stage that covers the period from birth until weaning." [Bgee:AN] synonym: "suckling stage" EXACT [] xref: ChirDv:0000016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000260 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000032 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000138 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PpanDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000056 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0018687 name: glial limiting membrane def: "The meshwork of astrocytic foot processes (glial end feet) covered by a basal lamina adjacent to the inner pial surface of the central nervous system." [http://neurolex.org/wiki/Nlx_subcell_100209] synonym: "glia limitans" EXACT OMO:0003011 [Wikipedia:Glia_limitans] xref: NIF_Subcellular:nlx_subcell_100209 xref: Wikipedia:Glia_limitans is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0000120 ! blood brain barrier [Term] id: UBERON:0018688 name: hindlimb feather def: "A feather that is part of a hindlimb." [http://orcid.org/0000-0002-6601-2165] synonym: "feather of hindlimb" EXACT [] is_a: UBERON:0000022 ! feather relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0018689 name: crural feather def: "A feather that is part of a hindlimb zeugopod." [http://orcid.org/0000-0002-6601-2165] synonym: "tibial feather" EXACT [] is_a: UBERON:0018688 ! hindlimb feather relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0018690 name: feather covering of ventral part of tail synonym: "crissum feathers" RELATED [] synonym: "undertail covert" RELATED [] is_a: UBERON:0013512 ! row of feathers relationship: part_of UBERON:0018691 ! ventral side of post-anal tail [Term] id: UBERON:0018691 name: ventral side of post-anal tail is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0007812 ! post-anal tail relationship: part_of UBERON:0013235 ! ventrum [Term] id: UBERON:0018692 name: dorsal side of post-anal tail is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001137 ! dorsum relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0018707 name: bladder organ def: "A membranous sac in animals that serves as the receptacle of a liquid or contains gas." [BTO:0000123] synonym: "bladder" NARROW [BTO:0000123] xref: BTO:0000123 is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0009856 ! sac [Term] id: UBERON:0019042 name: reproductive system mucosa synonym: "genital mucosa" EXACT [BTO:0002439] xref: BTO:0002439 is_a: UBERON:0000344 ! mucosa is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0019143 name: intramuscular adipose tissue def: "Adipose tissue which is located throughout skeletal muscle and is responsible for the marbling seen in certain cuts of beef. In humans, excess accumulation of intramuscular fat is associated with insulin resistance and type 2 diabetes." [BTO:0004043] synonym: "intramuscular fat" RELATED [BTO:0004043] xref: BTO:0004043 is_a: UBERON:0001013 ! adipose tissue relationship: part_of UBERON:0014892 ! skeletal muscle organ, vertebrate [Term] id: UBERON:0019189 name: carotid artery endothelium synonym: "carotid endothelium" RELATED [BTO:0004626] synonym: "carotid epithelium" RELATED [] xref: BTO:0004626 is_a: UBERON:0001917 ! endothelium of artery relationship: part_of UBERON:0005396 ! carotid artery segment [Term] id: UBERON:0019190 name: mucous gland of lung synonym: "bronchial gland" EXACT [FMA:13119] synonym: "bronchial mucous gland" EXACT [FMA:13119] synonym: "peribronchial gland" EXACT [BTO:0004638] xref: BTO:0004638 xref: FMA:13119 xref: SCTID:88410004 is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0019196 name: iliac artery endothelium xref: BTO:0004661 is_a: UBERON:0001917 ! endothelium of artery relationship: part_of UBERON:0005609 ! iliac artery [Term] id: UBERON:0019197 name: dorsal nerve of penis def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the penis and innervates the the corpus cavernosum penis, the prepuce and the glans penis." [http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20penis, Wikipedia:Dorsal_nerve_of_the_penis] synonym: "dorsal nerve of penis" RELATED [Wikipedia:Dorsal_nerve_of_the_penis] synonym: "dorsal nerves of the penis" RELATED [Wikipedia:Dorsal_nerve_of_the_penis] synonym: "nervus dorsalis penis" EXACT OMO:0003011 [FMA:21869] synonym: "nervus dorsalis penis " EXACT OMO:0003011 [FMA:21869, FMA:TA] xref: FMA:21869 xref: SCTID:306800005 xref: Wikipedia:Dorsal_nerve_of_the_penis is_a: UBERON:0003444 ! pelvis nerve is_a: UBERON:0035649 ! nerve of penis relationship: part_of UBERON:0000989 {source="FMA"} ! penis [Term] id: UBERON:0019198 name: dorsal nerve of clitoris def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the clitoral shaft and innervates the the glans clitoris." [http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20clitoris, Wikipedia:Dorsal_nerve_of_clitoris] synonym: "dorsal nerve of the clitoris" RELATED [Wikipedia:Dorsal_nerve_of_clitoris] synonym: "nervus dorsalis clitoridis" EXACT [FMA:21870] xref: FMA:21870 xref: SCTID:367687005 xref: Wikipedia:Dorsal_nerve_of_clitoris is_a: UBERON:0003444 ! pelvis nerve is_a: UBERON:0035650 ! nerve of clitoris relationship: part_of UBERON:0002411 {source="FMA"} ! clitoris [Term] id: UBERON:0019199 name: lateral side of chest synonym: "side of chest" EXACT [] xref: SCTID:182332004 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001443 {source="FMA"} ! chest [Term] id: UBERON:0019200 name: skin of anterior chest def: "Zone of skin that is part of the anterior region of the chest." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "anterior chest skin" EXACT [FMA:10461] synonym: "skin of anterior part of thorax" EXACT [FMA:10461] synonym: "skin of ventral chest" EXACT [HP:0007542] synonym: "ventral chest skin" EXACT [HP:0007542] xref: FMA:10461 is_a: UBERON:0001868 ! skin of chest relationship: part_of UBERON:0016416 ! anterior chest [Term] id: UBERON:0019201 name: gemellus muscle def: "One of the two small muscular fasciculi, accessories to the tendon of the Obturator internus which is received into a groove between them." [Wikipedia:Inferior_gemellus_muscle, Wikipedia:Superior_gemellus_muscle] xref: EMAPA:36227 xref: FMA:22319 xref: SCTID:245021004 is_a: UBERON:0004252 {source="EMAPA"} ! hindlimb stylopod muscle [Term] id: UBERON:0019202 name: inferior gemellus muscle def: "Gemellus muscle that arises from the upper part of the tuberosity of the ischium, immediately below the groove for the Obturator internus tendon. It blends with the lower part of the tendon of the Obturator internus, and is inserted with it into the medial surface of the greater trochanter." [Wikipedia:Inferior_gemellus_muscle] subset: human_reference_atlas synonym: "gemellus inferior" EXACT [EMAPA:36228] synonym: "gemellus inferior" RELATED [Wikipedia:Inferior_gemellus_muscle] synonym: "gemellus inferior muscle" RELATED [Wikipedia:Inferior_gemellus_muscle] synonym: "inferior gemellus" EXACT [FMA:22320] synonym: "musculus gemellus inferior" EXACT OMO:0003011 [FMA:TA] xref: EMAPA:36228 xref: FMA:22320 xref: Wikipedia:Inferior_gemellus_muscle is_a: UBERON:0019201 ! gemellus muscle relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "Rarely absent in humans" xsd:string [Term] id: UBERON:0019203 name: superior gemellus muscle def: "The smaller of the two gemellus muscles that arises from the outer surface of the spine of the ischium, blends with the upper part of the tendon of the Obturator internus, and is inserted with it into the medial surface of the greater trochanter[WP]." [Wikipedia:Superior_gemellus_muscle] subset: human_reference_atlas synonym: "cemellus superior" RELATED [Wikipedia:Superior_gemellus_muscle] synonym: "gemellus superior" EXACT [EMAPA:36229] synonym: "gemellus superior" RELATED [Wikipedia:Superior_gemellus_muscle] synonym: "gemellus superior muscle" RELATED [Wikipedia:Superior_gemellus_muscle] synonym: "musculus gemellus superior" EXACT OMO:0003011 [FMA:TA] synonym: "superior cemellus" RELATED [Wikipedia:Superior_gemellus_muscle] synonym: "superior cemellus muscle" RELATED [Wikipedia:Superior_gemellus_muscle] synonym: "superior gemellus" EXACT [FMA:22318] synonym: "superior gemellus" RELATED [Wikipedia:Superior_gemellus_muscle] xref: EMAPA:36229 xref: FMA:22318 xref: SCTID:245022006 xref: Wikipedia:Superior_gemellus_muscle is_a: UBERON:0019201 ! gemellus muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019204 name: skin epithelium def: "Any region of epithelium that is part of a skin region." [http://orcid.org/0000-0002-6601-2165] xref: BTO:0004382 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0000014 ! zone of skin [Term] id: UBERON:0019206 name: tongue papilla epithelium xref: EMAPA:35869 xref: MA:0003178 is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0003357 ! epithelium of tongue relationship: part_of UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0019207 name: chorioretinal region def: "The part of the eye that consists of both the retina and the optic choroid." [http://orcid.org/0000-0002-6601-2165, UBERON:drseb] subset: pheno_slim synonym: "chorioretina" EXACT [] synonym: "choroid and retina" EXACT [] synonym: "retinachoroid" EXACT [] synonym: "retinachoroidal region" EXACT [] xref: SCTID:110701000 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0010230 ! eyeball of camera-type eye [Term] id: UBERON:0019208 name: anterior pole of lens def: "The central point on the anterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php] synonym: "polus anterior (lens)" EXACT [FMA:58897] synonym: "polus anterior lentis" EXACT OMO:0003011 [] xref: FMA:58897 xref: NCIT:C32103 xref: SCTID:302143002 is_a: UBERON:0019210 ! pole of lens [Term] id: UBERON:0019210 name: pole of lens def: "A central point or region on the anterior or posterior surface of the lens." [http://orcid.org/0000-0002-6601-2165] synonym: "lens pole" EXACT [] synonym: "lens zone" EXACT [FMA:58067] synonym: "zone of lens" RELATED [FMA:58067] xref: FMA:58067 xref: SCTID:280630009 is_a: UBERON:0034944 {source="FMA"} ! zone of organ relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0019211 name: supcapsular region of anterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0019208 ! anterior pole of lens [Term] id: UBERON:0019212 name: supcapsular region of posterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0016459 ! posterior pole of lens [Term] id: UBERON:0019221 name: digit 1 or 5 def: "Either of the outermost digits in a five-digit autopod, or their phylogenetic equivalent." [UBERON:cjm] synonym: "lateral digit" RELATED HUMAN_PREFERRED [] synonym: "outer digit" RELATED HUMAN_PREFERRED [] synonym: "outermost digit" RELATED HUMAN_PREFERRED [] is_a: UBERON:0002544 ! digit property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd:anyURI [Term] id: UBERON:0019222 name: digit 2, 3 or 4 def: "Any of the three medial digits in a five-digit autopod, or their phylogenetic equivalent." [UBERON:cjm] subset: pheno_slim synonym: "medial digit" RELATED HUMAN_PREFERRED [] synonym: "mesoaxial digit" RELATED HUMAN_PREFERRED [] is_a: UBERON:0002544 ! digit property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd:anyURI [Term] id: UBERON:0019231 name: manual digit 1 or 5 synonym: "lateral finger" RELATED HUMAN_PREFERRED [] synonym: "lateral manual digit" RELATED HUMAN_PREFERRED [] synonym: "outer manual digit" RELATED HUMAN_PREFERRED [] synonym: "outermost manual digit" RELATED HUMAN_PREFERRED [] is_a: UBERON:0002389 ! manual digit is_a: UBERON:0019221 ! digit 1 or 5 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd:anyURI [Term] id: UBERON:0019232 name: manual digit 2, 3 or 4 subset: pheno_slim synonym: "medial manual digit" RELATED HUMAN_PREFERRED [] synonym: "mesoaxial manual digit" RELATED HUMAN_PREFERRED [] synonym: "mesoxaxial finger" RELATED HUMAN_PREFERRED [] is_a: UBERON:0002389 ! manual digit is_a: UBERON:0019222 ! digit 2, 3 or 4 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd:anyURI [Term] id: UBERON:0019241 name: pedal digit 1 or 5 synonym: "lateral pedal digit" RELATED HUMAN_PREFERRED [] synonym: "lateral toe" RELATED HUMAN_PREFERRED [] synonym: "outer pedal digit" RELATED HUMAN_PREFERRED [] synonym: "outermost pedal digit" RELATED HUMAN_PREFERRED [] is_a: UBERON:0001466 ! pedal digit is_a: UBERON:0019221 ! digit 1 or 5 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd:anyURI [Term] id: UBERON:0019242 name: pedal digit 2, 3 or 4 subset: pheno_slim synonym: "medial pedal digit" RELATED HUMAN_PREFERRED [] synonym: "mesoaxial pedal digit" RELATED HUMAN_PREFERRED [] synonym: "mesoxaxial ftoe" RELATED HUMAN_PREFERRED [] is_a: UBERON:0001466 ! pedal digit is_a: UBERON:0019222 ! digit 2, 3 or 4 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd:anyURI [Term] id: UBERON:0019243 name: skin crease synonym: "skin groove" RELATED [] xref: SCTID:280385004 is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0000014 ! zone of skin [Term] id: UBERON:0019246 name: palmar skin crease subset: pheno_slim synonym: "skin crease of palmar part of manus" EXACT [] xref: SCTID:244159001 is_a: UBERON:0019243 ! skin crease is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0008878 ! palmar part of manus [Term] id: UBERON:0019247 name: plantar skin crease synonym: "skin crease of plantar part of pes" EXACT [] xref: SCTID:244192007 is_a: UBERON:0019243 ! skin crease is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0008338 ! plantar part of pes [Term] id: UBERON:0019248 name: early embryo xref: EMAPA:36032 is_a: UBERON:0000922 ! embryo [Term] id: UBERON:0019249 name: 2-cell stage embryo synonym: "2-cell embryo" RELATED [EMAPA:16036] synonym: "two-cell embryo" RELATED [EMAPA:16036] xref: ChirDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: EMAPA:16036 is_a: UBERON:0019248 {source="EMAPA"} ! early embryo [Term] id: UBERON:0019250 name: 4-8 cell stage embryo synonym: "4-8 cell embryo" RELATED [EMAPA:16037] synonym: "four-to-eight cell embryo" RELATED [EMAPA:16037] xref: EMAPA:16037 is_a: UBERON:0019248 ! early embryo [Term] id: UBERON:0019251 name: 4-cell stage embryo synonym: "4-cell embryo" RELATED [EMAPA:31864] synonym: "four-cell embryo" RELATED [EMAPA:31864] xref: EMAPA:31864 is_a: UBERON:0019248 ! early embryo [Term] id: UBERON:0019252 name: 8-cell stage embryo synonym: "8-cell embryo" RELATED [EMAPA:31865] synonym: "eight-cell embryo" RELATED [EMAPA:31865] xref: EMAPA:31865 is_a: UBERON:0019250 {source="EMAPA"} ! 4-8 cell stage embryo [Term] id: UBERON:0019253 name: upper secondary incisor tooth synonym: "maxillary secondary incisor tooth" EXACT [FMA:55712] synonym: "upper permanent incisor" EXACT [] synonym: "upper permanent incisor tooth" EXACT [FMA:55712] xref: FMA:55712 is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0018550 ! secondary incisor tooth is_a: UBERON:0018613 ! secondary upper tooth [Term] id: UBERON:0019254 name: upper eyelash subset: pheno_slim synonym: "eyelash of upper eyelid" EXACT [FMA:59408] synonym: "hair of upper eyelid" RELATED [] synonym: "upper eyelid cilia" RELATED OMO:0003004 [] synonym: "upper eyelid cilium" EXACT [] synonym: "upper eyelid eyelash" EXACT [FMA:59408] xref: FMA:59408 is_a: UBERON:0001702 ! eyelash is_a: UBERON:0010171 ! strand of hair of face relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0019255 name: lower eyelash subset: pheno_slim synonym: "eyelash of lower eyelid" EXACT [FMA:59409] synonym: "hair of lower eyelid" RELATED [] synonym: "lower eyelid cilia" RELATED OMO:0003004 [] synonym: "lower eyelid cilium" EXACT [] synonym: "lower eyelid eyelash" EXACT [FMA:59409] xref: FMA:59409 is_a: UBERON:0001702 ! eyelash is_a: UBERON:0010171 ! strand of hair of face relationship: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0019258 name: white matter of hindbrain def: "A white matter that is part of the hindbrain." [OBOL:automatic] subset: human_reference_atlas xref: DHBA:10668 xref: FMA:268636 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0002028 ! hindbrain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019261 name: white matter of forebrain def: "A white matter that is part of the forebrain." [OBOL:automatic] subset: human_reference_atlas xref: DHBA:10557 xref: FMA:268634 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001890 ! forebrain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019262 name: white matter of myelencephalon def: "A white matter that is part of the myelencephalon." [OBOL:automatic] synonym: "myelencephalic white matter" EXACT [HBA:MYWM] xref: HBA:9298 is_a: UBERON:0019258 ! white matter of hindbrain relationship: part_of UBERON:0005290 ! myelencephalon [Term] id: UBERON:0019263 name: gray matter of hindbrain subset: human_reference_atlas synonym: "gray matter of the hindbrain" EXACT [DHBA:HGM] xref: DHBA:10654 xref: FMA:268630 is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0002028 ! hindbrain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019264 name: gray matter of forebrain subset: human_reference_atlas xref: DHBA:10157 xref: FMA:268608 is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0001890 ! forebrain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019267 name: gray matter of midbrain subset: human_reference_atlas xref: DHBA:10649 xref: FMA:83913 is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0001891 ! midbrain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019269 name: gray matter of diencephalon xref: FMA:83912 is_a: UBERON:0019264 ! gray matter of forebrain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0019272 name: mesomere 1 synonym: "mesomere M1" EXACT [EHDAA2:0004353] xref: DHBA:12316 xref: DMBA:16650 xref: EHDAA2:0004353 is_a: UBERON:0014776 ! midbrain neuromere [Term] id: UBERON:0019274 name: mesomere 2 synonym: "mesomere 2 (preisthmus or caudal midbrain)" EXACT [DMBA:m2] synonym: "mesomere M2" EXACT [EHDAA2:0004354] xref: DHBA:12317 xref: DMBA:16751 xref: EHDAA2:0004354 is_a: UBERON:0014776 ! midbrain neuromere [Term] id: UBERON:0019275 name: uncinate fasciculus of the forebrain def: "A fiber pathway in the cerebral white matter that connects anterior portions of the temporal lobe with the inferior frontal gyrus and the middle frontal gyrus. It is not readily distinguished in myelin-stained cross-sections (adapted from Brain Info)." [NLX:98733] synonym: "uncinate fasciculus of cerebral hemisphere" RELATED [NeuroNames:1444] xref: HBA:9284 xref: neuronames:1444 xref: NLX:98733 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003044 ! uncinate fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0019278 name: inferior rostral gyrus subset: human_reference_atlas xref: BIRNLEX:1447 xref: DHBA:12130 xref: HBA:4900 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019279 name: superior rostral gyrus subset: human_reference_atlas synonym: "superior rostral gyrus" EXACT [BIRNLEX:1311] xref: BIRNLEX:1311 xref: DHBA:12129 xref: HBA:4897 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019280 name: rostral gyrus subset: human_reference_atlas xref: DHBA:146034876 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019283 name: lateral longitudinal stria synonym: "lateral white stria of lancisi" EXACT [FMA:62439] xref: DHBA:12064 xref: FMA:62439 xref: HBA:265505146 xref: neuronames:174 is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 {source="FMA"} ! stria of telencephalon relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus [Term] id: UBERON:0019284 name: rhombomere 9 synonym: "r9" EXACT OMO:0003000 [DMBA:r9] xref: DMBA:17476 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019285 name: rhombomere 10 synonym: "r10" EXACT OMO:0003000 [DMBA:r10] xref: DMBA:17538 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019286 name: rhombomere 11 synonym: "r11" EXACT OMO:0003000 [DMBA:r11] xref: DMBA:17596 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019289 name: accessory olfactory bulb external plexiform layer synonym: "AOB, outer plexiform layer" EXACT [DMBA:AOPl] xref: DMBA:15965 xref: EMAPA:35107 xref: MA:0002932 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb [Term] id: UBERON:0019290 name: accessory olfactory bulb internal plexiform layer synonym: "AOB, internal plexiform layer" EXACT [DMBA:AIPl] xref: DMBA:15962 xref: EMAPA:35110 xref: MA:0002934 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb [Term] id: UBERON:0019291 name: white matter of metencephalon xref: FMA:83939 xref: HBA:9287 is_a: UBERON:0019258 ! white matter of hindbrain relationship: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0019292 name: white matter of pons xref: FMA:83940 is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0019291 ! white matter of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0019293 name: white matter of pontine tegmentum alt_id: UBERON:0025819 synonym: "pontine white matter tracts" EXACT [HBA:PoWM] synonym: "predominantly white regional part of pontine tegmentum" EXACT [BIRNLEX:1069] synonym: "substantia alba tegmenti pontis" EXACT [FMA:TA] synonym: "white matter of pontile tegmentum" EXACT [FMA:83942] synonym: "white substance of pontile tegmentum" EXACT [FMA:83942] xref: BIRNLEX:1069 xref: FMA:83942 xref: HBA:265505486 is_a: UBERON:0019292 ! white matter of pons relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0019294 name: commissure of telencephalon synonym: "telencephalic commissures" EXACT [HBA:TELCom] xref: HBA:9220 is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0019295 name: caudal intralaminar nuclear group synonym: "caudal group of intralaminar nuclei" EXACT [HBA:ILc] synonym: "ILc" RELATED OMO:0003000 [HBA:ILc] synonym: "posterior group of intralaminar nuclei" EXACT [DHBA:PILN] synonym: "posterior intralaminar nucleus of the thalamus" RELATED [NeuroNames:1762] synonym: "posterior intralaminar thalamic nucleus" RELATED [NeuroNames:1762] xref: DHBA:10448 xref: HBA:12921 xref: neuronames:1762 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002733 ! intralaminar nuclear group [Term] id: UBERON:0019303 name: occipital sulcus synonym: "occipital lobe sulcus" EXACT [] xref: HBA:9386 xref: NCIT:C33196 xref: SCTID:314148004 xref: UMLS:C1518530 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0019304 name: sensory organ epithelium xref: EMAPA:35952 xref: MA:0003174 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0000020 ! sense organ [Term] id: UBERON:0019306 name: nose epithelium xref: EMAPA:35958 xref: MA:0003171 is_a: UBERON:0019304 ! sensory organ epithelium relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0019307 name: epithelium of external nose def: "Epithelial layer that is part of the external part of the nose." [http://orcid.org/0000-0002-6601-2165] synonym: "epithelium of skin of external nose" EXACT [FMA:63143] xref: FMA:63143 is_a: UBERON:0012329 {source="FMA"} ! keratinized stratified squamous epithelium is_a: UBERON:0019306 ! nose epithelium relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:0019308 name: septohypothalamic nucleus def: "A group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 )." [neuronames:1175] synonym: "SHy" RELATED OMO:0003000 [DHBA:SHy] xref: DHBA:13033 xref: DMBA:15761 xref: neuronames:1175 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="DHBA"} ! septal nuclear complex [Term] id: UBERON:0019310 name: glossopharyngeal nerve root synonym: "glossopharyngeal nerve root" EXACT [BIRNLEX:1533] xref: BIRNLEX:1533 xref: DHBA:12887 xref: DMBA:17747 xref: HBA:9334 is_a: UBERON:0006843 ! root of cranial nerve relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0019311 name: root of olfactory nerve def: "The initial segment of an olfactory nerve, leaving the central nervous system." [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory nerve root" EXACT [BIRNLEX:1632] xref: BIRNLEX:1632 is_a: UBERON:0002211 ! nerve root [Term] id: UBERON:0019312 name: ventrolateral nucleus of solitary tract synonym: "nucleus of the solitary tract, ventrolateral part" RELATED [BIRNLEX:2664] synonym: "ventrolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2664] synonym: "ventrolateral subnucleus of solitary tract, left" EXACT [HBA:SolVL] xref: BIRNLEX:2664 xref: DHBA:12569 xref: FMA:229583 xref: HBA:9664 xref: neuronames:747 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0019314 name: epifascicular nucleus xref: DHBA:12649 xref: HBA:9551 xref: neuronames:1118 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon [Term] id: UBERON:0019315 name: meibum def: "An oily substance that prevents evaporation of the eye's tear film." [PMID:20664693] synonym: "tarsal gland secretion" RELATED [] is_a: UBERON:0001866 ! sebum relationship: part_of UBERON:0000019 ! camera-type eye property_value: function_notes "provides barrier to prevent dessication of cornea[ISBN:0123813611]" xsd:string property_value: location_notes "part of surface lipid layer of tear film" xsd:string [Term] id: UBERON:0019319 name: exocrine gland of integumental system def: "An exocrine gland that is part of a integumental system." [GOC:dos, http://orcid.org/0000-0002-6601-2165] synonym: "integumental exocrine gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "integumental system exocrine gland" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003297 ! gland of integumental system [Term] id: UBERON:0019320 name: precordial region def: "A subdivision of the trunk that is comprised of the epigastrium and the anterior lower thorax." [http://orcid.org/0000-0001-9114-8737] synonym: "precordial region" EXACT [FMA:12824] synonym: "precordium" EXACT [FMA:12824] xref: FMA:12824 xref: SCTID:279231003 is_a: UBERON:0009569 ! subdivision of trunk relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0019324 name: intraorbital lacrimal gland def: "A lacrimal gland located superficially at the lateral canthus, where both the lacrimal gland and Harderian gland ducts open." [ISBN:0123813611, MGI:anna] xref: EMAPA:36578 xref: MA:0003109 xref: NCIT:C60574 xref: UMLS:C1882706 is_a: UBERON:0001817 {source="MA"} ! lacrimal gland relationship: never_in_taxon NCBITaxon:9606 [Term] id: UBERON:0019325 name: exorbital lacrimal gland def: "A lacrimal gland located subcutaneously at the anteroventral base of the ear adjacent to the parotid gland." [ISBN:0123813611, MGI:anna] synonym: "exorbital gland" RELATED [] synonym: "exorbital lacrimal gland" EXACT [MGI:anna] synonym: "extraorbital gland" RELATED [] synonym: "extraorbital lacrimal gland" RELATED [] xref: EMAPA:36577 xref: MA:0003110 xref: NCIT:C60564 xref: UMLS:C1882664 is_a: UBERON:0001817 {source="MA"} ! lacrimal gland relationship: never_in_taxon NCBITaxon:9606 property_value: taxon_notes "more than 10% of rat exorbital gland appears to be composed of harderian gland-like cells by 22 months of age (Coujard 1974; Sashima et al. 1989).[PMID:7559104]" xsd:string [Term] id: UBERON:0019326 name: lobe of lacrimal gland def: "An anatomical lobe that is part of a lacrimal gland." [http://orcid.org/0000-0002-6601-2165] synonym: "lacrimal gland zone" EXACT [FMA:59381] synonym: "zone of lacrimal gland" EXACT [FMA:59381] xref: FMA:59381 is_a: UBERON:0009912 ! anatomical lobe property_value: external_ontology_notes "the placement of FMA zone of lacrimal gland here may be incorrect" xsd:string {external_ontology="FMA"} property_value: taxon_notes "In humans the lacrimal gland consists of two contiguous lobes [ISBN:0123813611]" xsd:string [Term] id: UBERON:0019327 name: orbital lobe of lacrimal gland def: "Larger of the two lacrimal gland lobes located superficially." [ISBN:0123813611] synonym: "orbital part of lacrimal gland" EXACT [FMA:59383] synonym: "pars orbitalis (glandula lacrimalis)" EXACT [FMA:59383] synonym: "pars orbitalis glandulae lacrimalis" EXACT OMO:0003011 [FMA:59383, FMA:TA] xref: FMA:59383 xref: SCTID:280621001 is_a: UBERON:0019326 {source="ISBN:0123813611"} ! lobe of lacrimal gland [Term] id: UBERON:0019328 name: palpebral lobe of lacrimal gland def: "Smaller of the two lacrimal gland lobes located at the eyelid." [ISBN:0123813611] synonym: "palpebral part of lacrimal gland" EXACT [FMA:59384] synonym: "pars palpebralis glandulae lacrimalis" EXACT OMO:0003011 [FMA:59384, FMA:TA] xref: FMA:59384 xref: SCTID:280622008 is_a: UBERON:0019326 {source="ISBN:0123813611"} ! lobe of lacrimal gland [Term] id: UBERON:0020358 name: accessory XI nerve nucleus def: "The spinal accessory nucleus lies within the cervical spinal cord (C1-C5) in the ventral horn. The nucleus ambiguus is classically said to provide the 'cranial component' of the accessory nerve. However, the very existence of this cranial component has been recently questioned and seen as contributing exclusively to the vagus nerve. The terminology continues to be used in describing both human anatomy, and that of other animals." [Wikipedia:Spinal_accessory_nucleus] comment: See also: Wikipedia:Spinal_accessory_nucleus synonym: "accessory neural nucleus" EXACT [FMA:83965] synonym: "accessory nucleus of anterior column of spinal cord" RELATED [NeuroNames:2003] synonym: "nucleus accessorius columnae anterioris medullae spinalis" RELATED OMO:0003011 [NeuroNames:2003] synonym: "nucleus nervi accessorii" RELATED OMO:0003011 [NeuroNames:2003] synonym: "nucleus of accessory nerve" RELATED [NeuroNames:2003] synonym: "nucleus of the accessory nerve" RELATED [NeuroNames:2003] synonym: "nucleus of the spinal accessory nerve" RELATED [NeuroNames:2003] synonym: "spinal accessory nucleus" RELATED [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37067 {source="MA:th"} xref: FMA:83965 xref: MA:0001033 xref: neuronames:2003 xref: Wikipedia:Spinal_accessory_nucleus is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:0020550 name: auricular blood vessel def: "A blood vessel that supplies or drains an ear." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37386 {source="MA:th"} xref: MA:0001226 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0022229 name: posterior amygdaloid nucleus synonym: "posterior amygdalar nucleus" EXACT [ABA:PA] xref: EMAPA:35694 xref: MA:0002928 xref: MBA:780 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 {source="MA"} ! amygdala [Term] id: UBERON:0022230 name: retrohippocampal region synonym: "retrohippocampal cortex" EXACT [MA:0000920] xref: EMAPA:35745 xref: MA:0000920 xref: MBA:822 xref: neuronames:2729 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation [Term] id: UBERON:0022232 name: secondary visual cortex def: "A functional part of the visual cortex that plays a crucial role in the integration of information from various visual modalities and contribute to higher-order visual functions, including colour, object recognition and spatial awareness." [ISBN:978-0-323-10027-4, ISSN:0072-9752, WikipediaVersioned:Visual_cortex&oldid=1268682728] xref: EMAPA:35758 xref: MA:0000915 is_a: UBERON:8440011 ! cortical visual area relationship: part_of UBERON:0000411 {source="cjm"} ! visual cortex [Term] id: UBERON:0022234 name: medial longitudinal stria synonym: "medial longitudinal stria" RELATED [NeuroNames:175] synonym: "medial longitudinal stria of Lancisi" RELATED [NeuroNames:175] synonym: "medial longitudinal stria of lancisi" EXACT [FMA:67956] synonym: "medial stripe of Lancisi" RELATED [NeuroNames:175] synonym: "medial stripe of lancisi" EXACT [FMA:67956] synonym: "medial white stria of Lancisi" RELATED [NeuroNames:175] synonym: "medial white stria of lancisi" EXACT [FMA:67956] synonym: "stria Lancisii" RELATED OMO:0003011 [NeuroNames:175] synonym: "stria longitudinalis interna" RELATED OMO:0003011 [NeuroNames:175] synonym: "stria longitudinalis medialis" RELATED OMO:0003011 [NeuroNames:175] synonym: "stria of lancisi" EXACT [FMA:67956] synonym: "taenia libera Lancisi" RELATED OMO:0003011 [NeuroNames:175] synonym: "taenia libra" RELATED OMO:0003011 [NeuroNames:175] xref: DHBA:12066 xref: FMA:67956 xref: HBA:265505202 xref: neuronames:175 is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 {source="FMA"} ! stria of telencephalon relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0022235 name: peduncle of diencephalon synonym: "diencephalon peduncle" EXACT [FMA:62444] xref: FMA:62444 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0007417 ! peduncle of neuraxis [Term] id: UBERON:0022236 name: peduncle of thalamus synonym: "thalamic peduncle" EXACT [] xref: MBA:365 xref: neuronames:1982 is_a: UBERON:0022235 ! peduncle of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022237 name: anterior thalamic peduncle synonym: "anterior peduncle" EXACT [FMA:62074] synonym: "frontal peduncle" EXACT [FMA:62074] synonym: "frontal thalamic peduncle" EXACT [FMA:62074] synonym: "pedunculus rostralis thalami" EXACT OMO:0003011 [FMA:62074, FMA:TA] synonym: "rostral peduncle of thalamus" EXACT [FMA:62074] xref: DHBA:266441633 xref: FMA:62074 xref: HBA:265505274 xref: neuronames:369 is_a: UBERON:0011299 ! white matter of telencephalon is_a: UBERON:0022236 ! peduncle of thalamus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0022241 name: superior thalamic peduncle synonym: "centroparietal peduncle" EXACT [FMA:62075] synonym: "centroparietal thalamic peduncle" EXACT [FMA:62075] synonym: "middle thalamic peduncle" EXACT [FMA:62075] synonym: "pedunculus thalami superior" EXACT OMO:0003011 [FMA:62075, FMA:TA] synonym: "superior peduncle" EXACT [FMA:62075] xref: FMA:62075 xref: neuronames:370 is_a: UBERON:0022236 ! peduncle of thalamus [Term] id: UBERON:0022242 name: inferior thalamic peduncle synonym: "inferior peduncle" EXACT [FMA:62076] synonym: "pedunculus inferior thalami" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "pedunculus thalami caudalis" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "pedunculus thalami inferior" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "pedunculus thalamicus inferior" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "temporal peduncle" EXACT [FMA:62076] synonym: "temporal thalamic peduncle" EXACT [FMA:62076] xref: DHBA:12059 xref: FMA:62076 xref: HBA:265505110 xref: neuronames:371 is_a: UBERON:0022236 ! peduncle of thalamus [Term] id: UBERON:0022243 name: posterior thalamic peduncle synonym: "occipital peduncle" EXACT [FMA:62077] synonym: "occipital thalamic peduncle" EXACT [FMA:62077] synonym: "pedunculus ventrocaudalis thalami" EXACT OMO:0003011 [FMA:62077, FMA:TA] synonym: "posterior peduncle" EXACT [FMA:62077] synonym: "ventrocaudal thalamic peduncle" EXACT [FMA:62077] xref: FMA:62077 xref: neuronames:372 is_a: UBERON:0022236 ! peduncle of thalamus [Term] id: UBERON:0022244 name: anterior orbital gyrus synonym: "AOrG" RELATED OMO:0003000 [HBA:AOrG] xref: FMA:256196 xref: HBA:4053 xref: SCTID:279196000 is_a: UBERON:0007193 {source="FMA"} ! orbital gyrus [Term] id: UBERON:0022246 name: superior longitudinal fasciculus def: "The superior longitudinal fasciculus (also called the superior longitudinal fascicle or SLF) is a pair of long bi-directional bundles of neurons connecting the front and the back of the cerebrum. Each association fiber bundle is lateral to the centrum ovale of a cerebral hemisphere and connects the frontal, occipital, parietal, and temporal lobes. The neurons pass from the frontal lobe through the operculum to the posterior end of the lateral sulcus where numerous neurons radiate into the occipital lobe and other neurons turn downward and forward around the putamen and radiate to anterior portions of the temporal lobe." [Wikipedia:Superior_longitudinal_fasciculus] synonym: "superior longitudinal fascicle" RELATED [Wikipedia:Superior_longitudinal_fasciculus] xref: DHBA:10592 xref: FMA:77631 xref: HBA:9281 xref: neuronames:2080 xref: SCTID:369082006 xref: Wikipedia:Superior_longitudinal_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0022247 name: forebrain ipsilateral fiber tracts synonym: "FIFT" RELATED OMO:0003000 [DHBA:FIFT] xref: DHBA:10568 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0019261 {source="DHBA"} ! white matter of forebrain [Term] id: UBERON:0022248 name: cerebral nerve fasciculus synonym: "cerebral fascicle" EXACT [FMA:260712] synonym: "cerebral fasciculus" EXACT [FMA:260712] synonym: "nerve fascicle of telencephalon" EXACT [] synonym: "telencephalic fascicle" EXACT [] synonym: "telencephalic nerve fascicle" EXACT [] xref: FMA:260712 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0022250 name: subcallosal fasciculus synonym: "fasciculus occipitofrontalis superior" EXACT OMO:0003011 [FMA:77634, FMA:TA] synonym: "fasciculus subcallosus" EXACT OMO:0003011 [FMA:77637, FMA:TA] synonym: "subcallosal bundle" RELATED [NeuroNames:2141] synonym: "superior fronto-occipital bundle" RELATED [NeuroNames:2141] synonym: "superior fronto-occipital fasciculus" RELATED [NeuroNames:2141] synonym: "superior occipito-frontal fascicle" RELATED [NeuroNames:2141] synonym: "superior occipitofrontal fasciculus" EXACT [DHBA:12071] synonym: "superior occipitofrontal fasciculus" RELATED [NeuroNames:2141] xref: DHBA:12071 xref: FMA:77634 xref: FMA:77637 xref: HBA:265505338 xref: neuronames:2141 xref: SCTID:369086009 is_a: UBERON:0034754 ! occipitofrontal fasciculus relationship: dubious_for_taxon NCBITaxon:9606 {source="WP"} [Term] id: UBERON:0022252 name: precentral sulcus def: "The precentral sulcus lies parallel to, and in front of, the central sulcus. (A sulcus is one of the prominent grooves on the surface of the human brain. ) The precentral sulcus divides the inferior, middle, and superior frontal gyri from the precentral gyrus. In the majority of brains, the precentral sulcus is divided into two parts: the inferior precentral sulcus and the superior precentral sulcus. However, the precentral sulcus may also be divided into three parts or form one continuous sulcus." [Wikipedia:Precentral_sulcus] xref: DHBA:10628 xref: FMA:83800 xref: HBA:9355 xref: NCIT:C33394 xref: SCTID:279341002 xref: Wikipedia:Precentral_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0014639 {source="HBA"} ! frontal sulcus [Term] id: UBERON:0022254 name: ventral thalamic fasciculus def: "The thalamic fasciculus is a component of the subthalamus. It is sometimes considered synonymous with 'field H1 of Forel'. Nerve fibres forming a composite bundle containing cerebellothalamic (crossed) and pallidothalamic (uncrossed) fibres that is insinuated between the thalamus and zona incerta. The thalamic fasciculus consists of the joint fibers of the ansa lenticularis and the lenticular fasciculus, coming from different portions of the medial globus pallidus, before they jointly enter the ventral lateral nucleus of the thalamus." [Wikipedia:Thalamic_fasciculus] synonym: "area subthalamica tegmentalis, pars dorsomedialis" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis H1" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis, pars dorsalis" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis, pars dorsalis (Forel)" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "campus foreli (pars dorsalis)" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "fasciculus thalamicus" EXACT [FMA:TA] synonym: "fasciculus thalamicus [h1]" EXACT [FMA:TA] synonym: "fasciculus thalamicus hypothalami" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "field H1" EXACT [FMA:62065] synonym: "forel's field h1" EXACT [FMA:62065] synonym: "forelli campus I" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "h1 bundle of Forel" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "h1 field of Forel" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "tegmental area h1" EXACT [FMA:62065] synonym: "thalamic fasciculus" EXACT [FMA:62065] synonym: "thalamic fasciculus [h1]" EXACT [FMA:62065] xref: DHBA:10593 xref: FMA:62065 xref: HBA:265505374 xref: neuronames:439 xref: SCTID:369185006 xref: Wikipedia:Thalamic_fasciculus is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001900 ! ventral thalamus relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0022256 name: subthalamic fasciculus def: "The subthalamic fasciculus is a tract which connects the subthalamic nucleus and the globus pallidus. It is a bidirectional connection between the GP and the subthalamic nucleus, including (1) fibers running from the GPe to the subthalamic nucleus, and (2) fibers running from the STN back to the GP." [Wikipedia:Subthalamic_fasciculus] synonym: "fasciculus subthalamicus" RELATED OMO:0003011 [NeuroNames:2280] synonym: "subthalamic fascicle" RELATED [NeuroNames:2280] synonym: "subthalamic fasciculus" RELATED [NeuroNames:2280] xref: DHBA:12089 xref: FMA:77525 xref: HBA:265505350 xref: MBA:317 xref: neuronames:2280 xref: SCTID:369187003 xref: Wikipedia:Subthalamic_fasciculus is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0022258 name: endolemniscal nucleus synonym: "EL" RELATED OMO:0003000 [HBA:EL] xref: DHBA:12648 xref: FMA:77099 xref: HBA:9548 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon [Term] id: UBERON:0022259 name: white matter radiation synonym: "neuraxis radiation" EXACT [FMA:83859] synonym: "radiation of neuraxis" EXACT [FMA:83859] xref: FMA:83859 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0022260 name: radiation of cerebral hemisphere synonym: "cerebral hemisphere radiation" EXACT [FMA:61940] xref: FMA:61940 is_a: UBERON:0002437 ! cerebral hemisphere white matter is_a: UBERON:0022259 ! white matter radiation relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter [Term] id: UBERON:0022262 name: auditory radiation def: "The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness." [Wikipedia:Acoustic_radiation] synonym: "acoustic radiation" EXACT [FMA:62413] synonym: "auditory radiation" RELATED [Wikipedia:Acoustic_radiation] synonym: "auditory radiations" RELATED [Wikipedia:Acoustic_radiation] synonym: "geniculotemporal radiation" EXACT [FMA:62413] synonym: "geniculotemporal tract" EXACT [FMA:62413] synonym: "radiatio acustica" EXACT OMO:0003011 [FMA:TA] xref: DHBA:266441583 xref: FMA:62413 xref: HBA:265504974 xref: neuronames:2084 xref: Wikipedia:Acoustic_radiation is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0022264 name: optic radiation def: "The optic radiation (also known as the geniculo-calcarine tract or as the geniculostriate pathway) is a collection of axons from relay neurons in the lateral geniculate nucleus of the thalamus carrying visual information to the visual cortex (also called striate cortex) along the calcarine fissure. There is one such tract on each side of the brain." [Wikipedia:Optic_radiation] subset: human_reference_atlas synonym: "archambault%27s loop" RELATED [Wikipedia:Optic_radiation] synonym: "genicula-celcarine tract" RELATED [Wikipedia:Optic_radiation] synonym: "geniculo-calcarine tract" RELATED [Wikipedia:Optic_radiation] synonym: "geniculocalcarine tract" RELATED [Wikipedia:Optic_radiation] synonym: "geniculostriate pathway" RELATED [Wikipedia:Optic_radiation] synonym: "Gratiolet's radiation" EXACT [FMA:61941] synonym: "meyer's loop" RELATED [Wikipedia:Optic_radiation] synonym: "optic radiations" RELATED [Wikipedia:Optic_radiation] synonym: "radiatio optica" RELATED [Wikipedia:Optic_radiation] synonym: "railroad nystagmus" RELATED [Wikipedia:Optic_radiation] xref: DHBA:266441621 xref: FMA:61941 xref: HBA:9311 xref: neuronames:1440 xref: SCTID:280953008 xref: Wikipedia:Optic_radiation is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022268 name: planum temporale def: "The planum temporale is the cortical area just posterior to the auditory cortex within the Sylvian fissure. It is a triangular region which forms the heart of Wernicke's area, one of the most important functional areas for language. The planum temporale shows a significant asymmetry. In 65% of all individuals the left planum temporale appears to be more developed, while the right planum temporale is more developed in only 10%. In some peoplebs brains, the planum temporale is more than five times larger on the left than on the right, making it the most asymmetrical structure in the brain. This greater size of the left planum temporale compared with the right is already present in the foetus, where it can be observed starting from the 31st week of gestation. This observation strengthens the hypothesis of a genetic predisposition for brain asymmetry." [http://neuro.imm.dtu.dk/wiki/Planum_temporale, Wikipedia:Planum_temporale] subset: human_reference_atlas synonym: "PLT" RELATED OMO:0003000 [HBA:PLT] xref: DHBA:12145 xref: HBA:4171 xref: neuronames:2333 xref: Wikipedia:Planum_temporale is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001871 {source="HBA"} ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 relationship: source_atlas Harvard-Oxford:Atlas property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022271 name: corticopontine fibers def: "Corticopontine fibers, commonly referred to as corticobulbar fibers, are projections from the cerebral cortex to the pontine nuclei. Depending upon the lobe of origin, they can be classified as frontopontine fibers, parietopontine fibers, temporopontine fibers and occipitopontine fibers. They are motor fibers that stretch from the precentral gyrus (motor strip) to the nuclei of cranial nerves V (trigenimal), VII (facial) and XII (hypoglossal). These fibers run alongside the corticospinal fibers." [Wikipedia:Corticopontine_fibers] synonym: "cortico-pontine fibers" EXACT [HBA:cpn] synonym: "cortico-pontine fibers, pontine part" EXACT [DHBA:cpn] synonym: "corticopontine" RELATED [Wikipedia:Corticopontine_fibers] synonym: "corticopontine fibers" EXACT [FMA:75190] synonym: "corticopontine fibers of pons" EXACT [] synonym: "corticopontine fibers set" EXACT [FMA:75190] synonym: "corticopontine fibres" EXACT [FMA:75190] synonym: "corticopontine fibres" RELATED [Wikipedia:Corticopontine_fibers] synonym: "fibrae corticopontinae" EXACT [FMA:TA] synonym: "tractus corticopontinus" EXACT OMO:0003011 [FMA:TA] xref: DHBA:266441721 xref: FMA:75190 xref: HBA:265505490 xref: neuronames:1322 xref: SCTID:91366009 xref: Wikipedia:Corticopontine_fibers is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0019293 {source="HBA"} ! white matter of pontine tegmentum [Term] id: UBERON:0022272 name: corticobulbar tract def: "The corticobulbar (or corticonuclear) tract is a white matter pathway connecting the cerebral cortex to the brainstem. The term 'bulbar' refers to the brainstem, as 'bulb' was a historical term meaning the area currently called the brainstem. The 'bulb' is an archaic term for the medulla oblongata. In clinical usage, it includes the pons as well." [Wikipedia:Corticobulbar_tract] synonym: "bulbar" RELATED [Wikipedia:Corticobulbar_tract] synonym: "cbu-h" RELATED OMO:0003000 [DHBA:cbu-h] synonym: "cortico-bulbar tract" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar axons" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar fiber" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar fibre" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar pathway" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticonuclear tract" RELATED [Wikipedia:Corticobulbar_tract] xref: DHBA:12774 xref: FMA:275544 xref: HBA:265505058 xref: MBA:994 xref: neuronames:1319 xref: Wikipedia:Corticobulbar_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0036224 ! corticobulbar and corticospinal tracts [Term] id: UBERON:0022273 name: lacrimal lake def: "A small cistern-like area of the conjunctiva at the medial angle of the eye, in which the tears collect after bathing the front surface of the eyeball and the conjunctival sac." [MGI:anna] synonym: "lacrymal lake" EXACT [MGI:anna] synonym: "lacus lacrimalis" EXACT OMO:0003011 [] xref: FMA:59402 xref: SCTID:368792002 xref: Wikipedia:Lacrimal_lake is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0022274 name: lacrimal papilla def: "A small conical elevation at the basal angle of the lacrimal lake." [Wikipedia:Lacrimal_papilla] synonym: "papilla lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_papilla] xref: FMA:59407 xref: SCTID:362533003 xref: Wikipedia:Lacrimal_papilla is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001850 ! lacrimal drainage system [Term] id: UBERON:0022275 name: colic flexure def: "A sharp bend between consecutive segments of the colon." [http://orcid.org/0000-0002-6601-2165] synonym: "flexura coli" EXACT [FMA:14555] xref: FMA:14555 xref: SCTID:245426004 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:0022276 name: splenic flexure of colon def: "The splenic (or left colic) flexure is a sharp bend between the transverse and the descending colon in the left upper quadrant of humans. The left colic flexure is near the spleen, and hence called the splenic flexure. There are two colic flexures in the transverse colon — the other being the hepatic flexure in the right upper quadrant." [Wikipedia:Splenic_flexure] subset: human_reference_atlas synonym: "flexura coli splenica" EXACT OMO:0003011 [FMA:TA] synonym: "left colic flexure" EXACT [FMA:14551] synonym: "left colic flexure" RELATED [Wikipedia:Splenic_flexure] synonym: "splenic flexure" EXACT [FMA:14551] synonym: "splenic flexure of colon" EXACT [FMA:14551] xref: FMA:14551 xref: NCIT:C12267 xref: SCTID:245428003 xref: UMLS:C0227387 xref: Wikipedia:Splenic_flexure is_a: UBERON:0022275 ! colic flexure relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0022277 name: hepatic flexure of colon def: "Hepatic (or the right colic) flexure is the sharp bend between the ascending and the transverse colon. The right colic flexure is adjacent to the liver, and is therefore also known as the hepatic flexure. Thus, the left colic flexure is also known as the splenic flexure (as it is close to the spleen). The hepatic flexure lies in the right upper quadrant of the abdomen in humans." [Wikipedia:Hepatic_flexure] subset: human_reference_atlas synonym: "flexura coli heaptica" EXACT OMO:0003011 [FMA:TA] synonym: "hepatic flexure" EXACT [FMA:14550] synonym: "hepatic flexure of colon" EXACT [FMA:14550] synonym: "right colic flexure" EXACT [FMA:14550] synonym: "right colic flexure" RELATED [Wikipedia:Hepatic_flexure] xref: FMA:14550 xref: NCIT:C12266 xref: SCTID:245427008 xref: UMLS:C0227385 xref: Wikipedia:Hepatic_flexure is_a: UBERON:0022275 ! colic flexure relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0022278 name: nucleus of pudendal nerve def: "A nucleus in the ventral part of the anterior horn of the sacral region of the spinal cord that is the origin of the pudendal nerve." [Wikipedia:Onuf%27s_nucleus, Wikipedia:Pudendal_nerve#Nucleus] synonym: "nucleus of Onuf" EXACT [FMA:257031] synonym: "Onuf's nucleus" EXACT [FMA:77024] synonym: "pudendal neural nucleus" EXACT [FMA:77024] xref: FMA:257031 xref: FMA:77024 xref: neuronames:2701 xref: Wikipedia:Onuf%27s_nucleus is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0005853 ! sacral spinal cord ventral column property_value: function_notes "involved in the maintenance of micturition and defecatory continence, as well as muscular contraction during orgasm." xsd:string property_value: structure_notes "The neurons in Onuf's nucleus are motoneurons, and like most motoneurons they are characterized by their mulipolarity and large Nissl bodies" xsd:string [Term] id: UBERON:0022279 name: strand of hair on external ear synonym: "hair of external ear" EXACT [FMA:53671] synonym: "hair of tragus" EXACT [FMA:53671] synonym: "tragus hair" EXACT [FMA:53671] xref: FMA:53671 is_a: UBERON:0016446 ! hair of head relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0022280 name: epithelium of crypt of Lieberkuhn of small intestine synonym: "epithelium of small intestinal crypt of Lieberkuhn" EXACT [FMA:63243] synonym: "wall of small intestinal crypt of Lieberkuhn" RELATED [FMA:63243] xref: FMA:63243 is_a: UBERON:0001902 ! epithelium of small intestine is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn relationship: part_of UBERON:0001241 ! crypt of Lieberkuhn of small intestine [Term] id: UBERON:0022281 name: epithelium of crypt of Lieberkuhn of large intestine xref: FMA:63628 is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn relationship: part_of UBERON:0001984 ! crypt of Lieberkuhn of large intestine [Term] id: UBERON:0022282 name: secretion of Harderian gland def: "A merocrine secretion that is produced by a Harderian gland, containing lipids." [DOI:10.1007/978-3-642-76685-5_2] synonym: "Harderian gland fluid" EXACT [] synonym: "Harderian gland secretion" EXACT [] is_a: UBERON:0000456 ! secretion of exocrine gland property_value: taxon_notes "in amphibians, chiefly seromucoid with some lipids[PMID:7559104]" xsd:string property_value: taxon_notes "in birds, mucoid and lipid[PMID:7559104]" xsd:string property_value: taxon_notes "in mammals, predominantly lipid; mucoid secretion restricted to extraglandular duct tissue[PMID:7559104]" xsd:string property_value: taxon_notes "in the armadillo and opossum, mucous or serous acini may be present[PMID:7559104]" xsd:string [Term] id: UBERON:0022283 name: pineal recess of third ventricle def: "The diverticulum of the thin roof of the dorsocaudal third ventricle that projects into the stalk of the pineal gland." [ISBN:068340007X] synonym: "pineal recess" EXACT [FMA:78458] synonym: "pineal recess of 3V" EXACT [DHBA:266441661] synonym: "recessus epiphysis" RELATED OMO:0003011 [NeuroNames:456] synonym: "recessus pinealis" EXACT OMO:0003011 [FMA:TA] xref: DHBA:266441661 xref: EMAPA:18542 xref: FMA:78458 xref: neuronames:456 xref: SCTID:280070003 xref: SCTID:369281005 xref: Wikipedia:Pineal_recess is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0022284 name: lacrimal gland bud def: "The single bud-like invagination of the conjunctival fornix epithelium at the temporal aspect of the eye that signals lacrimal gland formation (Int Rev Cytol. 1996;168:1-80. Cell biology of the harderian gland)." [MGI:anna] xref: EMAPA:35464 is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001750 ! lacrimal apparatus property_value: taxon_notes "in mouse, the primary bud arises around E13.5 and extends caudally into the surrounding neural-crest derived periocular mesenchyme; between E15.5 and E16.5 the bud undergoes branching morphogenesis, forming both a major extra-orbital lobe and a minor intraorbital lobe" xsd:string [Term] id: UBERON:0022285 name: strand of tylotrich hair def: "A single large hair, surrounded by neurovascular tissue at the level of the sebaceous gland, with a hair follicle innervated by a hair-tylotrich neuron (CL:1001436), a rapidly acting mechanoreceptor." [CL:1001436, MP:0000977] xref: CL:1001436 is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0022286 name: secretion of nictitans gland def: "A secretion that is produced by a nictitans gland, containing glycoprotein." [DOI:10.1007/978-3-642-76685-5_2] synonym: "nictitans gland fluid" EXACT [] synonym: "nictitans gland secretion" EXACT [] is_a: UBERON:0000456 ! secretion of exocrine gland property_value: taxon_notes "mostly mucuous in pig[ISBN:1118473523]" xsd:string property_value: taxon_notes "seromucuous in cattle, cat and dog, elephant [ISBN:1118473523]" xsd:string property_value: taxon_notes "serous in horse [ISBN:1118473523]" xsd:string [Term] id: UBERON:0022287 name: tear film def: "An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet." [http://orcid.org/0000-0002-6601-2165] synonym: "precorneal film" EXACT [MGI:anna] is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid relationship: part_of UBERON:0001801 ! anterior segment of eyeball relationship: part_of UBERON:0010409 ! ocular surface region property_value: external_definition "the thin acellular fluid layer that adheres to the most superficial layer of the corneal epithelium and lubricates and protects the ocular surface; the film is generally composed of three layers: (i) an inner mucous layer, secreted largely by the conjunctival goblet cells with contributions from the lacrimal glands, which coats the cornea, provides a hydrophobic layer, and allows for even distribution of the tear film; (ii) a middle aqueous layer, secreted by the lacrimal glands, which keeps the corneal surface moist, and provides a mechanism for oxygenation and nutrient exchange with the avascular anterior corneal tissue; and (iii) an outer lipid layer, secreted principally by the Meibomian (tarsal) glands although lipid tear elements also are contributed by the Harderian glands; tear film lipids form a monolayer on the tear surface, and function by enhancing the surface tension which supports the integrity of the tear film against collapse due to gravity and also slows down the loss of the tear film by evaporation; in addition , the lipid layer provides a glassy, smooth interface between the air and the transparent cornea" xsd:string {source="MGI:anna"} property_value: function_notes "maintenance of the avascular transparent corneal epithelium" xsd:string property_value: structure_notes "The tear film is structurally complex with three distinct layers: a surface lipid layer, a middle aqueous layer, and an inner mucus layer[http://physiologyonline.physiology.org/content/13/2/97]" xsd:string [Term] id: UBERON:0022288 name: surface of eyeball synonym: "surface of region of wall of eyeball" RELATED [FMA:58315] xref: FMA:58315 is_a: UBERON:0036215 ! anatomical surface region [Term] id: UBERON:0022292 name: splenic arteriole xref: NCIT:C33596 xref: SCTID:282511007 is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003497 ! abdomen blood vessel relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0022293 name: reproductive gland secretion def: "A portion of organism substance that is secreted by a reproductive gland." [UBERON:cjm] synonym: "genital fluid" RELATED [] synonym: "genital secretion" RELATED [] synonym: "reproductive system fluid" RELATED [] synonym: "reproductive system fluid/secretion" RELATED [] synonym: "reproductive system secretion" RELATED [] is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0022294 name: morphological boundary def: "A two dimensional anatomical structure that corresponds to some structural discontinuity." [CARO:0001007] xref: CARO:0001007 is_a: UBERON:0010199 {source="CARO"} ! bona-fide anatomical boundary [Term] id: UBERON:0022295 name: integumental surface def: "The outer surface of an organism or its integumental system." [CARO:DOS] is_a: UBERON:0022294 ! morphological boundary [Term] id: UBERON:0022296 name: inferior palpebral branch of infra-orbital nerve def: "A nerve that innervates a lower eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] synonym: "rami palpebrales inferiores nervi infraorbitalis" EXACT OMO:0003011 [Wikipedia:Inferior_palpebral_nerve] xref: FMA:52983 xref: Wikipedia:Inferior_palpebral_nerve is_a: UBERON:0022297 ! palpebral branch of infra-orbital nerve is_a: UBERON:0022298 ! lower eyelid nerve [Term] id: UBERON:0022297 name: palpebral branch of infra-orbital nerve def: "A nerve that innervates an eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] synonym: "palpebral branch of maxillary nerve" EXACT [] xref: SCTID:280236007 is_a: UBERON:0003437 ! eyelid nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0022298 name: lower eyelid nerve def: "A nerve that innervates a lower eyelid." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003437 ! eyelid nerve [Term] id: UBERON:0022299 name: upper eyelid nerve def: "A nerve that innervates an upper eyelid." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003437 ! eyelid nerve [Term] id: UBERON:0022300 name: nasociliary nerve def: "A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva." [http://medical-dictionary.thefreedictionary.com/nasociliary+nerve] subset: human_reference_atlas synonym: "nasal nerve" EXACT [BTO:0001452] synonym: "nasociliary" RELATED [Wikipedia:Nasociliary_nerve] synonym: "nasociliary nerve" RELATED [BTO:0001452] synonym: "nervus nasociliaris" RELATED [BTO:0001452] xref: BTO:0001452 xref: FMA:52668 xref: NCIT:C33159 xref: SCTID:280220005 xref: Wikipedia:Nasociliary_nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0022301 name: long ciliary nerve def: "A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] subset: human_reference_atlas synonym: "long ciliary nerve" RELATED [Wikipedia:Long_ciliary_nerves] synonym: "nervi ciliares longi" RELATED OMO:0003011 [Wikipedia:Long_ciliary_nerves] xref: FMA:52691 xref: SCTID:280228003 xref: Wikipedia:Long_ciliary_nerves is_a: UBERON:0003438 ! iris nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0022302 name: short ciliary nerve def: "A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] subset: human_reference_atlas synonym: "lower branch of ciliary ganglion" EXACT [FMA:7041] synonym: "nervi ciliares breves" RELATED OMO:0003011 [Wikipedia:Short_ciliary_nerves] synonym: "nervi ciliares brevis" RELATED OMO:0003011 [] synonym: "short ciliary nerve" RELATED [Wikipedia:Short_ciliary_nerves] xref: FMA:7041 xref: SCTID:417598000 xref: Wikipedia:Short_ciliary_nerves is_a: UBERON:0003438 ! iris nerve is_a: UBERON:0004293 ! parasympathetic nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 property_value: structure_notes "Contains preganglionic parasympathetic axons." xsd:string [Term] id: UBERON:0022303 name: nervous system cell part layer def: "Single layer of a laminar structure, identified by different density, arrangement or size of cells and processes arranged in flattened layers or lamina[CUMBO]." [NLX:149357] subset: cumbo synonym: "lamina" BROAD [CUMBO:CUMBO] synonym: "layer" BROAD [CUMBO:CUMBO] xref: NLX:149357 is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0001016 ! nervous system property_value: editor_note "this is currently used to group some cellular layers that may not strictly conform to the CARO definition of cell-part layer. Consider genericisizing and introducing subtypes for cellular layer, fibrous layer and cell soma layer" xsd:string [Term] id: UBERON:0022314 name: superior colliculus stratum zonale def: "Most superficial layer of the superior colliculus consisting primarily of thin fibers derived primarily from the occipital cortex (Brodal, Neurological Anatomy, 2nd 3d, 1981, pg. 544)." [NLX:144108] subset: defined_by_cytoarchitecture synonym: "stratum zonale" RELATED [NLX:144108] synonym: "zonal layer of superior colliculus" RELATED [NLX:144108] xref: NLX:144108 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0022315 name: primary motor cortex layer 5 synonym: "primary motor cortex lamina V" RELATED [NLX:144263] synonym: "primary motor cortex layer V" RELATED [NLX:144263] xref: NLX:144263 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0001384 {source="nlx"} ! primary motor cortex relationship: part_of UBERON:0005394 {source="nlx"} ! cortical layer V property_value: terminology_notes "Note that in some lamination schemes, more particularly so in primates, this layer is referred to as layer IV thus resulting in some confusion when compared to the present scheme where the lamina dissecans is referred to layer IV[DOI:10.1155/2008/381243]" xsd:string [Term] id: UBERON:0022316 name: primary motor cortex layer 6 synonym: "primary motor cortex lamina 6" RELATED [NLX:144264] synonym: "primary motor cortex lamina VI" RELATED [NLX:144264] synonym: "primary motor cortex layer VI" RELATED [NLX:144264] xref: NLX:144264 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0001384 {source="nlx"} ! primary motor cortex relationship: part_of UBERON:0005395 {source="nlx"} ! cortical layer VI [Term] id: UBERON:0022317 name: olfactory cortex layer 1 def: "Surface layer of the olfactory cortex that contains dendrites, fiber systems and a small number of neurons. It has been divided into a superficial part and a deep part." [NLX:152609] synonym: "layer 1 of olfactory cortex" RELATED [NLX:152609] synonym: "olfactory cortex plexiform layer" RELATED [NLX:152609] xref: NLX:152609 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex [Term] id: UBERON:0022318 name: olfactory cortex layer 2 def: "Middle layer of olfactory cortex lying deep to layer 1 and superficial to layer 3, characterized by a compact layer of cell bodies. It can be divided into a superficial part and a deep part." [NLX:152610] synonym: "layer 2 of olfactory cortex" RELATED [NLX:152610] xref: NLX:152610 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex [Term] id: UBERON:0022319 name: lateral geniculate nucleus parvocellular layer def: "Layer of the lateral geniculate nucleus characterized by small cells (adapted from Wikipedia: https://en.wikipedia.org/wiki/Lateral_geniculate_nucleus)." [NLX:152619] synonym: "LGN P-cell layer" EXACT [NLX:152619] synonym: "parvocellular layer of lateral geniculate nucleus" RELATED [NLX:152619] xref: NLX:152619 is_a: UBERON:0013605 ! layer of lateral geniculate body [Term] id: UBERON:0022320 name: dorsal cochlear nucleus pyramidal cell layer xref: NLX:153848 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002829 ! dorsal cochlear nucleus [Term] id: UBERON:0022323 name: entorhinal cortex layer 4 def: "Layer of entorhinal cortex lying superficial to layer 5 and deep to layer 3, that is relatively acellular. (Paxinos, The rat nervous system, Academic Press, 1995, pg 473-474)." [NLX:39987] comment: This layer is better developed in the medial entorhinal cortex although species differences are apparent[DOI:10.1155/2008/381243] synonym: "entorhinal cortex layer IV" RELATED [NLX:39987] synonym: "lamina dessicans" RELATED [DOI:10.1155/2008/381243] synonym: "lamina dessicans of entorhinal cortex" RELATED [DOI:10.1155/2008/381243, NLX:39987] synonym: "layer 4 of entorhinal cortex" RELATED [NLX:39987] xref: NLX:39987 xref: NLXANAT:1005008 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex property_value: external_ontology_notes "the two NIFSTD classes appear to refer to the same structure[DOI:10.1155/2008/381243]" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0022325 name: entorhinal cortex layer 5 def: "Layer of entorhinal cortex lying superficial to layer 6 and deep to layer 4 characterized by large pyramidal neurons that are darkly stained in Nissl preparations (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:58] subset: defined_by_cytoarchitecture synonym: "entorhinal cortex layer V" EXACT [DOI:10.1155/2008/381243] xref: NLX:58 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022326 name: molecular layer of dorsal cochlear nucleus synonym: "dorsal cochlear nucleus molecular layer" RELATED [NLX:89] synonym: "MoC" RELATED OMO:0003000 [] xref: NLX:89 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0002829 {source="nlx"} ! dorsal cochlear nucleus [Term] id: UBERON:0022327 name: entorhinal cortex layer 3 alt_id: UBERON:0032288 def: "Layer of the entorhinal cortex lying superficial to layer 4and deep to layer 2. It is characterized by cells of various sizes and shapes with a predominance of pyramidal cells (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:93650] subset: defined_by_cytoarchitecture synonym: "entorhinal cortex layer III" RELATED [NLX:93650] synonym: "entorhinal cortex, pyramidal layer" EXACT [NLXANAT:20090702] synonym: "layer 3 of entorhinal cortex" RELATED [NLX:93650] synonym: "pyramidal layer of entorhinal cortex" EXACT [NLXANAT:20090702] synonym: "pyramidal layer of entorhinal cortex" RELATED [DOI:10.1155/2008/381243] xref: NLX:93650 xref: NLXANAT:20090702 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022329 name: entorhinal cortex layer 6 def: "Layer of entorhinal cortex lying superficial to the cerebral white matter and deep to layer 5 characterized by cells of various shapes and sizes (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:98] comment: This layer is delineated by the white matter, multiple layers can be distinguished, more in particular in primates[DOI:10.1155/2008/381243] subset: defined_by_cytoarchitecture synonym: "entorhinal cortex layer VI" EXACT [DOI:10.1155/2008/381243, NLX:98] synonym: "layer 6 region of entorhinal cortex" RELATED [NLX:98] xref: NLX:98 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022336 name: entorhinal cortex layer 1 def: "Layer of the entorhinal cortex that is most superficial, continuous with layer 1 of adjacent neocortex and the molecular layer of the subiculum, lying deep to the pial layer and superficial to layer 2. It is relatively acellular consisting mostly of fibers running transversely relative to the cortical surface (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090820] subset: defined_by_cytoarchitecture synonym: "EC layer 1" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer I" RELATED [NLXANAT:090820] synonym: "entorhinal cortex molecular layer" RELATED [NLXANAT:090820] synonym: "layer I of entorhinal cortex" RELATED [NLXANAT:090820] synonym: "molecular layer of entorhinal cortex" EXACT [DOI:10.1155/2008/381243, NLXANAT:090820, NLXANAT:20090701] synonym: "superficial plexiform layer of entorhinal cortex" EXACT [DOI:10.1155/2008/381243] xref: NLXANAT:090820 xref: NLXANAT:20090701 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex property_value: external_ontology_notes "the two NIFSTD classes appear to refer to the same structure[DOI:10.1155/2008/381243]" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0022337 name: entorhinal cortex layer 2 def: "Layer of the entorhinal cortex lying superficial to layer 3 and deep to layer 1. It is characterized by medium-to large sized stellate cells that are grouped into prominent clusters, particularly in the rostral entorhinal cortex (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090821] synonym: "EC layer 2" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer II" RELATED [NLXANAT:090821] synonym: "layer 2 of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "layer II of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "outermost cell layer of entorhinal cortex" RELATED [DOI:10.1155/2008/381243] xref: NLXANAT:090821 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022340 name: piriform cortex layer 2a def: "Superficial region of layer 2 of the piriform cortex characterized by a less dense packing of cells and a concentration of semilunar cell bodies." [NLXANAT:091007] subset: defined_by_cytoarchitecture synonym: "layer 2a of piriform cortex" RELATED [NLXANAT:091007] synonym: "layer IIa of piriform cortex" RELATED [NLXANAT:091007] synonym: "piriform cortex layer IIa" RELATED [NLXANAT:091007] xref: NLXANAT:091007 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0014280 {source="nlx"} ! piriform cortex layer 2 [Term] id: UBERON:0022341 name: piriform cortex layer 2b def: "Deeper of two subdivisions of piriform layer 2 characterized by more densely packed cell bodies dominated by pyramidal cell bodies." [NLXANAT:091008] subset: defined_by_cytoarchitecture xref: NLXANAT:091008 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0014280 {source="nlx"} ! piriform cortex layer 2 [Term] id: UBERON:0022346 name: dentate gyrus molecular layer middle synonym: "DG middle stratum moleculare" RELATED [NLXANAT:1008003] synonym: "middle layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008003] xref: FMA:277810 xref: NLXANAT:1008003 is_a: UBERON:0002304 ! layer of dentate gyrus relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular layer [Term] id: UBERON:0022347 name: dentate gyrus molecular layer inner def: "Inner third of the dentate gyrus." [NLXANAT:1008004] synonym: "DG inner stratum moleculare" RELATED [NLXANAT:1008004] synonym: "inner layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008004] xref: FMA:277812 xref: NLXANAT:1008004 is_a: UBERON:0002304 ! layer of dentate gyrus relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular layer [Term] id: UBERON:0022348 name: dentate gyrus granule cell layer inner blade synonym: "enclosed blade of stratum granulare" RELATED [NLXANAT:1008005] synonym: "extrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008005] synonym: "extrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008005] synonym: "inner blade of dentate gyrus granule cell layer" RELATED [NLXANAT:1008005] synonym: "inner blade of stratum granulare" RELATED [NLXANAT:1008005] xref: NLXANAT:1008005 is_a: UBERON:0002304 ! layer of dentate gyrus relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell layer [Term] id: UBERON:0022349 name: dentate gyrus granule cell layer outer blade synonym: "exposed blade of stratum granulare" RELATED [NLXANAT:1008006] synonym: "infrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008006] synonym: "infrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008006] synonym: "outer blade of dentate gyrus granule cell layer" RELATED [NLXANAT:1008006] synonym: "outer blade of stratum granulare" RELATED [NLXANAT:1008006] xref: NLXANAT:1008006 is_a: UBERON:0002304 ! layer of dentate gyrus relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell layer [Term] id: UBERON:0022350 name: visceral serous membrane def: "Serous membrane layer that is adjacent to and lines an organ." [http://orcid.org/0000-0002-6601-2165] synonym: "visceral wall of serous membrane" EXACT [FMA:15860] xref: FMA:15860 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000042 ! serous membrane [Term] id: UBERON:0022351 name: parietal serous membrane def: "Serous membrane layer that lines to a body cavity." [http://orcid.org/0000-0002-6601-2165] synonym: "cavity lining" BROAD [MA:0002448] synonym: "parietal wall of serous membrane" EXACT [FMA:15859] xref: FMA:15859 xref: MA:0002448 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000042 ! serous membrane [Term] id: UBERON:0022352 name: medial orbital frontal cortex def: "Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the u2018inflatedu2019 surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine)." [BIRNLEX:1249] synonym: "frontal medial cortex" BROAD [http://orcid.org/0000-0001-6755-0259] synonym: "medial orbitofrontal cortex" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:1249 xref: FMA:273320 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex [Term] id: UBERON:0022353 name: posterior cingulate cortex def: "Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine)." [BIRNLEX:950] synonym: "cingulate gyrus, posterior division" RELATED [http://orcid.org/0000-0001-6755-0259] synonym: "posterior cingular cortex" RELATED [Wikipedia:Posterior_cingulate] synonym: "posterior cingulate" BROAD [Wikipedia:Posterior_cingulate] xref: BIRNLEX:950 xref: BTO:0004250 xref: EFO:0002471 xref: FMA:271593 xref: Wikipedia:Posterior_cingulate is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 {source="NIFSTD"} ! cingulate cortex property_value: editor_note "check relationship to gyrus. See https://github.com/obophenotype/uberon/issues/626" xsd:string [Term] id: UBERON:0022355 name: basal layer of endometrium def: "The layer of endometrial epithelium adjacent to the uterine cavity." [Wikipedia:Endometrium#Histology] subset: human_reference_atlas synonym: "pars basalis of endometrium" EXACT [] synonym: "stratum basalis of endometrium" EXACT [FMA:86492] xref: FMA:86492 xref: NCIT:C32189 is_a: UBERON:0004811 ! endometrium epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0022356 name: outer layer of endometrium def: "The layer of endometrial epithelium adjacent to the myometrium." [Wikipedia:Endometrium#Histology] subset: human_reference_atlas synonym: "functional layer of endometrium" EXACT [FMA:86493] synonym: "stratum functionalis of endometrium" EXACT [FMA:86493] xref: FMA:86493 xref: NCIT:C32642 is_a: UBERON:0004811 ! endometrium epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0022357 name: mesentery of ileum synonym: "ileal mesentery" EXACT [FMA:14652] synonym: "ileum mesentery" EXACT [FMA:14652] synonym: "mesoileum" EXACT [] xref: FMA:14652 is_a: UBERON:0001170 ! mesentery of small intestine relationship: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0022358 name: placenta blood vessel def: "A blood vessel of the placenta." [GO:0060674] subset: human_reference_atlas synonym: "placental vessel" BROAD [] xref: SCTID:280716005 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0022360 name: male mammary gland duct def: "A mammary gland duct that is part of a male organism. This structure typically regresses." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001765 ! mammary duct relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0022361 name: lung field def: "A specific region of the foregut into the area in which the lung will develop." [GOC:dph, GOC:mtg_lung] synonym: "lung field" EXACT [] xref: SCTID:34922002 is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:0003258 ! endoderm of foregut [Term] id: UBERON:0022364 name: occipital fusiform gyrus subset: human_reference_atlas synonym: "FuGo" RELATED OMO:0003000 [DHBA:12152] synonym: "occipital fusiform gyrus (OF)" EXACT [FMA:71033] synonym: "occipitotemporal (fusiform) gyrus, occipital part" EXACT [DHBA:12152] xref: DHBA:12152 xref: FMA:71033 xref: http://neuro.imm.dtu.dk/wiki/Occipital_fusiform_gyrus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: present_in_taxon NCBITaxon:9606 relationship: source_atlas Harvard-Oxford:Atlas property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022367 name: inferior lateral occipital cortex synonym: "lateral occipital cortex, inferior division" EXACT [https://github.com/obophenotype/uberon/issues/630] synonym: "lateral occipital cortex, inferior division (OLI)" EXACT [FMA:71034] xref: FMA:71034 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0006114 ! lateral occipital cortex relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022368 name: superior lateral occipital cortex synonym: "lateral occipital cortex, superior division" EXACT [https://github.com/obophenotype/uberon/issues/630] xref: FMA:71035 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0006114 ! lateral occipital cortex relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022383 name: anterior parahippocampal gyrus def: "The part of the parahippocampal gyrus that includes the perirhinal and entorhinal cortices." [Wikipedia:Parahippocampal_gyrus] subset: human_reference_atlas synonym: "APH" RELATED OMO:0003000 [DHBA:12163] synonym: "parahippocampal gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] xref: DHBA:12163 xref: FMA:71039 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002973 ! parahippocampal gyrus relationship: present_in_taxon NCBITaxon:9606 relationship: source_atlas Harvard-Oxford:Atlas property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022394 name: posterior parahippocampal white matter synonym: "posterior parahippocampal white matter" RELATED [NeuroNames:827] synonym: "substantia medullaris parahippocampalis posterior" RELATED OMO:0003011 [NeuroNames:827] xref: neuronames:827 is_a: UBERON:0016534 ! white matter of temporal lobe is_a: UBERON:0016536 ! white matter of limbic lobe relationship: part_of UBERON:0002657 ! posterior parahippocampal gyrus [Term] id: UBERON:0022395 name: temporal fusiform gyrus synonym: "FuGt" RELATED OMO:0003000 [DHBA:12143] synonym: "occipitotemporal (fusiform) gyrus, temporal part" EXACT [DHBA:12143] xref: DHBA:12143 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022396 name: anterior temporal fusiform gyrus synonym: "occipitotemporal (fusiform) gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022397 name: posterior temporal fusiform gyrus synonym: "occipitotemporal (fusiform) gyrus, posterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022398 name: paracingulate gyrus subset: human_reference_atlas synonym: "PaCG" RELATED OMO:0003000 [DHBA:146034872] synonym: "paracingulate gyrus (PAC)" EXACT [FMA:71037] xref: DHBA:146034872 xref: FMA:71037 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0022420 name: temporal part of superior longitudinal fasciculus synonym: "superior longitudinal fasciculus, temporal division" EXACT [] is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0022246 ! superior longitudinal fasciculus [Term] id: UBERON:0022421 name: pontocerebellar tract def: "The second order neuron fibers of the corticopontocerebellar tracts that cross to the other side of the pons and run within the middle cerebellar peduncles, from the pons to the contralateral cerebellum." [Wikipedia:Pontocerebellar_fibers] synonym: "fibrae pontocerebellaris" EXACT OMO:0003011 [Wikipedia:Pontocerebellar_fibers] synonym: "pncb" RELATED OMO:0003000 [DHBA:12769] synonym: "pontine crossing tract" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pontocerebellar fibers" EXACT [NeuroNames:1345] synonym: "tractus pontocerebellaris" EXACT OMO:0003011 [NeuroNames:1345] xref: DHBA:12769 xref: HBA:265505470 xref: neuronames:1345 xref: SCTID:360457005 xref: Wikipedia:Pontocerebellar_fibers is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002152 {source="DHBA"} ! middle cerebellar peduncle [Term] id: UBERON:0022423 name: sagulum nucleus def: "A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus." [NLX:64080] synonym: "nucleus saguli" EXACT OMO:0003011 [FMA:77492, FMA:TA] synonym: "nucleus sagulum" RELATED OMO:0003011 [NeuroNames:1308, NLX:64080] synonym: "Sag" RELATED OMO:0003000 [HBA:9486] synonym: "sagular nucleus" RELATED [] synonym: "sagulum" RELATED OMO:0003011 [NeuroNames:1308] xref: DHBA:12313 xref: FMA:77492 xref: HBA:9486 xref: neuronames:1308 xref: NLX:64080 is_a: UBERON:0011214 ! nucleus of midbrain tectum [Term] id: UBERON:0022424 name: supragenual nucleus of pontine tegmentum def: "A group of neurons embedded in the pontine central gray of the pontine tegmentum. Located dorsal to the internal genu of the facial nerve, it is found in the human ( Paxinos-2012 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ), and the mouse ( Franklin-2008 ). Functionally it is part of the dorsal pontine gray of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1981] synonym: "SGe" RELATED OMO:0003000 [DHBA:12662] synonym: "supragenual nucleus" EXACT [NeuroNames:1981] xref: DHBA:12662 xref: DMBA:17190 xref: neuronames:1981 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 {source="DHBA", source="Neuronames-def"} ! pontine tegmentum [Term] id: UBERON:0022425 name: anterior corona radiata synonym: "anterior portion of corona radiata" EXACT [DHBA:15541] synonym: "cor-a" RELATED OMO:0003000 [DHBA:15541] xref: DHBA:15541 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html [Term] id: UBERON:0022426 name: superior corona radiata synonym: "cor-s" RELATED OMO:0003000 [DHBA:15542] synonym: "superior portion of corona radiata" EXACT [DHBA:15542] xref: DHBA:15542 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html [Term] id: UBERON:0022427 name: posterior corona radiata synonym: "cor-p" RELATED OMO:0003000 [DHBA:15543] synonym: "posterior portion of corona radiata" EXACT [DHBA:15543] xref: DHBA:15543 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html [Term] id: UBERON:0022428 name: cingulate cortex cingulum synonym: "cb-cx" RELATED OMO:0003000 [DHBA:15539] synonym: "cingulum (cingulate gyrus)" EXACT [] synonym: "cingulum bundle in cingulate cortex" EXACT [DHBA:15539] synonym: "cingulum bundle in cingulate gyrus" EXACT [] xref: DHBA:15539 is_a: UBERON:0003961 ! cingulum of brain relationship: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0022429 name: temporal cortex cingulum synonym: "cb-tx" RELATED OMO:0003000 [DHBA:15540] synonym: "cingulum (temporal gyrus)" EXACT [] synonym: "cingulum bundle in temporal cortex" EXACT [DHBA:15540] synonym: "cingulum bundle in temporal gyrus" EXACT [] xref: DHBA:15540 is_a: UBERON:0003961 ! cingulum of brain relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0022430 name: hippocampus cortex cingulum synonym: "cingulum (Ammon's horn)" EXACT [] synonym: "cingulum (hippocampus)" EXACT [] synonym: "cingulum bundle in hippocampus" EXACT [] is_a: UBERON:0003961 ! cingulum of brain relationship: part_of UBERON:0001954 ! Ammon's horn [Term] id: UBERON:0022431 name: obsolete simian fossa (macaque) synonym: "fossa simiarum" RELATED OMO:0003011 [BIRNLEX:1616, NeuroNames:46] synonym: "FS" BROAD OMO:0003000 [BIRNLEX:1616] synonym: "simian fossa" EXACT HUMAN_PREFERRED [BIRNLEX:1616] synonym: "simian fossa" RELATED [NeuroNames:46] is_obsolete: true consider: BIRNLEX:1616 consider: neuronames:46 consider: UMLS:C0694579 [Term] id: UBERON:0022434 name: primary superior olive def: "Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus." [BIRNLEX:900] synonym: "superior olive" BROAD INCONSISTENT [BIRNLEX:900] xref: BAMS:SOl xref: BIRNLEX:900 xref: DHBA:12468 xref: HBA:9182 xref: neuronames:570 xref: UMLS:C0228444 is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex property_value: external_ontology_notes "Wikipedia includes Medial nucleus of the trapezoid body. Wikipedia:Superior_olivary_complex#Primary_nuclei" xsd:string property_value: terminology_notes "many sources refer to this simply as the 'superior olive' or the 'superior olivary nucleus'. However, this is confusing as superior olive is sometimes used to denote the full SOC, which includes periolvary nuclei[https://github.com/obophenotype/uberon/issues/631]" xsd:string [Term] id: UBERON:0022437 name: dorsal periolivary nucleus synonym: "DPeO" RELATED OMO:0003000 [DMBA:17260] synonym: "DPO" RELATED OMO:0003000 [] synonym: "nuclei periolivares" BROAD OMO:0003011 [FMA:TA] synonym: "peri-olivary nuclei" BROAD [FMA:72475] xref: DHBA:15561 xref: DMBA:17260 xref: FMA:72475 xref: Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29 is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus [Term] id: UBERON:0022438 name: rostral anterior cingulate cortex def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine)." [BIRNLEX:975] synonym: "rostral anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:975] xref: BIRNLEX:975 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0009835 {source="NIFSTD"} ! anterior cingulate cortex [Term] id: UBERON:0022453 name: olfactory entorhinal cortex def: "A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info." [BIRNLEX:2705] synonym: "EOl" RELATED OMO:0003000 [BIRNLEX:2705] xref: BIRNLEX:2705 xref: neuronames:2274 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002728 {source="NIFSTD"} ! entorhinal cortex [Term] id: UBERON:0022469 name: primary olfactory cortex def: "A group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area." [BIRNLEX:2706] synonym: "primary olfactory areas" RELATED [BIRNLEX:2706] xref: BIRNLEX:2706 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex [Term] id: UBERON:0022480 name: obsolete predominantly gray regional part of pretectal region synonym: "predominantly gray regional part of pretectal region" EXACT HUMAN_PREFERRED [BIRNLEX:1003] is_obsolete: true consider: BIRNLEX:1003 [Term] id: UBERON:0022515 name: obsolete regional part of organ cavity is_obsolete: true consider: BIRNLEX:1039 [Term] id: UBERON:0022534 name: pericalcarine cortex def: "Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1059] synonym: "pericalcarine cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1059] xref: BIRNLEX:1059 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe [Term] id: UBERON:0022543 name: obsolete regional part of solitary nucleus synonym: "regional part of solitary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1068] is_obsolete: true consider: BIRNLEX:1068 [Term] id: UBERON:0022569 name: obsolete regional part of a lobe of the cerebellum synonym: "regional part of a lobe of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:1094] is_obsolete: true consider: BIRNLEX:1094 [Term] id: UBERON:0022575 name: obsolete regional part of body system is_obsolete: true consider: BIRNLEX:11 [Term] id: UBERON:0022598 name: obsolete regional part of peripheral nervous system synonym: "regional part of peripheral nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1122] is_obsolete: true consider: BIRNLEX:1122 [Term] id: UBERON:0022620 name: obsolete regional part of eye is_obsolete: true consider: BIRNLEX:1145 [Term] id: UBERON:0022647 name: obsolete predominantly gray regional part of epithalamus synonym: "predominantly gray regional part of epithalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1174] is_obsolete: true consider: BIRNLEX:1174 [Term] id: UBERON:0022649 name: habenulo-interpeduncular tract of diencephalon synonym: "habenulo-interpeduncular tract of diencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:1176] xref: BIRNLEX:1176 xref: neuronames:461 xref: UMLS:C0228391 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0002138 ! habenulo-interpeduncular tract relationship: part_of UBERON:0003931 {source="ZFA"} ! diencephalic white matter [Term] id: UBERON:0022650 name: obsolete regional part of parietal lobe synonym: "regional part of parietal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1177] is_obsolete: true consider: BIRNLEX:1177 [Term] id: UBERON:0022654 name: obsolete regional part of ear synonym: "regional part of ear" EXACT HUMAN_PREFERRED [BIRNLEX:1181] is_obsolete: true consider: BIRNLEX:1181 [Term] id: UBERON:0022660 name: obsolete regional part of occipital lobe synonym: "regional part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1188] is_obsolete: true consider: BIRNLEX:1188 [Term] id: UBERON:0022665 name: obsolete predominantly gray regional part of lateral hypothalamic region synonym: "predominantly gray regional part of lateral hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1193] is_obsolete: true consider: BIRNLEX:1193 [Term] id: UBERON:0022681 name: obsolete regional part of cerebral peduncle synonym: "regional part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1209] is_obsolete: true consider: BIRNLEX:1209 [Term] id: UBERON:0022695 name: orbital gyri complex synonym: "orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1223] synonym: "orgital_gyri" RELATED [BIRNLEX:1223] xref: BIRNLEX:1223 xref: UMLS:C0152301 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] id: UBERON:0022701 name: obsolete predominantly gray regional part of posterior hypothalamic region synonym: "predominantly gray regional part of posterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1229] is_obsolete: true consider: BIRNLEX:1229 [Term] id: UBERON:0022716 name: lateral orbital frontal cortex def: "Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1244] synonym: "lateral orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1244] xref: BIRNLEX:1244 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex [Term] id: UBERON:0022730 name: transverse frontopolar gyri complex synonym: "transverse frontopolar gyri" RELATED [BIRNLEX:1258] synonym: "transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1258] xref: BIRNLEX:1258 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] id: UBERON:0022732 name: obsolete superficial feature part of midbrain tectum synonym: "superficial feature part of midbrain tectum" EXACT HUMAN_PREFERRED [BIRNLEX:1260] is_obsolete: true consider: BIRNLEX:1260 [Term] id: UBERON:0022740 name: obsolete superficial feature part of pons synonym: "superficial feature part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1268] is_obsolete: true consider: BIRNLEX:1268 [Term] id: UBERON:0022741 name: obsolete regional part of central nervous system synonym: "regional part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1269] is_obsolete: true consider: BIRNLEX:1269 [Term] id: UBERON:0022756 name: obsolete regional part of sacral spinal cord synonym: "regional part of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1284] is_obsolete: true consider: BIRNLEX:1284 [Term] id: UBERON:0022761 name: obsolete superficial feature part of intermediate hypothalamic region synonym: "superficial feature part of intermediate hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1289] is_obsolete: true consider: BIRNLEX:1289 [Term] id: UBERON:0022776 name: composite part spanning multiple base regional parts of brain synonym: "composite part spanning multiple base regional parts of brain" EXACT HUMAN_PREFERRED [BIRNLEX:1304] xref: BIRNLEX:1304 is_a: UBERON:0034925 ! anatomical collection relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0022778 name: obsolete regional part of medial mammillary nucleus synonym: "regional part of medial mammillary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1306] is_obsolete: true consider: BIRNLEX:1306 [Term] id: UBERON:0022783 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone" EXACT HUMAN_PREFERRED [BIRNLEX:1312] xref: BIRNLEX:1312 xref: HBA:4584 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0022791 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1320] xref: BIRNLEX:1320 xref: HBA:4585 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0022822 name: obsolete superficial feature part of diencephalon synonym: "superficial feature part of diencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:1351] is_obsolete: true consider: BIRNLEX:1351 [Term] id: UBERON:0022828 name: obsolete predominantly gray regional part of medullary raphe nuclear complex synonym: "predominantly gray regional part of medullary raphe nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1357] is_obsolete: true consider: BIRNLEX:1357 [Term] id: UBERON:0022877 name: obsolete regional part of oculomotor nuclear complex synonym: "regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1405] is_obsolete: true consider: BIRNLEX:1405 [Term] id: UBERON:0022890 name: obsolete regional part of red nucleus synonym: "regional part of red nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1418] is_obsolete: true consider: BIRNLEX:1418 [Term] id: UBERON:0022895 name: obsolete regional part of habenula synonym: "regional part of habenula" EXACT HUMAN_PREFERRED [BIRNLEX:1423] is_obsolete: true consider: BIRNLEX:1423 [Term] id: UBERON:0022937 name: obsolete predominantly gray regional part of midbrain tegmentum synonym: "predominantly gray regional part of midbrain tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1465] is_obsolete: true consider: BIRNLEX:1465 [Term] id: UBERON:0022941 name: dorsal nerve root of sacral spinal cord synonym: "dorsal nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1469] synonym: "posterior nerve root of sacral spinal cord" RELATED [BIRNLEX:1469] xref: BIRNLEX:1469 is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve [Term] id: UBERON:0022943 name: reticulospinal tract def: "The reticulospinal tract (or anterior reticulospinal tract) is an extrapyramidal motor tract which travels from the reticular formation." [Wikipedia:Reticulospinal_tract] synonym: "reticulospinal tract" EXACT HUMAN_PREFERRED [BIRNLEX:1471] xref: BIRNLEX:1471 xref: neuronames:805 xref: UMLS:C0175558 xref: Wikipedia:Reticulospinal_tract is_a: UBERON:0001018 {source="NIFSTD"} ! axon tract relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter [Term] id: UBERON:0022944 name: obsolete predominantly white regional part of midbrain tegmentum synonym: "predominantly white regional part of midbrain tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1472] is_obsolete: true consider: BIRNLEX:1472 [Term] id: UBERON:0022957 name: obsolete regional part of midbrain reticular formation synonym: "regional part of midbrain reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1485] is_obsolete: true consider: BIRNLEX:1485 [Term] id: UBERON:0022976 name: obsolete regional part of cervical spinal cord synonym: "regional part of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1505] is_obsolete: true consider: BIRNLEX:1505 [Term] id: UBERON:0022988 name: obsolete regional part of thalamus synonym: "regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1517] is_obsolete: true consider: BIRNLEX:1517 [Term] id: UBERON:0022997 name: obsolete superficial feature part of medulla oblongata synonym: "superficial feature part of medulla oblongata" EXACT HUMAN_PREFERRED [BIRNLEX:1526] is_obsolete: true consider: BIRNLEX:1526 [Term] id: UBERON:0023007 name: obsolete predominantly white regional part of posterior hypothalamic region synonym: "predominantly white regional part of posterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1536] is_obsolete: true consider: BIRNLEX:1536 [Term] id: UBERON:0023013 name: obsolete superficial feature part of posterior hypothalamic region synonym: "superficial feature part of posterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1542] is_obsolete: true consider: BIRNLEX:1542 [Term] id: UBERON:0023020 name: obsolete predominantly white regional part of septum pellucidum synonym: "predominantly white regional part of septum pellucidum" EXACT HUMAN_PREFERRED [BIRNLEX:1549] is_obsolete: true consider: BIRNLEX:1549 [Term] id: UBERON:0023044 name: obsolete regional part of cerebral white matter synonym: "regional part of cerebral white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1573] is_obsolete: true consider: BIRNLEX:1573 [Term] id: UBERON:0023047 name: obsolete regional part of hypophysis synonym: "regional part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1576] is_obsolete: true consider: BIRNLEX:1576 [Term] id: UBERON:0023074 name: obsolete regional part of lumbar spinal cord synonym: "regional part of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1602] is_obsolete: true consider: BIRNLEX:1602 [Term] id: UBERON:0023092 name: obsolete predominantly white regional part of epithalamus synonym: "predominantly white regional part of epithalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1620] is_obsolete: true consider: BIRNLEX:1620 [Term] id: UBERON:0023094 name: posterodorsal nucleus of medial geniculate body synonym: "nucleus corporis geniculati medialis, pars posterodorsalis" RELATED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate complex" RELATED [BIRNLEX:1622] xref: BIRNLEX:1622 xref: HBA:4447 xref: neuronames:851 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body [Term] id: UBERON:0023097 name: obsolete regional part of temporal lobe synonym: "regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1625] is_obsolete: true consider: BIRNLEX:1625 [Term] id: UBERON:0023102 name: obsolete predominantly gray regional part of intermediate hypothalamic region synonym: "predominantly gray regional part of intermediate hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1630] is_obsolete: true consider: BIRNLEX:1630 [Term] id: UBERON:0023127 name: obsolete predominantly gray regional part of hypothalamus synonym: "predominantly gray regional part of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1656] is_obsolete: true consider: BIRNLEX:1656 [Term] id: UBERON:0023163 name: obsolete regional part of septum synonym: "regional part of septum" EXACT HUMAN_PREFERRED [BIRNLEX:1693] is_obsolete: true consider: BIRNLEX:1693 [Term] id: UBERON:0023255 name: sub-lobar region synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788] xref: BIRNLEX:1788 is_a: UBERON:0016526 {source="NIFSTD"} ! lobe of cerebral hemisphere [Term] id: UBERON:0023294 name: obsolete cytoarchitectural part of cerebral cortex synonym: "cytoarchitectural part of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2546] is_obsolete: true consider: BIRNLEX:2546 [Term] id: UBERON:0023317 name: obsolete regional part of ventral cochlear nucleus synonym: "regional part of ventral cochlear nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2570] is_obsolete: true consider: BIRNLEX:2570 [Term] id: UBERON:0023362 name: obsolete predominantly gray part of medulla oblongata synonym: "predominantly gray part of medulla oblongata" EXACT HUMAN_PREFERRED [BIRNLEX:2633] is_obsolete: true consider: BIRNLEX:2633 [Term] id: UBERON:0023378 name: medullary anterior horn synonym: "cornu anterius medullaris" EXACT OMO:0003011 [FMA:72610, FMA:TA] synonym: "medullary anterior horn" EXACT HUMAN_PREFERRED [BIRNLEX:2649] xref: BIRNLEX:2649 xref: FMA:72610 xref: neuronames:777 xref: UMLS:C0175539 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0023390 name: medial subnucleus of solitary tract synonym: "medial part" RELATED [BIRNLEX:2662] synonym: "medial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2662] synonym: "medial subnucleus of the solitary tract" EXACT [NeuroNames:745] synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:2662] synonym: "solitary nucleus, left, meidal subnucleus" EXACT OMO:0003002 [HBA:9661] synonym: "solitary nucleus, medial subnucleus" EXACT [HBA:9661, http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2662 xref: HBA:9661 xref: neuronames:745 xref: UMLS:C0175521 is_a: UBERON:0009050 ! nucleus of solitary tract relationship: part_of UBERON:0009050 {source="NIFSTD"} ! nucleus of solitary tract [Term] id: UBERON:0023399 name: obsolete regional part of spinal cord dorsal horn synonym: "regional part of spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:2671] is_obsolete: true consider: BIRNLEX:2671 [Term] id: UBERON:0023401 name: obsolete regional part of spinal cord gray commissure synonym: "regional part of spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2675] is_obsolete: true consider: BIRNLEX:2675 [Term] id: UBERON:0023404 name: obsolete regional part of amygdala synonym: "regional part of amygdala" EXACT HUMAN_PREFERRED [BIRNLEX:2678] is_obsolete: true consider: BIRNLEX:2678 [Term] id: UBERON:0023415 name: lateral amygdaloid nucleus, dorsolateral part synonym: "lateral amygdaloid nucleus, dorsolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2689] xref: BIRNLEX:2689 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0023416 name: lateral amygdaloid nucleus, ventrolateral part synonym: "lateral amygdaloid nucleus, ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2690] xref: BIRNLEX:2690 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0023417 name: lateral amygdaloid nucleus, ventromedial part synonym: "lateral amygdaloid nucleus, ventromedial part" EXACT HUMAN_PREFERRED [BIRNLEX:2691] xref: BIRNLEX:2691 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0023443 name: superficial feature part of forebrain synonym: "superficial feature part of forebrain" EXACT HUMAN_PREFERRED [BIRNLEX:4005] xref: BIRNLEX:4005 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0023462 name: superficial feature part of occipital lobe synonym: "superficial feature part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4024] xref: BIRNLEX:4024 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0023536 name: obsolete regional part of tongue synonym: "regional part of tongue" EXACT HUMAN_PREFERRED [BIRNLEX:4098] is_obsolete: true consider: BIRNLEX:4098 [Term] id: UBERON:0023541 name: conical papilla synonym: "conical papilla" EXACT HUMAN_PREFERRED [BIRNLEX:4103] xref: BIRNLEX:4103 xref: UMLS:C0226967 xref: UMLS:C1289183 is_a: UBERON:0001726 {source="NIFSTD"} ! papilla of tongue [Term] id: UBERON:0023547 name: obsolete regional part of stratum pyramidale hippocampi synonym: "regional part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4109] is_obsolete: true consider: BIRNLEX:4109 [Term] id: UBERON:0023552 name: obsolete regional part of stratum oriens synonym: "regional part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4114] is_obsolete: true consider: BIRNLEX:4114 [Term] id: UBERON:0023556 name: obsolete regional part of stratum radiatum synonym: "regional part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4118] is_obsolete: true consider: BIRNLEX:4118 [Term] id: UBERON:0023560 name: obsolete regional part of stratum lacunosum moleculare synonym: "regional part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4122] is_obsolete: true consider: BIRNLEX:4122 [Term] id: UBERON:0023564 name: cytoarchitectural part of dentate gyrus synonym: "cytoarchitectural part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:4126] xref: BIRNLEX:4126 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0023572 name: obsolete regional part of basal nuclear complex synonym: "regional part of basal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:702] is_obsolete: true consider: BIRNLEX:702 [Term] id: UBERON:0023587 name: obsolete predominantly gray regional part of inferior colliculus synonym: "predominantly gray regional part of inferior colliculus" EXACT HUMAN_PREFERRED [BIRNLEX:718] is_obsolete: true consider: BIRNLEX:718 [Term] id: UBERON:0023623 name: ventral nerve root of sacral spinal cord synonym: "anterior nerve root of sacral spinal cord" RELATED [BIRNLEX:755] synonym: "ventral nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:755] xref: BIRNLEX:755 is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve [Term] id: UBERON:0023628 name: obsolete regional part of anterior hypothalamic region synonym: "regional part of anterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:761] is_obsolete: true consider: BIRNLEX:761 [Term] id: UBERON:0023636 name: obsolete regional part of pons synonym: "regional part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:771] is_obsolete: true consider: BIRNLEX:771 [Term] id: UBERON:0023648 name: obsolete regional part of granular layer of cerebellar cortex synonym: "regional part of granular layer of cerebellar cortex" EXACT HUMAN_PREFERRED [BIRNLEX:784] is_obsolete: true consider: BIRNLEX:784 [Term] id: UBERON:0023649 name: obsolete predominantly white regional part of hypothalamus synonym: "predominantly white regional part of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:785] is_obsolete: true consider: BIRNLEX:785 [Term] id: UBERON:0023670 name: obsolete predominantly white regional part of tectum synonym: "predominantly white regional part of tectum" EXACT HUMAN_PREFERRED [BIRNLEX:808] is_obsolete: true consider: BIRNLEX:808 [Term] id: UBERON:0023677 name: obsolete predominantly gray regional part of tectum synonym: "predominantly gray regional part of tectum" EXACT HUMAN_PREFERRED [BIRNLEX:815] is_obsolete: true consider: BIRNLEX:815 [Term] id: UBERON:0023687 name: obsolete regional part of septal nuclear complex synonym: "regional part of septal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:825] is_obsolete: true consider: BIRNLEX:825 [Term] id: UBERON:0023695 name: obsolete superficial feature part of telencephalon synonym: "superficial feature part of telencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:833] is_obsolete: true consider: BIRNLEX:833 [Term] id: UBERON:0023703 name: obsolete regional part of fornix synonym: "regional part of fornix" EXACT HUMAN_PREFERRED [BIRNLEX:842] is_obsolete: true consider: BIRNLEX:842 [Term] id: UBERON:0023740 name: habenulo-interpeduncular tract of midbrain synonym: "habenulo-interpeduncular tract of midbrain" EXACT HUMAN_PREFERRED [BIRNLEX:895] xref: BIRNLEX:895 xref: neuronames:818 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum relationship: part_of UBERON:0002138 ! habenulo-interpeduncular tract relationship: part_of UBERON:0016554 ! white matter of midbrain [Term] id: UBERON:0023752 name: intermediate part of hypophysis synonym: "intermediate lobe of hypophysis" RELATED [BIRNLEX:906] synonym: "intermediate part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:906] synonym: "intermediate region of hypophysis" RELATED [BIRNLEX:906] synonym: "middle lobe of hypophysis" RELATED [BIRNLEX:906] synonym: "pituitary gland, intermediate lobe" RELATED [BIRNLEX:906] xref: BIRNLEX:906 xref: UMLS:C0175321 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002196 {source="NIFSTD"} ! adenohypophysis [Term] id: UBERON:0023783 name: obsolete gross anatomical part of cerebral cortex synonym: "gross anatomical part of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:940] is_obsolete: true consider: BIRNLEX:940 [Term] id: UBERON:0023787 name: subicular complex def: "A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90)." [BIRNLEX:944] subset: human_reference_atlas synonym: "subicular complex" EXACT HUMAN_PREFERRED [BIRNLEX:944] xref: BIRNLEX:944 xref: FMA:275157 xref: neuronames:2027 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0023789 name: obsolete regional part of limbic lobe synonym: "regional part of limbic lobe" EXACT HUMAN_PREFERRED [BIRNLEX:947] is_obsolete: true consider: BIRNLEX:947 [Term] id: UBERON:0023791 name: obsolete regional part of hindbrain synonym: "regional part of hindbrain" EXACT HUMAN_PREFERRED [BIRNLEX:949] is_obsolete: true consider: BIRNLEX:949 [Term] id: UBERON:0023812 name: obsolete regional part of thoracic spinal cord synonym: "regional part of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:972] is_obsolete: true consider: BIRNLEX:972 [Term] id: UBERON:0023824 name: obsolete regional part of frontal lobe synonym: "regional part of frontal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:984] is_obsolete: true consider: BIRNLEX:984 [Term] id: UBERON:0023825 name: obsolete predominantly white regional part of inferior colliculus synonym: "predominantly white regional part of inferior colliculus" EXACT HUMAN_PREFERRED [BIRNLEX:985] is_obsolete: true consider: BIRNLEX:985 [Term] id: UBERON:0023827 name: obsolete cytoarchitectural part of the cerebellum synonym: "cytoarchitectural part of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:987] is_obsolete: true consider: BIRNLEX:987 [Term] id: UBERON:0023836 name: gross anatomical parts of the cerebellum synonym: "gross anatomical parts of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:996] xref: BIRNLEX:996 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0023852 name: temporoparietal junction def: "An area of the brain that locates at the interception of temporal and parietal cortices (at the posterior end of the Sylvian fissure)." [NLX:144255] synonym: "temporoparietal junction" EXACT [NLX:144255] xref: NLX:144255 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex [Term] id: UBERON:0023855 name: commissural nucleus of the solitary tract synonym: "commissural nucleus of the solitary tract" EXACT [NLX:144259] synonym: "commissural nucleus tractus solitarius" RELATED [NLX:144259] xref: NLX:144259 is_a: UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0023859 name: primary somatosensory cortex layer 6 synonym: "primary somatosensory cortex lamina VI" EXACT [NLX:144265] synonym: "primary somatosensory cortex lamina VI" RELATED [NLX:144265] xref: NLX:144265 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0008933 {source="NIFSTD"} ! primary somatosensory cortex [Term] id: UBERON:0023861 name: planum polare def: "A portion of the superior temporal gyrus near the temporal pole in the human." [NLX:144291] subset: human_reference_atlas synonym: "planum polare" EXACT [NLX:144291] xref: HBA:4177 xref: neuronames:2020 xref: NLX:144291 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002769 {source="NIFSTD"} ! superior temporal gyrus relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0023862 name: hippocampal formation of GP94 def: "The combined region of AmmonÃs horn, subicular complex and dentate gyrus; only fields CA1-CA3 of the hippocampus were considered to be part of the HF, field CA4 being included in the hilus of the dentate gyrus[1]." [NLX:144306] synonym: "hippocampal formation of gp94" EXACT [NLX:144306] xref: NLX:144306 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0023865 name: medial ventral tegmental area synonym: "medial ventral tegmental area" EXACT [NLX:22533] xref: NLX:22533 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002691 {source="NIFSTD"} ! ventral tegmental area [Term] id: UBERON:0023867 name: islands of Calleja of olfactory tubercle def: "Part of olfactory tubercle defined by dense aggregations of granule cells." [NLX:50741] synonym: "islands of calleja of olfactory tubercle" EXACT [NLX:50741] synonym: "islets of calleja" RELATED [NLX:50741] xref: NLX:50741 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja relationship: part_of UBERON:0001883 {source="NIFSTD"} ! olfactory tubercle [Term] id: UBERON:0023868 name: isla magna of Calleja def: "Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org)." [NLX:55138] synonym: "insula magna" RELATED [NLX:55138] synonym: "isla magna of calleja" EXACT [NLX:55138] synonym: "large island of calleja" RELATED [NLX:55138] synonym: "major island of Calleja" EXACT [DHBA:10359] xref: DHBA:10359 xref: MBA:489 xref: neuronames:2273 xref: NLX:55138 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja [Term] id: UBERON:0023869 name: obsolete body membrane def: "Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain[NIFSTD]." [NLXANAT:090201] comment: This term was inherited from the migration of NIFSTD-Anatomy to Uberon. Upon consideration the same concept is better represented by existing classes in Uberon such as "membrnous organ". The following comment was inherited from http://uri.neuinfo.org/nif/nifstd/ Not sure this is the correct designation; FMA has "membranous organ" but that doesn't seem quite right either. synonym: "body membrane" EXACT [NLXANAT:090201] is_obsolete: true consider: NLXANAT:090201 consider: UBERON:0000158 [Term] id: UBERON:0023879 name: neural system def: "A set of neural structures that subserve a specific function, e.g., visual system." [NLXANAT:090802] synonym: "neural system" EXACT [NLXANAT:090802] xref: NLXANAT:090802 is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system property_value: editor_note "this class was inherited from NIFSTD as part of the replacement of NIFSTD with Uberon. It may be obsoleted in the future" xsd:string [Term] id: UBERON:0023900 name: piriform cortex layer 1a def: "Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract." [NLXANAT:091004] synonym: "piriform cortex layer 1a" EXACT [NLXANAT:091004] xref: NLXANAT:091004 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0014277 {source="NIFSTD"} ! piriform cortex layer 1 [Term] id: UBERON:0023901 name: piriform cortex layer 1b def: "Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas." [NLXANAT:091005] synonym: "piriform cortex layer 1b" EXACT [NLXANAT:091005] xref: NLXANAT:091005 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0014277 {source="NIFSTD"} ! piriform cortex layer 1 [Term] id: UBERON:0023915 name: obsolete regional part of nose synonym: "regional part of nose" EXACT [NLXANAT:100305] is_obsolete: true consider: NLXANAT:100305 [Term] id: UBERON:0023920 name: basal ganglia of rodent def: "The basal ganglia of the rodent." [NLXANAT:100311] synonym: "basal ganglia of rodent" EXACT [NLXANAT:100311] synonym: "rodent basal ganglia" RELATED [NLXANAT:100311] xref: NLXANAT:100311 is_a: UBERON:0010011 {source="NIFSTD"} ! collection of basal ganglia [Term] id: UBERON:0023927 name: subbrachial nucleus of mouse of Franklin and Paxinos 2008 synonym: "subbrachial nucleus of mouse of franklin and paxinos 2008" EXACT [NLXANAT:1005004] xref: NLXANAT:1005004 is_a: UBERON:0006119 {source="NIFSTD"} ! subbrachial nucleus [Term] id: UBERON:0023928 name: postrhinal cortex of rodent of Burwell et al 1995 def: "Cortical region lying caudal to the perirhinal cortex in the rat. It encompasses the caudal levels of area 35 and the caudal portion of area 36 (ectorhinal cortex). It is bordered medially by agranular retrosplenial cortex and ventrally by the entorhinal cortex (with the exception of the caudomedial portion). The authors note that the ventral portion of the postrhinal cortex in rat may by homologous with the parahippocampal cortex in the monkey." [NLXANAT:1005005] synonym: "postrhinal cortex" RELATED [NLXANAT:1005005] synonym: "postrhinal cortex of rodent" RELATED [NLXANAT:1005005] synonym: "postrhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005005] synonym: "rodent postrhinal cortex" RELATED [NLXANAT:1005005] xref: NLXANAT:1005005 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0023932 name: Sommer's sector def: "Part of hippocampal formation comprising area CA1 and the subiculum (pg 425, Heimer, L. The human brain and spinal cord, Springer-Verlag, 1995)." [NLXANAT:1005009] synonym: "sommer's sector" EXACT [NLXANAT:1005009] synonym: "sommers sector" RELATED [NLXANAT:1005009] xref: NLXANAT:1005009 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 ! hippocampal formation [Term] id: UBERON:0023934 name: olfactory bulb main glomerular layer def: "The glomerular layer of the main olfactory bulb, lying deep to the olfactory nerve layer. It contains the glomeruli, neuropil rich spheroid structures surrounded by a distinctive shell of small neuros and glial cells (Paxinos, the Rat Nervous System, 2nd ed., Academic Press, 1995)." [NLXANAT:1005011] synonym: "olfactory bulb main glomerular layer" EXACT [NLXANAT:1005011] xref: NLXANAT:1005011 is_a: UBERON:0005377 ! olfactory bulb glomerular layer relationship: part_of UBERON:0009951 ! main olfactory bulb [Term] id: UBERON:0023935 name: obsolete telencephalon of primate def: "The telencephalon of the primate." [NLXANAT:1005012] synonym: "primate telencephalon" RELATED [NLXANAT:1005012] synonym: "telencephalon of primate" EXACT [NLXANAT:1005012] is_obsolete: true consider: NLXANAT:1005012 [Term] id: UBERON:0023936 name: perirhinal cortex of Burwell et al 1995 def: "Rostral portion of the parahippocampal cortex." [NLXANAT:1005013] synonym: "perirhinal cortex" RELATED [NLXANAT:1005013] synonym: "perirhinal cortex of burwell et al 1995" EXACT [NLXANAT:1005013] xref: NLXANAT:1005013 is_a: UBERON:0006083 {source="NIFSTD"} ! perirhinal cortex [Term] id: UBERON:0023938 name: obsolete telencephalon of rodent def: "The telencephalon of a rodent." [NLXANAT:1005015] comment: Made obsolete as we do not add taxon-specific classes, consider using a combination of the uberon class and NCBITaxon class synonym: "rodent telencephalon" RELATED [NLXANAT:1005015] synonym: "telencephalon of rodent" EXACT [NLXANAT:1005015] property_value: seeAlso "NCBITaxon:9989" xsd:string is_obsolete: true consider: NLXANAT:1005015 consider: UBERON:0001893 [Term] id: UBERON:0023939 name: obsolete brain of rodent def: "The brain of a rodent." [NLXANAT:1005016] comment: Made obsolete as we do not add taxon-specific classes, consider using a combination of the uberon class and NCBITaxon class synonym: "brain of rodent" EXACT [NLXANAT:1005016] synonym: "rodent brain" RELATED [NLXANAT:1005016] property_value: seeAlso "NCBITaxon:9989" xsd:string is_obsolete: true consider: NLXANAT:1005016 consider: UBERON:0000955 [Term] id: UBERON:0023942 name: obsolete olfactory bulb main of rodent comment: Made obsolete as we do not add taxon-specific classes, consider using a combination of the uberon class and NCBITaxon class synonym: "olfactory bulb main of rodent" EXACT [NLXANAT:1005019] property_value: seeAlso "NCBITaxon:9989" xsd:string is_obsolete: true consider: NLXANAT:1005019 consider: UBERON:0009951 [Term] id: UBERON:0023943 name: molecular system subset: non_informative synonym: "molecular system" EXACT [NLXANAT:1005020] xref: NLXANAT:1005020 is_a: UBERON:0000467 {source="NIFSTD"} ! anatomical system property_value: editor_note "this class was inherited from NIFSTD as part of the replacement of NIFSTD with Uberon. It may be obsoleted in the future" xsd:string [Term] id: UBERON:0023958 name: bed nuclei of the stria terminalis oval nucleus def: "Part of bed nucleus of stria terminalis, comprising a distinct, large, egg-shaped collection of neurons that, together with the juxtacapsular (Ju) and rhomboid (Rh) nuclei, encompass the anterolateral area of the BST (Ju and Swanson, 1989)." [NLXANAT:1005035] synonym: "bed nuclei of the stria terminalis oval nucleus" EXACT [NLXANAT:1005035] xref: NLXANAT:1005035 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] id: UBERON:0023983 name: central cervical spinocerebellar tract def: "Central cervical spinocerebellar tract." [NLXANAT:1010018] synonym: "central cervical spinocerebellar tract" EXACT [NLXANAT:1010018] xref: NLXANAT:1010018 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract [Term] id: UBERON:0023984 name: rostral spinocerebellar tract def: "Originates from cells rostral to Clarke's column and sends uncrossed axons through the lateral funiculus to the cerebellum. It reaches the cerebellum partly through the brachium conjunctivum and partly through the restiform body, terminating bilaterally in the anterior lobe of the cerebellum." [NLXANAT:1010019] synonym: "rostral spinocerebellar tract" EXACT [NLXANAT:1010019] xref: NLXANAT:1010019 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract [Term] id: UBERON:0023998 name: cerebellum hemispheric lobule II synonym: "alar central lobule" RELATED [NLXANAT:20081202] synonym: "central lobule (hII)" RELATED [NLXANAT:20081202] synonym: "hemispheric lobule ii" EXACT [NLXANAT:20081202] synonym: "lobule H II of Larsell" EXACT [FMA:278665] synonym: "lobule II of cerebellar hemisphere" EXACT [FMA:278665] synonym: "lobule II of hemisphere of cerebellum" EXACT [FMA:278665] xref: FMA:278665 xref: NLXANAT:20081202 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe [Term] id: UBERON:0023999 name: cerebellum hemispheric lobule III synonym: "alar central lobule" RELATED [NLXANAT:20081203] synonym: "central lobule (hIII)" RELATED [NLXANAT:20081203] synonym: "hemispheric lobule III" EXACT [NLXANAT:20081203] synonym: "lobule H III of Larsell" EXACT [FMA:278672] synonym: "lobule III of cerbellar hemisphere" EXACT [FMA:278672] synonym: "lobule III of hemisphere of cerebellum" EXACT [FMA:278672] xref: FMA:278672 xref: NLXANAT:20081203 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe [Term] id: UBERON:0024000 name: cerebellum hemispheric lobule IV synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081204] synonym: "culmen lobule (hIV)" RELATED [NLXANAT:20081204] synonym: "hemispheric lobule IV" EXACT [NLXANAT:20081204] synonym: "lobule H IV of Larsell" EXACT [FMA:278683] synonym: "lobule IV of cerebellar hemisphere" EXACT [FMA:278683] synonym: "lobulus anterior" RELATED [NLXANAT:20081204] synonym: "lobulus quadrangularis anterior" RELATED [NLXANAT:20081204] synonym: "quadrangular lobule" RELATED [NLXANAT:20081204] xref: FMA:278683 xref: NLXANAT:20081204 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe [Term] id: UBERON:0024001 name: cerebellum hemispheric lobule V synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081205] synonym: "culmen lobule (hV)" RELATED [NLXANAT:20081205] synonym: "hemispheric lobule V" EXACT [NLXANAT:20081205] synonym: "lobule H V of Larsell" EXACT [FMA:278723] synonym: "lobule V of cerebellar hemisphere" EXACT [FMA:278723] synonym: "lobulus anterior" RELATED [NLXANAT:20081205] synonym: "lobulus quadrangularis anterior" RELATED [NLXANAT:20081205] synonym: "quadrangular lobule" RELATED [NLXANAT:20081205] xref: FMA:278723 xref: NLXANAT:20081205 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe [Term] id: UBERON:0024003 name: cerebellum hemispheric lobule VII synonym: "hemispheric lobule VII" EXACT [NLXANAT:20081207] xref: NLXANAT:20081207 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule [Term] id: UBERON:0024009 name: cerebellum hemispheric lobule X synonym: "flocculus" RELATED [NLXANAT:20081213] synonym: "hemispheric lobule X" EXACT [NLXANAT:20081213] xref: NLXANAT:20081213 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion [Term] id: UBERON:0024037 name: vermis of the flocculonodular lobe of the cerebellum synonym: "flocculonodular vermis" EXACT [UBERON:cjm] synonym: "vermis of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081241] xref: NLXANAT:20081241 is_a: UBERON:0004720 {source="NIFSTD"} ! cerebellar vermis [Term] id: UBERON:0024043 name: rostral portion of the medial accessory olive synonym: "rostral portion of the medial accessory olive" EXACT HUMAN_PREFERRED [NLXANAT:20081247] xref: NLXANAT:20081247 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] id: UBERON:0024045 name: white matter of the cerebellar cortex def: "White matter that lies deep to the granular cell layer of the cerebellar cortex. It contains afferents to the cerebellar cortex and axons that run between the cerebellar cortex and the deep cerebellar nuclei." [NLXANAT:20081249] synonym: "white matter of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081249] xref: NLXANAT:20081249 is_a: UBERON:0019291 ! white matter of metencephalon relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0024046 name: superficial feature part of the cerebellum synonym: "superficial feature part of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081250] xref: NLXANAT:20081250 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0024065 name: obsolete regional part of spinal nerve synonym: "regional part of spinal nerve" EXACT HUMAN_PREFERRED [NLXANAT:20090206] is_obsolete: true consider: NLXANAT:20090206 [Term] id: UBERON:0024073 name: obsolete regional part of nucleus accumbens synonym: "regional part of nucleus accumbens" EXACT [NLXANAT:20090305] is_obsolete: true consider: NLXANAT:20090305 [Term] id: UBERON:0024078 name: principal anterior division of supraoptic nucleus def: "One of two divisions of the supraoptic nucleus observed in mammals, formed by the ascension of the optic chiasm to split the nucleus in two. The principal anterior division consists of a dense cluster of large cells that stain darkly in Nissl preparations adjacent to the optic chiasm, extending as far rostrally to the organum vasculosum of the lamina terminalis and caudally into the posterior hypothalamus." [NLXANAT:20090310] synonym: "principal anterior division of supraoptic nucleus" EXACT [NLXANAT:20090310] xref: NLXANAT:20090310 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0024079 name: tuberal supraoptic nucleus def: "Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm." [NLXANAT:20090311] synonym: "retrochiasmatic subdivision" RELATED [NLXANAT:20090311] synonym: "tuberal supraoptic nucleus" EXACT [NLXANAT:20090311] xref: NLXANAT:20090311 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0001929 {source="NIFSTD"} ! supraoptic nucleus [Term] id: UBERON:0024081 name: obsolete regional part of stratum lucidum synonym: "regional part of stratum lucidum" EXACT [NLXANAT:20090401] is_obsolete: true consider: NLXANAT:20090401 [Term] id: UBERON:0024086 name: obsolete cytoarchitectural part of dorsal tegmental nucleus synonym: "cytoarchitectural part of dorsal tegmental nucleus" EXACT [NLXANAT:20090406] is_obsolete: true consider: NLXANAT:20090406 [Term] id: UBERON:0024090 name: chemoarchitectural part of brain def: "Regional part of an anatomical region that is revealed by the use of a stain that reveals chemoarchitecture." [NLXANAT:20090501] synonym: "chemoarchitectural part" EXACT [NLXANAT:20090501] xref: NLXANAT:20090501 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0024110 name: basis pontis def: "The basis pontis is the anterior portion of the pons." [Wikipedia:Basilar_part_of_pons] synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704] xref: NLXANAT:20090704 xref: Wikipedia:Basilar_part_of_pons is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000988 {source="NIFSTD"} ! pons [Term] id: UBERON:0024125 name: obsolete regional part of adenohypophysis synonym: "regional part of adenohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1004] is_obsolete: true consider: BIRNLEX:1004 [Term] id: UBERON:0024151 name: tegmentum def: "The ventral topographic division of the midbrain; the dorsal topographic division is the tectum. Meckel (1817; see English translation, 1832, vol. 2, p. 467) apparently introduced the term and roughly its definition here for macrodissected adult humans, except he excluded the cerebral peduncle (Tarin, 1753), a white matter tract at the base of the midbrain, which is still common today but is included here. As defined here, tegmentum refers to the whole of the midbrain (Baer, 1837) excluding the tectum but including the pretectal region (Scalia, 1972); see Swanson (2000, pp. 522, 526). Usage of this term is very complex, inconsistent, and illogical; see for example Crosby et al. (1962, pp. 221, 260, 262), Carpenter (1976, p. 367 ff.)." [BIRNLEX:1031] subset: human_reference_atlas synonym: "tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1031] xref: BIRNLEX:1031 xref: Wikipedia:Tegmentum is_a: UBERON:0022776 {source="NIFSTD"} ! composite part spanning multiple base regional parts of brain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0024161 name: obsolete regional part of pontine tegmentum synonym: "regional part of pontine tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1041] is_obsolete: true consider: BIRNLEX:1041 [Term] id: UBERON:0024173 name: obsolete regional part of inner ear synonym: "regional part of inner ear" EXACT HUMAN_PREFERRED [BIRNLEX:1053] is_obsolete: true consider: BIRNLEX:1053 [Term] id: UBERON:0024177 name: obsolete regional part orbital frontal cortex synonym: "regional part orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1058] is_obsolete: true consider: BIRNLEX:1058 [Term] id: UBERON:0024182 name: obsolete superficial feature part of cerebral cortex synonym: "superficial feature part of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1063] is_obsolete: true consider: BIRNLEX:1063 [Term] id: UBERON:0024183 name: inferior transverse frontopolar gyrus synonym: "inferior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1064] xref: BIRNLEX:1064 xref: FMA:274414 xref: neuronames:842 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex [Term] id: UBERON:0024193 name: medial transverse frontopolar gyrus synonym: "medial transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1074] xref: BIRNLEX:1074 xref: neuronames:823 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex [Term] id: UBERON:0024201 name: superior transverse frontopolar gyrus synonym: "superior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1082] xref: BIRNLEX:1082 xref: FMA:274408 xref: neuronames:1 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex [Term] id: UBERON:0024211 name: obsolete predominantly white regional part of cerebellar cortex synonym: "predominantly white regional part of cerebellar cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1092] is_obsolete: true consider: BIRNLEX:1092 [Term] id: UBERON:0024212 name: obsolete predominantly gray regional part of frontal lobe synonym: "predominantly gray regional part of frontal lobe" EXACT [BIRNLEX:1093] is_obsolete: true consider: BIRNLEX:1093 consider: UBERON:0001870 [Term] id: UBERON:0024234 name: obsolete regional part of deep cerebellar nuclear complex synonym: "regional part of deep cerebellar nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1114] is_obsolete: true consider: BIRNLEX:1114 [Term] id: UBERON:0024254 name: obsolete regional part of autonomic nervous system synonym: "regional part of autonomic nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1134] is_obsolete: true consider: BIRNLEX:1134 [Term] id: UBERON:0024285 name: obsolete regional part of basal part of pons synonym: "regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1168] is_obsolete: true consider: BIRNLEX:1168 [Term] id: UBERON:0024314 name: obsolete predominantly gray regional part of parietal lobe synonym: "predominantly gray regional part of parietal lobe" EXACT [BIRNLEX:1198] is_obsolete: true consider: BIRNLEX:1198 consider: UBERON:0016530 [Term] id: UBERON:0024326 name: obsolete predominantly gray regional part of anterior hypothalamic region synonym: "predominantly gray regional part of anterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1210] is_obsolete: true consider: BIRNLEX:1210 [Term] id: UBERON:0024329 name: obsolete predominantly white regional part of cerebral peduncle synonym: "predominantly white regional part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1213] is_obsolete: true consider: BIRNLEX:1213 [Term] id: UBERON:0024335 name: obsolete predominantly white regional part of anterior hypothalamic region synonym: "predominantly white regional part of anterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1219] is_obsolete: true consider: BIRNLEX:1219 [Term] id: UBERON:0024347 name: obsolete regional part of orbital gyri complex synonym: "regional part of orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1231] is_obsolete: true consider: BIRNLEX:1231 [Term] id: UBERON:0024381 name: obsolete regional part of transverse frontopolar gyri complex synonym: "regional part of transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1265] is_obsolete: true consider: BIRNLEX:1265 [Term] id: UBERON:0024382 name: ventral nerve root of lumbar spinal cord synonym: "anterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1266] synonym: "ventral nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1266] xref: BIRNLEX:1266 is_a: UBERON:0009631 {source="NIFSTD"} ! root of lumbar spinal nerve [Term] id: UBERON:0024394 name: obsolete regional part of Parahippocampal gyrus synonym: "regional part of parahippocampal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1278] is_obsolete: true consider: BIRNLEX:1278 [Term] id: UBERON:0024397 name: obsolete regional part of tuberomammillary nucleus synonym: "regional part of tuberomammillary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1281] is_obsolete: true consider: BIRNLEX:1281 [Term] id: UBERON:0024437 name: obsolete predominantly gray regional part of medial mammillary nucleus synonym: "predominantly gray regional part of medial mammillary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1322] is_obsolete: true consider: BIRNLEX:1322 [Term] id: UBERON:0024439 name: obsolete superficial feature part of frontal lobe synonym: "superficial feature part of frontal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1324] is_obsolete: true consider: BIRNLEX:1324 [Term] id: UBERON:0024449 name: obsolete hemispheric parts of the cerebellar cortex synonym: "hemispheric parts of the cerebellar cortex" EXACT [BIRNLEX:1334] is_obsolete: true consider: BIRNLEX:1334 consider: UBERON:0002245 [Term] id: UBERON:0024479 name: obsolete regional part of inferior parietal cortex synonym: "regional part of inferior parietal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1364] is_obsolete: true consider: BIRNLEX:1364 [Term] id: UBERON:0024501 name: obsolete predominantly gray regional part of occipital lobe synonym: "predominantly gray regional part of occipital lobe" EXACT [BIRNLEX:1386] is_obsolete: true consider: BIRNLEX:1386 consider: UBERON:0016540 [Term] id: UBERON:0024518 name: obsolete regional part of neuraxis cavity synonym: "regional part of neuraxis cavity" EXACT HUMAN_PREFERRED [BIRNLEX:1402] is_obsolete: true consider: BIRNLEX:1402 [Term] id: UBERON:0024524 name: obsolete predominantly gray regional part of midbrain reticular formation synonym: "predominantly gray regional part of midbrain reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1408] is_obsolete: true consider: BIRNLEX:1408 [Term] id: UBERON:0024528 name: obsolete predominantly gray regional part of oculomotor nuclear complex synonym: "predominantly gray regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1412] is_obsolete: true consider: BIRNLEX:1412 [Term] id: UBERON:0024541 name: obsolete predominantly gray regional part of red nucleus synonym: "predominantly gray regional part of red nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1425] is_obsolete: true consider: BIRNLEX:1425 [Term] id: UBERON:0024550 name: obsolete predominantly white regional part of red nucleus synonym: "predominantly white regional part of red nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1434] is_obsolete: true consider: BIRNLEX:1434 [Term] id: UBERON:0024559 name: obsolete predominantly gray regional part of habenula synonym: "predominantly gray regional part of habenula" EXACT HUMAN_PREFERRED [BIRNLEX:1443] is_obsolete: true consider: BIRNLEX:1443 [Term] id: UBERON:0024621 name: obsolete regional part of sacral spinal cord white matter synonym: "regional part of sacral spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1506] is_obsolete: true consider: BIRNLEX:1506 [Term] id: UBERON:0024622 name: obsolete predominantly gray regional part of basal nuclear complex synonym: "predominantly gray regional part of basal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1507] is_obsolete: true consider: BIRNLEX:1507 [Term] id: UBERON:0024653 name: obsolete superficial feature part of temporal lobe synonym: "superficial feature part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1538] is_obsolete: true consider: BIRNLEX:1538 [Term] id: UBERON:0024708 name: obsolete superficial feature part of hypophysis synonym: "superficial feature part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1593] is_obsolete: true consider: BIRNLEX:1593 [Term] id: UBERON:0024714 name: obsolete regional part of cingulate gyrus synonym: "regional part of cingulate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1599] is_obsolete: true consider: BIRNLEX:1599 [Term] id: UBERON:0024721 name: obsolete regional part of outer ear synonym: "regional part of outer ear" EXACT HUMAN_PREFERRED [BIRNLEX:1605] is_obsolete: true consider: BIRNLEX:1605 [Term] id: UBERON:0024749 name: obsolete predominantly gray regional part of temporal lobe synonym: "predominantly gray regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1633] is_obsolete: true consider: BIRNLEX:1633 consider: UBERON:0016538 [Term] id: UBERON:0024762 name: obsolete regional part of lumbar spinal cord white matter synonym: "regional part of lumbar spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1647] is_obsolete: true consider: BIRNLEX:1647 [Term] id: UBERON:0024793 name: obsolete predominantly gray regional part of thalamus synonym: "predominantly gray regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1679] is_obsolete: true consider: BIRNLEX:1679 [Term] id: UBERON:0024800 name: obsolete predominantly white regional part of thalamus synonym: "predominantly white regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1686] is_obsolete: true consider: BIRNLEX:1686 [Term] id: UBERON:0024826 name: obsolete regional part of middle ear synonym: "regional part of middle ear" EXACT HUMAN_PREFERRED [BIRNLEX:1713] is_obsolete: true consider: BIRNLEX:1713 [Term] id: UBERON:0024828 name: obsolete regional part of Preoptic area synonym: "regional part of preoptic area" EXACT HUMAN_PREFERRED [BIRNLEX:1715] is_obsolete: true consider: BIRNLEX:1715 [Term] id: UBERON:0024900 name: left sub-lobar region synonym: "left sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1789] xref: BIRNLEX:1789 is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region [Term] id: UBERON:0024901 name: right sub-lobar region synonym: "right sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1790] xref: BIRNLEX:1790 is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region [Term] id: UBERON:0024904 name: obsolete regional part of retina synonym: "regional part of retina" EXACT HUMAN_PREFERRED [BIRNLEX:1793] is_obsolete: true consider: BIRNLEX:1793 [Term] id: UBERON:0024907 name: obsolete hemisphere parts of cerebral cortex synonym: "cerebral hemisphere" RELATED [BIRNLEX:1796] synonym: "hemisphere parts of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1796] is_obsolete: true consider: BIRNLEX:1796 consider: UBERON:0001869 [Term] id: UBERON:0024914 name: circuit part of central nervous system def: "A collection of neuronal components interacting in a functional circuit. A neural circuit is bounded by the nervous sytem regions in which its participating neuronal components are contained (BB)." [BIRNLEX:2513] synonym: "circuit part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2513] xref: BIRNLEX:2513 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0024940 name: ganglion part of peripheral nervous system def: "A spatially aggregated collection of nerve cell body parts in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO)." [BIRNLEX:2548] synonym: "ganglion part of peripheral nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2548] xref: BIRNLEX:2548 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0024946 name: obsolete regional part of cochlear canal synonym: "division of cochlear canal" RELATED [BIRNLEX:2554] synonym: "regional part of cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2554] is_obsolete: true consider: BIRNLEX:2554 consider: UMLS:C0458763 [Term] id: UBERON:0024952 name: obsolete duct part of cochlear canal synonym: "duct part of cochlear canal" EXACT [BIRNLEX:2560] is_obsolete: true consider: BIRNLEX:2560 consider: UBERON:0001855 [Term] id: UBERON:0024962 name: obsolete predominantly gray part of ventral cochlear nucleus synonym: "predominantly gray part of ventral cochlear nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2571] is_obsolete: true consider: BIRNLEX:2571 [Term] id: UBERON:0025033 name: obsolete predominantly gray part of solitary nucleus synonym: "predominantly gray part of solitary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2660] is_obsolete: true consider: BIRNLEX:2660 [Term] id: UBERON:0025067 name: obsolete regional part of corticomedial nuclear complex synonym: "regional part of corticomedial nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2697] is_obsolete: true consider: BIRNLEX:2697 [Term] id: UBERON:0025078 name: obsolete regional part of olfactory cortex synonym: "regional part of olfactory cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2708] is_obsolete: true consider: BIRNLEX:2708 [Term] id: UBERON:0025096 name: superior calcarine sulcus synonym: "sulcus calcarinus superior" RELATED [BIRNLEX:4014] synonym: "superior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4014] synonym: "superior ramus of calcarine fissure" RELATED [BIRNLEX:4014] synonym: "upper calcarine sulcus" RELATED [BIRNLEX:4014] xref: BIRNLEX:4014 xref: neuronames:147 xref: UMLS:C0262333 is_a: UBERON:0019303 ! occipital sulcus [Term] id: UBERON:0025102 name: inferior occipital sulcus synonym: "inferior occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4020] synonym: "sulcus occipitalis inferior" RELATED [BIRNLEX:4020] xref: BIRNLEX:4020 xref: neuronames:144 xref: UMLS:C0262253 is_a: UBERON:0019303 ! occipital sulcus [Term] id: UBERON:0025103 name: inferior calcarine sulcus synonym: "inferior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4021] synonym: "inferior ramus of calcarine fissure" RELATED [BIRNLEX:4021] synonym: "lower calcarine sulcus" RELATED [BIRNLEX:4021] synonym: "sulcus calcarinus inferior" RELATED [BIRNLEX:4021] xref: BIRNLEX:4021 xref: neuronames:148 xref: UMLS:C0262249 is_a: UBERON:0019303 ! occipital sulcus [Term] id: UBERON:0025104 name: ectocalcarine sulcus synonym: "ectocalcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4022] synonym: "external calcarine fissure" RELATED [BIRNLEX:4022] synonym: "external calcarine sulcus" RELATED [BIRNLEX:4022] synonym: "sulcus ectocalcarinus" RELATED [BIRNLEX:4022] xref: BIRNLEX:4022 xref: neuronames:146 xref: UMLS:C0262230 is_a: UBERON:0019303 ! occipital sulcus [Term] id: UBERON:0025116 name: obsolete superficial feature part of parietal cortex synonym: "superficial feature part of parietal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:4034] is_obsolete: true consider: BIRNLEX:4034 [Term] id: UBERON:0025128 name: obsolete regional part of longitudinal fissure synonym: "regional part of longitudinal fissure" EXACT HUMAN_PREFERRED [BIRNLEX:4046] is_obsolete: true consider: BIRNLEX:4046 [Term] id: UBERON:0025147 name: obsolete cytoarchitectural part of occipital lobe synonym: "cytoarchitectural part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4065] is_obsolete: true consider: BIRNLEX:4065 [Term] id: UBERON:0025148 name: obsolete cytoarchitectural part of frontal lobe synonym: "cytoarchitectural part of frontal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4066] is_obsolete: true consider: BIRNLEX:4066 [Term] id: UBERON:0025182 name: obsolete regional part of gustatory epithelium alt_id: UBERON:0025487 synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100] is_obsolete: true consider: BIRNLEX:4100 consider: NIFEXT:13 [Term] id: UBERON:0025236 name: obsolete regional part of cervical spinal cord white matter synonym: "regional part of cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:723] is_obsolete: true consider: BIRNLEX:723 [Term] id: UBERON:0025250 name: obsolete predominantly white regional part of fornix synonym: "predominantly white regional part of fornix" EXACT HUMAN_PREFERRED [BIRNLEX:738] is_obsolete: true consider: BIRNLEX:738 [Term] id: UBERON:0025254 name: obsolete regional part of anterior commissure synonym: "regional part of anterior commissure" EXACT HUMAN_PREFERRED [BIRNLEX:742] is_obsolete: true consider: BIRNLEX:742 [Term] id: UBERON:0025261 name: thalamic fiber tract synonym: "thalamic fiber tracts" EXACT HUMAN_PREFERRED [BIRNLEX:749] xref: BIRNLEX:749 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0025268 name: obsolete regional part of hippocampal formation synonym: "regional part of hippocampal formation" EXACT HUMAN_PREFERRED [BIRNLEX:757] is_obsolete: true consider: BIRNLEX:757 [Term] id: UBERON:0025284 name: obsolete regional part of substantia nigra synonym: "regional part of substantia nigra" EXACT HUMAN_PREFERRED [BIRNLEX:775] is_obsolete: true consider: BIRNLEX:775 [Term] id: UBERON:0025327 name: obsolete regional part of inferior frontal gyrus synonym: "regional part of inferior frontal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:821] is_obsolete: true consider: BIRNLEX:821 [Term] id: UBERON:0025337 name: obsolete predominantly gray regional part of limbic lobe synonym: "predominantly gray regional part of limbic lobe" EXACT [BIRNLEX:831] is_obsolete: true consider: BIRNLEX:831 consider: UBERON:0016542 [Term] id: UBERON:0025338 name: obsolete predominantly gray regional part of septal nuclear complex synonym: "predominantly gray regional part of septal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:832] is_obsolete: true consider: BIRNLEX:832 [Term] id: UBERON:0025409 name: obsolete regional part of neurohypophysis synonym: "regional part of neurohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:921] is_obsolete: true consider: BIRNLEX:921 [Term] id: UBERON:0025418 name: obsolete regional part of cingulate cortex synonym: "regional part of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:930] is_obsolete: true consider: BIRNLEX:930 [Term] id: UBERON:0025444 name: obsolete regional part of cerebellar white matter synonym: "regional part of cerebellar white matter" EXACT HUMAN_PREFERRED [BIRNLEX:959] is_obsolete: true consider: BIRNLEX:959 [Term] id: UBERON:0025473 name: obsolete regional part of thoracic spinal cord gray matter synonym: "regional part of thoracic spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:989] is_obsolete: true consider: BIRNLEX:989 [Term] id: UBERON:0025525 name: motor system def: "The part of the central nervous system that is involved with movement." [Wikipedia:Motor_system] comment: It consists of the pyramidal and extrapyramidal system synonym: "motor system" EXACT [NLXANAT:090805] xref: NLXANAT:090805 is_a: UBERON:0023879 {source="NIFSTD"} ! neural system [Term] id: UBERON:0025533 name: proprioceptive system def: "The sensory system for the sense of proprioception." [NLXANAT:090814] synonym: "proprioceptive system" EXACT [NLXANAT:090814] xref: NLXANAT:090814 is_a: UBERON:0023879 ! neural system [Term] id: UBERON:0025534 name: sensorimotor system synonym: "sensorimotor" BROAD [NLXANAT:090815] xref: NLXANAT:090815 is_a: UBERON:0023879 {source="NIFSTD"} ! neural system [Term] id: UBERON:0025581 name: perirhinal cortex of primate of Burwell et al 1995 def: "Cortical region near the rhinal sulcus in primate encompassing Brodmann's areas 35 and 36." [NLXANAT:1005014] synonym: "perirhinal cortex of primate" RELATED [UBERON:cjm] synonym: "perirhinal cortex of primate of burwell et al 1995" EXACT [NLXANAT:1005014] synonym: "primate perirhinal cortex" RELATED [UBERON:cjm] xref: NLXANAT:1005014 is_a: UBERON:0023936 {source="NIFSTD"} ! perirhinal cortex of Burwell et al 1995 [Term] id: UBERON:0025584 name: perirhinal cortex of rodent of Burwell et al 1995 def: "Cortical region surrounding the posterior rhinal sulcus in the rat, encompassing areas 35 and 36 in the rat. Rostraly, it abuts the posterior insular cortex." [NLXANAT:1005017] synonym: "perirhinal cortex of rodent" RELATED [NLXANAT:1005017] synonym: "perirhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005017] synonym: "rodent perirhinal cortex" RELATED [NLXANAT:1005017] xref: NLXANAT:1005017 is_a: UBERON:0023936 {source="NIFSTD"} ! perirhinal cortex of Burwell et al 1995 [Term] id: UBERON:0025588 name: histaminergic system def: "Any molecule, protein, cell, tissue or organ that is related to histamine." [NLXANAT:1005021] synonym: "histaminergic system" EXACT [NLXANAT:1005021] xref: NLXANAT:1005021 is_a: UBERON:0023943 ! molecular system [Term] id: UBERON:0025589 name: catecholamine system def: "Any molecule, protein, cell, tissue or organ that is related to the catecholamines." [NLXANAT:1005022] synonym: "catecholamine system" EXACT [NLXANAT:1005022] synonym: "catecholaminergic system" RELATED [NLXANAT:1005022] xref: NLXANAT:1005022 is_a: UBERON:0023943 ! molecular system [Term] id: UBERON:0025591 name: gABAergic system def: "Any molecule, protein, cell, tissue or organ that is related to GABA." [NLXANAT:1005024] synonym: "gabaergic system" EXACT [NLXANAT:1005024] xref: NLXANAT:1005024 is_a: UBERON:0023943 ! molecular system [Term] id: UBERON:0025592 name: glutamatergic system def: "Any molecule, protein, cell, tissue or organ that is related to glutamate (when in the role of a neurotransmitter)." [NLXANAT:1005025] synonym: "glutamatergic system" EXACT [NLXANAT:1005025] xref: NLXANAT:1005025 is_a: UBERON:0023943 ! molecular system [Term] id: UBERON:0025593 name: serotonergic system def: "Any molecule, protein, cell, tissue or organ that is related to serotonin." [NLXANAT:1005026] synonym: "5-ht system" RELATED [NLXANAT:1005026] synonym: "5ht system" RELATED [NLXANAT:1005026] synonym: "serotonergic system" EXACT [NLXANAT:1005026] synonym: "serotonin system" RELATED [NLXANAT:1005026] xref: NLXANAT:1005026 is_a: UBERON:0023943 ! molecular system [Term] id: UBERON:0025595 name: cholinergic system def: "Any molecule, protein, cell, tissue or organ that is related to acetylcholine." [NLXANAT:1005028] synonym: "acetylcholine system" RELATED [NLXANAT:1005028] synonym: "ach system" RELATED [NLXANAT:1005028] synonym: "cholinergic system" EXACT [NLXANAT:1005028] xref: NLXANAT:1005028 is_a: UBERON:0023943 ! molecular system [Term] id: UBERON:0025619 name: obsolete part of neuraxis def: "Part of brain and spinal cord excluding retina." [NLXANAT:1010010] synonym: "part of neuraxis" EXACT [NLXANAT:1010010] is_obsolete: true consider: NLXANAT:1010010 [Term] id: UBERON:0025677 name: paravermis parts of the cerebellar cortex synonym: "paravermis parts of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081237] synonym: "pars intermedia" RELATED [NLXANAT:20081237] xref: NLXANAT:20081237 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0004006 {source="cjm"} ! cerebellum intermediate zone [Term] id: UBERON:0025736 name: chemoarchitectural part of striatum synonym: "chemoarchitectural part of neostriatum" EXACT [NLXANAT:20090502] xref: NLXANAT:20090502 is_a: UBERON:0024090 ! chemoarchitectural part of brain relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:0025744 name: obsolete regional part of dorsal cochlear nucleus synonym: "regional part of dorsal cochlear nucleus" EXACT [NLXANAT:20090510] is_obsolete: true consider: NLXANAT:20090510 [Term] id: UBERON:0025763 name: rostral sulcus synonym: "rostral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1012] xref: BIRNLEX:1012 xref: UMLS:C0262327 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0025764 name: obsolete predominantly gray regional part of adenohypophysis synonym: "predominantly gray regional part of adenohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1013] is_obsolete: true consider: BIRNLEX:1013 [Term] id: UBERON:0025768 name: posterior middle temporal sulcus synonym: "posterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1017] xref: BIRNLEX:1017 xref: neuronames:133 xref: UMLS:C0694594 is_a: UBERON:0014687 ! temporal sulcus [Term] id: UBERON:0025772 name: spur of arcuate sulcus synonym: "spur of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1021] xref: BIRNLEX:1021 xref: neuronames:830 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0034671 ! arcuate sulcus [Term] id: UBERON:0025778 name: obsolete predominantly white regional part of basal part of pons synonym: "predominantly white regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1027] is_obsolete: true consider: BIRNLEX:1027 [Term] id: UBERON:0025811 name: obsolete predominantly gray regional part of pontine tegmentum synonym: "predominantly gray regional part of pontine tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1061] is_obsolete: true consider: BIRNLEX:1061 [Term] id: UBERON:0025827 name: obsolete regional part of pontine reticular formation synonym: "regional part of pontine reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1077] is_obsolete: true consider: BIRNLEX:1077 [Term] id: UBERON:0025828 name: obsolete regional part of superior olivary complex synonym: "regional part of superior olivary complex" EXACT HUMAN_PREFERRED [BIRNLEX:1078] is_obsolete: true consider: BIRNLEX:1078 [Term] id: UBERON:0025829 name: anterior parieto-occipital sulcus synonym: "anterior parieto-occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1079] synonym: "medial parieto-occipital fissure" RELATED [BIRNLEX:1079] synonym: "sulcus parieto-occipitalis anterior" RELATED [BIRNLEX:1079] xref: BIRNLEX:1079 xref: neuronames:53 xref: UMLS:C0262195 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002695 ! parieto-occipital sulcus [Term] id: UBERON:0025848 name: obsolete regional part of anterior nucleus of hypothalamus synonym: "regional part of anterior nucleus of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1098] is_obsolete: true consider: BIRNLEX:1098 [Term] id: UBERON:0025883 name: superior ramus of arcuate sulcus synonym: "superior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1132] xref: BIRNLEX:1132 xref: UMLS:C0262339 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0034671 ! arcuate sulcus [Term] id: UBERON:0025897 name: obsolete regional part of dentate gyrus synonym: "regional part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1147] is_obsolete: true consider: BIRNLEX:1147 [Term] id: UBERON:0025899 name: obsolete predominantly white regional part of hippocampal formation synonym: "predominantly white regional part of hippocampal formation" EXACT HUMAN_PREFERRED [BIRNLEX:1149] is_obsolete: true consider: BIRNLEX:1149 [Term] id: UBERON:0025903 name: principal sulcus def: "Sulcus in the frontal lobe of the macaque. (Brain Info)." [BIRNLEX:1154] synonym: "principal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1154] xref: BIRNLEX:1154 xref: neuronames:66 xref: UMLS:C0262323 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0025927 name: obsolete regional part of enteric nervous system synonym: "regional part of enteric nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1179] is_obsolete: true consider: BIRNLEX:1179 [Term] id: UBERON:0025928 name: obsolete predominantly gray regional part of basal part of pons synonym: "predominantly gray regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1180] is_obsolete: true consider: BIRNLEX:1180 [Term] id: UBERON:0025930 name: obsolete regional part of dentate nucleus synonym: "regional part of dentate nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1182] is_obsolete: true consider: BIRNLEX:1182 [Term] id: UBERON:0025934 name: obsolete regional part of hippocampus proper synonym: "regional part of hippocampus proper" EXACT HUMAN_PREFERRED [BIRNLEX:1186] is_obsolete: true consider: BIRNLEX:1186 [Term] id: UBERON:0025983 name: obsolete predominantly gray regional part of orbital gyri complex synonym: "predominantly gray regional part of orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1236] is_obsolete: true consider: BIRNLEX:1236 [Term] id: UBERON:0025993 name: obsolete predominantly gray medial regional part of thalamus synonym: "predominantly gray medial regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1246] is_obsolete: true consider: BIRNLEX:1246 [Term] id: UBERON:0026000 name: obsolete regional part of cerebral ventricular cavity synonym: "regional part of cerebral ventricular cavity" EXACT HUMAN_PREFERRED [BIRNLEX:1253] synonym: "ventricles of brain" RELATED [BIRNLEX:1253] is_obsolete: true consider: BIRNLEX:1253 [Term] id: UBERON:0026001 name: obsolete regional part of median eminence synonym: "regional part of median eminence" EXACT HUMAN_PREFERRED [BIRNLEX:1254] is_obsolete: true consider: BIRNLEX:1254 [Term] id: UBERON:0026006 name: dorsal nerve root of lumbar spinal cord synonym: "dorsal nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1259] synonym: "posterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1259] xref: BIRNLEX:1259 is_a: UBERON:0009631 {source="NIFSTD"} ! root of lumbar spinal nerve [Term] id: UBERON:0026020 name: obsolete predominantly gray regional part of transverse frontopolar gyri complex synonym: "predominantly gray regional part of transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1273] is_obsolete: true consider: BIRNLEX:1273 [Term] id: UBERON:0026032 name: obsolete predominantly gray regional part of Parahippocampal gyrus synonym: "predominantly gray regional part of parahippocampal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1285] is_obsolete: true consider: BIRNLEX:1285 [Term] id: UBERON:0026040 name: obsolete predominantly gray dorsal regional part of thalamus synonym: "predominantly gray dorsal regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1293] is_obsolete: true consider: BIRNLEX:1293 [Term] id: UBERON:0026048 name: obsolete predominantly white dorsal regional part of thalamus synonym: "predominantly white dorsal regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1301] is_obsolete: true consider: BIRNLEX:1301 [Term] id: UBERON:0026063 name: obsolete regional part of middle frontal gyrus synonym: "regional part of middle frontal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1317] is_obsolete: true consider: BIRNLEX:1317 [Term] id: UBERON:0026079 name: obsolete regional part of suprachiasmatic nucleus synonym: "regional part of paravsuprachiasmatic nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1333] synonym: "regional part of suprachiasmatic nucleus" EXACT [BIRNLEX:1333] is_obsolete: true consider: BIRNLEX:1333 [Term] id: UBERON:0026106 name: obsolete superficial feature part of cerebral peduncle synonym: "superficial feature part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1360] is_obsolete: true consider: BIRNLEX:1360 [Term] id: UBERON:0026113 name: obsolete regional part of neostriatum synonym: "regional part of neostriatum" EXACT HUMAN_PREFERRED [BIRNLEX:1367] is_obsolete: true consider: BIRNLEX:1367 [Term] id: UBERON:0026117 name: obsolete predominantly Gray regional part of inferior parietal cortex synonym: "predominantly gray regional part of inferior parietal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1371] is_obsolete: true consider: BIRNLEX:1371 [Term] id: UBERON:0026137 name: annectant gyrus synonym: "annectant gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1391] xref: BIRNLEX:1391 xref: neuronames:153 xref: UMLS:C0694596 is_a: UBERON:0014640 ! occipital gyrus [Term] id: UBERON:0026153 name: obsolete regional part of paraventricular nucleus of hypothalamus synonym: "regional part of paraventricular nucleus of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1406] is_obsolete: true consider: BIRNLEX:1406 [Term] id: UBERON:0026246 name: sacral spinal cord white matter subset: human_reference_atlas synonym: "sacral spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1500] xref: BIRNLEX:1500 is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0005843 ! sacral spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0026270 name: obsolete predominantly gray anterior regional part of thalamus synonym: "predominantly gray anterior regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1524] is_obsolete: true consider: BIRNLEX:1524 [Term] id: UBERON:0026271 name: obsolete regional part of cervical spinal cord gray matter synonym: "regional part of cervical spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1525] is_obsolete: true consider: BIRNLEX:1525 [Term] id: UBERON:0026293 name: thoracic spinal cord gray commissure subset: human_reference_atlas synonym: "thoracic spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1547] xref: BIRNLEX:1547 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord is_a: UBERON:0014636 ! thoracic spinal cord gray matter relationship: part_of UBERON:0014636 ! thoracic spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0026296 name: obsolete predominantly gray regional part of cingulate gyrus synonym: "predominantly gray regional part of cingulate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1550] is_obsolete: true consider: BIRNLEX:1550 [Term] id: UBERON:0026324 name: obsolete regional part of transverse temporal cortex synonym: "regional part of transverse temporal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1578] is_obsolete: true consider: BIRNLEX:1578 [Term] id: UBERON:0026382 name: inferior ramus of arcuate sulcus synonym: "inferior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1635] xref: BIRNLEX:1635 xref: neuronames:65 xref: UMLS:C0262258 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0034671 ! arcuate sulcus [Term] id: UBERON:0026384 name: lateral orbital sulcus synonym: "lateral orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1637] xref: BIRNLEX:1637 xref: neuronames:81 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026386 name: lumbar spinal cord white matter subset: human_reference_atlas synonym: "lumbar spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1639] xref: BIRNLEX:1639 is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0002792 ! lumbar spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0026391 name: medial orbital sulcus synonym: "medial orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1644] xref: BIRNLEX:1644 xref: neuronames:82 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026445 name: obsolete predominantly gray ventral regional part of thalamus synonym: "predominantly gray ventral regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1701] is_obsolete: true consider: BIRNLEX:1701 [Term] id: UBERON:0026456 name: obsolete predominantly gray posterior regional part of thalamus synonym: "predominantly gray posterior regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1712] is_obsolete: true consider: BIRNLEX:1712 [Term] id: UBERON:0026536 name: obsolete regional part of cochlea synonym: "regional part of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:1794] is_obsolete: true consider: BIRNLEX:1794 consider: UMLS:C0931696 [Term] id: UBERON:0026541 name: dorsomedial subnucleus of solitary tract synonym: "dorsomedial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:1799] synonym: "nucleus of the solitary tract, dorsomedial part" RELATED [BIRNLEX:1799] xref: BIRNLEX:1799 xref: neuronames:744 xref: UMLS:C0175520 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0026546 name: principal neuronal circuit def: "A neuronal circuit bearing a principal projection neuron whose axon extends beyond the region where its soma is located to synapse on the dendrites of cells in other regions of the nervous system (BB)." [BIRNLEX:2514] synonym: "principal neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2514] xref: BIRNLEX:2514 is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system [Term] id: UBERON:0026547 name: intrinsic neuronal circuit def: "A neuronal circuit where all the participating neurons are bounded within a defined and limited region of the nervous system.(BB)." [BIRNLEX:2515] synonym: "intrinsic neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2515] xref: BIRNLEX:2515 is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system [Term] id: UBERON:0026564 name: obsolete regional part of macula synonym: "regional part of macula" EXACT HUMAN_PREFERRED [BIRNLEX:2541] is_obsolete: true consider: BIRNLEX:2541 [Term] id: UBERON:0026584 name: tympanic canal def: "A minute canal that passes from the petrous portion of the temporal bone between the jugular fossa and carotid canal to the floor of the tympanic cavity and transmits the tympanic branch of the glossopharyngeal nerve." [http://www.dictionary.com/browse/tympanic-canal] synonym: "canaliculus tympanicus" EXACT OMO:0003011 [FMA:TA] synonym: "jacobson's canaliculus" EXACT [FMA:56460] synonym: "tympanic canal" EXACT HUMAN_PREFERRED [BIRNLEX:2561] synonym: "tympanic canaliculus" EXACT [FMA:56460, http://www.dictionary.com/browse/tympanic-canal] xref: BIRNLEX:2561 xref: FMA:56460 is_a: UBERON:0013685 {source="FMA"} ! foramen of skull [Term] id: UBERON:0026586 name: vestibular canal def: "The division of the spiral canal of the cochlea lying above the spiral lamina and the vestibular membrane." [http://www.dictionary.com/browse/vestibular-canal] synonym: "canaliculus vestibuli" EXACT OMO:0003011 [FMA:TA] synonym: "vestibular canal" EXACT HUMAN_PREFERRED [BIRNLEX:2563] synonym: "vestibular canaliculus" EXACT [FMA:56451] xref: BIRNLEX:2563 xref: FMA:56451 xref: SCTID:279736007 is_a: UBERON:0013685 {source="FMA"} ! foramen of skull [Term] id: UBERON:0026588 name: obsolete regional part of cochlear duct synonym: "division of cochlear canal" RELATED [BIRNLEX:2565] synonym: "regional part of cochlear duct" EXACT HUMAN_PREFERRED [BIRNLEX:2565] is_obsolete: true consider: BIRNLEX:2565 consider: UMLS:C1186240 [Term] id: UBERON:0026663 name: dorsolateral subnucleus of solitary tract synonym: "dorsolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2659] synonym: "nucleus of the solitary tract, dorsolateral part" RELATED [BIRNLEX:2659] xref: BIRNLEX:2659 xref: neuronames:743 xref: UMLS:C0175519 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0026666 name: parvocellular subnucleus of solitary tract synonym: "parvicellular subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2663] xref: BIRNLEX:2663 xref: neuronames:746 xref: UMLS:C0175522 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0026686 name: obsolete regional part of basolateral nuclear complex synonym: "regional part of basolateral nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2685] is_obsolete: true consider: BIRNLEX:2685 [Term] id: UBERON:0026700 name: obsolete predominantly gray part of corticomedial nuclear complex synonym: "predominantly gray part of corticomedial nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2699] is_obsolete: true consider: BIRNLEX:2699 [Term] id: UBERON:0026719 name: intermediate frontal sulcus synonym: "intermediate frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4006] synonym: "sulcus frontalis intermedius" RELATED [BIRNLEX:4006] xref: BIRNLEX:4006 xref: UMLS:C0228199 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026720 name: obsolete regional part of posterior superior frontal sulcus synonym: "regional part of posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4007] is_obsolete: true consider: BIRNLEX:4007 [Term] id: UBERON:0026721 name: medial precentral sulcus def: "A superficial feature of the frontal lobe that extends from the dorsal surface onto the medial surface of the superior frontal gyrus (Ono-90). (NN)." [BIRNLEX:4008] synonym: "medial precentral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4008] xref: BIRNLEX:4008 xref: neuronames:1610 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026722 name: transverse parietal sulcus def: "A sulcus in the human parietal lobe that branches dorsally from the intraparietal sulcus (Savel'ev-96). (NN)." [BIRNLEX:4009] synonym: "transverse parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4009] xref: BIRNLEX:4009 xref: neuronames:2295 is_a: UBERON:0035927 ! sulcus of parietal lobe [Term] id: UBERON:0026723 name: inferior parietal sulcus synonym: "inferior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4010] xref: BIRNLEX:4010 is_a: UBERON:0035927 ! sulcus of parietal lobe [Term] id: UBERON:0026724 name: superior parietal sulcus def: "A superficial feature of the parietal lobe that extends from the dorsal surface of the superior parietal lobule across the margin of the parietal lobe into the precuneus (Ono-90). (NN)." [BIRNLEX:4011] synonym: "superior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4011] xref: BIRNLEX:4011 xref: neuronames:1611 is_a: UBERON:0035927 ! sulcus of parietal lobe [Term] id: UBERON:0026725 name: angular sulcus def: "A superficial feature of the parietal lobe. It is the portion of the superior temporal sulcus that extends into the angular gyrus (Ono-90). (NN)." [BIRNLEX:4012] synonym: "angular sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4012] xref: BIRNLEX:4012 xref: HBA:9384 xref: neuronames:2386 is_a: UBERON:0014687 ! temporal sulcus is_a: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0002686 {source="NIFSTD"} ! angular gyrus relationship: part_of UBERON:0002734 {source="NIFSTD"} ! superior temporal sulcus [Term] id: UBERON:0026760 name: inferior sagittal sulcus synonym: "inferior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4047] xref: BIRNLEX:4047 is_a: UBERON:0034968 ! sagittal sulcus [Term] id: UBERON:0026761 name: superior sagittal sulcus synonym: "superior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4048] xref: BIRNLEX:4048 is_a: UBERON:0034968 ! sagittal sulcus [Term] id: UBERON:0026762 name: obsolete regional part of calcarine sulcus synonym: "regional part of calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4049] is_obsolete: true consider: BIRNLEX:4049 [Term] id: UBERON:0026765 name: Hadjikhani et al. (1998) visuotopic partition scheme region synonym: "Hadjikhani et al. (1998) visuotopic partition scheme region" EXACT HUMAN_PREFERRED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic areas" RELATED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic parcellation scheme" RELATED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic partition scheme" RELATED [BIRNLEX:4052] xref: BIRNLEX:4052 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026775 name: Tootell and Hadjikhani (2001) LOC/LOP complex def: "Cortical parcel in occipital cortex of human according to Tootell and Hadjikhani 2001 that is activated preferentially by more peripheral stimuli compared to the adjacent lateral occipital central parcel." [BIRNLEX:4062] synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT HUMAN_PREFERRED [BIRNLEX:4062] xref: BIRNLEX:4062 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026776 name: Press, Brewer, Dougherty, Wade and Wandell (2001) visuotopic area V7 synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" EXACT HUMAN_PREFERRED [BIRNLEX:4063] xref: BIRNLEX:4063 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026777 name: Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region synonym: "ongur, price, and ferry (2003) prefrontal cortical areas" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical parcellation scheme" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme region" EXACT HUMAN_PREFERRED [BIRNLEX:4064] xref: BIRNLEX:4064 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026845 name: obsolete predominantly gray regional part of Preoptic area synonym: "predominantly gray regional part of preoptic area" EXACT HUMAN_PREFERRED [BIRNLEX:700] is_obsolete: true consider: BIRNLEX:700 [Term] id: UBERON:0026921 name: obsolete predominantly gray regional part of substantia nigra synonym: "predominantly gray regional part of substantia nigra" EXACT HUMAN_PREFERRED [BIRNLEX:782] is_obsolete: true consider: BIRNLEX:782 [Term] id: UBERON:0026966 name: obsolete predominantly gray regional part of inferior frontal gyrus synonym: "predominantly gray regional part of inferior frontal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:829] is_obsolete: true consider: BIRNLEX:829 [Term] id: UBERON:0026975 name: obsolete predominantly white regional part of anterior commissure synonym: "predominantly white regional part of anterior commissure" EXACT HUMAN_PREFERRED [BIRNLEX:839] is_obsolete: true consider: BIRNLEX:839 [Term] id: UBERON:0026982 name: obsolete predominantly gray midline regional part of thalamus synonym: "predominantly gray midline regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:849] is_obsolete: true consider: BIRNLEX:849 [Term] id: UBERON:0026986 name: obsolete regional part of superior temporal sulcus synonym: "regional part of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:856] is_obsolete: true consider: BIRNLEX:856 [Term] id: UBERON:0027007 name: obsolete regional part of thoracic spinal cord white matter synonym: "regional part of thoracic spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:885] is_obsolete: true consider: BIRNLEX:885 [Term] id: UBERON:0027052 name: obsolete predominantly gray regional part of neurohypophysis synonym: "predominantly gray regional part of neurohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:933] is_obsolete: true consider: BIRNLEX:933 [Term] id: UBERON:0027061 name: isthmus of cingulate cortex synonym: "isthmus of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:943] xref: BIRNLEX:943 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0027076 name: obsolete regional part of Anterior cingulate cortex synonym: "regional part of anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:960] is_obsolete: true consider: BIRNLEX:960 [Term] id: UBERON:0027078 name: obsolete predominantly gray intralaminal regional part of thalamus synonym: "predominantly gray intralaminal regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:962] is_obsolete: true consider: BIRNLEX:962 [Term] id: UBERON:0027094 name: obsolete regional part of cerebellar peduncular complex synonym: "regional part of cerebellar peduncular complex" EXACT HUMAN_PREFERRED [BIRNLEX:979] is_obsolete: true consider: BIRNLEX:979 [Term] id: UBERON:0027103 name: obsolete predominantly gray lateral regional part of thalamus synonym: "predominantly gray lateral regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:988] is_obsolete: true consider: BIRNLEX:988 [Term] id: UBERON:0027109 name: lateral eminence of hypophysis synonym: "lateral eminence" BROAD [] synonym: "lateral eminence of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:994] xref: BIRNLEX:994 xref: neuronames:400 xref: UMLS:C0262266 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000007 {source="NIFSTD"} ! pituitary gland [Term] id: UBERON:0027113 name: anterior middle temporal sulcus synonym: "anterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:998] xref: BIRNLEX:998 xref: neuronames:132 xref: UMLS:C0694593 is_a: UBERON:0014687 ! temporal sulcus [Term] id: UBERON:0027221 name: adrenergic system def: "Any molecule, protein, cell, tissue or organ that is related to epinephrine (also known as adrenaline)." [NLXANAT:1005023] synonym: "adrenergic system" EXACT [NLXANAT:1005023] xref: NLXANAT:1005023 is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system [Term] id: UBERON:0027225 name: noradrenergic system def: "Any molecule, protein, cell, tissue or organ that is related to norepinephrine (also known as noradrenaline)." [NLXANAT:1005027] synonym: "noradrenergic system" EXACT [NLXANAT:1005027] xref: NLXANAT:1005027 is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system [Term] id: UBERON:0027227 name: obsolete cytoarchitectural part of retina synonym: "cytoarchitectural part of retina" EXACT [NLXANAT:1005029] is_obsolete: true consider: NLXANAT:1005029 [Term] id: UBERON:0027239 name: dopaminergic system def: "Any molecule, protein, cell, tissue or organ that is related to dopamine." [NLXANAT:100597] synonym: "dopaminergic system" EXACT [NLXANAT:100597] xref: BTO:0003954 xref: NLXANAT:100597 is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system [Term] id: UBERON:0027243 name: obsolete matrix part of body of caudate nucleus synonym: "matrix part of body of caudate nucleus" EXACT [NLXANAT:1010003] is_obsolete: true consider: NLXANAT:1010003 [Term] id: UBERON:0027244 name: striosomal part of body of caudate nucleus synonym: "striosomal part of body of caudate nucleus" EXACT [NLXANAT:1010004] xref: NLXANAT:1010004 is_a: UBERON:0029004 ! striosomal part of caudate nucleus relationship: part_of UBERON:0002630 ! body of caudate nucleus [Term] id: UBERON:0027245 name: matrix part of head of caudate nucleus def: "Matrix compartment located in the head of the caudate nucleus." [NLXANAT:1010005] synonym: "matrix compartment of head of caudate nucleus" EXACT [] synonym: "matrix part of head of caudate nucleus" EXACT [NLXANAT:1010005] xref: NLXANAT:1010005 is_a: UBERON:0029001 ! matrix compartment of caudate nucleus relationship: part_of UBERON:0002626 ! head of caudate nucleus [Term] id: UBERON:0027246 name: matrix part of tail of caudate nucleus def: "Matrix compartment located in the tail of the caudate nucleus." [NLXANAT:1010006] synonym: "matrix compartment of tail of caudate nucleus" EXACT [] synonym: "matrix part of tail of caudate nucleus" EXACT [NLXANAT:1010006] xref: NLXANAT:1010006 is_a: UBERON:0029001 ! matrix compartment of caudate nucleus relationship: part_of UBERON:0002628 ! tail of caudate nucleus [Term] id: UBERON:0027247 name: obsolete striosomal part of tail of caudate nucleus synonym: "striosomal part of tail of caudate nucleus" EXACT [NLXANAT:1010007] is_obsolete: true consider: NLXANAT:1010007 [Term] id: UBERON:0027285 name: paravermis lobule area subset: human_reference_atlas synonym: "paravermis of cerebellum" EXACT [DHBA:12384] synonym: "regional parts of the paravermal lobules" EXACT HUMAN_PREFERRED [NLXANAT:20081214] xref: DHBA:12384 xref: NLXANAT:20081214 is_a: UBERON:0004003 ! cerebellum hemisphere lobule relationship: part_of UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "consider merging" xsd:string [Term] id: UBERON:0027309 name: paravermis of the posterior lobe of the cerebellum synonym: "paravermis of the posterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081238] synonym: "paravermis, posterior lobe portion" EXACT [DHBA:12386] xref: DHBA:12386 xref: NLXANAT:20081238 is_a: UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex [Term] id: UBERON:0027310 name: paravermis of the anterior lobe of the cerebellum synonym: "paravermis of the anterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081239] synonym: "paravermis, anterior lobe portion" EXACT [DHBA:12385] xref: DHBA:12385 xref: NLXANAT:20081239 is_a: UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex [Term] id: UBERON:0027314 name: obsolete regional Parts of the Interpositus Nucleus synonym: "regional parts of the interpositus nucleus" EXACT HUMAN_PREFERRED [NLXANAT:20081243] is_obsolete: true consider: NLXANAT:20081243 [Term] id: UBERON:0027331 name: flocculonodular lobe, hemisphere portion synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081260] xref: NLXANAT:20081260 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere relationship: part_of UBERON:0003012 ! flocculonodular lobe [Term] id: UBERON:0027333 name: arbor vitae def: "The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae." [NLXANAT:20090101] synonym: "arbor vitae" EXACT HUMAN_PREFERRED [NLXANAT:20090101] xref: neuronames:692 xref: NLXANAT:20090101 is_a: UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0027352 name: obsolete regional part of supraoptic nucleus synonym: "regional part of supraoptic nucleus" EXACT [NLXANAT:20090309] is_obsolete: true consider: NLXANAT:20090309 [Term] id: UBERON:0027368 name: matrix compartment def: "The larger of two chemoarchitectural compartments identified in the neostriatum through differential staining for various biochemical markers. It usually is identified through differentially high staining for acetylcholinesterase and calbinin D28K." [NLXANAT:20090503] synonym: "matrix" RELATED [NLXANAT:20090503] synonym: "matrix compartment" EXACT [NLXANAT:20090503] xref: NLXANAT:20090503 is_a: UBERON:0025736 {source="NIFSTD"} ! chemoarchitectural part of striatum [Term] id: UBERON:0027371 name: striosome def: "One of two compartments identified in the neostriatum, particularly the caudate nucleus, on the basis of differential staining for several biochemical markers such as acetylcholinesterase and calbindin. In individual sections, the striosomes appear as small patches of differentially high or low staining activity. In three dimensions, they form a 3D labyrinth extending throughout the caudate nucleus and in the putamen." [NLXANAT:20090506] synonym: "striosomal compartment" EXACT [NLXANAT:20090506] synonym: "striosomal part" RELATED [] synonym: "striosome" EXACT [NLXANAT:20090506] xref: NLXANAT:20090506 is_a: UBERON:0025736 {source="NIFSTD"} ! chemoarchitectural part of striatum [Term] id: UBERON:0027376 name: obsolete cytoarchitectural part of dorsal cochlear nucleus synonym: "cytoarchitectural part of dorsal cochlear nucleus" EXACT [NLXANAT:20090511] synonym: "granule cell layer of dcn" RELATED [NLXANAT:20090511] synonym: "granule cell layer of dorsal cochlear nucleus" RELATED [NLXANAT:20090511] is_obsolete: true consider: NLXANAT:20090511 [Term] id: UBERON:0027417 name: obsolete predominantly gray regional part of dentate nucleus synonym: "predominantly gray regional part of dentate nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1034] is_obsolete: true consider: BIRNLEX:1034 [Term] id: UBERON:0027453 name: obsolete predominantly gray regional part of pontine reticular formation synonym: "predominantly gray regional part of pontine reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1071] is_obsolete: true consider: BIRNLEX:1071 [Term] id: UBERON:0027513 name: posterior superior frontal sulcus synonym: "posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1130] xref: BIRNLEX:1130 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus [Term] id: UBERON:0027563 name: obsolete predominantly gray regional part of dentate gyrus synonym: "predominantly gray regional part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1183] is_obsolete: true consider: BIRNLEX:1183 [Term] id: UBERON:0027584 name: obsolete regional part of caudate nucleus synonym: "regional part of caudate nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1205] is_obsolete: true consider: BIRNLEX:1205 [Term] id: UBERON:0027600 name: obsolete predominantly gray regional part of neostriatum synonym: "predominantly gray regional part of neostriatum" EXACT HUMAN_PREFERRED [BIRNLEX:1221] is_obsolete: true consider: BIRNLEX:1221 [Term] id: UBERON:0027603 name: obsolete regional part of globus pallidus synonym: "regional part of globus pallidus" EXACT HUMAN_PREFERRED [BIRNLEX:1224] is_obsolete: true consider: BIRNLEX:1224 [Term] id: UBERON:0027604 name: obsolete predominantly gray regional part of ventral nuclear group synonym: "predominantly gray regional part of ventral nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:1225] is_obsolete: true consider: BIRNLEX:1225 [Term] id: UBERON:0027631 name: obsolete predominantly gray regional part of medial dorsal nucleus synonym: "predominantly gray regional part of medial dorsal nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1252] is_obsolete: true consider: BIRNLEX:1252 [Term] id: UBERON:0027649 name: obsolete regional part of lateral ventricle synonym: "regional part of lateral ventricle" EXACT HUMAN_PREFERRED [BIRNLEX:1270] is_obsolete: true consider: BIRNLEX:1270 [Term] id: UBERON:0027651 name: obsolete predominantly gray regional part of median eminence synonym: "predominantly gray regional part of median eminence" EXACT HUMAN_PREFERRED [BIRNLEX:1272] is_obsolete: true consider: BIRNLEX:1272 [Term] id: UBERON:0027665 name: obsolete predominantly gray regional part of metathalamus synonym: "predominantly gray regional part of metathalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1286] is_obsolete: true consider: BIRNLEX:1286 [Term] id: UBERON:0027687 name: obsolete predominantly white dorsal regional part of metathalamus synonym: "predominantly white dorsal regional part of metathalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1308] is_obsolete: true consider: BIRNLEX:1308 [Term] id: UBERON:0027716 name: anterior superior frontal sulcus synonym: "anterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1338] synonym: "anterior superior frontal sulcus" RELATED [NeuroNames:838] synonym: "polar notch" RELATED [NeuroNames:838] synonym: "sulcus frontalis superior anterior" RELATED OMO:0003011 [NeuroNames:838] xref: BIRNLEX:1338 xref: neuronames:838 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus [Term] id: UBERON:0027728 name: obsolete predominantly gray regional part of anterior nuclear group synonym: "predominantly gray regional part of anterior nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:1350] is_obsolete: true consider: BIRNLEX:1350 [Term] id: UBERON:0027748 name: obsolete predominantly gray regional part of superior olivary complex synonym: "predominantly gray regional part of superior olivary complex" EXACT HUMAN_PREFERRED [BIRNLEX:1370] is_obsolete: true consider: BIRNLEX:1370 [Term] id: UBERON:0027755 name: obsolete predominantly white regional part of superior olivary complex synonym: "predominantly white regional part of superior olivary complex" EXACT HUMAN_PREFERRED [BIRNLEX:1377] is_obsolete: true consider: BIRNLEX:1377 [Term] id: UBERON:0027758 name: obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1380] is_obsolete: true consider: BIRNLEX:1380 [Term] id: UBERON:0027760 name: obsolete regional part of superior olive synonym: "regional part of superior olive" EXACT HUMAN_PREFERRED [BIRNLEX:1382] is_obsolete: true consider: BIRNLEX:1382 [Term] id: UBERON:0027768 name: suprachiasmatic nucleus dorsomedial part synonym: "suprachiasmatic nucleus dorsomedial part" EXACT HUMAN_PREFERRED [BIRNLEX:1390] xref: BIRNLEX:1390 xref: HBA:4591 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002034 ! suprachiasmatic nucleus [Term] id: UBERON:0027771 name: suprachiasmatic nucleus ventrolateral part synonym: "suprachiasmatic nucleus ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:1393] xref: BIRNLEX:1393 xref: HBA:4592 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002034 ! suprachiasmatic nucleus [Term] id: UBERON:0027796 name: obsolete regional part of thoracic spinal cord dorsal horn synonym: "regional part of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1417] is_obsolete: true consider: BIRNLEX:1417 [Term] id: UBERON:0027814 name: obsolete regional part of paraventricular nucleus of hypothalamus descending division synonym: "regional part of paraventricular nucleus of hypothalamus descending division" EXACT HUMAN_PREFERRED [BIRNLEX:1435] is_obsolete: true consider: BIRNLEX:1435 [Term] id: UBERON:0027828 name: obsolete predominantly gray regional part of hippocampal formation synonym: "predominantly gray regional part of hippocampal formation" EXACT HUMAN_PREFERRED [BIRNLEX:1449] is_obsolete: true consider: BIRNLEX:1449 [Term] id: UBERON:0027874 name: obsolete regional part of sacral spinal cord gray matter synonym: "regional part of sacral spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1495] is_obsolete: true consider: BIRNLEX:1495 [Term] id: UBERON:0028010 name: obsolete regional part of lumbar spinal cord gray matter synonym: "regional part of lumbar spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1631] is_obsolete: true consider: BIRNLEX:1631 [Term] id: UBERON:0028079 name: obsolete regional part of cervical spinal cord dorsal horn synonym: "regional part of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1703] is_obsolete: true consider: BIRNLEX:1703 [Term] id: UBERON:0028192 name: obsolete regional part of spiral organ of Corti synonym: "regional part of spiral organ of corti" EXACT HUMAN_PREFERRED [BIRNLEX:2530] is_obsolete: true consider: BIRNLEX:2530 [Term] id: UBERON:0028194 name: spiral prominence of cochlear duct def: "A projecting portion of the spiral ligament of the cochlea, bounding the lower edge of the stria vascularis and containing within it a blood vessel, the vas prominens." [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] synonym: "prominentia spiralis ductus cochlearis" EXACT OMO:0003011 [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] synonym: "spiral prominence" BROAD [EMAPA:35799, MA:0003003] synonym: "spiral prominence of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:2532] synonym: "spiral prominence of cochlear duct" EXACT [FMA:77833] xref: BIRNLEX:2532 xref: EMAPA:35799 xref: FMA:77833 xref: MA:0003003 xref: SCTID:279843007 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] id: UBERON:0028200 name: obsolete regional part of fovea synonym: "regional part of fovea" EXACT HUMAN_PREFERRED [BIRNLEX:2545] is_obsolete: true consider: BIRNLEX:2545 [Term] id: UBERON:0028205 name: obsolete regional part of vestibular ganglion synonym: "regional part of vestibular ganglion" EXACT HUMAN_PREFERRED [BIRNLEX:2550] is_obsolete: true consider: BIRNLEX:2550 [Term] id: UBERON:0028314 name: obsolete predominantly gray regional part of amygdala synonym: "predominantly gray regional part of amygdala" EXACT HUMAN_PREFERRED [BIRNLEX:2681] is_obsolete: true consider: BIRNLEX:2681 [Term] id: UBERON:0028317 name: obsolete predominantly gray part of basolateral nuclear complex synonym: "predominantly gray part of basolateral nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2684] is_obsolete: true consider: BIRNLEX:2684 [Term] id: UBERON:0028326 name: obsolete regional part of basal amygdaloid nucleus synonym: "regional part of basal amygdaloid nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2693] is_obsolete: true consider: BIRNLEX:2693 [Term] id: UBERON:0028337 name: obsolete regional part of entorhinal cortex synonym: "regional part of entorhinal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2704] is_obsolete: true consider: BIRNLEX:2704 [Term] id: UBERON:0028395 name: calcarine sulcus (dorsal) synonym: "calcarine sulcus (dorsal)" EXACT HUMAN_PREFERRED [BIRNLEX:4050] xref: BIRNLEX:4050 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002586 ! calcarine sulcus [Term] id: UBERON:0028396 name: calcarine sulcus (ventral) synonym: "calcarine sulcus (ventral)" EXACT HUMAN_PREFERRED [BIRNLEX:4051] xref: BIRNLEX:4051 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002586 ! calcarine sulcus [Term] id: UBERON:0028398 name: Hadjikhani et al. (1998) visuotopic area V1d synonym: "Hadjikhani et al. (1998) visuotopic area v1d" EXACT HUMAN_PREFERRED [BIRNLEX:4053] xref: BIRNLEX:4053 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028399 name: Hadjikhani et al. (1998) visuotopic area V1v synonym: "Hadjikhani et al. (1998) visuotopic area v1v" EXACT HUMAN_PREFERRED [BIRNLEX:4054] xref: BIRNLEX:4054 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028401 name: Hadjikhani et al. (1998) visuotopic area V2v synonym: "Hadjikhani et al. (1998) visuotopic area v2v" EXACT HUMAN_PREFERRED [BIRNLEX:4056] xref: BIRNLEX:4056 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028402 name: Hadjikhani et al. (1998) visuotopic area V3 synonym: "Hadjikhani et al. (1998) visuotopic area v3" EXACT HUMAN_PREFERRED [BIRNLEX:4057] xref: BIRNLEX:4057 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028403 name: Hadjikhani et al. (1998) visuotopic area V3A synonym: "Hadjikhani et al. (1998) visuotopic area v3a" EXACT HUMAN_PREFERRED [BIRNLEX:4058] xref: BIRNLEX:4058 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028404 name: Hadjikhani et al. (1998) visuotopic area VP synonym: "Hadjikhani et al. (1998) visuotopic area vp" EXACT HUMAN_PREFERRED [BIRNLEX:4059] xref: BIRNLEX:4059 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028405 name: Hadjikhani et al. (1998) visuotopic area V4v synonym: "Hadjikhani et al. (1998) visuotopic area v4v" EXACT HUMAN_PREFERRED [BIRNLEX:4060] xref: BIRNLEX:4060 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028406 name: Hadjikhani et al. (1998) visuotopic area V8 synonym: "Hadjikhani et al. (1998) visuotopic area v8" EXACT HUMAN_PREFERRED [BIRNLEX:4061] xref: BIRNLEX:4061 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028412 name: Ongur, Price, and Ferry (2003) area 10p synonym: "ongur, price, and ferry (2003) area 10p" EXACT HUMAN_PREFERRED [BIRNLEX:4067] xref: BIRNLEX:4067 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028413 name: Ongur, Price, and Ferry (2003) area 10r synonym: "ongur, price, and ferry (2003) area 10r" EXACT HUMAN_PREFERRED [BIRNLEX:4068] xref: BIRNLEX:4068 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028414 name: Ongur, Price, and Ferry (2003) area 10o synonym: "ongur, price, and ferry (2003) area 10o" EXACT HUMAN_PREFERRED [BIRNLEX:4069] xref: BIRNLEX:4069 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028415 name: Ongur, Price, and Ferry (2003) area 10m def: "Area 10m is a cortical area in the frontal lobe defined on multiple architectonic criteria." [BIRNLEX:4070] synonym: "ongur, price, and ferry (2003) area 10m" EXACT HUMAN_PREFERRED [BIRNLEX:4070] xref: BIRNLEX:4070 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028416 name: Ongur, Price, and Ferry (2003) area 11m synonym: "ongur, price, and ferry (2003) area 11m" EXACT HUMAN_PREFERRED [BIRNLEX:4071] xref: BIRNLEX:4071 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028417 name: Ongur, Price, and Ferry (2003) area 47s synonym: "ongur, price, and ferry (2003) area 47s" EXACT HUMAN_PREFERRED [BIRNLEX:4072] xref: BIRNLEX:4072 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028418 name: Ongur, Price, and Ferry (2003) area 13b synonym: "ongur, price, and ferry (2003) area 13b" EXACT HUMAN_PREFERRED [BIRNLEX:4073] xref: BIRNLEX:4073 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028419 name: Ongur, Price, and Ferry (2003) area 13a synonym: "ongur, price, and ferry (2003) area 13a" EXACT HUMAN_PREFERRED [BIRNLEX:4074] xref: BIRNLEX:4074 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028420 name: Ongur, Price, and Ferry (2003) area 14r synonym: "ongur, price, and ferry (2003) area 14r" EXACT HUMAN_PREFERRED [BIRNLEX:4075] xref: BIRNLEX:4075 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028421 name: Ongur, Price, and Ferry (2003) area 14c synonym: "ongur, price, and ferry (2003) area 14c" EXACT HUMAN_PREFERRED [BIRNLEX:4076] xref: BIRNLEX:4076 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028422 name: Ongur, Price, and Ferry (2003) area 24 synonym: "ongur, price, and ferry (2003) area 24" EXACT HUMAN_PREFERRED [BIRNLEX:4077] xref: BIRNLEX:4077 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028423 name: Ongur, Price, and Ferry (2003) area 25 synonym: "ongur, price, and ferry (2003) area 25" EXACT HUMAN_PREFERRED [BIRNLEX:4078] xref: BIRNLEX:4078 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028424 name: Ongur, Price, and Ferry (2003) area 32 synonym: "ongur, price, and ferry (2003) area 32" EXACT HUMAN_PREFERRED [BIRNLEX:4079] xref: BIRNLEX:4079 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028425 name: Ongur, Price, and Ferry (2003) area G synonym: "ongur, price, and ferry (2003) area g" EXACT HUMAN_PREFERRED [BIRNLEX:4080] xref: BIRNLEX:4080 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028426 name: Ongur, Price, and Ferry (2003) area PrCO alt_id: UBERON:0028438 synonym: "ongur, price, and ferry (2003) area prco" EXACT HUMAN_PREFERRED [BIRNLEX:4081] xref: BIRNLEX:4081 xref: BIRNLEX:4093 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028427 name: Ongur, Price, and Ferry (2003) area 11l synonym: "ongur, price, and ferry (2003) area 11l" EXACT HUMAN_PREFERRED [BIRNLEX:4082] xref: BIRNLEX:4082 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028428 name: Ongur, Price, and Ferry (2003) area 13m synonym: "ongur, price, and ferry (2003) area 13m" EXACT HUMAN_PREFERRED [BIRNLEX:4083] xref: BIRNLEX:4083 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028429 name: Ongur, Price, and Ferry (2003) area 13l synonym: "ongur, price, and ferry (2003) area 13l" EXACT HUMAN_PREFERRED [BIRNLEX:4084] xref: BIRNLEX:4084 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028430 name: Ongur, Price, and Ferry (2003) area 47l synonym: "ongur, price, and ferry (2003) area 47l" EXACT HUMAN_PREFERRED [BIRNLEX:4085] xref: BIRNLEX:4085 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028431 name: Ongur, Price, and Ferry (2003) area 47m synonym: "ongur, price, and ferry (2003) area 47m" EXACT HUMAN_PREFERRED [BIRNLEX:4086] xref: BIRNLEX:4086 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028432 name: Ongur, Price, and Ferry (2003) area 47r synonym: "ongur, price, and ferry (2003) area 47r" EXACT HUMAN_PREFERRED [BIRNLEX:4087] xref: BIRNLEX:4087 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028433 name: Ongur, Price, and Ferry (2003) area Iam synonym: "ongur, price, and ferry (2003) area iam" EXACT HUMAN_PREFERRED [BIRNLEX:4088] xref: BIRNLEX:4088 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028434 name: Ongur, Price, and Ferry (2003) area Ial def: "Insula agranular lateral area." [BIRNLEX:4089] synonym: "ongur, price, and ferry (2003) area ial" EXACT HUMAN_PREFERRED [BIRNLEX:4089] xref: BIRNLEX:4089 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028435 name: Ongur, Price, and Ferry (2003) area Iai synonym: "ongur, price, and ferry (2003) area iai" EXACT HUMAN_PREFERRED [BIRNLEX:4090] xref: BIRNLEX:4090 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028436 name: Ongur, Price, and Ferry (2003) area 9 synonym: "ongur, price, and ferry (2003) area 9" EXACT HUMAN_PREFERRED [BIRNLEX:4091] xref: BIRNLEX:4091 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028437 name: Ongur, Price, and Ferry (2003) area 10l synonym: "ongur, price, and ferry (2003) area 10l" EXACT HUMAN_PREFERRED [BIRNLEX:4092] xref: BIRNLEX:4092 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028439 name: Ongur, Price, and Ferry (2003) area Iapm synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094] xref: BIRNLEX:4094 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028440 name: Ongur, Price, and Ferry (2003) area AON synonym: "ongur, price, and ferry (2003) area aon" EXACT HUMAN_PREFERRED [BIRNLEX:4095] xref: BIRNLEX:4095 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028544 name: obsolete predominantly gray part of posterior nuclear complex synonym: "predominantly gray part of posterior nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:772] is_obsolete: true consider: BIRNLEX:772 [Term] id: UBERON:0028615 name: obsolete predominantly gray part of Intralaminar nuclear group synonym: "predominantly gray part of intralaminar nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:852] is_obsolete: true consider: BIRNLEX:852 [Term] id: UBERON:0028616 name: obsolete predominantly gray regional part of midline nuclear group synonym: "predominantly gray regional part of midline nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:854] is_obsolete: true consider: BIRNLEX:854 [Term] id: UBERON:0028622 name: banks of superior temporal sulcus def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the superior temporal gyrus and the caudal boundary the middle temporal gyrus. Within the FreeSurfer definition, this reflects primarily the posterior aspect of the superior temporal sulcus (Christine Fennema-Notestine)." [BIRNLEX:862] synonym: "banks of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:862] xref: BIRNLEX:862 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002734 ! superior temporal sulcus [Term] id: UBERON:0028715 name: caudal anterior cingulate cortex def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the genu of the corpus callosum whereas the caudal boundary was established as the first appearance of the mammillary bodies. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was the corpus callosum (Christine Fennema-Notestine)." [BIRNLEX:967] synonym: "caudal anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:967] xref: BIRNLEX:967 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0009835 ! anterior cingulate cortex [Term] id: UBERON:0028725 name: obsolete regional part of substantia nigra pars reticulata synonym: "regional part of substantia nigra pars reticulata" EXACT HUMAN_PREFERRED [BIRNLEX:978] is_obsolete: true consider: BIRNLEX:978 [Term] id: UBERON:0028744 name: obsolete predominantly gray regional part of lateral nuclear group synonym: "predominantly gray regional part of lateral nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:997] is_obsolete: true consider: BIRNLEX:997 [Term] id: UBERON:0028918 name: paravermic lobule II synonym: "paravermic lobule ii" EXACT HUMAN_PREFERRED [NLXANAT:20081215] xref: HBA:4717 xref: NLXANAT:20081215 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028919 name: paravermic lobule III synonym: "paravermic lobule iii" EXACT HUMAN_PREFERRED [NLXANAT:20081216] xref: HBA:4718 xref: NLXANAT:20081216 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028920 name: paravermic lobule IV synonym: "paravermic lobule iv" EXACT HUMAN_PREFERRED [NLXANAT:20081217] xref: HBA:4719 xref: NLXANAT:20081217 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028921 name: paravermic lobule IX synonym: "paravermic lobule ix" EXACT HUMAN_PREFERRED [NLXANAT:20081218] synonym: "ventralis" RELATED [NLXANAT:20081218] xref: HBA:4728 xref: NLXANAT:20081218 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028922 name: paravermic lobule V synonym: "paravermic lobule v" EXACT HUMAN_PREFERRED [NLXANAT:20081219] xref: HBA:4720 xref: NLXANAT:20081219 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028923 name: paravermic lobule VI synonym: "paravermic lobule vi" EXACT HUMAN_PREFERRED [NLXANAT:20081220] xref: HBA:4722 xref: NLXANAT:20081220 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028924 name: paravermic lobule VII synonym: "paravermic lobule vii" EXACT HUMAN_PREFERRED [NLXANAT:20081221] xref: NLXANAT:20081221 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028925 name: paravermic lobule VIII synonym: "paravermic lobule viii" EXACT HUMAN_PREFERRED [NLXANAT:20081222] xref: NLXANAT:20081222 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0029001 name: matrix compartment of caudate nucleus def: "Matrix compartment located in the caudate nucleus." [NLXANAT:20090504] synonym: "matrix compartment of caudate nucleus" EXACT [NLXANAT:20090504] xref: NLXANAT:20090504 is_a: UBERON:0027368 ! matrix compartment relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0029002 name: matrix compartment of putamen synonym: "matrix compartment of putamen" EXACT [NLXANAT:20090505] xref: NLXANAT:20090505 is_a: UBERON:0027368 ! matrix compartment relationship: part_of UBERON:0001874 ! putamen [Term] id: UBERON:0029004 name: striosomal part of caudate nucleus synonym: "striosomal part of caudate nucleus" EXACT [NLXANAT:20090507] xref: NLXANAT:20090507 is_a: UBERON:0027371 ! striosome relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0029005 name: striosomal part of putamen synonym: "striosomal part of putamen" EXACT [NLXANAT:20090508] xref: NLXANAT:20090508 is_a: UBERON:0027371 ! striosome relationship: part_of UBERON:0001874 ! putamen [Term] id: UBERON:0029009 name: granular cell layer of dorsal cochlear nucleus synonym: "granular cell layer of dorsal cochlear nucleus" EXACT [NLXANAT:20090512] xref: NLXANAT:20090512 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002829 ! dorsal cochlear nucleus [Term] id: UBERON:0029140 name: obsolete predominantly gray regional part of ventral lateral nucleus synonym: "predominantly gray regional part of ventral lateral nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1124] is_obsolete: true consider: BIRNLEX:1124 [Term] id: UBERON:0029215 name: obsolete predominantly white dorsal regional part of medial geniculate body synonym: "predominantly white dorsal regional part of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1203] is_obsolete: true consider: BIRNLEX:1203 [Term] id: UBERON:0029396 name: obsolete predominantly gray regional part of superior olive synonym: "predominantly gray regional part of superior olive" EXACT HUMAN_PREFERRED [BIRNLEX:1385] is_obsolete: true consider: BIRNLEX:1385 [Term] id: UBERON:0029415 name: obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1403] is_obsolete: true consider: BIRNLEX:1403 [Term] id: UBERON:0029503 name: sacral spinal cord gray matter subset: human_reference_atlas synonym: "sacral spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1491] xref: BIRNLEX:1491 is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0005843 ! sacral spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0029538 name: sacral spinal cord lateral horn subset: human_reference_atlas synonym: "sacral spinal cord intermediate horn" RELATED [BIRNLEX:1527] synonym: "sacral spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1527] xref: BIRNLEX:1527 is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0029594 name: obsolete predominantly gray regional part of lateral geniculate body synonym: "predominantly gray regional part of lateral geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1583] is_obsolete: true consider: BIRNLEX:1583 [Term] id: UBERON:0029603 name: obsolete predominantly gray regional part of medial geniculate body synonym: "predominantly gray regional part of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1592] is_obsolete: true consider: BIRNLEX:1592 [Term] id: UBERON:0029626 name: cervical spinal cord gray commissure subset: human_reference_atlas synonym: "cervical spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1614] xref: BIRNLEX:1614 is_a: UBERON:0014613 ! cervical spinal cord gray matter is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord relationship: part_of UBERON:0014613 ! cervical spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0029629 name: obsolete predominantly white regional part of globus pallidus synonym: "predominantly white regional part of globus pallidus" EXACT HUMAN_PREFERRED [BIRNLEX:1617] is_obsolete: true consider: BIRNLEX:1617 [Term] id: UBERON:0029636 name: lumbar spinal cord gray matter subset: human_reference_atlas synonym: "lumbar spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1624] xref: BIRNLEX:1624 is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0002792 ! lumbar spinal cord relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0029681 name: obsolete predominantly gray regional part of ventral posterior nucleus synonym: "predominantly gray regional part of ventral posterior nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1671] is_obsolete: true consider: BIRNLEX:1671 [Term] id: UBERON:0029822 name: obsolete regional part of basilar membrane synonym: "regional part of basilar membrane" EXACT HUMAN_PREFERRED [BIRNLEX:2527] is_obsolete: true consider: BIRNLEX:2527 [Term] id: UBERON:0029861 name: obsolete regional part of trapezoid nuclear complex synonym: "regional part of trapezoid nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2574] is_obsolete: true consider: BIRNLEX:2574 [Term] id: UBERON:0029954 name: obsolete regional part of lateral amygdaloid nucleus synonym: "regional part of lateral amygdaloid nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2688] is_obsolete: true consider: BIRNLEX:2688 [Term] id: UBERON:0029960 name: obsolete predominantly gray part of basal amygdaloid nucleus synonym: "predominantly gray part of basal amygdaloid nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2694] is_obsolete: true consider: BIRNLEX:2694 [Term] id: UBERON:0030119 name: obsolete predominantly gray regional part of ventral anterior nucleus synonym: "predominantly gray regional part of ventral anterior nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:709] is_obsolete: true consider: BIRNLEX:709 [Term] id: UBERON:0030242 name: obsolete predominantly gray regional part of pulvinar synonym: "predominantly gray regional part of pulvinar" EXACT HUMAN_PREFERRED [BIRNLEX:841] is_obsolete: true consider: BIRNLEX:841 [Term] id: UBERON:0030276 name: lumbar spinal cord ventral horn subset: human_reference_atlas synonym: "lumbar spinal cord anterior horn" RELATED [BIRNLEX:891] synonym: "lumbar spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:891] xref: BIRNLEX:891 is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0030330 name: obsolete predominantly gray part of rostral intralaminar nuclei synonym: "predominantly gray part of rostral intralaminar nuclei" EXACT HUMAN_PREFERRED [BIRNLEX:948] is_obsolete: true consider: BIRNLEX:948 [Term] id: UBERON:0030649 name: cytoarchitecture of entorhinal cortex synonym: "cytoarchitecture of entorhinal cortex" EXACT HUMAN_PREFERRED [NLXANAT:20090703] xref: NLXANAT:20090703 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002728 ! entorhinal cortex [Term] id: UBERON:0031111 name: sacral spinal cord gray commissure subset: human_reference_atlas synonym: "sacral spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1459] xref: BIRNLEX:1459 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord is_a: UBERON:0029503 ! sacral spinal cord gray matter relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0031196 name: obsolete predominantly gray regional part of globus pallidus synonym: "predominantly gray regional part of globus pallidus" EXACT HUMAN_PREFERRED [BIRNLEX:1545] is_obsolete: true consider: BIRNLEX:1545 [Term] id: UBERON:0031314 name: obsolete predominantly gray regional part of ventral posterolateral nucleus synonym: "predominantly gray regional part of ventral posterolateral nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1664] is_obsolete: true consider: BIRNLEX:1664 [Term] id: UBERON:0031906 name: lumbar spinal cord lateral horn subset: human_reference_atlas synonym: "lumbar spinal cord intermediate horn" RELATED [BIRNLEX:877] synonym: "lumbar spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:877] xref: BIRNLEX:877 is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0031948 name: obsolete predominantly gray regional part of ventral posteromedial nucleus synonym: "predominantly gray regional part of ventral posteromedial nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:924] is_obsolete: true consider: BIRNLEX:924 [Term] id: UBERON:0032748 name: sacral spinal cord ventral horn subset: human_reference_atlas synonym: "sacral spinal cord anterior horn" RELATED [BIRNLEX:1457] synonym: "sacral spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1457] xref: BIRNLEX:1457 is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0033483 name: lumbar spinal cord gray commissure subset: human_reference_atlas synonym: "lumbar spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:802] xref: BIRNLEX:802 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord is_a: UBERON:0029636 ! lumbar spinal cord gray matter relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0033939 name: sacral spinal cord dorsal horn subset: human_reference_atlas synonym: "sacral spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1453] synonym: "sacral spinal cord posterior horn" RELATED [BIRNLEX:1453] xref: BIRNLEX:1453 is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034667 name: obsolete regional part of lumbar spinal cord dorsal horn synonym: "regional part of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:791] is_obsolete: true consider: BIRNLEX:791 [Term] id: UBERON:0034670 name: palatal taste bud def: "A taste bud that is located on the soft palate, in the roof of the mouth." [DOI:10.1523/JNEUROSCI.5142-05.2006, http://orcid.org/0000-0002-6601-2165] synonym: "taste bud of palate" EXACT [] is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0034722 ! mouth roof taste bud relationship: part_of UBERON:0001733 ! soft palate relationship: part_of UBERON:0014453 ! gustatory epithelium of palate property_value: taxon_notes "In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006]" xsd:string [Term] id: UBERON:0034671 name: arcuate sulcus def: "Composite sulcus of the frontal lobe of the macaque. Located on the dorsolateral surface, it consists of the superior ramus of the arcuate sulcus (macaque), the inferior ramus of the arcuate sulcus and the spur of the arcuate sulcus (macaque) (neuronames:2379)." [NLX:153910] synonym: "arcuate sulcus" RELATED [NeuroNames:2379] synonym: "inferior precentral sulcus (Walker)" RELATED [NeuroNames:2379] synonym: "sulcus arcuata" RELATED OMO:0003011 [NeuroNames:2379] synonym: "sulcus arcuatis" RELATED OMO:0003011 [NeuroNames:2379] synonym: "sulcus arcuatus" RELATED OMO:0003011 [NeuroNames:2379] xref: neuronames:2379 xref: NLX:153910 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe relationship: present_in_taxon NCBITaxon:9539 [Term] id: UBERON:0034672 name: lateral eminence of fourth ventricle synonym: "area vestibularis" RELATED OMO:0003011 [NeuroNames:623] synonym: "lateral eminence of fourth ventricle" EXACT [FMA:78478] synonym: "vestibular area" BROAD [FMA:78478] xref: FMA:78478 xref: neuronames:623 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0034673 name: amygdalohippocampal area def: "A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala." [Wikipedia:Amygdalohippocampal_area] subset: human_reference_atlas synonym: "AHA" RELATED OMO:0003000 [DHBA:10377] synonym: "amygdalo-hippocampal area" RELATED [NeuroNames:2028] synonym: "amygdalohippocampal area" RELATED [NeuroNames:2028] synonym: "amygdalohippocampal transition area" RELATED [NeuroNames:2028] synonym: "area amygdalohippocampalis" RELATED OMO:0003011 [NeuroNames:2028] synonym: "area parahippocampalis" RELATED OMO:0003011 [Wikipedia:Amygdalohippocampal_area] synonym: "area periamygdalae caudalis ventralis" RELATED OMO:0003011 [NeuroNames:2028] synonym: "posterior amygdalar nucleus" RELATED [NeuroNames:2028] synonym: "posterior nucleus amygdala" RELATED [NeuroNames:2028] synonym: "posterior nucleus of the amygdala" RELATED [NeuroNames:2028] xref: DHBA:10377 xref: DMBA:15945 xref: EMAPA:35124 xref: FMA:77607 xref: HBA:4330 xref: MA:0002917 xref: neuronames:2028 xref: PBA:10135 xref: Wikipedia:Amygdalohippocampal_area is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0006108 {source="DHBA"} ! corticomedial nuclear complex relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "All authors regard it as occupying the caudal third of the amygdala, which abuts the hippocampal formation. In the human ( Mai-1997 ) and the macaque ( Amaral-1992 ) it is located close to the medial surface of the temporal lobe; it is bounded internally by the posterior cortical amygdalar nucleus and the temporal horn of the lateral ventricle. In the rat ( Swanson-2004 ) and mouse ( Hof-2000 ) it is bounded largely by the posterior cortical amygdalar nucleus and the accessory basal nucleus (known as the basomedial nucleus of the amygdala in rodents); the stria terminalis separates it from the ventricle. According to some authors the amygdalohippocampal area extends anteriorly to occupy the caudal half of the amygdala. These authors divide the area into two or three parts, which in the human ( Olmos-2004 ), the rat ( Paxinos-2009b ), and the mouse ( Franklin-2008 ) are named on the basis of location: anterolateral, posterolateral and posteromedial parts. In the macaque ( Paxinos-2009a ) the rostral portion of the area is divided into two parts on the basis of cellular morphology: magnocellular and parvicellular parts. Some authors refer to the area in rodents as the 'posterior amygdalar nucleus' ( Swanson-2004; Hof-2000 ).[neuronames:2028]" xsd:string [Term] id: UBERON:0034674 name: sulcus of limbic lobe synonym: "intralimbic sulcus" RELATED [NeuroNames:1314] synonym: "LLs" RELATED OMO:0003000 [HBA:9393] xref: HBA:9393 xref: neuronames:1314 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0034676 name: forceps major of corpus callosum synonym: "ccs-ma" RELATED OMO:0003000 [DHBA:12025] synonym: "corpus callosum, forceps major" RELATED OMO:0003011 [NeuroNames:197] synonym: "corpus callosum, posterior forceps (Arnold)" RELATED [NeuroNames:197] synonym: "forceps major" EXACT [FMA:TA] synonym: "forceps major corporis callosi" RELATED OMO:0003011 [NeuroNames:197] synonym: "forceps major of corpus callosum" EXACT [FMA:61949] synonym: "forceps major of corpus callosum" RELATED [NeuroNames:197] synonym: "forceps major of the corpus callosum" RELATED [NeuroNames:197] synonym: "forceps occipitalis" EXACT [FMA:TA] synonym: "forceps occipitalis" RELATED OMO:0003011 [NeuroNames:197] synonym: "major forceps" EXACT [FMA:61949] synonym: "occipital forceps" EXACT [FMA:61949] synonym: "occipital forceps" RELATED [NeuroNames:197] synonym: "posterior forceps" EXACT [FMA:61949] synonym: "posterior forceps" RELATED [NeuroNames:197] synonym: "posterior forceps of corpus callosum" EXACT [FMA:61949] synonym: "posterior forceps of the corpus callosum" RELATED [NeuroNames:197] xref: DHBA:12025 xref: FMA:61949 xref: neuronames:197 xref: SCTID:369201007 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0015708 {source="DHBA"} ! splenium of the corpus callosum [Term] id: UBERON:0034678 name: forceps minor of corpus callosum synonym: "anterior forceps" EXACT [FMA:61944] synonym: "anterior forceps" RELATED [NeuroNames:192] synonym: "anterior forceps of corpus callosum" EXACT [FMA:61944] synonym: "anterior forceps of the corpus callosum" RELATED [NeuroNames:192] synonym: "corpus callosum, anterior forceps" RELATED [NeuroNames:192] synonym: "corpus callosum, anterior forceps (Arnold)" RELATED [NeuroNames:192] synonym: "corpus callosum, forceps minor" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps frontalis" EXACT [FMA:TA] synonym: "forceps frontalis" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor" EXACT [FMA:TA] synonym: "forceps minor" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor corporis callosi" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor of corpus callosum" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor of the corpus callosum" RELATED [NeuroNames:192] synonym: "frontal forceps" EXACT [FMA:61944] synonym: "frontal forceps" RELATED [NeuroNames:192] synonym: "minor forceps" EXACT [FMA:61944] xref: DHBA:12024 xref: FMA:61944 xref: neuronames:192 xref: SCTID:369199005 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0015599 {source="DHBA"} ! genu of corpus callosum [Term] id: UBERON:0034680 name: laryngeal prominence def: "A zone of thyroid cartilage formed by fusion of the two plate-like laminae of the cartilages." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Thyroid_cartilage] synonym: "Adam's apple" EXACT [FMA:55304] synonym: "Adams apple" EXACT [] xref: BTO:0003656 xref: FMA:55304 xref: SCTID:362648003 is_a: UBERON:0034944 {source="FMA"} ! zone of organ relationship: part_of UBERON:0001738 ! thyroid cartilage [Term] id: UBERON:0034681 name: vocal organ def: "Any organ that is the primary organ of vocalization behavior. Examples: The laryngeal vocal cord (humans), the syrinx (birds)." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000062 ! organ [Term] id: UBERON:0034688 name: spermatic fascia xref: SCTID:279652001 is_a: UBERON:0008982 ! fascia [Term] id: UBERON:0034690 name: external spermatic fascia def: "A thin membrane, prolonged downward around the surface of the spermatic cord and testis. It is separated from the dartos tunic by loose areolar tissue. It is derived from the aponeurosis of the abdominal external oblique muscle." [Wikipedia:External_spermatic_fascia] synonym: "intercolumnar fascia" RELATED [Wikipedia:External_spermatic_fascia] synonym: "intercrural fascia" RELATED [Wikipedia:External_spermatic_fascia] synonym: "Webster's fascia" RELATED [Wikipedia:External_spermatic_fascia] xref: FMA:69248 xref: SCTID:279588002 xref: Wikipedia:External_spermatic_fascia is_a: UBERON:0034688 ! spermatic fascia [Term] id: UBERON:0034691 name: internal spermatic fascia synonym: "infundibuliform fascia" RELATED [Wikipedia:Internal_spermatic_fascia] xref: FMA:77299 xref: SCTID:279586003 xref: Wikipedia:Internal_spermatic_fascia is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034688 ! spermatic fascia relationship: part_of UBERON:0001300 ! scrotum [Term] id: UBERON:0034693 name: cremasteric artery def: "The cremasteric artery (external spermatic artery) is a branch of the Inferior epigastric artery which accompanies the spermatic cord, and supplies the Cremaster and other coverings of the cord, anastomosing with the testicular artery (internal spermatic artery in older texts). (In the female, the cremesteric artery is very small and accompanies the round ligament.)." [Wikipedia:Cremasteric_artery] subset: human_reference_atlas synonym: "cremasteric part of inferior epigastric artery" EXACT [FMA:70192] synonym: "external spermatic artery" RELATED [Wikipedia:Cremasteric_artery] xref: FMA:70192 xref: SCTID:279658002 xref: Wikipedia:Cremasteric_artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001354 {source="FMA"} ! inferior epigastric artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034694 name: gubernacular bulb, intra-abdominal part def: "The portion of the gubernacular bulb that is located within the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] synonym: "gubernacular cone" RELATED [ISBN:0123971756] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0012326 ! gubernacular bulb [Term] id: UBERON:0034695 name: gubernacular bulb, extra-abdominal part def: "The portion of the gubernacular bulb that is located external to the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0012326 ! gubernacular bulb [Term] id: UBERON:0034696 name: fold of peritoneum synonym: "peritoneal fold" EXACT [FMA:20610] synonym: "peritoneal outpouching" NARROW [] synonym: "peritoneal pouch" RELATED [] xref: FMA:20610 xref: SCTID:261922008 is_a: UBERON:0002358 ! peritoneum relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0034697 name: inflow tract synonym: "cardiac inflow tract" EXACT [] synonym: "heart inflow tract" EXACT [] synonym: "venous pole" RELATED [PMID:20735616] xref: FMA:14057 is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0034698 name: inflow tract of ventricle synonym: "ventricular inflow tract" EXACT [FMA:13224] xref: FMA:13224 is_a: UBERON:0034697 ! inflow tract [Term] id: UBERON:0034699 name: inflow tract of atrium synonym: "inflow tract of atrium" EXACT [FMA:14140] xref: FMA:14140 is_a: UBERON:0034697 ! inflow tract [Term] id: UBERON:0034703 name: inflow tract of right ventricle synonym: "inflow part of right ventricle" EXACT [FMA:9552] synonym: "main part of right ventricle" EXACT [FMA:9552] synonym: "right ventricle proper" EXACT [FMA:9552] synonym: "vestibule of tricuspid valve" RELATED [FMA:9552] xref: FMA:9552 xref: SCTID:278950004 is_a: UBERON:0034698 ! inflow tract of ventricle relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0034704 name: inflow tract of left ventricle synonym: "inflow part of left ventricle" EXACT [FMA:9564] synonym: "left ventricle proper" EXACT [FMA:9564] xref: FMA:9564 xref: SCTID:278960008 is_a: UBERON:0034698 ! inflow tract of ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0034705 name: developing neuroepithelium def: "An embryonic or larval epithelium that is committed to form part of the nervous system." [AEO:0001008, AEO:JB] synonym: "embryonic neuroepithelium" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "neurepithelium" BROAD [BTO:0000314] synonym: "neuroepithelium" EXACT [AEO:0001008] xref: AEO:0001008 xref: BTO:0000314 xref: EHDAA2_RETIRED:0004654 xref: FMA:64807 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0034706 name: proliferating neuroepithelium def: "An epithelium that is undergoing proliferation to provide large numbers of neuronal cells." [AEO:0001009] xref: AEO:0001009 is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium [Term] id: UBERON:0034707 name: differentiating neuroepithelium def: "A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells." [AEO:0001010] xref: AEO:0001010 is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium [Term] id: UBERON:0034708 name: cerebellum marginal layer synonym: "marginal zone of cerebellum" EXACT [DHBA:12695] synonym: "MZCB" RELATED OMO:0003000 [DHBA:12695] xref: DHBA:12695 xref: EHDAA2:0001152 xref: EMAPA:17789 is_a: UBERON:0034709 ! hindbrain marginal layer relationship: part_of UBERON:0002037 ! cerebellum property_value: development_notes "In the cerebellum, some neuronal precursors enter the marginal zone to form clusters of neurons called nuclei[NBK10047]" xsd:string [Term] id: UBERON:0034709 name: hindbrain marginal layer synonym: "marginal zone of hindbrain" EXACT [DHBA:12694] synonym: "MZH" RELATED OMO:0003000 [DHBA:12694] xref: DHBA:12694 xref: EMAPA:32916 is_a: UBERON:0004062 ! neural tube marginal layer is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034710 name: spinal cord ventricular layer synonym: "spinal cord lateral wall ventricular layer" EXACT [EHDAA2:0001267] xref: EHDAA2:0001267 xref: EMAPA:17585 is_a: UBERON:0004060 ! neural tube ventricular layer relationship: part_of UBERON:0005496 {source="EHDAA2"} ! neural tube lateral wall relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0034711 name: cortical preplate def: "The layer of the developing cerebral cortex that is formed from the first cohort of neurons to migrate out of the cortical ventricular zone; split by the second wave into marginal zone and subplate." [PMID:12626695] xref: EMAPA:35261 is_a: UBERON:0014950 ! layer of developing cerebral cortex [Term] id: UBERON:0034712 name: yellow fibrocartilage def: "Fibrocartilage containing bundles of yellow elastic fibers but with little or no white fibrous tissue." [http://www.ufrgs.br/imunovet/molecular_immunology/muscles.html] xref: SCTID:1456008 is_a: UBERON:0001995 {source="cjm"} ! fibrocartilage [Term] id: UBERON:0034713 name: cranial neuron projection bundle def: "Any of the cranial nerves, or their central nervous system analogs (the optic tract, the epiphyseal tract). These analogs are not true nerves, and are instead evaginated sensory afferents emanating from the brain." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] subset: human_reference_atlas synonym: "cranial nerve fiber bundle" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "cranial nerve fiber tract" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "cranial nerve or tract" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "neuron projection bundle from brain" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034714 name: epiphyseal tract def: "A cranial nerve fiber tract that innervates the parietal eye." [ISBN:0471888893] comment: This should be classified as an evaginated sensory afferents rather than cranial nerves, as they are part of the CNS[ISBN:0471888893] synonym: "epiphyseal nerve" RELATED [ISBN:0471888893] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle [Term] id: UBERON:0034715 name: pineal tract def: "A cranial nerve fiber tract that innervates the pineal body." [ISBN:0471888893] comment: This should be classified as an evaginated sensory afferents rather than cranial nerves, as they are part of the CNS[ISBN:0471888893] synonym: "pineal nerve" RELATED [ISBN:0471888893] xref: FMA:77600 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle [Term] id: UBERON:0034716 name: rostral epiphyseal tract def: "The more rostral of the two branches of the epiphyseal tract." [ISBN:0471888893] synonym: "rostral epiphyseal nerve" RELATED [ISBN:0471888893] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle [Term] id: UBERON:0034717 name: integumental taste bud def: "A taste bud that is located external to the digestive tube, on the head or body, as found in species such as goldfish." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] is_a: UBERON:0001727 ! taste bud relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0034718 name: barbel taste bud def: "A taste bud that is located on a barbel." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] is_a: UBERON:0034717 ! integumental taste bud relationship: part_of UBERON:2000622 ! barbel [Term] id: UBERON:0034719 name: lip taste bud def: "A taste bud that is located on a lip." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001833 ! lip relationship: present_in_taxon NCBITaxon:32443 [Term] id: UBERON:0034720 name: head taste bud def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0034717 ! integumental taste bud relationship: part_of UBERON:0001084 ! skin of head [Term] id: UBERON:0034721 name: pharyngeal taste bud def: "A taste bud that is located in the pharynx." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000355 ! pharyngeal mucosa relationship: present_in_taxon NCBITaxon:7778 [Term] id: UBERON:0034722 name: mouth roof taste bud def: "A taste bud that is located on the roof of the mouth." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud relationship: part_of UBERON:0007375 ! roof of mouth relationship: present_in_taxon NCBITaxon:7778 [Term] id: UBERON:0034723 name: fin taste bud def: "A taste bud that is located on a fin." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud relationship: part_of UBERON:0008897 ! fin relationship: present_in_taxon NCBITaxon:32443 [Term] id: UBERON:0034724 name: esophageal taste bud def: "A taste bud that is located in the esophagus." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001043 ! esophagus relationship: present_in_taxon NCBITaxon:32443 [Term] id: UBERON:0034725 name: pterygopalatine nerve def: "The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube." [Wikipedia:Pharyngeal_nerve] synonym: "ganglionic branch of maxillary nerve to pterygopalatine ganglion" EXACT [FMA:52731] synonym: "pharyngeal nerve" RELATED [Wikipedia:Pharyngeal_nerve] synonym: "pterygopalatine nerve" EXACT [FMA:52731] synonym: "radix sensoria ganglii pterygopalatini" EXACT [FMA:TA] synonym: "sensory root of pterygopalatine ganglion" EXACT [FMA:52731] xref: FMA:52731 xref: SCTID:58267004 xref: Wikipedia:Pharyngeal_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0034726 name: trunk taste bud def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0034717 ! integumental taste bud relationship: part_of UBERON:0001085 ! skin of trunk [Term] id: UBERON:0034727 name: vestibular bulb artery def: "The artery of bulb of vestibule is a branch of the internal pudendal artery." [Wikipedia:Artery_of_bulb_of_vestibule] subset: human_reference_atlas synonym: "arteria bulbi vestibuli" EXACT OMO:0003011 [FMA:TA] synonym: "artery of bulb of vestibule" EXACT [FMA:20900] xref: FMA:20900 xref: SCTID:293541004 xref: Wikipedia:Artery_of_bulb_of_vestibule is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034728 name: autonomic nerve def: "The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa." [Wikipedia:Autonomic_nerve] subset: human_reference_atlas synonym: "nervus visceralis" EXACT [FMA:5866] synonym: "visceral nerve" EXACT [FMA:5866] xref: EMAPA:37957 {source="MA:th"} xref: FMA:5866 xref: MESH:D017776 xref: SCTID:276145003 xref: Wikipedia:Autonomic_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0002410 ! autonomic nervous system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034729 name: sympathetic nerve subset: human_reference_atlas xref: EMAPA:37958 {source="MA:th"} xref: SCTID:181098007 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000013 ! sympathetic nervous system relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034730 name: olfactory tract linking bulb to ipsilateral dorsal telencephalon synonym: "lateral olfactory tract" RELATED [ZFA:0000229] synonym: "tractus olfactorius lateralis" RELATED [ZFA:0000229] xref: TAO:0000229 xref: ZFA:0000229 is_a: UBERON:0002265 ! olfactory tract property_value: external_definition "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain." xsd:string {source="ZFA:0000229"} [Term] id: UBERON:0034734 name: medial olfactory stria def: "The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance." [Wikipedia:Medial_olfactory_stria] synonym: "medial olfactory tract" RELATED [NeuroNames:2278] synonym: "stria olfactoria medialis" EXACT OMO:0003011 [FMA:77627, FMA:TA] synonym: "tractus olfactorius medialis" RELATED OMO:0003011 [NeuroNames:2278] xref: DHBA:12076 xref: DMBA:17779 xref: FMA:77627 xref: HBA:265505518 xref: neuronames:2278 xref: SCTID:369105009 xref: Wikipedia:Medial_olfactory_stria is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis [Term] id: UBERON:0034735 name: oviduct albumen gland def: "A gland in the glandular region of the oviduct that secretes albumen over the ovum. In birds there are two regions of the oviduct, the first secretes a thin chalaziferous albumen layer, the second secretes a thicker albumen layer." [ISBN:978-0226870137] xref: BTO:0000054 is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0000993 ! oviduct [Term] id: UBERON:0034736 name: coracoclavicular ligament def: "Any ligament that connects the coracoid process with the clavicle." [http://orcid.org/0000-0002-6601-2165] synonym: "accessory ligament of acromioclavicular joint" EXACT [FMA:26029] xref: FMA:26029 xref: SCTID:361899005 xref: Wikipedia:Coracoclavicular_ligament is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0003692 {source="FMA"} ! acromioclavicular joint [Term] id: UBERON:0034743 name: inferior longitudinal fasciculus def: "The inferior longitudinal fasciculus connects the temporal lobe and occipital lobe, running along the lateral walls of the inferior and posterior cornua of the lateral ventricle. The existence of this fasciculus independent from the occipitotemporal fasciculus has been questioned for the human being, such that it has been proposed that the term inferior longitudinal fasciculus be replaced by the term 'occipitotemporal projection'." [Wikipedia:Inferior_longitudinal_fasciculus] synonym: "external sagittal stratum" RELATED [NeuroNames:1443] synonym: "fasciculus fronto-occipitalis inferior" RELATED OMO:0003011 [NeuroNames:1443] synonym: "fasciculus longitudinalis inferior" RELATED OMO:0003011 [NeuroNames:1443] synonym: "ilf" RELATED OMO:0003000 [DHBA:10580] xref: DHBA:10580 xref: FMA:77632 xref: HBA:9260 xref: neuronames:1443 xref: NeuroNamesCNID:538 xref: SCTID:369085008 xref: Wikipedia:Inferior_longitudinal_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034745 name: radiation of thalamus synonym: "thalamic radiation" RELATED [FMA:76975] synonym: "thalamus radiation" EXACT [FMA:76975] xref: FMA:76975 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0022259 ! white matter radiation relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus property_value: editor_note "todo - add all" xsd:string [Term] id: UBERON:0034746 name: anterior thalamic radiation synonym: "anterior radiation of thalamus" EXACT [FMA:76976] synonym: "anterior thalamic radiation" EXACT [FMA:76976] synonym: "anterior thalamic radiation" RELATED [NeuroNames:1726] synonym: "anterior thalamic radiations" RELATED [NeuroNames:1726] synonym: "athf" RELATED OMO:0003000 [DHBA:12043] synonym: "radiatio thalami anterior" EXACT [FMA:TA] synonym: "radiationes thalamicae anteriores" RELATED OMO:0003011 [NeuroNames:1726] xref: DHBA:12043 xref: FMA:76976 xref: neuronames:1726 is_a: UBERON:0022260 ! radiation of cerebral hemisphere is_a: UBERON:0034745 ! radiation of thalamus relationship: part_of UBERON:0014526 {source="DHBA"} ! anterior limb of internal capsule [Term] id: UBERON:0034747 name: posterior thalamic radiation synonym: "posterior thalamic radiation" EXACT [FMA:76982] synonym: "posterior thalamic radiation" RELATED [NeuroNames:2083] synonym: "posterior thalamic radiations" RELATED [NeuroNames:2083] synonym: "pthr" RELATED OMO:0003000 [DHBA:12053] synonym: "radiatio posterior thalami" EXACT [FMA:TA] synonym: "radiatio thalamica posterior" EXACT [FMA:TA] synonym: "radiationes thalamicae posteriores" RELATED OMO:0003011 [NeuroNames:2083] xref: DHBA:12053 xref: FMA:76982 xref: neuronames:2083 is_a: UBERON:0022260 ! radiation of cerebral hemisphere is_a: UBERON:0034745 ! radiation of thalamus relationship: part_of UBERON:0034749 ! retrolenticular part of internal capsule [Term] id: UBERON:0034749 name: retrolenticular part of internal capsule synonym: "pars retrolenticularis capsulae internae" RELATED OMO:0003011 [NeuroNames:203] synonym: "pars retrolentiformis" EXACT [FMA:TA] synonym: "pars retrolentiformis (capsulae internae)" RELATED OMO:0003011 [NeuroNames:203] synonym: "postlenticular portion of internal capsule" EXACT [FMA:61957] synonym: "postlenticular portion of internal capsule" RELATED [NeuroNames:203] synonym: "retrolenticular limb" EXACT [FMA:61957] synonym: "retrolenticular part of internal capsule" RELATED [NeuroNames:203] synonym: "retrolenticular part of the internal capsule" RELATED [NeuroNames:203] synonym: "retrolentiform limb" EXACT [FMA:61957] xref: DHBA:12052 xref: FMA:61957 xref: neuronames:203 xref: SCTID:362363008 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014527 {source="DHBA", source="FMA"} ! posterior limb of internal capsule [Term] id: UBERON:0034750 name: visual association cortex def: "Part of cortex considered to function in higher level visual functions." [NLX:143553] synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: NLX:143553 is_a: UBERON:0035015 ! association cortex is_a: UBERON:8440011 ! cortical visual area relationship: part_of UBERON:0000411 ! visual cortex [Term] id: UBERON:0034751 name: primary auditory cortex def: "The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] synonym: "A1C" RELATED OMO:0003000 [DHBA:10236] synonym: "auditory complex area A1" RELATED [NCBIBook:NBK10900] synonym: "auditory core region" RELATED [NeuroNames:1354] synonym: "primary auditory area" RELATED [NeuroNames:1354] synonym: "primary auditory cortex" RELATED [NeuroNames:1354] synonym: "primary auditory cortex (core)" EXACT [DHBA:10236] xref: DHBA:10236 xref: FMA:272953 xref: neuronames:1354 xref: Wikipedia:Primary_auditory_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex [Term] id: UBERON:0034752 name: secondary auditory cortex def: "The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] synonym: "A42" RELATED OMO:0003000 [DHBA:10239] synonym: "belt area of auditory complex" RELATED [NCBIBook:NBK10900] synonym: "belt auditory area" EXACT [FMA:272944] synonym: "peripheral auditory cortex" EXACT [FMA:272944] synonym: "second auditory area" EXACT [NeuroNames:1557] synonym: "second auditory area" RELATED [NeuroNames:1557] synonym: "second auditory cortex" RELATED [NeuroNames:1557] synonym: "secondary auditory cortex (belt, area 42)" EXACT [DHBA:10239] xref: DHBA:10239 xref: FMA:272944 xref: neuronames:1557 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex [Term] id: UBERON:0034753 name: inferior occipitofrontal fasciculus synonym: "fasciculus occipito-frontalis inferior" RELATED OMO:0003011 [NeuroNames:1442] synonym: "fasciculus occipitofrontalis inferior" RELATED OMO:0003011 [NeuroNames:1442] synonym: "inferior fronto-occipital fasciculus" RELATED [NeuroNames:1442] synonym: "inferior occipitofrontal fasciculus" EXACT [DHBA:12070] synonym: "inferior occipitofrontal fasciculus" RELATED [NeuroNames:1442] xref: DHBA:12070 xref: FMA:77633 xref: neuronames:1442 xref: SCTID:369087000 is_a: UBERON:0034754 ! occipitofrontal fasciculus [Term] id: UBERON:0034754 name: occipitofrontal fasciculus def: "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua." [Wikipedia:Occipitofrontal_fasciculus] synonym: "inferior occipitofrontal fasciculus" RELATED [Wikipedia:Occipitofrontal_fasciculus] synonym: "off" RELATED OMO:0003000 [DHBA:10588] xref: DHBA:10588 xref: HBA:9269 xref: Wikipedia:Occipitofrontal_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034762 name: areolar sweat gland def: "Any sweat gland that is part of an areola." [http://orcid.org/0000-0002-6601-2165] synonym: "areolar aprocine sweat gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "sweat gland of areola" EXACT [FMA:62149] xref: FMA:62149 is_a: UBERON:0000382 {source="FMA"} ! apocrine sweat gland relationship: part_of UBERON:0002032 ! areola [Term] id: UBERON:0034763 name: hindbrain commissure def: "Any commissure within the hindbrain." [http://orcid.org/0000-0002-6601-2165, ZFIN:ZDB-PUB-090417-11] xref: TAO:0002199 xref: ZFA:0001692 is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034764 name: remnant of cardiac valve synonym: "vestigial cardiac valve" EXACT [FMA:14153] xref: FMA:14153 is_a: UBERON:0006590 ! remnant of embryonic structure is_a: UBERON:0010313 ! neural crest-derived structure relationship: transformation_of UBERON:0000946 ! cardiac valve [Term] id: UBERON:0034765 name: glabella skin def: "The zone of skin that overlaps with the glabella region." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Glabella] synonym: "glabella" BROAD [] xref: SCTID:244083007 is_a: UBERON:0016475 ! skin of forehead relationship: part_of UBERON:0034766 ! glabella region property_value: taxon_notes "in humans this area is normally hairless" xsd:string [Term] id: UBERON:0034766 name: glabella region def: "A region of the forehead corresponding to the space between the eyebrows and above the nose." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Glabella] synonym: "glabella" NARROW [] xref: Wikipedia:Glabella is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0008200 ! forehead [Term] id: UBERON:0034767 name: buccal vestibule def: "The buccal vestibule is the space external to teeth and gums and internal to lips and cheeks. The proportion of its walls formed by the lips varies according to species depending upon their feeding action. The horse like most herbivores has a relatively small opening. The buccal vestibule opens to the outside rostrally via a U shaped slit the oral fissure. When the mouth is closed the buccal vestibule and the mouth cavity proper connect via spaces between and behind the teeth. These allow free communication between the two sides of the vestibule. Several salivary ducts open into the dorso caudal part of the vestibule: Parotid gland - opens into the cheek on the small parotid papilla, opposite to the caudal part of upper 4 th premolar teeth. Zygomatic gland - the main duct opens in the caudal part of the upper 1 st molar tooth on a small papilla near the vestibular fornix. Submucous glands - minimal in number, confined to the lower lip and adjacent part of the cheek. Secretion occurs through about 10 openings located near the fornix of the vestibule." [MURDOCH:240] xref: FMA:289320 xref: MURDOCH:240 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0034768 name: morphological feature def: "A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0034769 name: lymphomyeloid tissue xref: FMA:79770 xref: NCIT:C41168 is_a: UBERON:0015757 {source="FMA"} ! heterogeneous tissue [Term] id: UBERON:0034770 name: bulbourethral gland epithelium synonym: "epithelium of bulbourethral gland" EXACT [] synonym: "epithelium of bulbourethral gland of male" EXACT [EMAPA:29790] xref: EMAPA:29790 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0016510 ! epithelium of male urethra is_a: UBERON:0034969 ! epithelial layer of duct relationship: part_of UBERON:0002366 ! bulbo-urethral gland [Term] id: UBERON:0034771 name: ventral commissural nucleus of spinal cord def: "The term commissural nucleus of the spinal cord refers to a group of cells in the medial portion of the anterior gray column; it corresponds roughly to lamina VIII." [NeuroNames:1658] synonym: "commissural nucleus of spinal cord" BROAD [FMA:73900] synonym: "commissural nucleus of spinal cord" EXACT [FMA:73900] synonym: "commissural nucleus of spinal cord" RELATED [FMA:73900] synonym: "lamina VIII" RELATED [] xref: FMA:73900 xref: neuronames:1658 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord [Term] id: UBERON:0034772 name: margin of eyelid def: "The confluence of the mucosal surface of the conjunctiva, the edge of the orbicularis, and the cutaneous epithelium." [MGI:anna] synonym: "free margin of eyelid" EXACT [] xref: EMAPA:37905 {source="MA:th"} xref: FMA:59356 xref: SCTID:362527007 is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0034773 name: uncus of parahippocampal gyrus def: "The anterior extremity of the Parahippocampal gyrus is recurved in the form of a hook, the uncus, which is separated from the apex of the temporal lobe by a slight fissure, the incisura temporalis. Although superficially continuous with the hippocampal gyrus, the uncus forms morphologically a part of the rhinencephalon. The term uncus was coined by Felix Vicq dbAzyr (1748b1794)." [Wikipedia:Uncus] subset: human_reference_atlas synonym: "pyriform area (Crosby)" RELATED [NeuroNames:40] synonym: "uncus" RELATED OMO:0003011 [NeuroNames:40] synonym: "uncus hippocampi" EXACT OMO:0003011 [NeuroNames:40] xref: DHBA:12165 xref: FMA:74884 xref: NCIT:C33831 xref: neuronames:40 xref: SCTID:279213004 xref: Wikipedia:Uncus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002973 {source="DHBA"} ! parahippocampal gyrus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034774 name: uncal CA1 synonym: "CA1U" RELATED OMO:0003000 [DHBA:266441267] xref: DHBA:266441267 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034775 name: uncal CA2 synonym: "CA2U" RELATED OMO:0003000 [DHBA:266441311] xref: DHBA:266441311 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034776 name: uncal CA3 synonym: "CA3U" RELATED OMO:0003000 [DHBA:266441355] xref: DHBA:266441355 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034777 name: rostral CA1 synonym: "CA1R" RELATED OMO:0003000 [DHBA:11275] xref: DHBA:11275 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034778 name: rostral CA2 synonym: "CA2R" RELATED OMO:0003000 [DHBA:11285] xref: DHBA:11285 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034779 name: rostral CA3 synonym: "CA3R" RELATED OMO:0003000 [DHBA:11295] xref: DHBA:11295 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034780 name: caudal CA1 synonym: "CA1C" RELATED OMO:0003000 [DHBA:11280] xref: DHBA:11280 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034781 name: caudal CA2 synonym: "CA2C" RELATED OMO:0003000 [DHBA:11290] xref: DHBA:11290 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034782 name: caudal CA3 synonym: "CA3C" RELATED OMO:0003000 [DHBA:11301] xref: DHBA:11301 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034798 name: stratum lacunosum-moleculare of caudal CA1 synonym: "CA1Cslm" RELATED OMO:0003000 [DHBA:11281] xref: DHBA:11281 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034799 name: stratum radiatum of caudal CA1 synonym: "CA1Csr" RELATED OMO:0003000 [DHBA:11282] xref: DHBA:11282 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034800 name: stratum pyramidale of caudal CA1 synonym: "CA1Csp" RELATED OMO:0003000 [DHBA:11283] xref: DHBA:11283 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034801 name: stratum oriens of caudal CA1 synonym: "CA1Cso" RELATED OMO:0003000 [DHBA:11284] xref: DHBA:11284 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034803 name: stratum lacunosum-moleculare of caudal CA2 synonym: "CA2Cslm" RELATED OMO:0003000 [DHBA:11291] xref: DHBA:11291 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034804 name: stratum radiatum of caudal CA2 synonym: "CA2Csr" RELATED OMO:0003000 [DHBA:11292] xref: DHBA:11292 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034805 name: stratum pyramidale of caudal CA2 synonym: "CA2Csp" RELATED OMO:0003000 [DHBA:11293] xref: DHBA:11293 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034806 name: stratum oriens of caudal CA2 synonym: "CA2Cso" RELATED OMO:0003000 [DHBA:11294] xref: DHBA:11294 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034808 name: stratum lacunosum-moleculare of caudal CA3 synonym: "CA3Cslm" RELATED OMO:0003000 [DHBA:11302] xref: DHBA:11302 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034809 name: stratum radiatum of caudal CA3 synonym: "CA3Csr" RELATED OMO:0003000 [DHBA:11303] xref: DHBA:11303 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034810 name: stratum lucidum of caudal CA3 synonym: "CA3Csl" RELATED OMO:0003000 [DHBA:11304] xref: DHBA:11304 is_a: UBERON:0014560 ! CA3 stratum lucidum relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034811 name: stratum pyramidale of caudal CA3 synonym: "CA3Csp" RELATED OMO:0003000 [DHBA:11305] xref: DHBA:11305 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034812 name: stratum oriens of caudal CA3 synonym: "CA3Cso" RELATED OMO:0003000 [DHBA:11306] xref: DHBA:11306 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034828 name: stratum lacunosum-moleculare of rostral CA1 synonym: "CA1Rslm" RELATED OMO:0003000 [DHBA:11276] xref: DHBA:11276 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034829 name: stratum radiatum of rostral CA1 synonym: "CA1Rsr" RELATED OMO:0003000 [DHBA:11277] xref: DHBA:11277 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034830 name: stratum pyramidale of rostral CA1 synonym: "CA1Rsp" RELATED OMO:0003000 [DHBA:11278] xref: DHBA:11278 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034831 name: stratum oriens of rostral CA1 synonym: "CA1Rso" RELATED OMO:0003000 [DHBA:11279] xref: DHBA:11279 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034833 name: stratum lacunosum-moleculare of rostral CA2 synonym: "CA2Rslm" RELATED OMO:0003000 [DHBA:11286] xref: DHBA:11286 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034834 name: stratum radiatum of rostral CA2 synonym: "CA2Rsr" RELATED OMO:0003000 [DHBA:11287] xref: DHBA:11287 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034835 name: stratum pyramidale of rostral CA2 synonym: "CA2Rsp" RELATED OMO:0003000 [DHBA:11288] xref: DHBA:11288 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034836 name: stratum oriens of rostral CA2 synonym: "CA2Rso" RELATED OMO:0003000 [DHBA:11289] xref: DHBA:11289 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034838 name: stratum lacunosum-moleculare of rostral CA3 synonym: "CA3Rslm" RELATED OMO:0003000 [DHBA:11296] xref: DHBA:11296 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034839 name: stratum radiatum of rostral CA3 synonym: "CA3Rsr" RELATED OMO:0003000 [DHBA:11297] xref: DHBA:11297 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034840 name: stratum lucidum of rostral CA3 synonym: "CA3Rsl" RELATED OMO:0003000 [DHBA:11298] xref: DHBA:11298 is_a: UBERON:0014560 ! CA3 stratum lucidum relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034841 name: stratum pyramidale of rostral CA3 synonym: "CA3Rsp" RELATED OMO:0003000 [DHBA:11299] xref: DHBA:11299 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034842 name: stratum oriens of rostral CA3 synonym: "CA3Rso" RELATED OMO:0003000 [DHBA:11300] xref: DHBA:11300 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034858 name: stratum lacunosum-moleculare of uncal CA1 synonym: "CA1Uslm" RELATED OMO:0003000 [DHBA:266441271] xref: DHBA:266441271 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034859 name: stratum radiatum of uncal CA1 synonym: "CA1Usr" RELATED OMO:0003000 [DHBA:266441283] xref: DHBA:266441283 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034860 name: stratum pyramidale of uncal CA1 synonym: "CA1Usp" RELATED OMO:0003000 [DHBA:266441287] xref: DHBA:266441287 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034861 name: stratum oriens of uncal CA1 synonym: "CA1Uso" RELATED OMO:0003000 [DHBA:266441291] xref: DHBA:266441291 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034863 name: stratum lacunosum-moleculare of uncal CA2 synonym: "CA2Uslm" RELATED OMO:0003000 [DHBA:266441315] xref: DHBA:266441315 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034864 name: stratum radiatum of uncal CA2 synonym: "CA2Usr" RELATED OMO:0003000 [DHBA:266441327] xref: DHBA:266441327 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034865 name: stratum pyramidale of uncal CA2 synonym: "CA2Usp" RELATED OMO:0003000 [DHBA:266441331] xref: DHBA:266441331 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034866 name: stratum oriens of uncal CA2 synonym: "CA2Uso" RELATED OMO:0003000 [DHBA:266441335] xref: DHBA:266441335 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034868 name: stratum lacunosum-moleculare of uncal CA3 synonym: "CA3Uslm" RELATED OMO:0003000 [DHBA:266441359] xref: DHBA:266441359 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034869 name: stratum radiatum of uncal CA3 synonym: "CA3Usr" RELATED OMO:0003000 [DHBA:266441371] xref: DHBA:266441371 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034870 name: stratum lucidum of uncal CA3 synonym: "CA3Usl" RELATED OMO:0003000 [DHBA:266441375] xref: DHBA:266441375 is_a: UBERON:0014560 ! CA3 stratum lucidum relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034871 name: stratum pyramidale of uncal CA3 synonym: "CA3Usp" RELATED OMO:0003000 [DHBA:266441379] xref: DHBA:266441379 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034872 name: stratum oriens of uncal CA3 synonym: "CA3Uso" RELATED OMO:0003000 [DHBA:266441383] xref: DHBA:266441383 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034873 name: bodily gas def: "Any substance in the body or expelled from the body that is in a gaseous state." [http://orcid.org/0000-0002-6601-2165] synonym: "gas in anatomical space" EXACT [] synonym: "portion of gas in anatomical space" EXACT [FMA:84580] xref: FMA:84580 is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0034874 name: air in respiratory system def: "Any portion of gas located in a part of the respiratory system that is composed primarily of air." [http://orcid.org/0000-0002-6601-2165] synonym: "respiratory air" EXACT [FMA:84581] synonym: "respiratory system air" EXACT [] xref: FMA:84581 is_a: UBERON:0034947 ! gas in respiratory system [Term] id: UBERON:0034875 name: future pituitary gland synonym: "pituitary primordium" EXACT [EHDAA2:0001472] xref: EHDAA2:0001472 xref: EMAPA:32796 is_a: UBERON:0006598 ! presumptive structure relationship: develops_from UBERON:0000924 {source="Wikipedia"} ! ectoderm relationship: part_of UBERON:0000033 {source="EMAPA"} ! head [Term] id: UBERON:0034876 name: future neurohypophysis def: "The outgrowth of neuroectoderm located on the floor of the embryonic hypothalamus that gives rise to the neurohypophysis (posterior lobe) of the pituitary gland." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1930/, MP:0013339] synonym: "neurohypohysial region" RELATED [EHDAA2:0004434] synonym: "neurohypophyseal bud" RELATED [MP:0013339] xref: EHDAA2:0004434 xref: EMAPA:16647 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0001894 {source="EMAPA"} ! diencephalon relationship: part_of UBERON:0034875 {source="EMAPA"} ! future pituitary gland [Term] id: UBERON:0034877 name: angioblastic cord def: "The cordlike masses of splanchnic mesenchymal cells ventral to the primordial pericardial coelom that arrange themselves side by side to form the primordia of the endocardial heart tubes." [MP:0012500] synonym: "angiogenic cell cluster" EXACT [] xref: NCIT:C34106 xref: UMLS:C1515990 is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0004139 ! cardiogenic plate property_value: editor_note "resolve placement within heart development hierarchy; potentially merge with existing classes" xsd:string property_value: taxon_notes "day 18 [CS08] in human[https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Primordial_Heart_Tube]" xsd:string [Term] id: UBERON:0034878 name: prechordal mesoderm def: "The area of axial mesoderm that develops into the prechordal plate." [MGI:anna] synonym: "prechordal mesenchyme" EXACT [] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003068 ! axial mesoderm [Term] id: UBERON:0034884 name: juxtaglomerular arteriole subset: human_reference_atlas xref: EMAPA:27991 is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! kidney arterial blood vessel relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "compare with afferent arteriole" xsd:string [Term] id: UBERON:0034885 name: viscerocranial mucosa def: "Nonparenchymatous organ which consists of mucosae of the nose, mouth, pharyngotympanic tube, pharynx and larynx. Examples: There is only one viscerocranial mucosa." [FMA:59658] xref: FMA:59658 is_a: UBERON:0000344 ! mucosa relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0034888 name: primary motor cortex layer 1 synonym: "primary motor cortex lamina 1" RELATED [NLX:152661] synonym: "primary motor cortex lamina I" RELATED [NLX:152661] xref: NLX:152661 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0001384 {source="NIFSTD"} ! primary motor cortex relationship: part_of UBERON:0005390 {source="NIFSTD"} ! cortical layer I [Term] id: UBERON:0034889 name: posterior parietal cortex def: "The posterior parietal cortex is a portion of the parietal lobe which manipulates mental images, and integrates sensory and motor portions of the brain. Some sources say that it consists of Brodmann area 5 and Brodmann area 7. Other sources say it is only area 7." [Wikipedia:Posterior_parietal_cortex] synonym: "PoPC" RELATED OMO:0003000 [DHBA:10214] xref: DHBA:10214 xref: Wikipedia:Posterior_parietal_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016530 {source="DHBA"} ! parietal cortex [Term] id: UBERON:0034891 name: insular cortex def: "The insular cortex (also insula and insular lobe) is a portion of the cerebral cortex folded deep within the lateral sulcus (the fissure separating the temporal lobe from the parietal and frontal lobes) within each hemisphere of the mammalian brain. It is the primary gustatory cortex and is involved in sensorimotor and somatosensory as well as socioemotional functions." [https://orcid.org/0000-0002-4964-5083, MESH:D007419, Wikipedia:INSULA] subset: human_reference_atlas synonym: "cortex of insula" EXACT [FMA:242223] synonym: "gray matter of insula" RELATED [FMA:242223] synonym: "ICx" RELATED OMO:0003000 [DHBA:10288] synonym: "iNS" BROAD OMO:0003000 [FMA:242223, FMA:CMA] synonym: "insular neocortex" EXACT [DHBA:10288] xref: BM:Tel-Cx-Ins xref: DHBA:10288 xref: DMBA:16058 xref: EMAPA:35432 xref: FMA:242223 xref: MA:0000909 xref: SCTID:369221008 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0002022 ! insula relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034892 name: granular insular cortex def: "Granular region of the insular cortex." [http://orcid.org/0000-0002-6601-2165] synonym: "area Ig of Mesulam" RELATED [NeuroNames:1192] synonym: "cortex insularis granularis" RELATED OMO:0003011 [NeuroNames:1192] synonym: "granular domain" RELATED [NeuroNames:1192] synonym: "granular insula" EXACT [NeuroNames:1192] synonym: "granular insula" RELATED [NeuroNames:1192] synonym: "granular insular area" RELATED [NeuroNames:1192] synonym: "granular insular cortex" RELATED [NeuroNames:1192] synonym: "granular-isocortical insula" RELATED [NeuroNames:1192] synonym: "insular isocortical belt" RELATED [NeuroNames:1192] synonym: "visceral area" RELATED [NeuroNames:1192] xref: BTO:0004341 xref: DHBA:10290 xref: neuronames:1192 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034891 ! insular cortex [Term] id: UBERON:0034893 name: agranular insular cortex def: "Agranular region of the insular cortex." [http://orcid.org/0000-0002-6601-2165] synonym: "cortex insularis dysgranularis" RELATED OMO:0003011 [NeuroNames:1780] synonym: "dysgranular insula" RELATED [NeuroNames:1780] synonym: "dysgranular insular area" RELATED [NeuroNames:1780] synonym: "dysgranular insular cortex" EXACT [DHBA:10289] synonym: "dysgranular insular cortex" RELATED [NeuroNames:1780] synonym: "gustatory area" RELATED [NeuroNames:1780] synonym: "gustatory cortex" RELATED [NeuroNames:1780] xref: BTO:0004342 xref: DHBA:10289 xref: DHBA:10328 xref: neuronames:1780 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034891 ! insular cortex [Term] id: UBERON:0034894 name: lateral nucleus of stria terminalis synonym: "BSTL" RELATED OMO:0003000 [NLX:54921] synonym: "lateral bed nucleus of stria terminalis" RELATED [NLX:54921] synonym: "lateral bed nucleus of the stria terminalis" RELATED [NLX:54921] synonym: "lateral subdivision of BNST" EXACT [DHBA:10386] xref: DHBA:10386 xref: NLX:54921 xref: NLX:60319 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] id: UBERON:0034895 name: medial nucleus of stria terminalis synonym: "BSTM" RELATED OMO:0003000 [NLX:80623] synonym: "medial bed nucleus of stria terminalis" RELATED [NLX:80623] synonym: "medial bed nucleus of the stria terminalis" RELATED [NLX:80623] synonym: "medial subdivision of BNST" EXACT [DHBA:10385] xref: DHBA:10385 xref: NLX:80623 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] id: UBERON:0034896 name: ansa peduncularis synonym: "ansa peduncularis in thalamo" EXACT [FMA:TA] synonym: "ansa peduncularis in thalamus" EXACT [FMA:62071] synonym: "AP" RELATED OMO:0003000 [DHBA:266441591] synonym: "peduncular loop" EXACT [FMA:62071] xref: DHBA:266441591 xref: FMA:62071 xref: MBA:892 xref: neuronames:445 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001900 {source="FMA"} ! ventral thalamus relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034898 name: alveolar ridge of premaxilla def: "The thickened ridge of bone that contains the tooth sockets on the premaxilla." [http://orcid.org/0000-0002-6601-2165] synonym: "pars dentalis of premaxilla" EXACT [AAO:0000397] xref: AAO:0000397 is_a: UBERON:0004103 ! alveolar ridge relationship: part_of UBERON:0002244 {source="AAO"} ! premaxilla [Term] id: UBERON:0034900 name: palatine process of premaxilla def: "Lingual ledge on the inner surface of the premaxilla." [AAO:0000414, AAO:LAP] synonym: "pars palatina of premaxilla" EXACT [AAO:0000414] xref: AAO:0000414 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla property_value: taxon_notes "A posterior extension of the premaxilla that lies along the palatine and fuses to some extent with it. In the Passeres it may be fused, unfused, free or a lateral flange. Evolved multiple times in Passerines [http://www.biodiversitylibrary.org/part/29066]" xsd:string [Term] id: UBERON:0034901 name: cervical sympathetic nerve trunk def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. These emerging postganglionic nerves synapse with preganglionic nerves from the thoracic spinal cord. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things." [Wikipedia:Cervical_ganglia] synonym: "cervical part of sympathetic trunk" EXACT [FMA:6261] synonym: "cervical sympathetic chain" EXACT [FMA:6261] synonym: "cervical sympathetic trunk" EXACT [FMA:6261] xref: FMA:6261 xref: SCTID:280533000 xref: Wikipedia:Cervical_ganglia is_a: UBERON:0004295 ! sympathetic nerve trunk relationship: part_of UBERON:0005434 ! cervical region [Term] id: UBERON:0034902 name: sacral sympathetic nerve trunk synonym: "pelvic sympathetic nerve trunk" RELATED [MA:0001164] synonym: "pelvic sympathetic trunk" RELATED [] synonym: "sacral part of sympathetic trunk" EXACT [FMA:6264] synonym: "sacral sympathetic chain" EXACT [FMA:6264] synonym: "sacral sympathetic trunk" EXACT [FMA:6264] xref: EMAPA:37656 {source="MA:th"} xref: FMA:6264 xref: MA:0001164 is_a: UBERON:0004295 ! sympathetic nerve trunk relationship: part_of UBERON:0005473 ! sacral region [Term] id: UBERON:0034903 name: left atrium endocardium def: "Endocardium that is part of the left atrium." [http://orcid.org/0000-0002-6601-2165] synonym: "endocardium of left atrium" EXACT [FMA:7286] synonym: "left atrial endocardium" EXACT [] synonym: "left atrium endocardial tissue" RELATED [VHOG:0001226] xref: FMA:7286 xref: SCTID:190064008 xref: VHOG:0001226 is_a: UBERON:0002166 ! endocardium of atrium relationship: part_of UBERON:0002079 ! left cardiac atrium property_value: external_definition "Endocardium of atrium which is continuous with the tunica intima of the trunk of pulmonary vein." xsd:string {source="FMA:7286"} [Term] id: UBERON:0034905 name: gland lumen synonym: "lumen of gland" EXACT [] is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0034907 name: pineal parenchyma def: "Parenchymal tissue that forms the pineal gland." [http://orcid.org/0000-0002-6601-2165] xref: NCIT:C41834 xref: UMLS:C1519088 is_a: UBERON:0005158 ! parenchyma of central nervous system relationship: part_of UBERON:0001905 ! pineal body [Term] id: UBERON:0034908 name: scapular muscle def: "Any of the muscles that are responsible for moving the scapula. In humans these are the levator scapulae, the infraspinatus muscle, the teres major, the teres minor, and the supraspinatus muscle." [HPO:curators] is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate [Term] id: UBERON:0034909 name: intermaxillary suture def: "A cranial suture in the midline of the skull that connects the left and right maxilla bones." [http://www.researchgate.net/publication/255909975_Relationship_between_intermaxillary_suture_and_midline_diastema, https://orcid.org/0000-0001-5889-4463] comment: in humans, the upper maxillae (the upper jaw) is composed of the right and left maxilla bones, which are fused in the midline at the intermaxillary suture to form the upper jaw.[https://orcid.org/0000-0001-5889-4463] synonym: "intermaxillary suture of skull" EXACT [FMA:52963] xref: FMA:52963 is_a: UBERON:0003685 ! cranial suture is_a: UBERON:0009199 ! facial suture relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0034910 name: medial pretectal nucleus synonym: "medial pretectal area" RELATED [NeuroNames:1176] synonym: "medial pretectal nucleus" RELATED [NeuroNames:1176] synonym: "MPT" RELATED OMO:0003000 [DHBA:12184, DMBA:16585] xref: DHBA:12184 xref: DMBA:16585 xref: neuronames:1176 is_a: UBERON:0011214 ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0034918 name: anterior pretectal nucleus synonym: "anterior (ventral /principal) pretectal nucleus" EXACT [DHBA:12187] synonym: "anterior pretectal nucleus" RELATED [NeuroNames:1116] xref: DHBA:12187 xref: EMAPA:37920 {source="MA:th"} xref: neuronames:1116 xref: NLX:144456 is_a: UBERON:0011214 ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus property_value: editor_note "consider merging with olivary; however, Butler and Hodos treat as distinct within Eutherians" xsd:string [Term] id: UBERON:0034919 name: juvenile stage def: "The stage of being no more dependent of the nest and/or from caregivers for subsistence while having not reach sexual maturity." [Bgee:AN, https://github.com/obophenotype/uberon/issues/645] xref: ChirDv:0000034 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgalDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: GgorDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000271 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000014 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000178 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: OariDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PpanDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: PtroDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000058 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000112 ! sexually immature stage [Term] id: UBERON:0034920 name: infant stage def: "Nursing stage that follows the neonate stage in mammals and ends at weaning." [Bgee:AN, https://github.com/obophenotype/uberon/issues/644] xref: ChirDv:0000022 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: HsapDv:0000261 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MdomDv:0000033 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmulDv:0000053 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: MmusDv:0000177 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: RnorDv:0000057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} xref: SscrDv:0000085 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0018685 ! nursing stage [Term] id: UBERON:0034921 name: multi organ part structure def: "An multicellular anatomical structure that has subparts of multiple organs as a part." [CARO:0020001] subset: common_anatomy synonym: "anatomical cluster" RELATED [CARO:0020001] xref: CARO:0020001 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0034922 name: cell cluster def: "A cluster of cells, largely surrounded by a morphological boundary." [CARO:0020002] subset: common_anatomy xref: CARO:0020002 xref: FMA:62807 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0034923 name: disconnected anatomical group def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [CARO:0020000] subset: common_anatomy xref: CARO:0020000 xref: FBbt:00007276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 {source="CARO"} ! material anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0034924 name: aligned anatomical group def: "An anatomical group whose members are arranged in a line." [CARO:0002002] comment: Examples include the rows of sense organs commonly found in the cuticles of insects. subset: common_anatomy xref: CARO:0002002 is_a: UBERON:0034923 {source="CARO"} ! disconnected anatomical group relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0034925 name: anatomical collection def: "A collection of anatomical structures that are alike in terms of their morphology or developmental origin." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy is_a: UBERON:0000465 ! material anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: editor_note "resolve if this should be a subclass of disconnected anatomical group. Some collections (e.g. the skeleton or skull) are arguably connected" xsd:string [Term] id: UBERON:0034926 name: anatomical row def: "An anatomical collection that is arranged in a line." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy xref: FBbt:00100152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034925 ! anatomical collection relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 property_value: editor_note "resolve if this should be a subclass of or merged with aligned anatomical group." xsd:string [Term] id: UBERON:0034927 name: arcuate artery of foot def: "The arcuate artery of the foot (metatarsal artery) arises a little anterior to the lateral tarsal artery; it passes lateralward, over the bases of the metatarsal bones, beneath the tendons of the Extensor digitorum brevis, its direction being influenced by its point of origin; and its anastomoses with the lateral tarsal and lateral plantar arteries. This vessel gives off the second, third, and fourth dorsal metatarsal arteries. It is not present in all individuals." [Wikipedia:Arcuate_artery_of_the_foot] subset: human_reference_atlas xref: FMA:44594 xref: SCTID:244331005 xref: Wikipedia:Arcuate_artery_of_the_foot is_a: UBERON:0001637 ! artery is_a: UBERON:0003521 ! pes blood vessel relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034928 name: dorsal surface of penis synonym: "dorsum of penis" EXACT [FMA:19623] synonym: "dorsum penis" EXACT [FMA:TA] xref: FMA:19623 is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0034929 name: external soft tissue zone def: "A region or zone on the surface of an organism that encompasses skin and any adnexa, down through muscles and bounded by underlying skeletal support structures." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0010000 ! multicellular anatomical structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0034930 name: auricular feather is_a: UBERON:0000022 ! feather property_value: function_notes "the auricular feathers play a role in hearing by reflecting and funneling sound into the external acoustic meatus" xsd:string [Term] id: UBERON:0034931 name: perforant path def: "A pathway of fibers originating in the lateral part of the entorhinal area, perforating the subiculum of the hippocampus, and running into the stratum moleculare of the hippocampus, where these fibers synapse with others that go to the dentate gyrus. (Dorland, 28th ed)." [MESH:A08.612.600] synonym: "perf" RELATED OMO:0003000 [DHBA:12080] synonym: "perforant path" RELATED [MESH:A08.612.600] synonym: "perforant pathway" RELATED [MESH:A08.612.600] synonym: "perforating fasciculus" RELATED [MESH:A08.612.600] synonym: "tractus perforans" RELATED OMO:0003011 [Wikipedia:Perforant_path] xref: DHBA:12080 xref: HBA:265505250 xref: MBA:713 xref: MESH:D019580 xref: NCIT:C13084 xref: neuronames:2686 xref: UMLS:C0524810 xref: Wikipedia:Perforant_path is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034932 name: epithelium of biliary system def: "The epithelial layer covering the biliary system. This includes the epithelium of the gallbladder (when present) as well as the intrahepatic and extrahepatic bile ducts." [BTO:0001513, http://orcid.org/0000-0002-6601-2165, MGI:cs] synonym: "biliary epithelium" RELATED [BTO:0001513] synonym: "biliary system epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "biliary tract epithelium" RELATED [http://orcid.org/0000-0002-6601-2165] xref: BTO:0001513 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0002294 ! biliary system [Term] id: UBERON:0034933 name: layer of smooth muscle tissue def: "Any organ component layer that consists of smooth muscle tissue." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0018260 ! layer of muscle tissue [Term] id: UBERON:0034934 name: Weber's gland def: "One of the lingual glands located on the lateral margins of the tongue, at the level of the foliate papillae and in the root of the tongue behind the circumvallate papillae." [MGI:anna, PMCID:PMC2667924] subset: human_reference_atlas synonym: "gland of Weber" EXACT [] synonym: "posterior superficial lingual gland" EXACT [MGI:anna] is_a: UBERON:0001830 ! minor salivary gland is_a: UBERON:0003409 ! gland of tongue relationship: present_in_taxon NCBITaxon:9606 property_value: taxon_notes "in humans, the ducts of posterior superficial lingual glands open into the crypts of lingual tonsils; mucous supplied by these glands may help to cleanse the crypts and aid in deglutition" xsd:string [Term] id: UBERON:0034935 name: pars plicata of ciliary body def: "Corrugated anterior region of ciliary body where ciliary processes arise." [http://orcid.org/0000-0002-6601-2165] synonym: "ciliary crown" EXACT [FMA:58431] synonym: "corona ciliaris" EXACT [FMA:58431] xref: FMA:58431 xref: SCTID:280859006 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] id: UBERON:0034936 name: pars plana of ciliary body def: "Flattened posterior region of ciliary body." [http://orcid.org/0000-0002-6601-2165] synonym: "ciliary ring" EXACT [FMA:58480] synonym: "orbiculus ciliaris" EXACT [FMA:58480] xref: FMA:58480 xref: NCIT:C33219 xref: SCTID:368830002 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] id: UBERON:0034937 name: pharyngeal bar synonym: "branchial bar" RELATED [] synonym: "gill bar" RELATED [] is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0013765 ! digestive system element relationship: never_in_taxon NCBITaxon:7776 relationship: part_of UBERON:0001042 ! chordate pharynx relationship: present_in_taxon NCBITaxon:117569 relationship: present_in_taxon NCBITaxon:7737 property_value: taxon_notes "Haikouella possessed a small number of pharyngeal bars that may have been composed of mucocartilage, as in modern lampreys (Holland and Chen, 2001). the pharyngeal bars of Haikouella were probably derived from neural crest, as were the sensory components of the cranial nerves that innervated its pharyngeal muscles[http://icb.oxfordjournals.org/content/42/4/743.full]" xsd:string [Term] id: UBERON:0034938 name: mucocartilage tissue def: "A temporary avascular cartilage found in the heads of ammocoete larvae and surrounded by perichondrium. Contains a few fibroblasts scattered throughout ECM containing elastic-like microfibrils." [ISBN:0124166857] synonym: "mucocartilage" EXACT [] synonym: "mucocartilaginous tissue" EXACT [] is_a: UBERON:0002418 {notes="may not be considered true cartilage as it contains lamprins rather than collagen"} ! cartilage tissue relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0034939 name: future piston subset: cyclostome_subset synonym: "future lamprey tongue" RELATED [UBERON:0010896] synonym: "future lingual cartilage" EXACT [UBERON:0010896] synonym: "future piston" RELATED [UBERON:0010896] synonym: "piston mucocartilage" RELATED [] is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0000033 ! head property_value: development_notes "the mucocartilage dedifferentiaes to mesenchyme creating a blastema which differentiates to chondroblasts secreting proteoglycans resulting in the piston cartilage" xsd:string [Term] id: UBERON:0034940 name: venous sinus cavity def: "An enlarged chamber in the blood sinus capable of accumulating a large volume of blood." [GOC:YMB, ZFA:0007073] synonym: "blood sinus cavity" EXACT [ZFA:0007073] synonym: "blood sinus lumen" EXACT [ZFA:0007073] xref: ZFA:0007073 is_a: UBERON:0010161 ! lumen of blood vessel [Term] id: UBERON:0034941 name: blood sinus of vibrissa def: "The sinuses of Vibrissae are the walls of blood spaces surrounding the roots of vibrissae." [MURDOCH:1838] synonym: "blood sinus" BROAD [] synonym: "lower cavernous sinus" NARROW SENSU [] synonym: "ring sinus" NARROW [] synonym: "sinus of vibrissa" EXACT [] synonym: "sinuses of vibrissae" RELATED OMO:0003004 [] synonym: "upper cavernous sinus" NARROW SENSU [] synonym: "vibrissa sinus" EXACT [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011933 ! vibrissa unit [Term] id: UBERON:0034942 name: vibrissal follicle-sinus complex def: "A sensory receptor of the mammalian integument system that consist of a blood sinus plus follicle, and sometimes concentric rings of epidermal tissue." [PMID:16342212] synonym: "F-SC" RELATED OMO:0003000 [] is_a: UBERON:0012451 ! sensory receptor relationship: part_of UBERON:0011933 ! vibrissa unit [Term] id: UBERON:0034943 name: saccus vasculosus def: "A circumventricular organ of the hypothalamus of many jawed fishes, protruding from the caudal infundibular wall. It is a vascularized neuroepithelium that consists of coronet cells, cerebrospinal fluid-contacting neurons and supporting cells." [GOC:mr, https://github.com/obophenotype/uberon/issues/662, PMID:23820554, PMID:4115676] is_a: UBERON:0005408 {source="GOC:mr"} ! circumventricular organ relationship: never_in_taxon NCBITaxon:32523 relationship: part_of UBERON:0001898 ! hypothalamus relationship: present_in_taxon NCBITaxon:8022 {source="PMID:4115676"} property_value: function_notes "Although its function remains hypothetical, it may contain sensory receptors for depth chemical detection. Other probable functions are osmoregulation ionic transport skeletal growth and tooth regeneration, although other homeostatic functions are not excluded" xsd:string property_value: function_notes "response to photoperiodic signals[PMID:23820554]" xsd:string property_value: function_notes "seasonal receptor[PMID:23820554]" xsd:string [Term] id: UBERON:0034944 name: zone of organ synonym: "organ region with floating fiat boundary" RELATED [FMA:55268] synonym: "organ sector" EXACT [FMA:55268] synonym: "organ zonal region" EXACT [] synonym: "organ zone" EXACT [FMA:55268] xref: FMA:55268 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0034945 name: excreted gas def: "Any gaseous product of an excretory process." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000174 ! excreta is_a: UBERON:0034873 ! bodily gas [Term] id: UBERON:0034946 name: gas excreted from digestive tract def: "Any excreted gas that is produced by the digestive tract." [http://orcid.org/0000-0002-6601-2165] comment: In mammals, mostly produced as a byproduct of bacterial fermentation in the gastrointestinal (GI) tract, especially the colon, and excreted through the rectum synonym: "flatulence" NARROW [FMA:78440] synonym: "flatus" NARROW OMO:0003011 [Wikipedia:Flatulence] synonym: "intestinal gas" NARROW [] xref: FMA:78440 is_a: UBERON:0034945 ! excreted gas [Term] id: UBERON:0034947 name: gas in respiratory system def: "Any portion of gas located in a part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] synonym: "respiratory gas" EXACT [] synonym: "respiratory system gas" EXACT [] is_a: UBERON:0034873 ! bodily gas [Term] id: UBERON:0034948 name: carbon dioxide in respiratory system def: "Any portion of gas located in a part of the respiratory system that is composed primarily of carbon dioxide." [http://orcid.org/0000-0002-6601-2165] synonym: "respiratory CO2" EXACT [] synonym: "respiratory system CO2" EXACT [] is_a: UBERON:0034947 ! gas in respiratory system [Term] id: UBERON:0034949 name: lymphatic valve synonym: "lymphatic vessel valve" EXACT [FMA:68454] xref: FMA:68454 is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0034950 name: lymph sac of lymph heart def: "An extensive dorsal subcutaneous sac that opens into a lymph heart." [https://github.com/obophenotype/uberon/issues/1383, https://www.merriam-webster.com/dictionary/lymph%20sac] is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0015202 ! lymph heart property_value: taxon_notes "The anuran lymphatic system consists of extensive subcutaneous and intrapleuroperitoneal sacs separated by connective tissue walls and interconnected by one-way valves [DOI:10.1152/japplphysiol.00201.2013]" xsd:string [Term] id: UBERON:0034951 name: subcutaneous lymph sac xref: SCTID:330419002 is_a: UBERON:0034950 ! lymph sac of lymph heart relationship: present_in_taxon NCBITaxon:8342 [Term] id: UBERON:0034952 name: intrapleuroperitoneal lymph sac is_a: UBERON:0034950 ! lymph sac of lymph heart [Term] id: UBERON:0034953 name: embryonic lymph sac def: "A population of lymphatic endothelial cell precursors that will form the lymph vessels." [DOI:10.1152/japplphysiol.00201.2013, https://github.com/obophenotype/uberon/issues/1383] synonym: "primary lymph sac" RELATED [] xref: NCIT:C34262 xref: UMLS:C1514424 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 ! epithelial sac relationship: part_of UBERON:0006558 {source="VHOG"} ! lymphatic part of lymphoid system [Term] id: UBERON:0034958 name: retroperitoneal embryonic lymph sac def: "An embryonic lymph sac that forms in the root of the mesentery on the posterior abdominal wall." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] xref: NCIT:C34285 xref: UMLS:C1514922 is_a: UBERON:0034953 ! embryonic lymph sac [Term] id: UBERON:0034959 name: right lymph heart xref: XAO:0000371 is_a: UBERON:0015202 ! lymph heart is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0034960 name: left lymph heart xref: XAO:0000372 is_a: UBERON:0015202 ! lymph heart is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0034961 name: embryonic lymph heart def: "A lymph heart that is part of an embryo." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0015202 ! lymph heart relationship: part_of UBERON:0000922 ! embryo property_value: taxon_notes "Avian embryos have a pair of lymph hearts that return lymph in ovo from the extraembryonic membranes (120). These hearts partially degenerate after hatching (9)[DOI:10.1152/japplphysiol.00201.2013]" xsd:string [Term] id: UBERON:0034962 name: copulatory lymph heart def: "A lymph heart that assists in the return of lymph from the penis to the venous system." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0015202 ! lymph heart property_value: taxon_notes "Flightless ratite birds apparently use a lymphatic pressure mechanism, rather than a blood vascular mechanism, for penile erection[DOI:10.1152/japplphysiol.00201.2013]" xsd:string [Term] id: UBERON:0034963 name: lateral fornix of vagina def: "The vaginal fornix that is to the side of the cervix." [Wikipedia:Vaginal_fornix] synonym: "lateral part of fornix of vagina" EXACT [FMA:19988] synonym: "pars lateralis fornicis vaginae" EXACT OMO:0003011 [FMA:TA] xref: FMA:19988 is_a: UBERON:0000051 {source="FMA"} ! fornix of vagina [Term] id: UBERON:0034964 name: superficial epigastric artery def: "An artery that arises from the femoral artery and supplies the abdominal wall. It distributes branches to the superficial subinguinal lymph glands, the superficial fascia, and the integument; it anastomoses with branches of the inferior epigastric, and with its fellow of the opposite side." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Superficial_epigastric_artery] subset: human_reference_atlas xref: FMA:20734 xref: SCTID:368079006 xref: Wikipedia:Superficial_epigastric_artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0006349 ! epigastric artery relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034965 name: middle thyroid vein def: "The middle thyroid vein collects the blood from the lower part of the thyroid gland, and after being joined by some veins from the larynx and trachea, ends in the lower part of the internal jugular vein." [Wikipedia:Middle_thyroid_vein] subset: human_reference_atlas xref: FMA:50823 xref: SCTID:303422002 xref: Wikipedia:Middle_thyroid_vein is_a: UBERON:0018246 ! thyroid vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034968 name: sagittal sulcus def: "A sulcus that lies within the longitudinal fissure." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Sagittal_sulcus] xref: Wikipedia:Sagittal_sulcus is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0034969 name: epithelial layer of duct synonym: "duct epithelium" RELATED [] synonym: "ductal epithelium" RELATED [] xref: NCIT:C25787 xref: UMLS:C1512086 is_a: UBERON:0003914 ! epithelial tube relationship: part_of UBERON:0000058 ! duct [Term] id: UBERON:0034971 name: aortic body def: "One of several small clusters of chemoreceptors, baroreceptors, and supporting cells located along the aortic arch." [Wikipedia:Aortic_body] synonym: "aortic bodies" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "aortic glands" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "Zuckerkandl's body" RELATED [Wikipedia:Aortic_body] xref: BTO:0006193 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MESH:D001016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C97112 xref: SCTID:75061007 xref: Wikipedia:Aortic_body is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: part_of UBERON:0001508 ! arch of aorta [Term] id: UBERON:0034972 name: jugular body def: "A nonchromaffin paraganglion located in the wall of the jugular bulb." [MESH:A08.800.550.700.120.600.350] synonym: "glomus jugulare" EXACT [] synonym: "glomus tympanicum" EXACT [] synonym: "jugulotympanic body" EXACT [FMA:50848] synonym: "tympanic body" EXACT [FMA:50848] xref: FMA:50848 xref: MESH:D005924 xref: SCTID:181381004 xref: SCTID:80595007 is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: part_of UBERON:0034980 {source="cjm"} ! jugular bulb [Term] id: UBERON:0034978 name: paraganglion (generic) def: "A cluster of neuroendocrine cells derived from neural crest. Paraganglia may be chromaffin or nonchromaffin." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Paraganglion] synonym: "paraganglia" RELATED OMO:0003004 [] xref: FMA:15648 xref: SCTID:281695005 xref: Wikipedia:Paraganglion is_a: UBERON:0010001 {source="cjm"} ! cell cluster organ is_a: UBERON:0010313 ! neural crest-derived structure property_value: editor_note "corresponding portion of CL needs fixed" xsd:string [Term] id: UBERON:0034979 name: nonchromaffin paraganglion def: "A cluster of chemoreceptive and support cells associated with blood vessels and nerves." [MESH:A08.800.550.700.120.600, Wikipedia:Paraganglion] xref: MESH:D010234 is_a: UBERON:0034978 ! paraganglion (generic) [Term] id: UBERON:0034980 name: jugular bulb synonym: "bulb of jugular vein" EXACT [] is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001586 {source="FMA"} ! internal jugular vein [Term] id: UBERON:0034981 name: superior bulb of internal jugular vein subset: human_reference_atlas synonym: "bulbus superior venae jugularis" EXACT [FMA:TA] synonym: "superior bulb of jugular vein" EXACT [FMA:50805] xref: FMA:50805 xref: SCTID:158945007 is_a: UBERON:0034980 {source="FMA"} ! jugular bulb relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034982 name: inferior bulb of internal jugular vein subset: human_reference_atlas synonym: "bulbus inferior venae jugularis" EXACT [FMA:TA] synonym: "inferior bulb of jugular vein" EXACT [FMA:50807] xref: FMA:50807 xref: SCTID:159029003 is_a: UBERON:0034980 {source="FMA"} ! jugular bulb relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034983 name: ischial tuberosity def: "A horizontal thickening onto which the muscles of the femur, such as the quadriceps and hamstring, attach." [MURDOCH:1034] synonym: "ischial tuberosities" RELATED [Wikipedia:Tuberosity_of_the_ischium] synonym: "ischial tuberosity" RELATED [Wikipedia:Tuberosity_of_the_ischium] synonym: "tuber ischiadicum" RELATED [Wikipedia:Tuberosity_of_the_ischium] synonym: "tuber ischiale" EXACT [FMA:17010] xref: FMA:17010 xref: NCIT:C105446 xref: SCTID:182041003 xref: Wikipedia:Tuberosity_of_the_ischium is_a: UBERON:0005813 {source="FMA"} ! tubercle [Term] id: UBERON:0034984 name: nerve to quadratus femoris def: "The nerve to quadratus femoris is a nerve that provides innervation to the quadratus femoris and gemellus inferior muscles." [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to quadratus femoris" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris and gemellus inferior" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris muscle" RELATED [Wikipedia:Nerve_to_quadratus_femoris] xref: FMA:78705 xref: SCTID:280351000 xref: Wikipedia:Nerve_to_quadratus_femoris is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0034986 name: sacral nerve plexus def: "A nerve plexus which provides motor and sensory nerves for the posterior thigh, most of the lower leg, the entire foot, and part of the pelvis." [Wikipedia:Sacral_plexus] subset: human_reference_atlas synonym: "plexus sacralis" EXACT [FMA:TA] synonym: "plexus sacralis" RELATED [Wikipedia:Sacral_plexus] synonym: "sacral plexus" EXACT [FMA:5909] xref: FMA:5909 xref: NCIT:C12846 xref: SCTID:181056009 xref: Wikipedia:Sacral_plexus is_a: UBERON:0001815 ! lumbosacral nerve plexus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034987 name: lumbar nerve plexus def: "A nervous plexus in the lumbar region of the body which forms part of the lumbosacral plexus." [Wikipedia:Lumbar_plexus] subset: human_reference_atlas synonym: "femoral plexus" RELATED [Wikipedia:Lumbar_plexus] synonym: "lumbar plexus" EXACT [FMA:5908] synonym: "plexus lumbalis" EXACT [FMA:TA] synonym: "plexus lumbalis" RELATED [Wikipedia:Lumbar_plexus] xref: FMA:5908 xref: NCIT:C12845 xref: SCTID:302506006 xref: Wikipedia:Lumbar_plexus is_a: UBERON:0001815 ! lumbosacral nerve plexus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034988 name: tendon of obturator internus synonym: "obturator internus tendon" EXACT [FMA:22300] synonym: "tendon of obturator internus muscle" RELATED [FMA:22300] xref: FMA:22300 xref: SCTID:245172006 is_a: UBERON:0000043 {source="FMA"} ! tendon [Term] id: UBERON:0034989 name: amygdalopiriform transition area synonym: "amygdalopiriform TA" RELATED [NeuroNames:1971] synonym: "amygdalopiriform transition area" RELATED [NeuroNames:1971] synonym: "postpiriform transition area" EXACT [NeuroNames:1971] synonym: "postpiriform transition area" RELATED [NeuroNames:1971] xref: EMAPA:35125 xref: FMA:77608 xref: MA:0002918 xref: neuronames:1971 xref: PBA:10140 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001876 {source="MA"} ! amygdala [Term] id: UBERON:0034991 name: anterior cortical amygdaloid nucleus subset: human_reference_atlas synonym: "anterior cortical amygdaloid area" RELATED [DMBA:16000] xref: DMBA:16000 xref: EMAPA:35128 xref: MA:0002920 xref: neuronames:2639 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 {source="EMAPA"} ! amygdala relationship: part_of UBERON:0014741 {source="DMBA"} ! lateral pallium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0034993 name: basal ventral medial nucleus of thalamus synonym: "basal ventral medial thalamic nucleus" EXACT [EMAPA:35165] xref: EMAPA:35165 xref: FMA:84344 xref: HBA:4427 is_a: UBERON:0015233 ! nucleus of dorsal thalamus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001925 {source="HBA"} ! ventral lateral nucleus of thalamus relationship: part_of UBERON:0002739 {source="EMAPA"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0034994 name: hindbrain cortical intermediate zone synonym: "hindbrain mantle layer" EXACT [EMAPA:32917] xref: DHBA:12682 xref: EMAPA:32917 is_a: UBERON:0004040 ! cortical intermediate zone relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034995 name: jaw mesenchyme def: "Mesenchyme that is part of a developing jaw [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:32907 xref: EMAPA:35454 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0011595 ! jaw region [Term] id: UBERON:0034996 name: outer renal medulla loop of Henle synonym: "loop of Henle, outer medullary portion" EXACT [EMAPA:28322] xref: EMAPA:28322 is_a: UBERON:0034997 ! renal medulla loop of Henle relationship: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0034997 name: renal medulla loop of Henle synonym: "loop of Henle of renal medulla" EXACT [EMAPA:35460] synonym: "loop of Henle, medullary portion" EXACT [] xref: EMAPA:35460 is_a: UBERON:0001288 ! loop of Henle relationship: part_of UBERON:0000362 ! renal medulla [Term] id: UBERON:0034999 name: posterolateral cortical amygdaloid nucleus synonym: "cortical amygdalar nucleus, posterior part, lateral zone" RELATED [NeuroNames:3249] synonym: "PLCo" RELATED OMO:0003000 [DMBA:15999] synonym: "posterolateral cortical amygdalar nucleus" RELATED [NeuroNames:3249] synonym: "posterolateral cortical amygdaloid area" EXACT [DMBA:15999] synonym: "posterolateral cortical amygdaloid area" RELATED [NeuroNames:3249] synonym: "posterolateral part of the cortical nucleus" RELATED [NeuroNames:3249] xref: DMBA:15999 xref: EMAPA:35699 xref: MA:0002929 xref: neuronames:3249 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucleus [Term] id: UBERON:0035001 name: posteromedial cortical amygdaloid nucleus synonym: "cortical amygdalar nucleus, posterior part, medial zone" RELATED [NeuroNames:3250] synonym: "PMCo" RELATED OMO:0003000 [DMBA:15950] synonym: "posteromedial cortical amygdalar nucleus" RELATED [NeuroNames:3250] synonym: "posteromedial cortical amygdaloid nucleus" RELATED [NeuroNames:3250] synonym: "posteromedial part of the cortical nucleus" RELATED [NeuroNames:3250] xref: DMBA:15950 xref: EMAPA:35700 xref: MA:0002930 xref: neuronames:3250 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucleus [Term] id: UBERON:0035004 name: preputial swelling xref: EMAPA:35702 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005876 {source="EMAPA"} ! undifferentiated genital tubercle [Term] id: UBERON:0035005 name: preputial swelling of male synonym: "prepuce of male" RELATED [EMAPA:29220] xref: EMAPA:29220 is_a: UBERON:0035004 ! preputial swelling relationship: part_of UBERON:0006261 {source="EMAPA"} ! male genital tubercle [Term] id: UBERON:0035006 name: preputial swelling of female synonym: "prepuce of female" RELATED [EMAPA:30478] xref: EMAPA:30478 is_a: UBERON:0035004 ! preputial swelling relationship: part_of UBERON:0006233 {source="EMAPA"} ! female genital tubercle [Term] id: UBERON:0035007 name: nasal concha cartilage synonym: "turbinal cartilage" EXACT [] synonym: "turbinate bone primordium" EXACT [EMAPA:35890] synonym: "turbinate cartilage condensation" EXACT [] synonym: "unossified nasal turbinal" EXACT [] synonym: "unossified nasal turbinate" EXACT [] synonym: "unossified turbinate" EXACT [] xref: EMAPA:35890 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0035612 ! nasal turbinal property_value: external_ontology_notes "represented as a primordium in EMAPA - should be cartilage condensation" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0035011 name: central gray substance synonym: "central gray" RELATED [NeuroNames:1584] synonym: "central gray substance" RELATED [NeuroNames:1584] synonym: "central grey" RELATED [NeuroNames:1584] synonym: "central grey substance" EXACT [FMA:83134] synonym: "griseum centrale" RELATED OMO:0003011 [NeuroNames:1584] synonym: "griseum periventriculare" RELATED OMO:0003011 [NeuroNames:1584] synonym: "stratum griseum centrale" RELATED OMO:0003011 [NeuroNames:1584] synonym: "substantia grisea centralis" EXACT [FMA:TA] synonym: "substantia grisea centralis" RELATED OMO:0003011 [NeuroNames:1584] xref: FMA:83134 xref: neuronames:1584 is_a: UBERON:0002020 {source="FMA"} ! gray matter [Term] id: UBERON:0035013 name: temporal cortex association area synonym: "temporal association area" RELATED [] synonym: "temporal association areas" RELATED [NeuroNames:1821] synonym: "temporal association cortex" RELATED [NeuroNames:1821] synonym: "ventral temporal association areas" RELATED [NeuroNames:1821] xref: EMAPA:35852 xref: MA:0000943 xref: MBA:541 xref: neuronames:1821 is_a: UBERON:0035015 ! association cortex relationship: part_of UBERON:0016538 ! temporal cortex [Term] id: UBERON:0035014 name: functional part of brain def: "A brain region defined by functional criteria, e.g. auditory cortex, rather than by structural or histological criteria." [NLX:155513] xref: NLX:155513 is_a: UBERON:0002616 {source="NIFSTD"} ! regional part of brain [Term] id: UBERON:0035015 name: association cortex def: "Region of the cerebral cortex that integrates diverse sensory or motor information for purposeful action." [NIFSTD:oen_0001107] synonym: "association area" RELATED [NIFSTD:oen_0001107] synonym: "association areas of cortex" RELATED [NeuroNames:1348] synonym: "association cortex" RELATED [NeuroNames:1348] synonym: "cortical association areas" RELATED [NeuroNames:1348] xref: http://uri.neuinfo.org/nif/nifstd/oen_0001107 xref: neuronames:1348 is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain [Term] id: UBERON:0035016 name: tactile mechanoreceptor synonym: "contact receptor" EXACT [FMA:85595] xref: FMA:85595 is_a: UBERON:0012449 ! mechanoreceptor [Term] id: UBERON:0035017 name: nociceptor nerve ending def: "A peripheral terminal of a peripheral, afferent sensory pain receptor cell that is sensitive to injury or pain, usually caused by extreme thermal exposures, mechanical forces, or other noxious stimuli. The nociceptor nerve ending innervates target tissue and transduces noxious stimuli to the central nervous system via some axon(s)." [MESH:D009619] synonym: "nociceptor" RELATED [https://meshb.nlm.nih.gov/record/ui?ui=D009619] synonym: "pain receptor" RELATED [https://meshb.nlm.nih.gov/record/ui?ui=D009619] xref: MESH:D009619 is_a: UBERON:0012449 ! mechanoreceptor [Term] id: UBERON:0035018 name: thermoreceptor def: "Cellular receptors which mediate the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and NOCICEPTORS which detect cold or heat extreme enough to cause pain." [MESH:A08.800.550.700.840] synonym: "thermoreceptor" RELATED [MESH:A08.800.550.700.840] xref: MESH:D013823 xref: NCIT:C13822 xref: UMLS:C0039821 is_a: UBERON:0012451 ! sensory receptor [Term] id: UBERON:0035019 name: inferior olive, beta nucleus synonym: "beta subnucleus of the inferior olive" RELATED [NeuroNames:1755] synonym: "inferior olive beta subnucleus" EXACT [MA:0001041] synonym: "inferior olive, beta subnucleus" RELATED [NeuroNames:1755] synonym: "IOBe" RELATED OMO:0003000 [DHBA:12602] xref: DHBA:12602 xref: EMAPA:37611 {source="MA:th"} xref: MA:0001041 xref: neuronames:1755 is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0035020 name: left vagus X nerve trunk synonym: "anterior vagus X nerve trunk" RELATED [MA:0001151] synonym: "left vagus neural trunk" EXACT [FMA:18157] synonym: "trunk of left vagus" EXACT [FMA:18157] xref: EMAPA:37798 {source="MA:th"} xref: FMA:18157 xref: MA:0001151 is_a: UBERON:0003535 ! vagus X nerve trunk is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035021 name: right vagus X nerve trunk synonym: "posterior vagus X nerve trunk" RELATED [MA:0001152] synonym: "right vagus neural trunk" EXACT [FMA:18151] synonym: "trunk of right vagus" EXACT [FMA:18151] xref: EMAPA:37799 {source="MA:th"} xref: FMA:18151 xref: MA:0001152 is_a: UBERON:0003535 ! vagus X nerve trunk is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035022 name: trunk of segmental spinal nerve synonym: "segmental spinal nerve trunk" EXACT [MA:0001179] xref: MA:0001179 is_a: UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0005197 ! segmental spinal nerve [Term] id: UBERON:0035024 name: lateral spinal nucleus xref: DMBA:17690 xref: EMAPA:37634 {source="MA:th"} xref: MA:0002756 xref: neuronames:3159 xref: NLX:144473 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0035026 name: amygdalohippocampal transition area synonym: "AHTA" RELATED OMO:0003000 [DHBA:10380] xref: DHBA:10380 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035027 name: amygdalohippocampal area, magnocellular division synonym: "AHiAm" RELATED OMO:0003000 [HBA:265504452] xref: HBA:265504452 xref: PBA:10136 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035028 name: amygdalohippocampal area, parvocellular division synonym: "AHiAp" RELATED OMO:0003000 [HBA:265504456] xref: HBA:265504456 xref: PBA:10137 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035032 name: abdominal oblique muscle def: "Either the external or internal abdominal oblique muscles." [UBERON:cjm] synonym: "oblique abdominal muscle" EXACT [MA:0003024] xref: EMAPA:35603 xref: MA:0003024 xref: MESH:D000071596 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002461 {is_inferred="true"} ! anterior abdominal wall muscle [Term] id: UBERON:0035034 name: eyelid epithelium def: "An epithelium that is part of an eyelid [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:32758 xref: MA:0003163 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0035036 name: naris epithelium def: "An epithelium that is part of a naris [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:35959 xref: MA:0003172 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0000003 ! naris [Term] id: UBERON:0035037 name: jaw epithelium xref: EMAPA:32904 xref: MA:0003220 is_a: UBERON:0003929 ! digestive tract epithelium relationship: part_of UBERON:0011595 ! jaw region [Term] id: UBERON:0035038 name: carpal tunnel def: "The fibro-osseous passageway on the palmar side of the wrist that connects the distal forearm to the middle compartment of the deep plane of the palm." [Wikipedia:Carpal_tunnel] synonym: "carpal canal" EXACT [FMA:42352] synonym: "carpel tunnel" RELATED [Wikipedia:Carpal_tunnel] xref: FMA:42352 xref: Wikipedia:Carpal_tunnel is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0004452 ! carpal region [Term] id: UBERON:0035039 name: rectal artery synonym: "hemorrhoidal artery" EXACT [] xref: SCTID:277967008 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035040 name: superior rectal artery def: "The superior rectal artery (superior hemorrhoidal artery) is an artery that descends into the pelvis to supply blood to the rectum." [Wikipedia:Superior_rectal_artery] subset: human_reference_atlas synonym: "superior hemorrhoidal" RELATED [Wikipedia:Superior_rectal_artery] synonym: "superior hemorrhoidal artery" EXACT [FMA:14832] synonym: "superior hemorrhoidal artery" RELATED [Wikipedia:Superior_rectal_artery] synonym: "superior rectal" RELATED [Wikipedia:Superior_rectal_artery] xref: FMA:14832 xref: NCIT:C33677 xref: SCTID:244278008 xref: Wikipedia:Superior_rectal_artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0035039 ! rectal artery relationship: part_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035041 name: deep temporal artery def: "The deep temporal arteries, two in number, anterior and posterior, ascend between the Temporalis and the pericranium. They supply the muscle, and anastomose with the middle temporal artery. The anterior communicates with the lacrimal artery by means of small branches which perforate the zygomatic bone and great wing of the sphenoid." [Wikipedia:Deep_temporal_arteries] synonym: "anterior deep temporal artery" RELATED [Wikipedia:Deep_temporal_arteries] synonym: "deep temporal arteries" RELATED [Wikipedia:Deep_temporal_arteries] synonym: "deep temporal artery" RELATED [Wikipedia:Deep_temporal_arteries] synonym: "deep temporal branches" RELATED [Wikipedia:Deep_temporal_arteries] synonym: "posterior deep temporal artery" RELATED [Wikipedia:Deep_temporal_arteries] xref: FMA:49742 xref: SCTID:147965009 xref: Wikipedia:Deep_temporal_arteries is_a: UBERON:0001632 ! temporal artery relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0035042 name: middle temporal artery def: "The middle temporal artery arises immediately above the zygomatic arch, and, perforating the temporal fascia, gives branches to the Temporalis, anastomosing with the deep temporal branches of the internal maxillary. It occasionally gives off a zygomaticoC6rbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit." [Wikipedia:Middle_temporal_artery] subset: human_reference_atlas synonym: "middle temporal artery" RELATED [Wikipedia:Middle_temporal_artery] xref: FMA:49666 xref: SCTID:146854006 xref: Wikipedia:Middle_temporal_artery is_a: UBERON:0001632 ! temporal artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035043 name: temporal branch of lateral pretrosal artery def: "Part of lateral pretrosal artery which supplies blood to the eyelids." [AAO:0010495] synonym: "temporal artery" BROAD [AAO:0010495] xref: AAO:0010495 is_a: UBERON:0001632 ! temporal artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0014770 ! palpebral artery [Term] id: UBERON:0035044 name: olfactory cortex layer 3 def: "Deepest layer of olfactory cortex." [NLX:152611] xref: NLX:152611 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex [Term] id: UBERON:0035045 name: parotid gland intralobular duct def: "Any of the tubular canals of the parotid gland located within the parenchymal (secretory) tissue i.e. within lobules; both intercalated and striated (secretory) ducts are intralobular ducts." [MP:0013746] subset: human_reference_atlas is_a: UBERON:0001837 ! duct of salivary gland is_a: UBERON:0014719 ! intralobular duct relationship: part_of UBERON:0001831 ! parotid gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035046 name: parotid gland intercalated duct def: "Any of the small intralobular tubular canal that leads directly from the serous acinus of the parotid gland to a striated (secretory) duct; in mouse, the intercalated ducts are short and narrow and are lined by low cuboidal epithelial cells with large central nuclei; they secrete bicarbonate ion into and absorb chloride ion from the acinar product." [MP:0013747] subset: human_reference_atlas is_a: UBERON:0014727 ! intercalated duct of salivary gland is_a: UBERON:0035045 ! parotid gland intralobular duct relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035047 name: parotid gland striated duct def: "Any of the intralobular secretory duct of the parotid gland which connects an intercalated duct to an interlobular excretory duct; striated ducts are lined by cuboidal to columnar acidophilic cells and are so-named because of characteristic striations in the basal portions of the cells which are due to the alignment of mitochondria between deep infoldings of the basal cell membrane; the nucleus is in the central part of the cell above the striations; as they approach the excretory ducts, their diameter may exceed that of the acini; striated ducts reabsorb sodium and secrete potassium." [MP:0013748] subset: human_reference_atlas is_a: UBERON:0014729 ! striated duct of salivary gland is_a: UBERON:0035045 ! parotid gland intralobular duct relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035048 name: parotid gland excretory duct def: "Any of the interlobular excretory ducts of the parotid gland which are found in the connective tissue septa and formed by the union of several intralobular striated (secretory) ducts; ultimately, the excretory ducts of the parotid gland coalesce and form a single main excretory duct (Stensen's duct) that opens into the oral cavity; excretory ducts do not change the secretory product." [MP:0013750] subset: human_reference_atlas is_a: UBERON:0035049 ! excretory duct of salivary gland relationship: part_of UBERON:0001831 ! parotid gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035049 name: excretory duct of salivary gland def: "Any of the interlobular excretory ducts of a salivary gland which are found in the connective tissue septa and formed by the union of several intralobular striated (secretory) ducts[MP,generalized]." [MP:0013750] xref: FMA:60052 is_a: UBERON:0001837 ! duct of salivary gland is_a: UBERON:0035050 ! excretory duct [Term] id: UBERON:0035050 name: excretory duct xref: BTO:0006341 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000058 ! duct [Term] id: UBERON:0035053 name: interlobular duct of salivary gland xref: FMA:60053 is_a: UBERON:0014716 ! interlobular duct is_a: UBERON:0035049 ! excretory duct of salivary gland [Term] id: UBERON:0035073 name: duct of eccrine sweat gland def: "A duct made up of simple tubular epithelium that is part of an eccrine sweat gland. The main function of the duct of the eccrine sweat gland is the reabsorption of Na and Cl ions as sweat flows through the duct. It has two cell layers: basal and luminal. It is continuous with the secretory coil and goes towards the skin surface. The distal segment of the duct is relatively straight and connects with the acrosyringium in the epidermis. Most of the ion reabsorption occurs in the proximal part of the duct." [PMID:31608304] synonym: "ductal part of eccrine sweat gland" EXACT [FMA:70617] xref: FMA:70617 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0000423 ! eccrine sweat gland [Term] id: UBERON:0035074 name: duct of apocrine sweat gland synonym: "ductal part of apocrine sweat gland" EXACT [FMA:70643] xref: FMA:70643 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0000382 ! apocrine sweat gland [Term] id: UBERON:0035075 name: obsolete thymus subunit comment: Obsoleted as it is redundant with 'thymus lobe'. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/3158" xsd:anyURI is_obsolete: true replaced_by: UBERON:0005483 [Term] id: UBERON:0035076 name: parotid gland myoepithelium def: "Epithelium that consists of stellate-shaped contractile cells with long dendritic processes that surround the secretory acini and intercalated ducts of the parotid gland, usually found in the glandular epithelium as a thin layer above the basement membrane but generally beneath the luminal cells; they display features of both smooth muscle and epithelium, such as numerous microfilaments with focal densities in the cytoplasmic processes, and desmosomes which attach them to the epithelial cells; their functions include contraction when the gland is stimulated to secrete, compressing or reinforcing the underlying parenchymal cells, thus aiding in the expulsion of saliva and preventing damage to the other cells." [MGI:anna] subset: human_reference_atlas xref: EMAPA:37934 {source="MA:th"} is_a: UBERON:0000420 ! myoepithelium is_a: UBERON:0003360 ! epithelium of parotid gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035077 name: lateral nasal gland def: "Any of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those described for the major serous salivary glands; secretory contents of the LNG drain into the nasal vestibule; the LNG is a major site for the synthesis and secretion of odorant-binding proteins that serve as odorant carriers in nasal mucus; it also, synthesizes large amounts of immunoglobulin A, which is important for immune defense of the upper respiratory tract, and testosterone and salivary androgen-binding proteins, which are likely important in olfaction and reproductive behavior." [MP:0013582] synonym: "glandula nasalis lateralis" EXACT OMO:0003011 [MP:0013582] synonym: "LNG" RELATED OMO:0003000 [MP:0013582] synonym: "Steno gland" EXACT [MP:0013582] synonym: "Steno's gland" EXACT [MP:0013582] xref: EMAPA:37894 {source="MA:th"} is_a: UBERON:0012278 ! gland of nasal mucosa [Term] id: UBERON:0035078 name: parotid gland interlobular duct def: "Any of the excretory ducts of the parotid gland which are found in the connective tissue septa i.e. between lobules." [MP:0013749] subset: human_reference_atlas is_a: UBERON:0035048 ! parotid gland excretory duct is_a: UBERON:0035053 ! interlobular duct of salivary gland relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035079 name: deep intraparotid lymph node def: "The intraglandular deep parotid lymph nodes are a group of lymph nodes found inside the parotid gland." [Wikipedia:Intraglandular_deep_parotid_lymph_nodes] synonym: "deep intraparotid node" EXACT [] synonym: "intraglandular deep parotid lymph nodes" EXACT [] xref: SCTID:75040000 xref: Wikipedia:Intraglandular_deep_parotid_lymph_nodes is_a: UBERON:0035080 ! intraparotid lymph node [Term] id: UBERON:0035080 name: intraparotid lymph node synonym: "intraparotid node" EXACT [] xref: SCTID:27053001 is_a: UBERON:0015870 ! lymph node of head property_value: editor_note "requires review. Various subtypes include intraglandular, paraglandular, paraparotid" xsd:string [Term] id: UBERON:0035081 name: caudofemoralis longus synonym: "caudofemoralis longus muscle" EXACT [] synonym: "M. caudofemoralis longus" EXACT [] is_a: UBERON:0013221 ! caudofemoralis relationship: present_in_taxon NCBITaxon:28376 property_value: taxon_notes "In alligators, originates from tail base and inserts on 4th trochanter of femur[ISBN:0521629217]" xsd:string property_value: taxon_notes "In anolis, this muscle originates via fleshy fibers from the bases of the chevron bones and the ventral aspects of the transverse processes of Ca3-8 It is composed of two heads (ventral and dorsal) that are fused for most of their length and give rise to a common tendon. The common tendon divides to give rise to: (1) a broad and stout tendon that inserts onto the cranial aspect of the proximal one-fifth of the femur, and (2) a thin tendon that inserts onto the knee joint capsule, between the proximal aspects of the two bellies of m. gastrocnemius and the right and left femoral condyles[PMID:22753107]" xsd:string property_value: taxon_notes "primary extensor of the hip joint in lizards[PMID:22753107]" xsd:string [Term] id: UBERON:0035082 name: caudofemoralis brevis synonym: "caudofemoralis brevis muscle" EXACT [] synonym: "M. caudofemoralis brevis" EXACT [] is_a: UBERON:0013221 ! caudofemoralis relationship: present_in_taxon NCBITaxon:28376 property_value: taxon_notes "In Anolis, This muscle mostly originates via fleshy fibers from the ventrolateral aspect of the ilium and the ventral aspect of the transverse processes of Ca1-8 (note: the origin from Ca1 is tendinous). The fibers of m. ischiocaudalis join those of m. cocygeus inferior in the ventral midline at the level of Ca3-4 (in females) and Ca5-6 (in males)[PMID:22753107]" xsd:string [Term] id: UBERON:0035083 name: transverse process-bearing vertebra def: "A vertebra that has a transverse process." [http://orcid.org/0000-0002-6601-2165] synonym: "pygal vertebra" RELATED [PMID:22753107] synonym: "TP vertebra" RELATED [PMID:22753107] is_a: UBERON:0002412 ! vertebra [Term] id: UBERON:0035084 name: non-transverse process-bearing vertebra def: "A vertebra that does not have a transverse process." [http://orcid.org/0000-0002-6601-2165] synonym: "NTP vertebra" RELATED [PMID:22753107] synonym: "postpygal vertebra" RELATED [PMID:22753107] is_a: UBERON:0002412 ! vertebra [Term] id: UBERON:0035085 name: anatomical plane def: "A flat anatomical 2D surface that bisects an anatomical structure or an anatomical space." [CARO:0001013, FMA:242982, http://orcid.org/0000-0002-6601-2165, Wikipedia:Plane_(geometry)] comment: All anatomical planes are fiat anatomical boundaries - no morphological boundary could ever be a perfect plane. synonym: "fiat anatomical surface" RELATED [FMA:242982] xref: CARO:0001013 xref: FMA:242982 is_a: UBERON:0006984 {source="FMA"} ! anatomical surface [Term] id: UBERON:0035086 name: plane of autotomy def: "An anatomical plane that bisects a zone of weakness in an appendage. When autotamy occurs, the appendage divides along this plane." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] is_a: UBERON:0035085 ! anatomical plane relationship: part_of UBERON:0000026 ! appendage property_value: curator_notes "this class is intended for autotomy that bisects an appendage. Other forms of autotomy are possible: for example, a sea cucumber and autotomitize internal organs" xsd:string [Term] id: UBERON:0035087 name: fracture plane def: "A plane of autotomy that divides an appendage through a bone." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] synonym: "plane of autotomy bisecting bone" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0035086 ! plane of autotomy [Term] id: UBERON:0035088 name: vertebral fracture plane def: "A plane of autotomy that divides an appendage through a vertebral bone." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] synonym: "plane of autotomy bisecting vertebral bone" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0035087 ! fracture plane property_value: taxon_notes "Interestingly, zones of cartilage or connective tissue do not demarcate the fracture planes in A. carolinensis, as seen in other lizard taxa (Cox, 1969a; Hoffstetter and Gasc, 1969)[PMID:22753107]" xsd:string property_value: taxon_notes "Many authors (e.g., Holder, 1960; Mufti and Hafiz, 1972; Bellairs and Bryant, 1985; Russell and Bauer, 1992) have referred to the more proximal caudal vertebrae that lack fracture planes as 'pygal vertebrae' and the more distal caudal vertebrae that possess fracture planes as 'postpygal vertebrae' However, many lizard taxa lack fracture planes in their caudal vertebrae altogether, making this classification difficult to apply in these cases (Etheridge, 1967; Bellairs and Bryant, 1985). Furthermore, in some species (including A. carolinensis) the most distal of the transverse process-bearing vertebrae may possess fracture planes and should technically be called postpygal vertebrae, despite the fact that they more closely resemble the more proximal, non-fracture plane-bearing vertebrae in overall morphology (Cox, 1969a)[PMID:22753107]" xsd:string [Term] id: UBERON:0035089 name: plane of autotomy bisecting joint def: "A plane of autotomy that divides an appendage in the space between appendage bones." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] is_a: UBERON:0035086 ! plane of autotomy [Term] id: UBERON:0035090 name: plane of autotomy bisecting intervertebral joint def: "A plane of autotomy that divides an appendage in the space between vertebrae." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] is_a: UBERON:0035089 ! plane of autotomy bisecting joint [Term] id: UBERON:0035091 name: extrinsic post-anal tail muscle def: "A post-anal tail that attaches outside the tail." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003665 ! post-anal tail muscle [Term] id: UBERON:0035092 name: spinalis caudalis muscle def: "A muscle that originates via thin tendons from the proximal and dorsal aspects of the neural spines and inserts via fleshy fibers onto the lateral aspect of the base of the neural arch." [PMID:22753107] synonym: "M. spinalis caudalis" EXACT [] synonym: "spinalis caudalis" EXACT [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle relationship: never_in_taxon NCBITaxon:9606 {source="cjm"} relationship: part_of UBERON:0006071 ! caudal region relationship: present_in_taxon NCBITaxon:28376 property_value: function_notes "The m. spinalis caudalis is hypothesized to be a stabilizer of the vertebral column[PMID:22753107]" xsd:string [Term] id: UBERON:0035093 name: extensor caudae muscle synonym: "caudal extensor muscle" EXACT [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle [Term] id: UBERON:0035094 name: extensor caudae medialis muscle def: "A muscle that originates via thin tendons from the distal and dorsal aspects of the neural spines. The tendons course proximomedially to distolaterally and give rise to fleshy fibers that insert onto the lateral aspect of the neural arches of each of the vertebrae it crosses. The m. extensor caudae medialis is a continuation of m. semispinalis dorsi into the tail." [PMID:22753107] synonym: "extensor caudae medialis" EXACT [] synonym: "M. externsor caudae medialis" EXACT [] is_a: UBERON:0035093 ! extensor caudae muscle [Term] id: UBERON:0035095 name: extensor caudae lateralis muscle def: "A muscle that originates via a robust tendon from a tuberosity on the cranial aspect of the iliac crest and via fleshy fibers from the caudoventral aspect of the pelvis, the lateral aspects of the transverse processes of Ca2-8 or 9, and the horizontal intramuscular septum." [PMID:22753107] synonym: "extensor caudae lateralis" EXACT [] synonym: "M. externsor caudae lateralis" EXACT [] is_a: UBERON:0035093 ! extensor caudae muscle [Term] id: UBERON:0035096 name: fascia of tail is_a: UBERON:0003599 ! tail connective tissue is_a: UBERON:0008982 ! fascia [Term] id: UBERON:0035097 name: iliocaudalis muscle def: "A muscle that attaches to the iliac crest and to a caudal vertebra." [http://orcid.org/0000-0002-6601-2165, PMID:22753107] synonym: "iliocaudalis" EXACT [] synonym: "M. iliocaudalis" EXACT [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle relationship: part_of UBERON:0006071 ! caudal region property_value: taxon_notes "In anolis, This muscle lies deep to the m. extensor caudae medialis and originates via fleshy fibers from the iliac crest (Fig. 3A,B). It inserts via fleshy fibers onto the horizontal intramuscular septum as well as the chevron bones and dorsal aspect of the transverse processes of Ca3-6 or 7. The fibers of m. iliocaudalis are noticeably bipennate[PMID:22753107]" xsd:string [Term] id: UBERON:0035098 name: hemipenis transversus muscle def: "A muscle that overlies the hemipenis." [http://orcid.org/0000-0002-6601-2165, PMID:22753107] synonym: "M. transversus penis" RELATED [] synonym: "transversus penis" RELATED [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle relationship: part_of UBERON:0008812 ! hemipenis [Term] id: UBERON:0035099 name: transversus perinei muscle def: "A muscle in females that overlies the soft tissue related to the cloaca, where the hemipenes are located in males." [http://orcid.org/0000-0002-6601-2165, PMID:22753107] synonym: "M. transversus perinei" RELATED [] synonym: "transversus perinei" RELATED [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle [Term] id: UBERON:0035100 name: retractor penis magnus muscle def: "A tube-like muscle attaches to the distal tip of the hemipenis and inserts onto the transverse processes of a caudal vertebra." [http://orcid.org/0000-0002-6601-2165, PMID:22753107] synonym: "M. retractor penis magnus" RELATED [] synonym: "retractor penis magnus" RELATED [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle property_value: function_notes "Like that of m. transversus penis, the function of m. retractor penis magnus is difficult to deduce. However, this muscle likely acts to help retract the hemipenis into the cloaca after copulation (Arnold, 1984)[PMID:22753107]" xsd:string [Term] id: UBERON:0035102 name: transverse process of caudal vertebra def: "A transverse process that is part of a caudal vertebra." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001077 ! transverse process of vertebra relationship: part_of UBERON:0001095 ! caudal vertebra [Term] id: UBERON:0035103 name: perineal body smooth muscle muscle tissue synonym: "perineal body muscle" EXACT [EMAPA:18923] xref: EMAPA:18923 is_a: UBERON:0004231 ! anal region smooth muscle relationship: part_of UBERON:0004486 ! musculature of perineum relationship: part_of UBERON:0006654 ! perineal body [Term] id: UBERON:0035104 name: raphe of penis synonym: "penile raphe" EXACT [FMA:19646] synonym: "raphe penis" EXACT OMO:0003011 [FMA:19646, FMA:TA] xref: FMA:19646 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0000989 ! penis relationship: part_of UBERON:0035106 ! raphe of perineum [Term] id: UBERON:0035105 name: sac of scrotum def: "Any of the two testis-carrying compartments of the scrotum." [http://orcid.org/0000-0002-6601-2165] synonym: "scrotal comartment" EXACT [] synonym: "scrotal sac" EXACT [FMA:18251] synonym: "testis comartment" EXACT [] xref: FMA:18251 is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001300 ! scrotum [Term] id: UBERON:0035106 name: raphe of perineum def: "The perineal raphe extends from the anus, through the mid-line of the scrotum (scrotal raphe) and upwards through the posterior mid-line aspect of the penis (penile raphe)." [Wikipedia:Perineal_raphe] synonym: "perineal raphe" EXACT [FMA:20244] synonym: "raphe perinealis" EXACT OMO:0003011 [Wikipedia:Perineal_raphe] synonym: "raphe perinei" EXACT OMO:0003011 [Wikipedia:Perineal_raphe] xref: FMA:20244 xref: Wikipedia:Perineal_raphe is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold property_value: development_notes "It is the result of a fetal developmental phenomenon whereby the scrotum (the developmental equivalent of the labia in females) and penis close toward the midline and fuse. The resulting ridge of tissue is evident as the perineal raphe" xsd:string [Term] id: UBERON:0035108 name: temporalis fascia def: "The temporal fascia covers the Temporalis muscle. It is a strong, fibrous investment, covered, laterally, by the Auricularis anterior and superior, by the galea aponeurotica, and by part of the Orbicularis oculi. The superficial temporal vessels and the auriculotemporal nerve cross it from below upward. Above, it is a single layer, attached to the entire extent of the superior temporal line; but below, where it is fixed to the zygomatic arch, it consists of two layers, one of which is inserted into the lateral, and the other into the medial border of the arch. A small quantity of fat, the orbital branch of the superficial temporal artery, and a filament from the zygomatic branch of the maxillary nerve, are contained between these two layers. It affords attachment by its deep surface to the superficial fibers of the Temporalis." [Wikipedia:Temporal_fascia] comment: Request new term but the definition needs revision. synonym: "fascia of temporalis" EXACT [FMA:53996] synonym: "temporal fascia" EXACT [MFMO:0000105] synonym: "temporalis fascia" EXACT [FMA:53996] xref: FMA:53996 xref: MFMO:0000105 xref: Wikipedia:Temporal_fascia is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0008982 ! fascia relationship: part_of UBERON:0001456 {source="cjm"} ! face [Term] id: UBERON:0035109 name: plantar nerve def: "A nerve that innervates the sole of the foot. Planar nerves arise from the posterior branch of the tibial nerve." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Plantar_nerve] comment: Divided into medial and plantar based on the location of the foot supplied synonym: "nerve, plantar" RELATED [] xref: https://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray834.svg/180px-Gray834.svg.png xref: NCIT:C77674 xref: SCTID:181074000 xref: UMLS:C0446824 xref: Wikipedia:Plantar_nerve is_a: UBERON:0003431 ! leg nerve [Term] id: UBERON:0035110 name: lateral plantar nerve def: "A plantar nerve that supplies the lateral side of the plantar part of the foot, including pedal digit 5." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lateral_plantar_nerve] synonym: "external plantar nerve" EXACT [FMA:44724] synonym: "nervus plantaris lateralis" EXACT OMO:0003011 [Wikipedia:Lateral_plantar_nerve] xref: FMA:44724 xref: SCTID:181083005 xref: Wikipedia:Lateral_plantar_nerve is_a: UBERON:0035109 ! plantar nerve [Term] id: UBERON:0035111 name: medial plantar nerve def: "A plantar nerve that supplies the medial side of the plantar part of the foot, including pedal digit 1." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lateral_plantar_nerve] synonym: "internal plantar nerve" EXACT [FMA:44716] synonym: "nervus plantaris medialis" EXACT OMO:0003011 [Wikipedia:Medial_plantar_nerve] xref: FMA:44716 xref: SCTID:181082000 xref: Wikipedia:Medial_plantar_nerve is_a: UBERON:0035109 ! plantar nerve [Term] id: UBERON:0035112 name: intrinsic muscle def: "Any of the muscles that are entirely within the body part or segment moved by them." [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] subset: grouping_class is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: editor_note "ideally we would like to classify under this class automatically but this is difficult to do without applying external rules. Note that logical definitions that use this class as a genus may not be strictly correct" xsd:string [Term] id: UBERON:0035113 name: central part of mediodorsal nucleus of the thalamus synonym: "MDc" RELATED OMO:0003000 [MBA:617] synonym: "mediodorsal nucleus of the thalamus, central part" EXACT [MBA:617] xref: MBA:617 is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0035114 name: lateral part of mediodorsal nucleus of the thalamus synonym: "MDl" RELATED OMO:0003000 [MBA:626] synonym: "mediodorsal nucleus of the thalamus, lateral part" EXACT [MBA:626] xref: MBA:626 is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0035115 name: diastema between central incisors def: "A space or gap between the left and right central incisors, on either the upper or lower jaw." [http://orcid.org/0000-0002-6601-2165] synonym: "interdental space, central incisors" EXACT [] synonym: "midline diastema" EXACT [] is_a: UBERON:0035119 ! diastema between incisors [Term] id: UBERON:0035116 name: diastema between upper central incisors def: "A space or gap between the left and right central incisors on the upper jaw." [http://orcid.org/0000-0002-6601-2165] synonym: "interdental space between maxillary central incisors" EXACT [] synonym: "interdental space, upper central incisors" EXACT [] synonym: "midline maxillary diastema" EXACT [] is_a: UBERON:0035115 ! diastema between central incisors relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0035117 name: diastema between lower central incisors def: "A space or gap between the left and right central incisors on the lower jaw." [http://orcid.org/0000-0002-6601-2165] synonym: "interdental space between mandibular central incisors" EXACT [] synonym: "interdental space, lower central incisors" EXACT [] synonym: "midline mandibular diastema" EXACT [] is_a: UBERON:0035115 ! diastema between central incisors relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0035118 name: material entity in digestive tract def: "Any material entity that is located in the digestive tract. This includes undigested food and liquid as well as unexcreted waste products. It also includes other entities such as ingested stones used to aid digestion. Any microbial cells or cell populations are also included." [https://github.com/EnvironmentOntology/envo/issues/110] synonym: "digestive tract contents" EXACT OMO:0003004 [] synonym: "ingested material entity" RELATED [] is_a: UBERON:0000061 ! anatomical structure property_value: editor_note "Note that we treat any material entity that is ingested as an anatomical structure by defintion, although this may be expanding the CARO usage somewhat" xsd:string [Term] id: UBERON:0035119 name: diastema between incisors def: "A space or gap any two incisors. This may be a midline diastema between central incisors, or a diastema located entirely in a single jaw quadrant between lateral incisors." [http://orcid.org/0000-0002-6601-2165] synonym: "incisor diastema" EXACT [] synonym: "interdental space, incisors" EXACT [] is_a: UBERON:0012111 ! diastema [Term] id: UBERON:0035120 name: fauces def: "Lateral walls of the oropharynx that are located medial to the palatoglossal folds." [http://www.avdc.org/Nomenclature.pdf] xref: FMA:55019 xref: SCTID:361362001 is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0035122 name: interincisive suture def: "Median palatine suture of the palatine processes of the maxillary bones, and the median suture of the palatine bones." [http://www.avdc.org/Nomenclature.pdf] synonym: "incisive suture" RELATED [FMA:75777] synonym: "midline of hard palate" RELATED [] xref: FMA:75777 xref: SCTID:245781007 is_a: UBERON:4200215 ! suture relationship: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0035123 name: palatomaxillary suture def: "Line of union, in the floor of the orbit, between the orbital process of the palatine bone and the orbital surface of the maxilla." [http://medical-dictionary.thefreedictionary.com/palatomaxillary+suture] synonym: "palatomaxillary suture of skull" EXACT [FMA:52964] xref: FMA:52964 xref: Wikipedia:Palatomaxillary_suture is_a: UBERON:4200215 ! suture relationship: part_of UBERON:0001697 ! orbit of skull property_value: external_definition "The palatomaxillary suture is a suture separating the maxilla from the palatine bone." xsd:string {source="Wikipedia:Palatomaxillary_suture"} [Term] id: UBERON:0035124 name: palatoethmoidal suture def: "A line of junction of the orbital process of the palatine bone and the orbital plate of the ethmoid." [http://medical-dictionary.thefreedictionary.com/palatoethmoidal+suture] synonym: "palato-ethmoidal suture" EXACT [FMA:52965] synonym: "palatoethmoidal suture of skull" EXACT [FMA:52965] synonym: "sutura palatoethmoidalis" EXACT OMO:0003011 [FMA:52965, FMA:TA] xref: FMA:52965 is_a: UBERON:4200215 ! suture [Term] id: UBERON:0035126 name: transverse palatine suture def: "The line of junction between the processes of the maxilla and the horizontal parts of the palatine bones that form the hard palate." [http://medical-dictionary.thefreedictionary.com/transverse+palatine+suture] synonym: "transverse palatine suture of skull" EXACT [FMA:52971] xref: FMA:52971 is_a: UBERON:4200215 ! suture relationship: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0035127 name: suture of hard palate def: "Any of the sutures of the hard palate." [http://www.merriam-webster.com/medical/palatine%20suture] synonym: "palatine suture" EXACT [http://www.merriam-webster.com/medical/palatine%20suture] is_a: UBERON:0003685 ! cranial suture relationship: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0035128 name: manus cartilage element synonym: "hand cartilage condensation" EXACT [EMAPA:32631] xref: EMAPA:32631 is_a: UBERON:0010883 ! forelimb cartilage element is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0009523 {source="EMAPA-modified"} ! mesenchyme of handplate relationship: part_of UBERON:0002398 ! manus [Term] id: UBERON:0035129 name: pes cartilage element synonym: "foot cartilage condensation" EXACT [EMAPA:32657] xref: EMAPA:32657 is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0003328 {source="EMAPA-modified"} ! mesenchyme of footplate relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0035130 name: auditory ossicle endochondral element synonym: "auditory skeletal element" EXACT [] synonym: "ear ossicle element" RELATED [] synonym: "ear ossicles element" RELATED OMO:0003004 [] synonym: "middle ear ossicle element" EXACT [MP:0005105] synonym: "middle ear skeletal element" RELATED [] synonym: "ossicle element" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle] synonym: "ossicle element of ear" RELATED [] synonym: "ossicle element of inner ear" RELATED [] synonym: "ossicular chain element" RELATED OMO:0003004 [] is_a: UBERON:0010363 ! endochondral element relationship: develops_from UBERON:0003099 {source="PMID:11237469", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! cranial neural crest relationship: part_of UBERON:0001756 {source="MA"} ! middle ear relationship: part_of UBERON:0008895 {source="PMID:11523816"} ! splanchnocranium [Term] id: UBERON:0035131 name: auditory ossicle cartilage element synonym: "ossicle cartilage condensation" EXACT [EMAPA:35979] xref: EMAPA:35979 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0035132 name: auditory ossicle pre-cartilage element synonym: "ossicle pre-cartilage condensation" EXACT [EMAPA:35982] xref: EMAPA:35982 is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0035133 name: longitudinal arch of pes def: "A curved region of the skeleton of the pes (foot) formed by the tarsal and metatarsal bones." [Wikipedia:Arches_of_the_foot#Longitudinal_arches] synonym: "longitudinal arch of foot" EXACT [FMA:75030] xref: FMA:75030 xref: Wikipedia:Arches_of_the_foot is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0002387 ! pes relationship: present_in_taxon NCBITaxon:9606 relationship: present_in_taxon NCBITaxon:9780 {source="PMC2048995"} property_value: external_ontology_notes "in FMA this is modeled as an anatomical line, here we model as an actual subdivision of the skeletal system, containing a row of bones as parts, arranged in a particular configuration" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0035139 name: anterior nasal spine of maxilla def: "A pointed projection at the front extremity of the intermaxillary suture." [http://medical-dictionary.thefreedictionary.com/anterior+nasal+spine] subset: human_reference_atlas synonym: "anterior nasal spine" RELATED [] synonym: "spina nasalis anterior corporis maxillae" EXACT OMO:0003011 [FMA:75770, FMA:TA] xref: FMA:75770 xref: Wikipedia:Anterior_nasal_spine is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035142 name: preputial space of male xref: EMAPA:36342 is_a: UBERON:0035144 ! preputial space relationship: part_of UBERON:0001332 {source="EMAPA"} ! prepuce of penis [Term] id: UBERON:0035143 name: preputial space of female is_a: UBERON:0035144 ! preputial space relationship: part_of UBERON:0005299 ! prepuce of clitoris [Term] id: UBERON:0035144 name: preputial space def: "Space between the prepuce and glans penis or clitoris." [http://orcid.org/0000-0002-6601-2165] synonym: "preputial cavity" EXACT [FMA:28606] xref: FMA:28606 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0011374 ! prepuce [Term] id: UBERON:0035145 name: nucleus sacci vasculosi is_a: UBERON:0000125 ! neural nucleus [Term] id: UBERON:0035146 name: tractus sacci vasculosi is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0035147 name: axochord def: "A medial muscle found in the ventral midline of annelid embryos." [https://github.com/obophenotype/uberon/issues/574, https://orcid.org/0000-0003-3308-6245, PMID:25214631] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000922 ! embryo relationship: transformation_of UBERON:0035148 ! presumptive axochord [Term] id: UBERON:0035148 name: presumptive axochord def: "Contractile mesodermal midline cells in the ventral midline of annelid embryos that give rise to the axochord." [https://github.com/obophenotype/uberon/issues/574, https://orcid.org/0000-0003-3308-6245, PMID:25214631] synonym: "axochord pre-muscle mass" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005865 ! pre-muscle condensation [Term] id: UBERON:0035149 name: gingival epithelial attachment subset: human_reference_atlas xref: SCTID:85036004 is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001949 ! gingival epithelium relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035150 name: superior cerebral vein def: "The Superior Cerebral Veins, eight to twelve in number, drain the superior, lateral, and medial surfaces of the hemispheres, and are mainly lodged in the sulci between the gyri, but some run across the gyri. They open into the superior sagittal sinus; the anterior veins runs nearly at right angles to the sinus; the posterior and larger veins are directed obliquely forward and open into the sinus in a direction more or less opposed to the current of the blood contained within it." [Wikipedia:Superior_cerebral_veins] subset: human_reference_atlas synonym: "superior cerebral vein" RELATED [Wikipedia:Superior_cerebral_veins] xref: FMA:50978 xref: SCTID:244393005 xref: Wikipedia:Superior_cerebral_veins is_a: UBERON:0016559 {source="FMA"} ! superficial cerebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035151 name: dorsal cerebral vein xref: EMAPA:37142 {source="MA:th"} xref: MA:0002103 is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0035152 name: internal cerebral vein def: "The internal cerebral veins (veins of Galen; deep cerebral veins) drain the deep parts of the hemisphere and are two in number; each is formed near the interventricular foramen by the union of the terminal and choroid veins. They run backward parallel with one another, between the layers of the tela chorioidea of the third ventricle, and beneath the splenium of the corpus callosum, where they unite to form a short trunk, the great cerebral vein; just before their union each receives the corresponding basal vein." [Wikipedia:Internal_cerebral_veins] subset: human_reference_atlas synonym: "internal cerebral vein" RELATED [Wikipedia:Internal_cerebral_veins] xref: FMA:51003 xref: NCIT:C32838 xref: SCTID:244397006 xref: UMLS:C0149579 xref: Wikipedia:Internal_cerebral_veins is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035153 name: dorsolateral prefrontal cortex layer 1 def: "Most superficial layer of the Dorsolateral Prefrontal Cortex (DLPFC)." [NLX:156731] synonym: "dlPF1" RELATED OMO:0003000 [] synonym: "dlPFC1" RELATED OMO:0003000 [] synonym: "layer I of dorsolateral prefrontal cortex" EXACT [] xref: NLX:156731 is_a: UBERON:0005390 ! cortical layer I relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035154 name: dorsolateral prefrontal cortex layer 2 def: "Layer 2 of neocortex lying just deep to superficial layer 1 of dorsolateral prefrontal cortex." [NLX:156732] synonym: "dlPF2" RELATED OMO:0003000 [] synonym: "dlPFC2" RELATED OMO:0003000 [] synonym: "layer II of dorsolateral prefrontal cortex" EXACT [PBA:12986] xref: NLX:156732 xref: PBA:12986 is_a: UBERON:0005391 ! cortical layer II relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035155 name: dorsolateral prefrontal cortex layer 3 def: "Layer 3 of dorsolateral prefrontal cortex lying deep to the layer 2 and cytoarchitectonically defined by numerous small pyramidal neurons." [NLX:156733] synonym: "dlPF3" RELATED OMO:0003000 [] synonym: "dlPFC3" RELATED OMO:0003000 [] synonym: "layer III of dorsolateral prefrontal cortex" EXACT [PBA:12987] xref: NLX:156733 xref: PBA:12987 is_a: UBERON:0005392 ! cortical layer III relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035156 name: dorsolateral prefrontal cortex layer 4 def: "Layer 4 of dorsolateral prefrontal cortex lying deep to the external pyramidal layer and cytoarchitectonically defined by presence of small cells." [NLX:156734] synonym: "dlPF4" RELATED OMO:0003000 [] synonym: "dlPFC4" RELATED OMO:0003000 [] synonym: "granular layer IV of dorsolateral prefrontal cortex" EXACT [PBA:12988] xref: NLX:156734 xref: PBA:12988 is_a: UBERON:0005393 ! cortical layer IV relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035157 name: dorsolateral prefrontal cortex layer 5 def: "Layer 5 of dorsolateral prefrontal cortex lying deep to the internal granule cell layer 4 and cytoarchitectonically divisible into layers 5a and 5b. Layer 5a is characterized by the predominance of large pyramidal cell bodies. Layer 5b is pale in comparison." [NLX:156735] synonym: "dlPF5" RELATED OMO:0003000 [] synonym: "dlPFC5" RELATED OMO:0003000 [] synonym: "layer V of dorsolateral prefrontal cortex" EXACT [PBA:12989] xref: NLX:156735 xref: PBA:12989 is_a: UBERON:0005394 ! cortical layer V relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035158 name: dorsolateral prefrontal cortex layer 6 def: "Innermost layer of dorsolateral prefrontal cortex lying deep to the internal pyramidal cell layer 5. It is cytoarchitectonically defined in the DLPFC by cells of varying sizes. DLPFC layer 6a is characterized by more neurons and layer 6b has comparatively more glia." [NLX:156736] synonym: "dlPF6" RELATED OMO:0003000 [] synonym: "dlPFC6" RELATED OMO:0003000 [] synonym: "layer VI of dorsolateral prefrontal cortex" EXACT [PBA:12990] xref: NLX:156736 xref: PBA:12990 is_a: UBERON:0005395 ! cortical layer VI relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035159 name: entire surface of organism def: "Anatomical surface, which is the external surface of the whole body. Examples: There is only one body surface." [FMA:61695] synonym: "surface of body" EXACT [FMA:61695] xref: FMA:61695 xref: NCIT:C29667 xref: SCTID:261060002 xref: UMLS:C0489451 is_a: UBERON:0006984 ! anatomical surface [Term] id: UBERON:0035162 name: infraclavicular lymph node def: "A lymph node located in the area below the clavicle." [ncithesaurus:Infraclavicular_Lymph_Node] synonym: "deltopectoral lymph node" EXACT [FMA:14193] synonym: "deltopectoral node" EXACT [FMA:14193] synonym: "infraclavicular node" EXACT [FMA:14193] synonym: "nodus lymphaticus infraclavicularis axillae" EXACT [FMA:14193] xref: FMA:14193 xref: NCIT:C63705 xref: SCTID:9659009 xref: UMLS:C0229743 xref: Wikipedia:Deltopectoral_lymph_nodes is_a: UBERON:0015917 {source="FMA"} ! superficial lymph node [Term] id: UBERON:0035165 name: posterior surface of prostate def: "The flattened aspect of the prostate with a slight furrow facing the rectum and anus." [ncithesaurus:Posterior_Surface_of_the_Prostate] synonym: "facies posterior (prostatae)" EXACT [FMA:19592] synonym: "facies posterior prostatae" EXACT OMO:0003011 [FMA:19592, FMA:TA] synonym: "posterior surface of prostate gland" EXACT [FMA:19592] xref: FMA:19592 xref: NCIT:C13095 xref: SCTID:279697005 xref: UMLS:C0227961 is_a: UBERON:0035480 ! surface of prostate [Term] id: UBERON:0035168 name: infraclavicular region def: "The region below the clavicle." [ncithesaurus:Infraclavicular_Region] synonym: "infraclavicular part of chest" EXACT [FMA:61479] synonym: "infraclavicular region" EXACT [FMA:61479] xref: FMA:61479 xref: NCIT:C25268 xref: SCTID:181036008 xref: UMLS:C0230108 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0035171 name: obturator lymph node synonym: "obturator node" EXACT [FMA:16656] xref: FMA:16656 xref: NCIT:C88141 xref: SCTID:245368003 xref: UMLS:C0229822 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0035174 name: right ear def: "The organ of hearing located on the right side of the head." [ncithesaurus:Right_Ear] xref: FMA:53641 xref: NCIT:C81285 xref: SCTID:368570004 xref: UMLS:C0229298 is_a: UBERON:0001690 ! ear is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035177 name: abdominal part of esophagus def: "Clinical esophageal segment composed of smooth muscle. It corresponds to the inferior part of the lower third topographic segment of the esophagus." [ncithesaurus:Abdominal_Esophagus] synonym: "abdominal esophagus" EXACT [FMA:9397] synonym: "abdominal part of oesophagus" EXACT [FMA:9397] synonym: "pars abdominalis (oesophagus)" EXACT [FMA:9397] synonym: "pars abdominalis oesophageae" EXACT OMO:0003011 [FMA:9397, FMA:TA] synonym: "T11 part of esophagus" EXACT [FMA:9397] synonym: "t11 segment of esophagus" RELATED [FMA:9397] xref: FMA:9397 xref: NCIT:C12252 xref: SCTID:245407007 xref: UMLS:C0227190 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus [Term] id: UBERON:0035180 name: sigmoid artery def: "The sigmoid arteries, two or three in number, run obliquely downward and to the left behind the peritoneum and in front of the Psoas major, ureter, and internal spermatic vessels. Their branches supply the lower part of the descending colon, the iliac colon, and the sigmoid or pelvic colon; anastomosing above with the left colic, and below with the superior hemorrhoidal artery." [Wikipedia:Sigmoid_arteries] subset: human_reference_atlas synonym: "inferior left colic artery" EXACT [FMA:14830] xref: FMA:14830 xref: NCIT:C33549 xref: SCTID:265956005 xref: UMLS:C0226330 xref: Wikipedia:Sigmoid_arteries is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035183 name: calcarine artery def: "An artery that branches from the medial occipital artery that aligns with the calcarine sulcus." [ncithesaurus:Calcarine_Artery] subset: human_reference_atlas synonym: "calcarine branch of medial occipital artery" EXACT [FMA:50655] synonym: "ramus calcarinus (arteria occipitalis medialis)" EXACT OMO:0003011 [FMA:50655, FMA:TA] xref: FMA:50655 xref: NCIT:C32251 xref: SCTID:2703009 xref: UMLS:C0226253 is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035186 name: valve of foramen ovale synonym: "foramen ovale valve" EXACT [FMA:75348] xref: FMA:75348 xref: NCIT:C34326 xref: SCTID:188958004 xref: UMLS:C1519951 is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space relationship: part_of UBERON:0004754 ! foramen ovale of heart [Term] id: UBERON:0035195 name: plantar metatarsal artery def: "The plantar metatarsal arteries (digital branches) are four in number, and run forward between the metatarsal bones and in contact with the Interossei. Each divides into a pair of plantar digital arteries which supply the adjacent sides of the toes. Near their points of division each sends upward an anterior perforating branch to join the corresponding dorsal metatarsal artery. The first plantar metatarsal artery (arteria princeps hallucis) springs from the junction between the lateral plantar and deep plantar arteries and sends a digital branch to the medial side of the first toe. The digital branch for the lateral side of the fifth toe arise from the lateral plantar artery near the base of the fifth metatarsal bone." [Wikipedia:Plantar_metatarsal_arteries] synonym: "plantar metatarsal branch of plantar arch" EXACT [FMA:43956] xref: FMA:43956 xref: NCIT:C52743 xref: SCTID:244343006 xref: UMLS:C0226480 xref: Wikipedia:Plantar_metatarsal_arteries is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! hindlimb blood vessel relationship: part_of UBERON:0001538 {source="FMA"} ! posterior tibial artery [Term] id: UBERON:0035198 name: superficial lymphatic vessel def: "The tubules that carry lymph throughout the body that are just beneath the surface of the skin." [ncithesaurus:Superficial_Lymphatic_Vessel] synonym: "superficial lymph vessel" EXACT [FMA:52011] xref: FMA:52011 xref: NCIT:C33663 xref: SCTID:20315002 xref: UMLS:C1282745 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0035549 ! vasculature of integument [Term] id: UBERON:0035201 name: gastrocolic ligament def: "A major portion of the greater omentum between the stomach and the transverse colon." [ncithesaurus:Gastrocolic_Ligament] xref: FMA:16552 xref: NCIT:C32667 xref: SCTID:260539007 xref: UMLS:C0230229 is_a: UBERON:0034696 ! fold of peritoneum relationship: part_of UBERON:0005448 {source="FMA"} ! greater omentum [Term] id: UBERON:0035204 name: occipital lymph node def: "A lymph node located in the back of the head adjacent to the trapezius muscle." [ncithesaurus:Occipital_Lymph_Node] synonym: "occipital node" EXACT [FMA:61214] xref: FMA:61214 xref: NCIT:C98188 xref: SCTID:245326003 xref: UMLS:C0229711 xref: Wikipedia:Occipital_lymph_nodes is_a: UBERON:0015870 ! lymph node of head is_a: UBERON:0015917 {source="FMA"} ! superficial lymph node [Term] id: UBERON:0035207 name: deep fibular nerve def: "A branch of the common peroneal nerve. It innervates the ankle and toes." [ncithesaurus:Deep_Peroneal_Nerve] synonym: "deep peroneal nerve" EXACT [FMA:44771] xref: FMA:44771 xref: NCIT:C92602 xref: SCTID:181081007 xref: UMLS:C0228949 xref: Wikipedia:Deep_fibular_nerve is_a: UBERON:0003431 ! leg nerve is_a: UBERON:0035652 ! fibular nerve [Term] id: UBERON:0035210 name: paracolic gutter def: "The paracolic gutters (paracolic sulci, paracolic recesses) are spaces between the colon and the abdominal wall. There are two paracolic gutters: The right lateral paracolic gutter. The left lateral paracolic gutter. These gutters are clinically important because they allow a passage for infectious fluids from different compartments of the abdomen. For example; fluid from an infected appendix can track up the right paracolic gutter to the hepatorenal recess." [Wikipedia:Paracolic_gutters] synonym: "paracolic sulcus" EXACT [FMA:14719] xref: FMA:14719 xref: NCIT:C89787 xref: SCTID:243980001 xref: UMLS:C0230267 xref: Wikipedia:Paracolic_gutters is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0035213 name: basal zone of heart def: "The superior portion of the heart located opposite to the apical portion. It is formed mainly by the left atrium." [ncithesaurus:Base_of_the_Heart] synonym: "anatomical base of heart" EXACT [FMA:223286] synonym: "base of heart" EXACT [FMA:223286] synonym: "basis cordis" EXACT OMO:0003011 [FMA:223286, FMA:TA] xref: FMA:223286 xref: NCIT:C48589 xref: SCTID:277701000 xref: UMLS:C0225810 xref: Wikipedia:Base_of_the_heart is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000948 ! heart property_value: external_definition "Zone of heart which has as its parts the left atrium and the inflow part of right atrium." xsd:string {source="FMA:223286"} [Term] id: UBERON:0035216 name: thoracic part of esophagus def: "Zone of esophagus located in the thorax." [FMA:9396] synonym: "pars thoracica (oesophagus)" EXACT OMO:0003011 [FMA:9396, FMA:TA] synonym: "pars thoracica oesophageae" EXACT OMO:0003011 [FMA:9396, FMA:TA] synonym: "thoracic esophagus" EXACT [FMA:9396] synonym: "thoracic part of oesophagus" EXACT [FMA:9396] xref: FMA:9396 xref: NCIT:C12251 xref: SCTID:245406003 xref: UMLS:C0227188 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus [Term] id: UBERON:0035219 name: parasternal lymph node def: "Any of the lymph nodes of the breast located under the ribcage, near the sternum." [ncithesaurus:Internal_Mammary_Lymph_Node] synonym: "internal mammary lymph node" EXACT [FMA:5849] synonym: "nodus parasternale" EXACT [FMA:5849] synonym: "parasternal node" EXACT [FMA:5849] xref: FMA:5849 xref: NCIT:C32853 xref: SCTID:421997006 xref: UMLS:C0229755 xref: Wikipedia:Parasternal_lymph_nodes is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0035222 name: posterior parietal artery subset: human_reference_atlas xref: FMA:50488 xref: NCIT:C33372 xref: SCTID:44894007 xref: UMLS:C0226227 is_a: UBERON:0035350 ! branch of middle cerebral artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035225 name: anterior temporal artery def: "A branch of the middle cerebral artery that supplies blood to the anterior part of the temporal lobe." [ncithesaurus:Anterior_Temporal_Artery] subset: human_reference_atlas xref: FMA:50382 xref: NCIT:C32113 xref: SCTID:44310009 xref: UMLS:C0226228 is_a: UBERON:0001632 {source="FMA"} ! temporal artery is_a: UBERON:0035350 ! branch of middle cerebral artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035228 name: tonsillar fossa def: "Between the plica triangularis and the surface of the palatine tonsils is a space known as the tonsillar fossa (or tonsillar sinus); in many cases, however, this sinus is obliterated by its walls becoming adherent." [Wikipedia:Tonsillar_fossa] synonym: "tonsillar bed" EXACT [FMA:55041] synonym: "tonsillar sinus" EXACT [FMA:55041] xref: FMA:55041 xref: NCIT:C12235 xref: SCTID:362596009 xref: UMLS:C0229881 xref: Wikipedia:Tonsillar_fossa is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002372 ! tonsil [Term] id: UBERON:0035231 name: superficial middle cerebral vein def: "A vein that runs along the fissure of Sylvius to the cavernous sinus on the lateral surface of the brain and connects to the superior sagittal and transverse sinuses." [ncithesaurus:Superficial_Middle_Cerebral_Vein] subset: human_reference_atlas synonym: "Sylvian vein" EXACT [FMA:50983] synonym: "vein of Labbe" EXACT [FMA:50983] xref: FMA:50983 xref: NCIT:C33664 xref: SCTID:308729005 xref: UMLS:C0039027 xref: Wikipedia:Superficial_middle_cerebral_vein is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035234 name: medial circumflex femoral vein def: "A circumflex femoral vein that accompanies the medial circumflex femoral artery." [ncithesaurus:Medial_Femoral_Vein] subset: human_reference_atlas xref: FMA:44325 xref: NCIT:C52688 xref: SCTID:35235007 xref: UMLS:C1708952 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035237 name: branch of internal carotid artery synonym: "internal carotid arterial subdivision" EXACT [FMA:70506] synonym: "subdivision of internal carotid artery" EXACT [FMA:70506] xref: FMA:70506 xref: NCIT:C32837 xref: SCTID:360629008 xref: UMLS:C1182571 is_a: UBERON:0005396 ! carotid artery segment [Term] id: UBERON:0035240 name: posterior wall of oropharynx xref: FMA:55032 xref: NCIT:C12240 xref: SCTID:276960004 xref: UMLS:C0227155 is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0035243 name: anal sinus def: "Furrows, with pouchlike recesses at the lower end, separating the rectal columns." [ncithesaurus:Anal_Sinus] synonym: "anal crypt" EXACT [FMA:15717] xref: FMA:15717 xref: NCIT:C32070 xref: SCTID:245447000 xref: UMLS:C0227427 xref: Wikipedia:Anal_sinuses is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0035246 name: posterior longitudinal ligament xref: FMA:31894 xref: NCIT:C33365 xref: SCTID:244603005 xref: UMLS:C0206330 is_a: UBERON:0011136 {source="FMA"} ! ligament of vertebral column [Term] id: UBERON:0035249 name: posterior external jugular vein def: "A vein that drains the superficial muscles and integument of the upper back portion of the neck into the external jugular vein." [ncithesaurus:Posterior_External_Jugular_Vein] subset: human_reference_atlas xref: FMA:14318 xref: NCIT:C33360 xref: SCTID:59579009 xref: UMLS:C0226546 xref: Wikipedia:Posterior_external_jugular_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035252 name: left subcostal vein def: "A vein that extends along the bottom of the twelfth rib on the left side of the body." [ncithesaurus:Left_Subcostal_Vein] subset: human_reference_atlas synonym: "vena subcostalis sinistra" EXACT [FMA:4951] xref: FMA:4951 xref: NCIT:C53125 xref: SCTID:361639006 xref: UMLS:C0501289 is_a: UBERON:0001099 ! subcostal vein is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035258 name: mons pubis def: "A structure composed of adipose tissue lying above the pubic bone of adult women, anterior to the symphysis pubis. The mons pubis forms the anterior portion of the vulva, and limits the perineal region proximally and anteriorly." [Wikipedia:Mons_pubis] synonym: "mons" BROAD [Wikipedia:Mons_pubis] synonym: "mons veneris" EXACT OMO:0003011 [Wikipedia:Mons_pubis] synonym: "public mound" EXACT [Wikipedia:Mons_pubis] xref: FMA:20218 xref: NCIT:C33139 xref: SCTID:362695004 xref: UMLS:C0230190 xref: Wikipedia:Mons_pubis is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000997 {source="FMA"} ! mammalian vulva property_value: development_notes "The size of the mons pubis varies with the general level of hormone and body fat. After puberty it is covered with pubic hair and enlarges." xsd:string property_value: taxon_notes "In humans, the mons pubis divides into the labia majora on either side of the furrow, known as the cleft of venus, that surrounds the labia minora, clitoris, vaginal opening, and other structures of the vulval vestibule. The fatty tissue of the mons veneris is sensitive to estrogen, causing a distinct mound to form with the onset of puberty. This pushes the forward portion of the labia majora out and away from the pubic bone" xsd:string [Term] id: UBERON:0035261 name: posterior temporal artery subset: human_reference_atlas xref: FMA:50458 xref: NCIT:C33384 xref: SCTID:23830002 xref: UMLS:C0226229 is_a: UBERON:0001632 {source="FMA"} ! temporal artery is_a: UBERON:0035350 ! branch of middle cerebral artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035267 name: neck of gallbladder def: "The narrowest portion of the gallbladder and distal to the cystic duct." [ncithesaurus:Gallbladder_Neck] synonym: "cervix of gallbladder" EXACT [FMA:14538] synonym: "gallbladder neck" EXACT [FMA:14538] xref: FMA:14538 xref: NCIT:C32649 xref: SCTID:245394007 xref: UMLS:C0227546 xref: Wikipedia:Neck_of_gallbladder is_a: UBERON:0001560 ! neck of organ relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0035270 name: roof of nasopharynx synonym: "nasopharynx roof" EXACT [FMA:54906] synonym: "pharyngeal fornix" EXACT [FMA:54906] synonym: "roof of nasal part of pharynx" EXACT [FMA:54906] synonym: "superior nasopharynx" EXACT [FMA:54906] synonym: "superior wall of nasopharynx" EXACT [FMA:54906] synonym: "vault of pharynx" EXACT [FMA:54906] xref: FMA:54906 xref: NCIT:C12242 xref: SCTID:179268001 xref: UMLS:C0225492 is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0035273 name: superior thoracic artery def: "The superior thoracic artery (highest thoracic artery) is a small vessel normally arising from the first division of the axillary artery, but may arise from the thoracoacromial artery, itself a branch of the second division of the axillary artery. Running forward and medialward along the upper border of the pectoralis minor, the superior thoracic artery passes between it and the pectoralis major to the side of the chest. It supplies branches to the first and second intercostal spaces as well as to the superior portion of serratus anterior. It anastomoses with the internal mammary and intercostal arteries." [Wikipedia:Superior_thoracic_artery] subset: human_reference_atlas xref: FMA:22668 xref: NCIT:C33701 xref: SCTID:198713000 xref: UMLS:C0226419 xref: Wikipedia:Superior_thoracic_artery is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035276 name: epigastrium def: "The upper central region of the abdomen between the costal margins and the subcostal plane." [ncithesaurus:Epigastric_Region] synonym: "epigastric fossa" EXACT [FMA:20389] synonym: "epigastric part of abdomen" EXACT [FMA:20389] synonym: "epigastric region" EXACT [FMA:20389] xref: FMA:20389 xref: NCIT:C32525 xref: SCTID:362693006 xref: UMLS:C0230185 xref: Wikipedia:Epigastrium is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0035279 name: supraclavicular lymph node def: "A lymph node which is located above the clavicle." [ncithesaurus:Supraclavicular_Lymph_Node] subset: human_reference_atlas synonym: "nodus lymphaticus supraclavicularis axillae" EXACT OMO:0003011 [FMA:14192, FMA:TA] synonym: "supraclavicular node" EXACT [FMA:14192] xref: FMA:14192 xref: NCIT:C12903 xref: SCTID:245325004 xref: UMLS:C0229730 xref: Wikipedia:Supraclavicular_lymph_nodes is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035286 name: lateral wall of oropharynx xref: FMA:55008 xref: NCIT:C12239 xref: SCTID:362125007 xref: UMLS:C0227156 is_a: UBERON:0000328 ! gut wall is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0035289 name: axillary tail of breast def: "An extension of the tissue of the breast which extends into the axilla." [Wikipedia:Tail_of_Spence] synonym: "axillary process" EXACT [FMA:58072] synonym: "axillary tail" EXACT [FMA:58072] synonym: "axillary tail of Spence" EXACT [FMA:58072] synonym: "processus axillaris (glandula mammaria)" EXACT [FMA:58072] synonym: "tail of Spence" EXACT [FMA:58072] xref: FMA:58072 xref: NCIT:C12305 xref: SCTID:181137001 xref: UMLS:C0222611 xref: Wikipedia:Tail_of_Spence is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000310 {source="ncithesaurus"} ! breast [Term] id: UBERON:0035292 name: branch of posterior tibial artery synonym: "posterior tibial arterial branch" EXACT [FMA:69784] xref: FMA:69784 xref: NCIT:C33385 xref: SCTID:314363005 xref: UMLS:C1181956 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035295 name: left ear def: "The organ of hearing located on the left side of the head[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Left_Ear] xref: FMA:53642 xref: NCIT:C81259 xref: SCTID:368592000 xref: UMLS:C0229299 is_a: UBERON:0001690 ! ear is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035298 name: tuberculum sellae def: "An elevated zone of the sella turcica behind the chiasmatic groove[WP,modified]." [Wikipedia:Tuberculum_sellae] xref: FMA:54719 xref: NCIT:C45911 xref: SCTID:139784008 xref: UMLS:C0230049 xref: Wikipedia:Tuberculum_sellae is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0003689 {source="FMA"} ! sella turcica [Term] id: UBERON:0035304 name: branch of ulnar artery synonym: "ulnar arterial branch" EXACT [FMA:22799] xref: FMA:22799 xref: NCIT:C33826 xref: SCTID:360551008 xref: UMLS:C0816071 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035307 name: branch of vertebral artery synonym: "vertebral arterial branch" EXACT [FMA:76259] xref: FMA:76259 xref: NCIT:C33867 xref: SCTID:360535000 xref: UMLS:C1185372 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035310 name: inferolateral surface of prostate def: "The aspect of the prostate facing the pelvic diaphragm and pubis." [ncithesaurus:Inferolateral_Surface_of_the_Prostate] synonym: "facies inferolaterales (prostatae)" EXACT [FMA:19596] synonym: "facies inferolateralis prostatae" EXACT OMO:0003011 [FMA:19596, FMA:TA] synonym: "inferolateral surface of prostate gland" EXACT [FMA:19596] xref: FMA:19596 xref: NCIT:C13090 xref: SCTID:279698000 xref: UMLS:C0227962 is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0035313 name: posterior wall of laryngopharynx synonym: "posterior wall of hypopharynx" EXACT [FMA:55063] xref: FMA:55063 xref: NCIT:C12249 xref: SCTID:276966005 xref: UMLS:C0227174 is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0035316 name: prostatic capsule def: "The membrane the surrounds the prostate gland." [ncithesaurus:Capsule_of_the_Prostate] synonym: "capsule of prostate" EXACT [FMA:19583] synonym: "capsule of prostate gland" EXACT [FMA:19583] xref: FMA:19583 xref: NCIT:C13086 xref: SCTID:279682007 xref: UMLS:C0227963 is_a: UBERON:0003893 ! capsule is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0035319 name: anterior median fissure of spinal cord def: "A fissure in the midline of the anterior surface of the spinal cord." [ncithesaurus:Anterior_Median_Fissure_of_Spinal_Cord] synonym: "fissura mediana anterior medullae spinalis" EXACT OMO:0003011 [FMA:83735, FMA:TA] synonym: "ventral median fissure of spinal cord" EXACT [FMA:83735] xref: FMA:83735 xref: NCIT:C32096 xref: SCTID:314225000 xref: UMLS:C1744548 xref: Wikipedia:Anterior_median_fissure_of_spinal_cord is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure [Term] id: UBERON:0035322 name: right common iliac artery subset: human_reference_atlas synonym: "trunk of right common iliac arterial tree" EXACT [FMA:14765] xref: FMA:14765 xref: NCIT:C33474 xref: SCTID:283392005 xref: UMLS:C0226362 is_a: UBERON:0001191 ! common iliac artery is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035328 name: upper outer quadrant of breast def: "The quarter of the breast which is superior and lateral." [ncithesaurus:Upper-outer_Quadrant_of_the_Breast] synonym: "upper outer quadrant of female breast" EXACT [FMA:61380] xref: FMA:61380 xref: NCIT:C12303 xref: SCTID:181134008 xref: UMLS:C0222598 is_a: UBERON:0035635 ! upper quadrant of breast is_a: UBERON:0035638 ! outer quadrant of breast [Term] id: UBERON:0035331 name: base of prostate def: "The uppermost part of the prostate gland adjacent to the bladder wall." [ncithesaurus:Base_of_the_Prostate] synonym: "base of prostate gland" EXACT [FMA:19595] synonym: "prostatic base" EXACT [FMA:19595] xref: FMA:19595 xref: NCIT:C13088 xref: SCTID:279702001 xref: UMLS:C0227958 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:0035338 name: sphenoparietal sinus def: "The cavernous sinus receives the superior ophthalmic vein through the superior orbital fissure, some of the cerebral veins, and also the small sphenoparietal sinus, which courses along the under surface of the small wing of the sphenoid." [Wikipedia:Sphenoparietal_sinus] xref: FMA:50776 xref: NCIT:C33585 xref: SCTID:279266001 xref: UMLS:C0226866 xref: Wikipedia:Sphenoparietal_sinus is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus [Term] id: UBERON:0035341 name: posterior lobe of prostate def: "The prostate gland lobe that is located on the posterior side of the organ." [ncithesaurus:Posterior_Lobe_of_the_Prostate] synonym: "posterior lobe of prostate gland" EXACT [FMA:19575] synonym: "posterior peripheral zone" EXACT [FMA:19575] xref: FMA:19575 xref: NCIT:C13093 xref: SCTID:66012001 xref: UMLS:C0227976 is_a: UBERON:0001328 {source="FMA"} ! lobe of prostate [Term] id: UBERON:0035344 name: obsolete synapse is_obsolete: true replaced_by: GO:0045202 consider: FMA:67408 consider: NCIT:C13281 consider: SCTID:362298009 consider: UMLS:C0039062 [Term] id: UBERON:0035350 name: branch of middle cerebral artery synonym: "middle cerebral arterial branch" EXACT [FMA:50081] xref: FMA:50081 xref: NCIT:C33114 xref: SCTID:314302003 xref: UMLS:C0923405 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035359 name: branch of brachial artery synonym: "brachial arterial branch" EXACT [FMA:22693] xref: FMA:22693 xref: NCIT:C32227 xref: SCTID:360543005 xref: UMLS:C0815997 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035365 name: lower outer quadrant of breast def: "The quarter of the breast which is inferior and lateral." [ncithesaurus:Lower-outer_Quadrant_of_the_Breast] synonym: "lower outer quadrant of female breast" EXACT [FMA:61376] xref: FMA:61376 xref: NCIT:C12304 xref: SCTID:181136005 xref: UMLS:C0222599 is_a: UBERON:0035636 ! lower quadrant of breast is_a: UBERON:0035638 ! outer quadrant of breast [Term] id: UBERON:0035368 name: anterior surface of kidney def: "The aspect of the kidney facing the abdominal cavity." [ncithesaurus:Anterior_Surface_of_the_Kidney] synonym: "facies anterior (Ren)" EXACT [FMA:15589] synonym: "facies anterior renis" EXACT OMO:0003011 [FMA:15589, FMA:TA] xref: FMA:15589 xref: NCIT:C32107 xref: SCTID:279375001 xref: UMLS:C0227609 is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0002113 {source="ncithesaurus"} ! kidney [Term] id: UBERON:0035371 name: retroperitoneal lymph node def: "A lymph node located in the retroperitoneal space." [ncithesaurus:Retroperitoneal_Lymph_Node] synonym: "retroperitoneal node" EXACT [FMA:16694] xref: FMA:16694 xref: NCIT:C98189 xref: SCTID:249613000 xref: UMLS:C0229802 is_a: UBERON:0000029 ! lymph node is_a: UBERON:0002075 ! viscus [Term] id: UBERON:0035374 name: small cardiac vein def: "A vein running parallel to the right coronary artery in the coronary sulcus that drains into the right extremity of the coronary sinus." [ncithesaurus:Small_Cardiac_Vein] subset: human_reference_atlas synonym: "right cardiac vein" EXACT [FMA:4714] xref: FMA:4714 xref: NCIT:C12881 xref: SCTID:277730007 xref: UMLS:C0226661 xref: Wikipedia:Small_cardiac_vein is_a: UBERON:0004148 {source="FMA", source="ncithesaurus"} ! cardiac vein relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035377 name: transverse fold of rectum def: "One of the semi-lunar transverse folds of the rectal wall that protrude into the anal canal." [Wikipedia:Houston_valve] synonym: "horizontal fold of rectum" EXACT [FMA:15722] synonym: "transverse rectal fold" EXACT [FMA:15722] xref: FMA:15722 xref: NCIT:C33807 xref: SCTID:259687002 xref: UMLS:C0227403 xref: Wikipedia:Houston_valve is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001052 {source="ncithesaurus"} ! rectum property_value: function_notes "Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate" xsd:string [Term] id: UBERON:0035380 name: branch of anterior cerebral artery def: "An arterial branch arising from the anterior cerebral artery. It includes the callosomarginal artery, frontopolar artery, medial orbitofrontal artery, pericallosal artery, and recurrent artery of Heubner." [ncithesaurus:Anterior_Cerebral_Artery_Branch] synonym: "anterior cerebral arterial branch" EXACT [FMA:50031] xref: FMA:50031 xref: NCIT:C32082 xref: SCTID:314304002 xref: UMLS:C0923371 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035383 name: lateral wall of nasopharynx synonym: "lateral nasopharynx" EXACT [FMA:54908] xref: FMA:54908 xref: NCIT:C12244 xref: SCTID:361937006 xref: UMLS:C0225486 is_a: UBERON:0000328 ! gut wall is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0035386 name: space of Mall synonym: "mall space" EXACT [FMA:70118] xref: FMA:70118 xref: NCIT:C33580 xref: SCTID:89510009 xref: UMLS:C0227532 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system [Term] id: UBERON:0035392 name: cystic vein def: "A blood vessel carrying deoxygenated blood from the gallbladder and the cystic duct into the right branch of the portal vein." [ncithesaurus:Cystic_Vein] subset: human_reference_atlas synonym: "cholecystic vein" EXACT [FMA:15403] xref: FMA:15403 xref: NCIT:C32422 xref: SCTID:281059001 xref: UMLS:C0226741 xref: Wikipedia:Cystic_vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0005806 {source="ncithesaurus"} ! portal system relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035395 name: branch of left coronary artery synonym: "left coronary arterial branch" EXACT [FMA:66328] xref: FMA:66328 xref: NCIT:C32958 xref: SCTID:244248004 xref: UMLS:C0447055 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035398 name: branch of external carotid artery synonym: "external carotid arterial subdivision" EXACT [FMA:70505] synonym: "subdivision of external carotid artery" EXACT [FMA:70505] xref: FMA:70505 xref: NCIT:C32552 xref: SCTID:244216003 xref: UMLS:C0447038 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035401 name: posterior wall of nasopharynx synonym: "posterior nasopharynx" EXACT [FMA:54907] xref: FMA:54907 xref: NCIT:C12243 xref: SCTID:361936002 xref: UMLS:C0225484 is_a: UBERON:0000328 ! gut wall relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0035403 name: hypophysial artery def: "An artery that supplies the pituitary gland." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035404 name: superior hypophysial artery def: "The superior hypophysial artery is an artery supplying the pars tuberalis,the infundibulum of the pituitary gland and the median eminence. It is a branch of the posterior communicating artery which branches from the internal carotid artery in the circle of Willis.." [Wikipedia:Superior_hypophysial_artery] subset: human_reference_atlas synonym: "superior hypophyseal artery" EXACT [FMA:49849] xref: FMA:49849 xref: NCIT:C33678 xref: SCTID:303427008 xref: UMLS:C1261387 xref: Wikipedia:Superior_hypophysial_artery is_a: UBERON:0035403 ! hypophysial artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035410 name: left inguinal part of abdomen synonym: "left iliac fossa viewed surgically" EXACT [FMA:24037] synonym: "left iliac region" EXACT [FMA:24037] synonym: "left inguinal region" EXACT [FMA:24037] xref: FMA:24037 xref: NCIT:C32963 xref: SCTID:362725002 xref: UMLS:C0230321 is_a: UBERON:0008337 ! inguinal part of abdomen is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035416 name: diaphragma sellae def: "The diaphragma sellae or sellar diaphragm is the circular fold of dura mater that almost completely roofs the fossa hypophyseos in the sphenoid bone of the skull. It retains the pituitary gland in the fossa hypophyseos, with only the infundibulum of the pituitary gland passing through it." [Wikipedia:Diaphragma_sellae] synonym: "sellar diaphragm" EXACT [FMA:78540] xref: FMA:78540 xref: NCIT:C32459 xref: SCTID:32967008 xref: UMLS:C0228123 xref: Wikipedia:Diaphragma_sellae is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater [Term] id: UBERON:0035419 name: anterior longitudinal ligament def: "A ligament running the length of the anterior surface of the spinal column and thereby interconnects all the vertebral bodies." [ncithesaurus:Anterior_Longitudinal_Ligament] xref: FMA:31893 xref: NCIT:C32095 xref: SCTID:244601007 xref: UMLS:C0206329 is_a: UBERON:0011136 {source="FMA"} ! ligament of vertebral column [Term] id: UBERON:0035422 name: circumflex branch of left coronary artery def: "Branch of left coronary artery which runs perpendicular to the anterior interventricular branch of the left coronary artery on the left side of the interventricular sulcus and supplies the left side of the heart." [FMA:3895] subset: human_reference_atlas synonym: "circumflex coronary artery" EXACT [FMA:3895] synonym: "left circumflex branch of left coronary artery" EXACT [FMA:3895] synonym: "ramus circumflexus (arteria coronaria sinistra)" EXACT OMO:0003011 [FMA:3895, FMA:TA] xref: FMA:3895 xref: NCIT:C12874 xref: SCTID:362036002 xref: UMLS:C0226037 xref: Wikipedia:Circumflex_branch_of_left_coronary_artery is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0035395 ! branch of left coronary artery relationship: part_of UBERON:0001626 {source="FMA"} ! left coronary artery relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035425 name: falx cerebelli def: "A small triangular process of dura matter beginning at the internal occipital crest just beneath the tentorium and projecting forward." [ncithesaurus:Falx_Cerebelli] synonym: "cerebellar falx" EXACT [FMA:83974] xref: FMA:83974 xref: NCIT:C32584 xref: SCTID:280380009 xref: UMLS:C0228122 xref: Wikipedia:Falx_cerebelli is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater [Term] id: UBERON:0035428 name: postcapillary venule xref: FMA:63191 xref: NCIT:C33345 xref: SCTID:6216007 xref: UMLS:C0226505 is_a: UBERON:0001979 {source="FMA"} ! venule [Term] id: UBERON:0035431 name: mediastinal pleura def: "The parietal pleura that lines the mediastinum." [ncithesaurus:Mediastinal_Pleura] synonym: "mediastinal part of parietal pleura" EXACT [FMA:9736] synonym: "pars mediastinalis (pleurae)" EXACT [FMA:9736] synonym: "pars mediastinalis pleurae parietalis" EXACT OMO:0003011 [FMA:9736, FMA:TA] xref: FMA:9736 xref: NCIT:C94820 xref: SCTID:362002008 xref: UMLS:C0225789 xref: Wikipedia:Mediastinal_pleura is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002400 {source="FMA"} ! parietal pleura [Term] id: UBERON:0035435 name: right suprarenal vein def: "A vein that drains blood from the right adrenal gland into the inferior vena cava." [ncithesaurus:Right_Suprarenal_Vein] subset: human_reference_atlas synonym: "vena suprarenalis (adrenalis) dextra" EXACT [FMA:14343] xref: FMA:14343 xref: NCIT:C53131 xref: SCTID:69354005 xref: UMLS:C0226721 is_a: UBERON:0001146 ! suprarenal vein is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035438 name: mucoid tissue def: "Loose connective tissue, the intercellular matrix of which consists predominantly of mucoid ground substance. Examples: Mucoid tissue of umbilical cord, mucoid tissue of vitreous body, mucoid tissue of nucleus pulposus." [FMA:20111] synonym: "mucous connective tissue" EXACT [FMA:20111] synonym: "mucous tissue" EXACT [FMA:20111] xref: FMA:20111 xref: NCIT:C34213 xref: SCTID:61115003 xref: UMLS:C0230987 is_a: UBERON:0011825 {source="FMA"} ! loose connective tissue property_value: external_ontology_notes "ncit restricts to umbilical cord" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0035441 name: apex of prostate def: "The lowest part of the prostate gland adjacent to the superior fascia of the urogenital diaphragm." [ncithesaurus:Apex_of_the_Prostate] synonym: "apex of prostate gland" EXACT [FMA:19594] synonym: "prostatic apex" EXACT [FMA:19594] xref: FMA:19594 xref: NCIT:C13087 xref: SCTID:279703006 xref: UMLS:C0227959 is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0002367 {source="ncithesaurus"} ! prostate gland property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:0035444 name: triangular ligament of liver synonym: "triangular ligament" BROAD [FMA:15821] xref: FMA:15821 xref: SCTID:279968005 is_a: UBERON:0000211 ! ligament is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0002107 ! liver property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0035445 name: urogenital diaphragm def: "Muscular components of the deep perineal pouch." [Wikipedia:Urogenital_diaphragm] xref: FMA:19734 xref: NCIT:C33810 xref: UMLS:C0230241 xref: Wikipedia:Urogenital_diaphragm is_a: UBERON:0000211 {source="ncithesaurus"} ! ligament is_a: UBERON:0005173 ! abdominal segment element relationship: part_of UBERON:0002356 {source="ncithesaurus"} ! perineum property_value: editor_note "consider obsoletion" xsd:string [Term] id: UBERON:0035450 name: cervical part of esophagus def: "Clinical esophageal segment composed of skeletal muscle. It corresponds to the superior part of the upper third topographic segment of the esophagus." [ncithesaurus:Cervical_Esophagus] synonym: "cervical esophagus" EXACT [FMA:9395] synonym: "cervical part of oesophagus" EXACT [FMA:9395] synonym: "pars cervicalis (oesophagus)" EXACT [FMA:9395] synonym: "pars cervicalis oesophageae" EXACT OMO:0003011 [FMA:9395, FMA:TA] synonym: "pars colli oesophageae" EXACT OMO:0003011 [FMA:9395, FMA:TA] xref: FMA:9395 xref: NCIT:C12250 xref: SCTID:245405004 xref: UMLS:C0227186 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus [Term] id: UBERON:0035453 name: laryngeal ventricle synonym: "ventricle of larynx" EXACT [FMA:64171] synonym: "ventricle of Morgagni" EXACT [FMA:64171] xref: FMA:64171 xref: NCIT:C32935 xref: SCTID:361949007 xref: UMLS:C0225566 is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001737 {source="ncithesaurus"} ! larynx [Term] id: UBERON:0035462 name: anterior parietal artery def: "The artery that delivers blood to the anterior portion of the parietal lobe." [ncithesaurus:Anterior_Parietal_Artery] subset: human_reference_atlas xref: FMA:50485 xref: NCIT:C32101 xref: SCTID:78499006 xref: UMLS:C0226226 is_a: UBERON:0035350 ! branch of middle cerebral artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035465 name: endometrial cavity def: "A space inside the uterus lined by a layer of mucus membranes called the endometrium." [ncithesaurus:Endometrial_Cavity] synonym: "cavity of body of uterus" EXACT [FMA:18076] synonym: "endometrial cavity" EXACT [FMA:18076] synonym: "endometrial lumen" EXACT [] synonym: "intrauterine cavity" EXACT [FMA:18076] xref: FMA:18076 xref: NCIT:C32514 xref: SCTID:362257002 xref: UMLS:C0227844 xref: Wikipedia:Uterine_cavity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0013769 ! uterine lumen [Term] id: UBERON:0035468 name: costodiaphragmatic recess def: "The angled junction where the diaphragm meets the chest wall." [ncithesaurus:Costophrenic_Angle] synonym: "costophrenic angle" EXACT [FMA:11355] xref: FMA:11355 xref: NCIT:C32393 xref: SCTID:46297007 xref: UMLS:C0230151 xref: Wikipedia:Costodiaphragmatic_recess is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001103 {source="ncithesaurus"} ! diaphragm [Term] id: UBERON:0035471 name: posterior surface of kidney synonym: "facies posterior (Ren)" EXACT [FMA:15590] synonym: "facies posterior renis" EXACT OMO:0003011 [FMA:15590, FMA:TA] xref: FMA:15590 xref: NCIT:C32895 xref: SCTID:279376000 xref: UMLS:C0227610 is_a: UBERON:0036215 ! anatomical surface region [Term] id: UBERON:0035474 name: right subcostal vein def: "A vein that extends along the bottom of the twelfth rib on the right side of the body." [ncithesaurus:Right_Subcostal_Vein] subset: human_reference_atlas synonym: "vena subcostalis dextra" EXACT [FMA:4844] xref: FMA:4844 xref: NCIT:C53123 xref: SCTID:361638003 xref: UMLS:C0501189 is_a: UBERON:0001099 ! subcostal vein is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035477 name: lower inner quadrant of breast def: "The quarter of the breast which is inferior and medial." [ncithesaurus:Lower-inner_Quadrant_of_the_Breast] synonym: "lower inner quadrant of female breast" EXACT [FMA:61377] xref: FMA:61377 xref: NCIT:C12302 xref: SCTID:181135009 xref: UMLS:C0222597 is_a: UBERON:0035636 ! lower quadrant of breast is_a: UBERON:0035637 ! inner quadrant of breast [Term] id: UBERON:0035480 name: surface of prostate def: "The external portion of the prostate including the anterior, inferolateral, lateral and posterior surfaces." [ncithesaurus:Surface_of_the_Prostate] synonym: "prostatic surface" EXACT [FMA:19590] synonym: "surface of prostate gland" EXACT [FMA:19590] xref: FMA:19590 xref: NCIT:C13091 xref: SCTID:279694003 xref: UMLS:C0426735 is_a: UBERON:0036215 ! anatomical surface region [Term] id: UBERON:0035483 name: left suprarenal vein def: "A vein that drains blood from the left adrenal gland into the left renal artery." [ncithesaurus:Left_Suprarenal_Vein] subset: human_reference_atlas xref: FMA:14349 xref: NCIT:C53138 xref: SCTID:85087001 xref: UMLS:C0226709 xref: Wikipedia:Suprarenal_veins is_a: UBERON:0001146 ! suprarenal vein is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035489 name: branch of basilar artery synonym: "basilar arterial branch" EXACT [FMA:76269] xref: FMA:76269 xref: NCIT:C32195 xref: SCTID:360537008 xref: UMLS:C1185381 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035492 name: inferior hypophysial artery def: "The inferior hypophysial artery is an artery supplying the pituitary gland. It is a branch of the cavernous carotid artery (internal carotid artery)." [Wikipedia:Inferior_hypophysial_artery] subset: human_reference_atlas synonym: "inferior hypophyseal artery" EXACT [FMA:49846] xref: FMA:49846 xref: NCIT:C32777 xref: SCTID:303428003 xref: UMLS:C1261083 xref: Wikipedia:Inferior_hypophysial_artery is_a: UBERON:0035403 ! hypophysial artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035495 name: hilum of lymph node def: "The concave side of the lymph node." [ncithesaurus:Lymph_Node_Hilum] subset: human_reference_atlas synonym: "hilum nodi lymphoidei" EXACT OMO:0003011 [FMA:62842, FMA:TA] synonym: "lymph node hilum" EXACT [FMA:62842] xref: FMA:62842 xref: NCIT:C33031 xref: SCTID:327052008 xref: UMLS:C0229703 is_a: UBERON:0004885 ! hilum relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035498 name: gastrophrenic ligament def: "The portion of the greater omentum that extends from the greater curvature of the stomach to the inferior surface of the diaphragm." [http://medical-dictionary.thefreedictionary.com/gastrophrenic+ligament] xref: FMA:16518 xref: NCIT:C32670 xref: SCTID:260725009 xref: UMLS:C0230231 is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament relationship: part_of UBERON:0005448 ! greater omentum [Term] id: UBERON:0035501 name: unencapsulated tactile receptor def: "Free nerve endings are widely distributed throughout the body, and are found as branches of unmyelinated, or lightly myelinated fibres grouped in bundles beneath the epithelium. As they penetrate the epithelium, they lose their myelin, and branch among the epithelial cells. Branches of one nerve may cover a wide area and overlap the territories of other nerves. The free nerve endings detect pain, touch, pressure and temperature, and are associated with C fibres." [ncithesaurus:Free_Nerve_Ending] synonym: "free nerve ending" EXACT [FMA:84005] synonym: "unencapsulated nerve ending" EXACT [FMA:84005] xref: FMA:84005 xref: NCIT:C13174 xref: SCTID:38005009 xref: UMLS:C0228107 is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor relationship: part_of UBERON:0002067 {source="ncithesaurus"} ! dermis [Term] id: UBERON:0035505 name: right inguinal part of abdomen synonym: "right iliac fossa viewed surgically" EXACT [FMA:24036] synonym: "right iliac region" EXACT [FMA:24036] synonym: "right inguinal region" EXACT [FMA:24036] xref: FMA:24036 xref: NCIT:C33479 xref: SCTID:362724003 xref: UMLS:C0230318 is_a: UBERON:0008337 ! inguinal part of abdomen is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035508 name: branch of posterior cerebral artery synonym: "posterior cerebral arterial branch" EXACT [FMA:50586] xref: FMA:50586 xref: NCIT:C33351 xref: SCTID:314305001 xref: UMLS:C0923792 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0035514 name: special sense organ system xref: FMA:7189 xref: NCIT:C13058 xref: SCTID:276152001 xref: UMLS:C0228069 is_a: UBERON:0011216 ! organ system subdivision [Term] id: UBERON:0035520 name: anterior mediastinal lymph node def: "A lymph node located in the superior mediastinum that collects lymph from the thymus, the pericardium, and the right side of the heart." [ncithesaurus:Anterior_Mediastinal_Lymph_Node] synonym: "anterior mediastinal node" EXACT [FMA:12775] xref: FMA:12775 xref: NCIT:C32097 xref: SCTID:245335005 xref: UMLS:C0229758 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0035523 name: anterior surface of prostate def: "The aspect of the prostate facing the pubic symphysis." [ncithesaurus:Anterior_Surface_of_the_Prostate] synonym: "anterior surface of prostate gland" EXACT [FMA:19591] synonym: "facies anterior (prostatae)" EXACT [FMA:19591] synonym: "facies anterior prostatae" EXACT OMO:0003011 [FMA:19591, FMA:TA] xref: FMA:19591 xref: NCIT:C13089 xref: SCTID:279696001 xref: UMLS:C0227960 is_a: UBERON:0035480 ! surface of prostate [Term] id: UBERON:0035526 name: superficial fibular nerve def: "A branch of the common fibular nerve that innervates the fibularis longus and brevis muscles, and via branches innervates parts of the dorsal part of the pes." [http://medical-dictionary.thefreedictionary.com/superficial%20fibular%20nerve, ncithesaurus:Superficial_Peroneal_Nerve, UBERON:cjm] synonym: "superficial peroneal nerve" EXACT [FMA:44699] xref: FMA:44699 xref: NCIT:C92603 xref: SCTID:181080008 xref: UMLS:C0228952 xref: Wikipedia:Superficial_fibular_nerve is_a: UBERON:0003431 ! leg nerve is_a: UBERON:0035652 ! fibular nerve [Term] id: UBERON:0035529 name: left common iliac artery subset: human_reference_atlas synonym: "trunk of left common iliac arterial tree" EXACT [FMA:14766] xref: FMA:14766 xref: NCIT:C32957 xref: SCTID:283493001 xref: UMLS:C0226363 is_a: UBERON:0001191 ! common iliac artery is_a: UBERON:0015212 ! lateral structure relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035530 name: basal vein def: "The basal vein is formed at the anterior perforated substance by the union of (a) a small anterior cerebral vein which accompanies the anterior cerebral artery and supplies the medial surface of the frontal lobe by the fronto-basal vein. (b) the deep middle cerebral vein (deep Sylvian vein), which receives tributaries from the insula and neighboring gyri, and runs in the lower part of the lateral cerebral fissure, and (c) the inferior striate veins, which leave the corpus striatum through the anterior perforated substance. The basal vein passes backward around the cerebral peduncle, and ends in the internal cerebral vein; it receives tributaries from the interpeduncular fossa, the inferior horn of the lateral ventricle, the hippocampal gyrus, and the mid-brain." [Wikipedia:Basal_vein] subset: human_reference_atlas synonym: "basal vein of rosenthal" EXACT [FMA:50990] synonym: "basal veins" RELATED [Wikipedia:Basal_vein] synonym: "inferior striate vein" RELATED [Wikipedia:Basal_vein] synonym: "inferior striate veins" RELATED [Wikipedia:Basal_vein] synonym: "rosenthal's vein" EXACT [FMA:50990] xref: FMA:50990 xref: SCTID:244398001 xref: Wikipedia:Basal_vein is_a: UBERON:0016564 {source="FMA"} ! deep cerebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035532 name: deep middle cerebral vein def: "The blood vessel that receives deoxygenated blood from the insula and gyri and drains into the basal vein of Rosenthal deep in the lateral sulcus." [ncithesaurus:Deep_Middle_Cerebral_Vein] subset: human_reference_atlas xref: FMA:51309 xref: NCIT:C32440 xref: SCTID:279272001 xref: UMLS:C0226586 xref: Wikipedia:Deep_middle_cerebral_vein is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035536 name: body of gallbladder def: "The middle portion of the gallbladder which is distal to the gallbladder neck and proximal to the gallbladder fundus." [ncithesaurus:Gallbladder_Body] synonym: "gallbladder body" EXACT [FMA:14537] xref: FMA:14537 xref: NCIT:C32647 xref: SCTID:245392006 xref: UMLS:C0227545 xref: Wikipedia:Body_of_gallbladder is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002110 {source="FMA"} ! gallbladder [Term] id: UBERON:0035539 name: esophageal artery def: "Any of several arteries that arise from the aorta and supply blood to the esophagus." [ncithesaurus:Esophageal_Artery] subset: human_reference_atlas synonym: "aortic esophageal artery" EXACT [FMA:4149] synonym: "oesophageal artery" EXACT [FMA:4149] xref: FMA:4149 xref: NCIT:C32535 xref: SCTID:56548006 xref: UMLS:C0226294 is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0004573 {source="FMA"} ! systemic artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035542 name: upper inner quadrant of breast def: "The quarter of the breast which is superior and medial." [ncithesaurus:Upper-inner_Quadrant_of_the_Breast] synonym: "upper inner quadrant of female breast" EXACT [FMA:61375] xref: FMA:61375 xref: NCIT:C12301 xref: SCTID:181132007 xref: UMLS:C0222596 is_a: UBERON:0035635 ! upper quadrant of breast is_a: UBERON:0035637 ! inner quadrant of breast [Term] id: UBERON:0035545 name: deep lymphatic vessel def: "The tubules that carry lymph throughout the body that are in the interior of the body or limbs." [ncithesaurus:Deep_Lymphatic_Vessel] synonym: "deep lymph vessel" EXACT [FMA:52012] xref: FMA:52012 xref: NCIT:C32439 xref: SCTID:14033005 xref: UMLS:C1282746 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0035546 name: uveal vein synonym: "ciliary vein" EXACT [FMA:51797] xref: FMA:51797 xref: SCTID:149683007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0035547 name: posterior ciliary vein def: "The outer layer of the choroid (lamina vasculosa) consists, in part, of the larger branches of the short ciliary arteries which run forward between the veins, before they bend inward to end in the capillaries, but is formed principally of veins, named, from their arrangement, the vorticose veins. They converge to four or five equidistant trunks, which pierce the sclera about midway between the sclero-corneal junction and the entrance of the optic nerve. They drain uveal tract." [Wikipedia:Vorticose_veins] subset: human_reference_atlas synonym: "posterior veins" RELATED [Wikipedia:Vorticose_veins] synonym: "venae vorticasae" RELATED [Wikipedia:Vorticose_veins] synonym: "venae vorticosae" RELATED [Wikipedia:Vorticose_veins] synonym: "venea vorticosae" RELATED [Wikipedia:Vorticose_veins] synonym: "vortex vein" RELATED [Wikipedia:Vorticose_veins] synonym: "vortex veins" RELATED [Wikipedia:Vorticose_veins] synonym: "vorticosae" RELATED [Wikipedia:Vorticose_veins] synonym: "vorticose vein" EXACT [FMA:51796] synonym: "vorticose vein" RELATED [Wikipedia:Vorticose_veins] xref: FMA:51796 xref: SCTID:361319002 xref: SCTID:368813004 xref: Wikipedia:Vorticose_veins is_a: UBERON:0035546 {source="FMA"} ! uveal vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035548 name: colic artery xref: SCTID:77852007 is_a: UBERON:0001637 ! artery property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035549 name: vasculature of integument def: "The part of the circulatory system that lies within the subcutaneous tissue layers close to the surface of the skin." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "dermis vasculature" NARROW [] synonym: "hypodermis vasculature" NARROW [] synonym: "skin vasculature" RELATED [] synonym: "subcutaneous vasculature" RELATED [] synonym: "superficial part of circulatory system" EXACT [] synonym: "superficial vasculature" EXACT [] synonym: "vasculature of skin" RELATED [FMA:225275] xref: FMA:225275 is_a: UBERON:0002049 ! vasculature relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035550 name: superficial vein def: "Any of the veins carrying deoxygenated blood from the subcutaneous tissue layers." [ncithesaurus:Superficial_Vein] synonym: "superfical vein" RELATED [Wikipedia:Superficial_vein] synonym: "superficial veins" RELATED [Wikipedia:Superficial_vein] synonym: "superficial vessels" RELATED [Wikipedia:Superficial_vein] xref: FMA:76719 xref: NCIT:C33666 xref: SCTID:341382008 xref: UMLS:C0226513 xref: Wikipedia:Superficial_vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0035549 ! vasculature of integument [Term] id: UBERON:0035551 name: deep vasculature def: "The part of the circulatory system that lies deep beneath the subcutaneous tissue layers away from the surface of the skin." [http://orcid.org/0000-0002-6601-2165] synonym: "deep part of circulatory system" EXACT [] is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0035552 name: deep vein def: "A blood vessel carrying deoxygenated blood far beneath the skin usually accompanying an artery." [ncithesaurus:Deep_Vein] synonym: "deep veins" RELATED [Wikipedia:Deep_vein] synonym: "deep vessels" RELATED [Wikipedia:Deep_vein] xref: FMA:76718 xref: NCIT:C32444 xref: SCTID:341484008 xref: UMLS:C0226514 xref: Wikipedia:Deep_vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0035553 name: left cardiac chamber def: "Any chamber of the left side of the heart." [http://orcid.org/0000-0002-6601-2165] xref: FMA:7166 xref: SCTID:362008007 is_a: UBERON:0004151 ! cardiac chamber is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035554 name: right cardiac chamber def: "Any chamber of the right side of the heart." [http://orcid.org/0000-0002-6601-2165] xref: FMA:7165 xref: SCTID:362007002 is_a: UBERON:0004151 ! cardiac chamber is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0035555 name: lateral line sense organ is_a: UBERON:0010521 ! electroreceptor organ relationship: part_of UBERON:0002540 ! lateral line system property_value: editor_note "ensure pit organ classifies here" xsd:string [Term] id: UBERON:0035560 name: obsolete fascia dentata def: "OBSOLETE: The fascia dentata is the earliest stage of the hippocampal circuit. Its primary input is the perforant path from the superficial layers of entorhinal cortex. Its principal neurons are tiny granule cells which give rise to unmyelinated axons called the mossy fibers which project to the hilus and CA3. The fascia dentata of the rat contains approximately 1,000,000 granule cells. It receives feedback connections from mossy cells in the hilus at distant levels in the septal and temporal directions. The fascia dentata and the hilus together make up the dentate gyrus. As with all regions of the hippocampus, the dentate gyrus also receives GABAergic and cholinergic input from the medial septum and the diagonal band of Broca." [Wikipedia:Fascia_dentata] comment: This class has been retired. Based on usage and FMA, we have added fascia dentata as a synonym for dentate gyrus. (Maryann Martone)[NIFSTD] synonym: "fascia dentata" RELATED [BIRNLEX:1191] synonym: "fascia dentata (crosby)" RELATED [BIRNLEX:1191] synonym: "fascia dentata hippocampi (shantha)" RELATED [BIRNLEX:1191] xref: UMLS:C0152314 property_value: editor_note "A quick perusal of definitions for fascia dentata suggests that it is sometimes used to refer to the entire dentate gyrus, in which case it should be a synonym, and sometimes to a specific cytoarchitectural field of dentate gyrus. More research is needed. In the meanwhile, I have not assigned it as a part of dentate gyrus, assigning instead the cytoarchitectural layers. (Maryann Martone)" xsd:string is_obsolete: true replaced_by: UBERON:0001885 consider: BIRNLEX:1191 consider: BTO:0002615 consider: neuronames:180 [Term] id: UBERON:0035561 name: styliform element def: "An unjointed, rod-like bony or cartilaginous structures that extend from distal limb joints in tetrapods." [DOI:10.1038/nature14423, https://github.com/obophenotype/uberon/issues/695] is_a: UBERON:0015021 ! forelimb endochondral element property_value: taxon_notes "in some mammals this is found in a cartilaginous state, and articulates with the lateral border of the carpus." xsd:string [Term] id: UBERON:0035562 name: intermediate pretectal nucleus synonym: "IPT" RELATED OMO:0003000 [DMBA:16598] xref: DMBA:16598 is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035563 name: magnocellular superficial pretectal nucleus def: "A nucleus that is part of the superficial pretectum and is characterized by large widely scattered cells." [ISBN:0471888893] synonym: "magnocellular superficial pretectal nuclei" EXACT OMO:0003004 [ZFA:0000235] synonym: "PSm" RELATED OMO:0003000 [ISBN:0471888893] xref: TAO:0000235 xref: ZFA:0000235 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035568 ! superficial pretectal nucleus relationship: never_in_taxon NCBITaxon:27686 {source="ISBN:0471888893"} relationship: never_in_taxon NCBITaxon:7900 {source="ISBN:0471888893"} property_value: external_definition "Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." xsd:string {source="ZFA:0000235"} [Term] id: UBERON:0035564 name: parvocellular superficial pretectal nucleus def: "A nucleus that is part of the superficial pretectum and is characterized by small cells." [ISBN:0471888893, ZFA:0000406] synonym: "parvocellular superficial pretectal nuclei" EXACT OMO:0003004 [ZFA:0000406] synonym: "PSp" RELATED OMO:0003000 [ISBN:0471888893] synonym: "superficial pretectal nucleus" BROAD SENSU [ISBN:0471888893, NCBITaxon:27686, NCBITaxon:7900] xref: TAO:0000406 xref: ZFA:0000406 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035568 ! superficial pretectal nucleus property_value: taxon_notes "in reedfishes and sturgeons this is the only nucleus in the superficial pretectal zone[ISBN:0471888893]" xsd:string [Term] id: UBERON:0035565 name: caudal pretectal nucleus def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000631] synonym: "caudal pretectal nuclei" EXACT OMO:0003004 [ZFA:0000631] synonym: "nucleus glomerulosus" RELATED [] synonym: "posterior pretectal nucleus" RELATED INCONSISTENT [ZFA:0000631] xref: TAO:0000631 xref: ZFA:0000631 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035568 ! superficial pretectal nucleus relationship: present_in_taxon NCBITaxon:32455 [Term] id: UBERON:0035566 name: central pretectal nucleus def: "Any nucleus found in the central pretectum." [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus praetectalis centralis" EXACT OMO:0003011 [ZFA:0000635] xref: TAO:0000635 xref: ZFA:0000635 is_a: UBERON:0014450 ! pretectal nucleus relationship: never_in_taxon NCBITaxon:40674 relationship: part_of UBERON:2000183 ! central pretectum relationship: present_in_taxon NCBITaxon:118040 {source="ISBN:0471888893"} relationship: present_in_taxon NCBITaxon:7898 {source="ISBN:0471888893"} property_value: external_definition "Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." xsd:string {source="ZFA:0000635"} property_value: taxon_notes "Lateral to the posterior commissure in Squalimorphi due to lateral movements of neurons during pretectal development[ISBN:0471888893]" xsd:string [Term] id: UBERON:0035567 name: accessory pretectal nucleus def: "Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000714] synonym: "APN" EXACT [ZFA:0000714] synonym: "nucleus praetectalis accessorius" EXACT OMO:0003011 [ZFA:0000714] xref: TAO:0000714 xref: ZFA:0000714 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035566 ! central pretectal nucleus [Term] id: UBERON:0035568 name: superficial pretectal nucleus def: "Any nucleus found in the superficial pretectum." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0014450 ! pretectal nucleus relationship: never_in_taxon NCBITaxon:40674 relationship: part_of UBERON:2000687 ! superficial pretectum relationship: present_in_taxon NCBITaxon:118040 {src="ISBN:0471888893"} property_value: taxon_notes "Lateral in Squalimorphi due to lateral movements of neurons during pretectal development[ISBN:0471888893]" xsd:string [Term] id: UBERON:0035569 name: periventricular pretectal nucleus def: "A nucleus medial to the central pretectal nucleus in the periventricular zone." [ISBN:0471888893] comment: Can be subdivided into dorsal and ventral[ISBN:0471888893] synonym: "periventricular pretectum" EXACT [ZFA:0000601] synonym: "pretectal periventricular nuclei" EXACT OMO:0003004 [ZFA:0000601] synonym: "pretectal periventricular nucleus" EXACT [ZFA:0000601] xref: TAO:0000601 xref: ZFA:0000601 is_a: UBERON:0006569 ! diencephalic nucleus is_a: UBERON:0014450 ! pretectal nucleus relationship: never_in_taxon NCBITaxon:40674 relationship: part_of UBERON:2000293 {source="ZFA"} ! synencephalon relationship: present_in_taxon NCBITaxon:118040 {src="ISBN:0471888893"} [Term] id: UBERON:0035570 name: tectothalamic tract synonym: "tectothalamic fibers" EXACT [NeuroNames:1424] synonym: "tectothalamic fibers" RELATED [NeuroNames:1424] synonym: "tectothalamic pathway" RELATED [NeuroNames:1424] synonym: "tectothalamic tract" RELATED [NeuroNames:1424] synonym: "ttp" RELATED OMO:0003000 [MBA:357] xref: MBA:357 xref: neuronames:1424 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0001908 ! optic tract [Term] id: UBERON:0035572 name: nucleus praetectalis profundus def: "A neural nucleus of the pretectal region that lies lateral to the posterior commissure and gives rise to widespread projections." [ISBN:0471888893] synonym: "nucleus pratectalis profundus" EXACT OMO:0003011 [] synonym: "profundal pretectal nucleus" EXACT [] is_a: UBERON:0014450 ! pretectal nucleus relationship: present_in_taxon NCBITaxon:8293 [Term] id: UBERON:0035573 name: dorsal pretectal periventricular nucleus synonym: "optic nucleus of posterior commissure" RELATED [ISBN:0471888893] synonym: "PPd" RELATED OMO:0003000 [ISBN:0471888893] is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035574 name: ventral pretectal periventricular nucleus synonym: "PPv" RELATED OMO:0003000 [ISBN:0471888893] is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035575 name: paracommissural nucleus of solitary tract xref: FMA:77466 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0035577 name: paracommissural periventricular pretectal nucleus synonym: "paracommissural nucleus" EXACT [ZFA:0000404] xref: TAO:0000404 xref: ZFA:0000404 is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035580 name: nucleus geniculatus of pretectum comment: Receives retinal input synonym: "nucleus geniculatus pretectalis" EXACT OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus relationship: present_in_taxon NCBITaxon:8459 {source="ISBN:0471888893"} relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035581 name: nucleus lentiformis of pretectum comment: Receives retinal input synonym: "nucleus lentiformis mesencephali" EXACT OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus relationship: present_in_taxon NCBITaxon:8459 {source="ISBN:0471888893"} relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035582 name: nucleus posteriodorsalis of pretectum comment: Receives retinal input synonym: "nucleus posteriodorsalis" EXACT OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus relationship: present_in_taxon NCBITaxon:8459 {source="ISBN:0471888893"} relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035583 name: nucleus lentiformis thalamus synonym: "nucleus lentiformis thalami" RELATED OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035584 name: ventral pretectal nucleus (sauropsida) synonym: "ventral pretectal nucleus" RELATED [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035585 name: tectal gray nucleus (Testudines) synonym: "griseum tectalis" EXACT OMO:0003011 [ISBN:0471888893] synonym: "tectal gray" RELATED [ISBN:0471888893] synonym: "tectal grey" RELATED [] is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035586 name: nucleus lentiformis mesencephali (Aves) def: "A pretectal nucleus in Aves that receives heavy retinal input and is hypothesized to be homologous to the nucleus of the optic tract of Mammals." [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035587 name: nucleus pretectalis diffusus is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035588 name: subpretectal complex of Aves def: "A nuclear complex in the ventral pretectal region." [ISBN:0471888893] is_a: UBERON:0003528 ! brain gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0035589 name: nucleus subpretectalis is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0035588 ! subpretectal complex of Aves [Term] id: UBERON:0035590 name: nucleus interstitio-pretectalis-subpretectalis is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0035588 ! subpretectal complex of Aves [Term] id: UBERON:0035591 name: lateral spiriform nucleus is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035592 name: medial spiriform nucleus is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035593 name: nucleus circularis of pretectum synonym: "nucleus circularis" BROAD [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035594 name: accessory optic system def: "Subdivision of visual system that processes movements of images across retina and regulates the movement of eyes to keep the image stable." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0035595 name: accessory optic tract synonym: "accessory optic fibers" RELATED [] synonym: "aot" RELATED OMO:0003000 [MBA:876] xref: MBA:876 xref: neuronames:1189 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0001908 ! optic tract relationship: part_of UBERON:0035594 ! accessory optic system [Term] id: UBERON:0035596 name: circular nucleus of antherior hypothalamic nucleus def: "A group of cells located in the central part of the anterior hypothalamic nucleus in the anterior hypothalamic region of the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). Functionally it belongs to the magnocellular neuroendocrine cell groups of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1853] comment: group of magnocellular elements arranged in a ring around a capillary bed. The cells are predominantly monopolar, tightly packed, and are flattened at the outer border of the ring. The entire nucleus is surrounded or encapsulated by myelinated fibers, hypothesized to be an osmoreceptor[PMID:974791] synonym: "circular nucleus" RELATED [NeuroNames:1853] synonym: "NC" RELATED OMO:0003000 [MBA:432] synonym: "nucleus circularis" BROAD OMO:0003011 [MBA:432] xref: MBA:432 xref: neuronames:1853 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 {source="MBA"} ! periventricular zone of hypothalamus [Term] id: UBERON:0035597 name: profundal placode def: "An embryonic structure positioned halfway between the prospective eye and ear, adjacent to the future midbrain-hindbrain boundary. The profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." [https://github.com/obophenotype/uberon/issues/693, PMID:21452441, XAO:0004093] synonym: "ophthalmic lobe of trigeminal placode" EXACT [NCBIBook:NBK53171] synonym: "ophthalmic lobe of trigeminal placode complex" EXACT [NCBIBook:NBK53171] synonym: "ophthalmic placode" EXACT [PMID:22512454] synonym: "profundus placode" EXACT [XAO:0004093] xref: XAO:0004093 is_a: UBERON:0009955 ! neurogenic placode relationship: part_of UBERON:0003070 ! trigeminal placode complex [Term] id: UBERON:0035598 name: maxillomandibular placode synonym: "maxillomandibular lobe of trigeminal placode complex" EXACT [NCBIBook:NBK53171] synonym: "trigeminal placode" BROAD [NCBIBook:NBK53171] is_a: UBERON:0009955 ! neurogenic placode relationship: part_of UBERON:0003070 ! trigeminal placode complex [Term] id: UBERON:0035599 name: profundal part of trigeminal ganglion complex synonym: "ophthalmic division of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "ophthalmic part of trigeminal ganglion" RELATED [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0004121 ! ectoderm-derived structure relationship: immediate_transformation_of UBERON:0035597 ! profundal placode relationship: part_of UBERON:0001675 ! trigeminal ganglion [Term] id: UBERON:0035601 name: maxillomandibular part of trigeminal ganglion complex synonym: "maxillomandibular division of trigeminal ganglion" RELATED [] synonym: "maxillomandibular part of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0004121 ! ectoderm-derived structure relationship: immediate_transformation_of UBERON:0035598 ! maxillomandibular placode relationship: part_of UBERON:0001675 ! trigeminal ganglion [Term] id: UBERON:0035602 name: collar nerve cord def: "A nerve tract found in marine worms that is located in the collar body region (three body regions in marine worms: proboscis, collar (extending into tentacle-fringed arms) and trunk)." [Bgee:AN, PMID:25903626] is_a: UBERON:0005053 ! primary nerve cord relationship: part_of UBERON:0035604 ! enteropneust collar [Term] id: UBERON:0035603 name: enteropneust proboscis def: "Anteriormost of the three body regions of an enteropneust." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Acorn_worm] is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0035604 name: enteropneust collar def: "Middle of the three body regions of an enteropneust." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Acorn_worm] is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0035605 name: enteropneust trunk def: "Posteriormost of the three body regions of an enteropneust." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Acorn_worm] is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0035606 name: cartilage of external acoustic meatus synonym: "cartilage of acoustic meatus" EXACT [FMA:61298] synonym: "cartilage of auditory canal" EXACT [FMA:61298] synonym: "cartilago meatus acustici" EXACT [FMA:TA] synonym: "external acoustic meatus cartilage" EXACT [FMA:61298] xref: FMA:61298 is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001352 ! external acoustic meatus relationship: part_of UBERON:0001867 ! cartilage of external ear [Term] id: UBERON:0035607 name: accessory nerve cord of dorsal region def: "Any longitudinally extending condensed cluster of neurons and processes that runs along the dorsal mid-line of the animal that is not the most prominent nerve cord." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Dorsal_nerve_cord] synonym: "dorsal cord" RELATED [WBbt:0006750] synonym: "dorsal nerve cord" NARROW [WBbt:0006750] xref: WBbt:0006750 is_a: UBERON:0011215 {source="cjm"} ! central nervous system cell part cluster relationship: never_in_taxon NCBITaxon:7711 [Term] id: UBERON:0035608 name: dura mater lymph vessel def: "Any lymph vessel that is located in the dura mater of the brain." [DOI:10.1038/nature14432, DOI:10.1111/joa.12381] comment: Louveau et al (DOI:10.1038/nature14432) claim the discovery of lymphatics in the cerebral dura mater, but this is disputed by Bucchieri et al (DOI:10.1111/joa.12381) synonym: "dural lymph vasculature" RELATED [] synonym: "dural lymph vessel" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0010743 ! meningeal cluster property_value: structure_notes "while Louveau et al (DOI:10.1038/nature14432) state this is within the CNS (thus overturning dogma about the presence of lymphatics in the CNS), in this ontology the dura" xsd:string [Term] id: UBERON:0035609 name: outer root sheath companion layer def: "The innermost layer of the outer root sheath." [http://www.keratin.com/aa/aa022.shtml#03] xref: BTO:0003970 is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0005942 {source="BTO"} ! hair outer root sheath property_value: structure_notes "It contains cells that are morphologically and biochemically different from the inner root sheath and outer root sheath. The cells of the companion layer are more flattened than the other cells of the outer root sheath and do not contain glycogen. In addition, a novel human type II cytokeratin, K6hf, is specifically expressed in the companion layer of the hair follicle" xsd:string [Term] id: UBERON:0035610 name: hair canal def: "Tubular connection between the epidermal surface and the most distal part of the inner root sheath. Contains the hair shaft." [DOI:10.1016/j.cub.2008.12.005] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0000014 ! zone of skin [Term] id: UBERON:0035611 name: hair peg def: "Column of keratinocytes growing into the dermis during embryonic hair follicle development. The concave proximal end starts to encase the dermal condensate, the future dermal papilla." [DOI:10.1016/j.cub.2008.12.005] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0035612 name: nasal turbinal def: "A skeletal element of the ethmoid region with complex morphology that are lined with mucuous membranes involved in either olfaction or air conditioning." [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, UBERON:cjm, Wikipedia:Nasal_concha] synonym: "concha" RELATED [EMAPA:25093] synonym: "conchae nasales" RELATED OMO:0003011 [Wikipedia:Nasal_concha] synonym: "nasal concha" RELATED [] synonym: "nasal turbinal" EXACT [] synonym: "nasal turbinal element" EXACT [] synonym: "nasal turbinate" EXACT [] synonym: "turbinal" EXACT [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] synonym: "turbinate" EXACT [] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011241 {source="ISBN:0073040584"} ! ethmoid region property_value: editor_note "consult http://www.ncbi.nlm.nih.gov/pubmed/25312359 to add missing structures, e.g. ectoturbinals" xsd:string property_value: taxon_notes "unossified in dinosaurs[http://palaeos.com/vertebrates/bones/braincase/ethmoid.html]" xsd:string [Term] id: UBERON:0035617 name: peripharyngeal space def: "The space filled with loose areolar tissue surrounding the pharynx; it is divided into two major divisions, the parapharyngeal space and the retropharyngeal space." [ISBN:0683400088, MGI:cs] xref: FMA:84964 xref: SCTID:314725004 xref: Wikipedia:Peripharyngeal_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0035618 name: parapharyngeal space def: "The portion of the peripharyngeal space limited by the lateral wall of the pharynx, the cervical vertebrae and medial pterygoid muscle." [ISBN:0683400088, MGI:cs] synonym: "lateral pharyngeal space" EXACT [FMA:55081] synonym: "lateral pharyngeal space" RELATED [CALOHA:TS-2357] synonym: "parapharyngeal space" EXACT [FMA:55081] synonym: "spatium parapharyngeum" EXACT [FMA:TA] xref: CALOHA:TS-2357 xref: FMA:55081 xref: MESH:D000080886 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:180439004 xref: SCTID:280190005 xref: Wikipedia:Parapharyngeal_space is_a: UBERON:0035617 {source="FMA"} ! peripharyngeal space [Term] id: UBERON:0035619 name: retropharyngeal space def: "The portion of the peripharyngeal space that is located posterior to the pharynx." [ISBN:0683400088, MGI:cs] synonym: "Henke's space" EXACT [ISBN:0683400088, MGI:cs] synonym: "postpharyngeal space" EXACT [ISBN:0683400088, MGI:cs] synonym: "spatium retropharyngeum" EXACT OMO:0003011 [FMA:84965, FMA:TA] xref: FMA:84965 is_a: UBERON:0035617 {source="FMA"} ! peripharyngeal space [Term] id: UBERON:0035634 name: quadrant of breast def: "The part of the breast that is bordered by the intermammary line and a perpendicular line bisecting the nipple." [UBERON:cjm] synonym: "breast quadrant" EXACT [FMA:61373] xref: FMA:61373 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000310 ! breast [Term] id: UBERON:0035635 name: upper quadrant of breast is_a: UBERON:0035634 ! quadrant of breast [Term] id: UBERON:0035636 name: lower quadrant of breast is_a: UBERON:0035634 ! quadrant of breast [Term] id: UBERON:0035637 name: inner quadrant of breast is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035634 ! quadrant of breast [Term] id: UBERON:0035638 name: outer quadrant of breast is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035634 ! quadrant of breast [Term] id: UBERON:0035639 name: ocular adnexa def: "The parts of the orbital region that are outside of the the eyeball, including the lacrimal apparatus, the extraocular muscles and the eyelids, eyelashes, eyebrows and the conjunctiva." [HPO:pr, http://medical-dictionary.thefreedictionary.com/ocular+adnexa, https://github.com/obophenotype/uberon/issues/1132, UBERON:cjm] synonym: "accessory parts of orbital region" RELATED [] synonym: "accessory visual structures" RELATED [FMA:76554, Wikipedia:Accessory_visual_structures] synonym: "accessory visual structures set" RELATED [FMA:76554] synonym: "adnexa oculi" EXACT OMO:0003011 [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] synonym: "adnexal parts of orbital region" RELATED [] synonym: "appendage of eye" RELATED [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] synonym: "appendages of the eye" RELATED OMO:0003004 [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] synonym: "eye adnexa" RELATED [] synonym: "set of accessory visual structures" RELATED [FMA:76554] synonym: "structurae oculi accessoriae" RELATED OMO:0003011 [Wikipedia:Accessory_visual_structures] xref: FMA:76554 xref: NCIT:C32574 xref: SCTID:120612006 xref: UMLS:C0229243 xref: Wikipedia:Accessory_visual_structures is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0004088 ! orbital region [Term] id: UBERON:0035640 name: middle vesical artery def: "The middle vesical artery, usually a branch of the superior vesical artery, is distributed to the fundus of the bladder and the seminal vesicles." [Wikipedia:Middle_vesical_artery] comment: This artery is not usually described in modern anatomy textbooks. Instead, it is described that the superior vesical artery may exist as multiple vessels that arise from a common origin subset: human_reference_atlas xref: Wikipedia:Middle_vesical_artery is_a: UBERON:0001311 ! inferior vesical artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035642 name: laryngeal nerve def: "Any nerve that innervates the larynx." [UBERON:cjm] xref: MESH:D007823 xref: SCTID:307013006 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0035646 name: anterior superior alveolar nerve def: "The anterior superior alveolar branch (anterior superior dental branch), of considerable size, is given off from the maxillary nerve just before its exit from the infraorbital foramen; it descends in a canal in the anterior wall of the maxillary sinus, and divides into branches which supply the incisor and canine teeth. It communicates with the middle superior alveolar branch, and gives off a nasal branch, which passes through a minute canal in the lateral wall of the inferior meatus, and supplies the mucous membrane of the anterior part of the inferior meatus and the floor of the nasal cavity, communicating with the nasal branches from the sphenopalatine ganglion." [Wikipedia:Anterior_superior_alveolar_nerve] synonym: "anterior superior alveolar branch" RELATED [Wikipedia:Anterior_superior_alveolar_nerve] synonym: "anterior superior dental nerve" EXACT [FMA:52935] xref: FMA:52935 xref: SCTID:280241004 xref: Wikipedia:Anterior_superior_alveolar_nerve is_a: UBERON:0018398 {source="FMA"} ! superior alveolar nerve [Term] id: UBERON:0035647 name: posterior auricular nerve def: "A branch of the facial nerve that innervates the posterior auricular and intrinsic muscles of the auricle and, through its occipital branch, innervates the occipital belly of the occipitofrontal muscle." [http://dictionary.reference.com/browse/posterior+auricular+nerve] synonym: "auricularis posterior branch of facial nerve" EXACT [FMA:53278] synonym: "posterior auricular branch of the facial" RELATED [Wikipedia:Posterior_auricular_nerve] xref: FMA:53278 xref: SCTID:280277006 xref: Wikipedia:Posterior_auricular_nerve is_a: UBERON:0035648 ! nerve innervating pinna [Term] id: UBERON:0035648 name: nerve innervating pinna def: "Any nerve that innervates the pinna." [UBERON:cjm] synonym: "auricular nerve" EXACT [MA:0001232] xref: EMAPA:36513 xref: MA:0001232 is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0035649 name: nerve of penis def: "Any nerve that innervates the penis." [UBERON:cjm] synonym: "penile nerve" EXACT [] synonym: "penis nerve" EXACT [] xref: EMAPA:35057 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0035650 name: nerve of clitoris def: "Any nerve that innervates the clitoris." [UBERON:cjm] subset: human_reference_atlas synonym: "clitoral nerve" EXACT [] synonym: "clitoris nerve" EXACT [] xref: EMAPA:35044 is_a: UBERON:0001021 ! nerve relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035651 name: glans xref: Wikipedia:Glans is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0005156 ! reproductive structure relationship: develops_from UBERON:0013238 ! future glans relationship: part_of UBERON:0003133 ! reproductive organ [Term] id: UBERON:0035652 name: fibular nerve def: "Any nerve that innervates the fibularis. Includes the common fibular nerve, and its branches." [UBERON:cjm] subset: grouping_class synonym: "peroneal nerve" EXACT [] xref: EMAPA:36511 xref: MESH:D010543 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0035655 name: paraumbilical vein def: "The small superficial veins that arise from the cutaneous veins, and run from the umbilicus along the round ligament of the liver; these terminate as accessory portal veins in the liver." [https://github.com/obophenotype/uberon/issues/1134, ISBN:0683400088, MGI:cs, PMID:7400038] subset: human_reference_atlas synonym: "para-umbilical vein" RELATED [Wikipedia:Paraumbilical_vein] synonym: "para-umbilical veins" RELATED OMO:0003004 [FMA:71591] synonym: "para-umbilical veins set" RELATED OMO:0003004 [FMA:71591] synonym: "paraumbilical vasculature" RELATED [] synonym: "parumbilical vein" RELATED [Wikipedia:Paraumbilical_vein] synonym: "parumbilical veins" RELATED OMO:0003004 [Wikipedia:Paraumbilical_vein] synonym: "vein of Sappey" RELATED [FMA:71591] synonym: "veins of Sappey" RELATED OMO:0003004 [FMA:71591] synonym: "venae paraumbilicales" EXACT OMO:0003011 [FMA:TA] xref: EMAPA:37228 {source="MA:th"} xref: FMA:71591 xref: SCTID:286094009 xref: Wikipedia:Paraumbilical_vein is_a: UBERON:0013126 ! vein of abdomen relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035659 name: deep facial vein def: "The anterior facial vein receives a branch of considerable size, the deep facial vein, from the pterygoid venous plexus." [Wikipedia:Deep_facial_vein] subset: human_reference_atlas xref: FMA:50916 xref: Wikipedia:Deep_facial_vein is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035662 name: parotid vein subset: human_reference_atlas synonym: "anterior parotid vein" EXACT [FMA:50919] synonym: "parotid branch of facial vein" EXACT [FMA:50919] xref: FMA:50919 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035675 name: anterior facial vein def: "A vein that represents a continuation of the angular vein and lies behind the facial artery." [ncithesaurus:Anterior_Facial_Vein, NCITID__Anterior_Facial_Vein] xref: EMAPA:37133 {source="MA:th"} xref: MA:0002116 xref: NCIT:C52687 xref: UMLS:C1711319 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0035676 name: secondary yolk sac cavity synonym: "cavity of definitive yolk sac" EXACT [FMA:305890] synonym: "cavity of secondary yolk sac" EXACT [FMA:305890] synonym: "definitive yolk sac cavity" EXACT [FMA:305890] synonym: "secondary yolk sac cavity" EXACT [EHDAA2:0001821, FMA:305890] synonym: "secondary yolk sac space" EXACT [FMA:305890] xref: EHDAA2:0001821 xref: FMA:305890 is_a: UBERON:0005251 ! yolk sac cavity is_a: UBERON:0009743 ! visceral yolk sac cavity [Term] id: UBERON:0035677 name: primary yolk sac cavity synonym: "cavity of primary yolk sac" EXACT [FMA:305888] synonym: "primary yolk sac cavity" EXACT [FMA:305888] synonym: "primary yolk sac space" EXACT [FMA:305888] xref: EHDAA2:0001503 xref: EMAPA:36039 xref: FMA:305888 is_a: UBERON:0005251 ! yolk sac cavity relationship: develops_from UBERON:0000090 {source="EHDAA2"} ! blastocele [Term] id: UBERON:0035753 name: capillary plexus def: "A network of capillaries." [UBERON:cjm] synonym: "capillary network" EXACT [FMA:45633] xref: FMA:45633 is_a: UBERON:0004537 ! blood vasculature property_value: external_ontology_notes "in FMA this is part_of an intestinal villus" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0035754 name: pulmonary capillary plexus synonym: "capillary network of lung" EXACT [FMA:264928] synonym: "pulmonary capillary network" EXACT [FMA:264928] xref: FMA:264928 is_a: UBERON:0035753 ! capillary plexus relationship: part_of UBERON:0008886 ! pulmonary vascular system [Term] id: UBERON:0035755 name: systemic capillary plexus synonym: "systemic capillary network" EXACT [FMA:264934] xref: FMA:264934 is_a: UBERON:0035753 ! capillary plexus relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0035756 name: capillary network of liver synonym: "capillary plexus of liver" EXACT [FMA:280884] synonym: "hepatic capillary network" EXACT [FMA:280884] synonym: "hepatic capillary plexus" EXACT [] xref: EHDAA2:0004525 xref: FMA:280884 is_a: UBERON:0006877 ! vasculature of liver is_a: UBERON:0035755 ! systemic capillary plexus relationship: part_of UBERON:0006877 {source="EHDAA2"} ! vasculature of liver [Term] id: UBERON:0035757 name: embryonic capillary plexus synonym: "embryonic venous capillary plexus" EXACT [EHDAA2:0004540] xref: EHDAA2:0004540 is_a: UBERON:0035753 ! capillary plexus relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0035758 name: peritubular capillary plexus of kidney synonym: "peritubular capillary network of kidney" EXACT [FMA:272218] synonym: "peritubular capillary plexus" EXACT [FMA:272218] xref: FMA:272218 xref: SCTID:36447007 is_a: UBERON:0035762 ! capillary network of kidney [Term] id: UBERON:0035762 name: capillary network of kidney synonym: "capillary plexus of kidney" EXACT [FMA:280922] xref: FMA:280922 is_a: UBERON:0006544 ! kidney vasculature is_a: UBERON:0035753 ! capillary plexus [Term] id: UBERON:0035763 name: cavity of cardiac chamber synonym: "cardiac chamber cavity" EXACT [FMA:9464] synonym: "heart cavity" EXACT [FMA:9464] synonym: "heart lumen" EXACT [EHDAA2:0004181] xref: EHDAA2:0004181 xref: FMA:9464 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0035764 name: pulmonary lymph node synonym: "intrapulmonary lymph node" EXACT [FMA:5968] synonym: "pulmonary node" EXACT [FMA:5968] xref: FMA:5968 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0008886 ! pulmonary vascular system [Term] id: UBERON:0035765 name: subsegmental lymph node def: "The lymph nodes around the subsegmental bronchi." [ncithesaurus:Subsegmental_Lymph_Node, NCITID__Subsegmental_Lymph_Node] xref: FMA:276861 xref: NCIT:C28745 xref: UMLS:C1515031 is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node [Term] id: UBERON:0035766 name: median lobe of prostate def: "The upper, smaller part of the prostate between the ejaculatory ducts and the urethra." [ncithesaurus:Middle_Lobe_of_the_Prostate] synonym: "Albarran's gland" EXACT [FMA:45701] synonym: "cranial part of prostate" EXACT [FMA:45701] synonym: "lobus medius prostatae" EXACT OMO:0003011 [FMA:TA] synonym: "middle lobe of prostate" EXACT [FMA:45701] synonym: "pars proximalis (prostata)" EXACT [FMA:45701] synonym: "pars proximalis prostatae" EXACT OMO:0003011 [FMA:TA] synonym: "proximal part of prostate" EXACT [FMA:45701] synonym: "proximal part of prostate gland" EXACT [FMA:45701] xref: FMA:45701 xref: NCIT:C13094 xref: SCTID:245466000 is_a: UBERON:0001328 {source="FMA"} ! lobe of prostate [Term] id: UBERON:0035767 name: intrapulmonary bronchus xref: FMA:223208 xref: NCIT:C12930 xref: UMLS:C1512970 is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0035768 name: coccygeal nerve plexus def: "The coccygeal plexus is a plexus of nerves near the coccyx bone." [Wikipedia:Coccygeal_plexus] subset: human_reference_atlas synonym: "coccygeal plexus" EXACT [FMA:45356] synonym: "plexus coccygeus" EXACT OMO:0003011 [FMA:TA] xref: FMA:45356 xref: SCTID:280355009 xref: Wikipedia:Coccygeal_plexus is_a: UBERON:0001813 {source="FMA"} ! spinal nerve plexus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035769 name: mesenteric ganglion xref: SCTID:314754005 is_a: UBERON:0003964 ! prevertebral ganglion relationship: part_of UBERON:0035771 ! mesenteric plexus [Term] id: UBERON:0035770 name: inferior mesenteric nerve plexus def: "The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses." [Wikipedia:Inferior_mesenteric_plexus] subset: human_reference_atlas synonym: "inferior mesenteric plexus" EXACT [FMA:6641] synonym: "plexus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] xref: FMA:6641 xref: SCTID:362495005 xref: Wikipedia:Inferior_mesenteric_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0035771 ! mesenteric plexus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035771 name: mesenteric plexus subset: human_reference_atlas xref: SCTID:314752009 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035772 name: aortic plexus subset: human_reference_atlas xref: FMA:80133 is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035773 name: abdominal nerve plexus def: "The abdominal aortic plexus (aortic plexus) is formed by branches derived, on either side, from the celiac plexus and ganglia, and receives filaments from some of the lumbar ganglia. It is situated upon the sides and front of the aorta, between the origins of the superior and inferior mesenteric arteries. From this plexus arise part of the spermatic, the inferior mesenteric, and the hypogastric plexuses; it also distributes filaments to the inferior vena cava." [Wikipedia:Abdominal_aortic_plexus] synonym: "abdominal aortic nerve plexus" EXACT [FMA:6640] synonym: "abdominal aortic plexus" EXACT [FMA:6640] synonym: "plexus aorticus abdominalis" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus aorticus abdominalis" EXACT OMO:0003011 [FMA:TA] synonym: "preaortic nerve plexus" EXACT [FMA:6640] xref: FMA:6640 xref: SCTID:362491001 xref: Wikipedia:Abdominal_aortic_plexus is_a: UBERON:0035772 ! aortic plexus [Term] id: UBERON:0035774 name: thoracic aortic plexus def: "The thoracic aortic plexus is a sympathetic plexus in the region of the thoracic aorta." [Wikipedia:Thoracic_aortic_plexus] synonym: "plexus aorticus thoracicus" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus aorticus thoracicus" EXACT OMO:0003011 [FMA:TA] synonym: "thoracic aortic nerve plexus" EXACT [FMA:77574] xref: FMA:77574 xref: Wikipedia:Thoracic_aortic_plexus is_a: UBERON:0035772 ! aortic plexus [Term] id: UBERON:0035775 name: submandibular region def: "The region between the mandible and the hyoid bone that contains the submandibular and sublingual glands, suprahyoid muscles, submandibular ganglion, and lingual artery." [https://github.com/obophenotype/uberon/issues/1137] synonym: "digastric triangle" NARROW [FMA:57779, Wikipedia:Submandibular_triangle] synonym: "submandibular triangle" NARROW [FMA:57779] synonym: "submaxillary triangle" NARROW [FMA:57779, Wikipedia:Submandibular_triangle] synonym: "trigonum submandibulare" NARROW OMO:0003011 [FMA:TA] xref: FMA:57779 xref: Wikipedia:Submandibular_triangle is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000974 ! neck property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Musculi_coli_base%2C_my_edits_for_tringles%2C_labeled_triangles%2C_Submandib.svg/500px-Musculi_coli_base%2C_my_edits_for_tringles%2C_labeled_triangles%2C_Submandib.svg.png" xsd:anyURI property_value: external_ontology_notes "we place submandibular triangle from FMA here, although this may be a narrower region with more precise boundaries" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0035776 name: accessory ciliary ganglion def: "A parasympathetic ganglion located on the short ciliary nerve differentiated from the main ciliary ganglion by virtue of the fact that it had no root derived directly from the inferior trunk of the oculomotor nerve and it never attaches to this nerve." [PMID:2802184] is_a: UBERON:0035783 ! ganglion of ciliary nerve relationship: mutually_spatially_disjoint_with UBERON:0001643 ! oculomotor nerve relationship: part_of UBERON:0035639 {source="http://orcid.org/0000-0001-9114-8737"} ! ocular adnexa property_value: taxon_notes "tested for and found to be present in pig, sika deer, domestic sheep, horse, cat, fox, racoon dog, marten, rat, rabbit, crab-eating macaque, japanese macaque and human[PMID:2802184]" xsd:string [Term] id: UBERON:0035783 name: ganglion of ciliary nerve def: "Any parasympathetic ganglion that extends fibers into the short ciliary nerve. Includes both the main and acccessory ciliary ganglia." [UBERON:cjm] is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0004088 ! orbital region [Term] id: UBERON:0035784 name: seminal clot def: "A portion of semen in a coagulated state." [http://orcid.org/0000-0002-6601-2165, PMID:18482984] synonym: "seminal coagulum" EXACT [PMID:18482984] is_a: UBERON:0001968 ! semen [Term] id: UBERON:0035785 name: telencephalic song nucleus HVC def: "A nucleus in the brain of songbirds located in the caudal nidopallium, projecting to the song motor pathway via the robust nucleus of the arcopallium and to the Anterior Forebrain Pathway via the basal ganglia nucleus Area X." [GOC:mr, https://github.com/geneontology/go-ontology/issues/12057, Wikipedia:HVC_(avian_brain_region)] synonym: "higher vocal centre" RELATED DEPRECATED [BTO:0003390, PMID:15313771] synonym: "HVC" BROAD OMO:0003000 [Wikipedia:HVC_(avian_brain_region)] synonym: "HVc" RELATED DEPRECATED [PMID:15313771] synonym: "HVC (avian brain region)" EXACT [Wikipedia:HVC_(avian_brain_region)] synonym: "hyperstriatum ventrale" RELATED DEPRECATED [BTO:0003390] synonym: "pars caudale" RELATED [BTO:0003390] synonym: "pars caudalis (HVc)" EXACT DEPRECATED [Wikipedia:HVC_(avian_brain_region)] synonym: "telencephalic song nucleus HVC" EXACT [BTO:0003390] xref: BTO:0003390 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007334 {source="Wikipedia"} ! nidopallium [Term] id: UBERON:0035786 name: layer of CA1 field subset: non_informative xref: FMA:277844 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0003881 ! CA1 field of hippocampus [Term] id: UBERON:0035787 name: layer of CA2 field subset: non_informative xref: FMA:277846 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0003882 ! CA2 field of hippocampus [Term] id: UBERON:0035788 name: layer of CA3 field subset: non_informative xref: FMA:277848 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0003883 ! CA3 field of hippocampus [Term] id: UBERON:0035802 name: alveus of CA2 field def: "Part of alveus lying within hippocampal sector CA2." [UBERON:cjm] xref: FMA:277876 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0035803 name: extrapyramidal tract system def: "A neural network located in the brain that is part of the motor system involved in the coordination of movement that is distinct from the pyramidal tract." [Wikipedia:Extrapyramidal_system] synonym: "eps" RELATED OMO:0003000 [MBA:1000] synonym: "extra-pyramidal tract" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal fibre" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal motor system" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal pathway" RELATED [NeuroNames:2070] synonym: "extrapyramidal system" RELATED [NeuroNames:2070] synonym: "extrapyramidal tracts" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramindal system" RELATED [Wikipedia:Extrapyramidal_system] xref: MBA:1000 xref: MESH:D005116 xref: neuronames:2070 xref: neuronames:3015 xref: SCTID:362288003 xref: SCTID:362400005 xref: Wikipedia:Extrapyramidal_system is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0025525 ! motor system [Term] id: UBERON:0035804 name: future mouth def: "The primordial mouth region of the developing head." [MP:0003119] synonym: "primitive mouth" EXACT [FMA:293105] synonym: "primordial mouth" EXACT [] xref: FMA:293105 is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0007026 ! presumptive gut [Term] id: UBERON:0035805 name: muscle layer of sigmoid colon def: "A muscle layer that is part of the sigmoid colon." [https://github.com/obophenotype/uberon/issues/1162] synonym: "muscularis externa of sigmoid colon" EXACT [FMA:15028] synonym: "muscularis propria of sigmoid colon" EXACT [] synonym: "sigmoid colon muscularis propria" EXACT [] synonym: "sigmoideum muscularis" RELATED [] synonym: "tunica muscularis colon sigmoideum" RELATED [] xref: FMA:15028 is_a: UBERON:0012489 ! muscle layer of colon relationship: part_of UBERON:0001159 ! sigmoid colon [Term] id: UBERON:0035806 name: Hensen stripe def: "The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells." [MGI:anna] synonym: "Hensen's stripe" EXACT [MGI:anna] is_a: UBERON:0005764 {source="cjm"} ! acellular membrane relationship: part_of UBERON:0001855 {source="cjm"} ! cochlear duct of membranous labyrinth property_value: structure_notes "Hensen's stripe is continuous with a more external homogeneous basal layer, from which a marginal band of an amorphous substance originates; the marginal net extends from the marginal band and attaches the lateral border of the TM to Hensen's cells of the organ of Corti. Hensen's stripe and the homogeneous basal layers display interruptions through which the fibrillar structure of the TM is visible" xsd:string [Term] id: UBERON:0035807 name: area X of basal ganglion def: "A nucleus in the basal ganglion of songbirds." [GOC:mr, https://github.com/geneontology/go-ontology/issues/12142, PMID15116398, PMID:18398825] synonym: "area X" BROAD [] is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002420 ! basal ganglion [Term] id: UBERON:0035808 name: robust nucleus of arcopallium def: "A specialized nucleus within the intermediate archistriatum of songbirds, required for and active during the production of learned song." [BTO:0003366, Wikipedia:Arcopallium] synonym: "RA" RELATED [BTO:0003366] synonym: "robust nucleus of the arcopallium" RELATED DEPRECATED [BTO:0003366, Wikipedia:Arcopallium] synonym: "telencephalic song nucleus RA" RELATED [BTO:0003366] xref: BTO:0003366 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007350 {source="BTO"} ! arcopallium [Term] id: UBERON:0035809 name: serous cavity xref: FMA:12241 xref: SCTID:304404008 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0035814 name: pericardial fat def: "The sum of epicardial and paracardial fat deposits." [DOI:10.5935/abc.20130138] xref: SCTID:42267001 xref: ZFA:0005765 is_a: UBERON:0035818 ! visceral fat [Term] id: UBERON:0035815 name: paracardial fat def: "Fat deposits in the mediastinum outside the parietal pericardium ." [DOI:10.5935/abc.20130138] synonym: "intrathoracic fat" EXACT [DOI:10.5935/abc.20130138] is_a: UBERON:0035814 ! pericardial fat [Term] id: UBERON:0035818 name: visceral fat def: "Any fat deposit surrounding a visceral organ." [UBERON:cjm] is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0035819 name: abdominopelvic cavity def: "The part of the ventral body cavity that is within the abdominal segment of the trunk, which encompasses the abdomen proper plus pelvic cavity." [UBERON:cjm] synonym: "cavitas abdominis et pelvis" EXACT OMO:0003011 [FMA:TA] xref: FMA:12267 xref: Wikipedia:Abdominopelvic_cavity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002323 ! coelemic cavity lumen [Term] id: UBERON:0035820 name: peritoneal sac def: "A serous sac that is the aggregate of the peritoneum and the peritoneal cavity, located in the abdominal cavity." [https://github.com/obophenotype/uberon/issues/86] synonym: "peritoneal component" RELATED [EMAPA:16137] xref: EMAPA:16137 xref: FMA:9908 is_a: UBERON:0002075 ! viscus is_a: UBERON:0005906 ! serous sac [Term] id: UBERON:0035825 name: left adrenal gland cortex def: "The thick outer layer of the adrenal gland that is in the left side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] synonym: "cortex of left adrenal gland" EXACT [FMA:69089] synonym: "cortex of left suprarenal gland" EXACT [FMA:69089] synonym: "left adrenal cortex" EXACT [FMA:69089] xref: FMA:69089 is_a: UBERON:0001235 {is_inferred="true"} ! adrenal cortex relationship: part_of UBERON:0001234 ! left adrenal gland [Term] id: UBERON:0035826 name: left adrenal gland medulla def: "The adrenal gland medulla that is in the left side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] synonym: "left adrenal medulla" EXACT [FMA:69092] synonym: "medulla of left adrenal gland" EXACT [FMA:69092] synonym: "medulla of left suprarenal gland" EXACT [FMA:69092] xref: FMA:69092 is_a: UBERON:0001236 {is_inferred="true"} ! adrenal medulla relationship: part_of UBERON:0001234 ! left adrenal gland [Term] id: UBERON:0035827 name: right adrenal gland cortex def: "The thick outer layer of the adrenal gland that is in the right side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] synonym: "cortex of right adrenal gland" EXACT [FMA:69088] synonym: "cortex of right suprarenal gland" EXACT [FMA:69088] synonym: "right adrenal cortex" EXACT [FMA:69088] xref: FMA:69088 is_a: UBERON:0001235 {is_inferred="true"} ! adrenal cortex relationship: part_of UBERON:0001233 ! right adrenal gland [Term] id: UBERON:0035828 name: right adrenal gland medulla def: "The adrenal gland medulla that is in the right side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] synonym: "medulla of right adrenal gland" EXACT [FMA:69091] synonym: "medulla of right suprarenal gland" EXACT [FMA:69091] synonym: "right adrenal medulla" EXACT [FMA:69091] xref: FMA:69091 is_a: UBERON:0001236 {is_inferred="true"} ! adrenal medulla relationship: part_of UBERON:0001233 ! right adrenal gland [Term] id: UBERON:0035829 name: right gastroepiploic artery def: "Artery that runs from right to left along the greater curvature of the stomach, between the layers of the greater omentum, anastomosing with the left gastroepiploic branch of the splenic artery." [Wikipedia:Right_gastro-omental_artery] subset: human_reference_atlas synonym: "arteria gastro-omentalis dextra" EXACT OMO:0003011 [Wikipedia:Right_gastro-omental_artery] synonym: "arteria gastroepiploica dextra" EXACT OMO:0003011 [Wikipedia:Right_gastro-omental_artery] synonym: "arteria gastroomentalis dextra" EXACT OMO:0003011 [Wikipedia:Right_gastro-omental_artery] synonym: "right gastro-epiploic artery" EXACT [FMA:14781] synonym: "right gastro-omental artery" EXACT [FMA:14781] synonym: "right gastroepiploic" RELATED [Wikipedia:Right_gastro-omental_artery] synonym: "right gastroepiploic artery" RELATED [Wikipedia:Right_gastro-omental_artery] synonym: "right gastroomental artery" EXACT [FMA:14781] xref: FMA:14781 xref: SCTID:244271002 xref: Wikipedia:Right_gastro-omental_artery is_a: UBERON:0009025 ! gastroepiploic artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035830 name: left gastroepiploic artery def: "Artery that runs from left to right along the greater curvature of the stomach, between the layers of the greater omentum, and anastomoses with the right gastroepiploic." [Wikipedia:Left_gastro-omental_artery] subset: human_reference_atlas synonym: "arteria gastro-omentalis sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastro-omental_artery] synonym: "arteria gastroepiploica sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastro-omental_artery] synonym: "arteria gastroomentalis sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastro-omental_artery] synonym: "left gastro-epiploic artery" EXACT [FMA:14796] synonym: "left gastro-omental artery" EXACT [FMA:14796] synonym: "left gastroepiploic artery" RELATED [Wikipedia:Left_gastro-omental_artery] synonym: "left gastroepiploic branch" RELATED [Wikipedia:Left_gastro-omental_artery] synonym: "left gastroomental artery" EXACT [FMA:14796] synonym: "left inferior gastric artery" EXACT [FMA:14796] xref: FMA:14796 xref: SCTID:244270001 xref: Wikipedia:Left_gastro-omental_artery is_a: UBERON:0009025 ! gastroepiploic artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035831 name: costal diaphragm def: "The domain of the diaphragm that is a thin domed sheet of muscle composed of a radial array of myofibers extending laterally from the ribs and medially to a central tendon." [PMID:23586979] synonym: "costal part of diaphragm" EXACT [FMA:58277] synonym: "pars costalis diaphragmatis" EXACT OMO:0003011 [FMA:TA] xref: FMA:58277 xref: SCTID:368048007 is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001103 {source="PMID:23586979"} ! diaphragm [Term] id: UBERON:0035832 name: caval sphincter def: "A striated muscle sphincter that is an extension of the diaphragm and surrounds the vena cava." [DOI:10.1242/jeb.056127] synonym: "vena cava sphincter" EXACT [] is_a: UBERON:0007522 ! striated muscle sphincter relationship: present_in_taxon NCBITaxon:9709 property_value: function_notes "upon stimulation of right phrenic nerve, may cause complete closure of the caval passage to the right heart" xsd:string [Term] id: UBERON:0035833 name: lower esophagus muscularis layer synonym: "lower esophagus muscularis propria" EXACT [] synonym: "muscle coat of lower esophagus" EXACT [] is_a: UBERON:0011878 ! muscle layer of esophagus relationship: part_of UBERON:0013473 ! lower esophagus relationship: seeAlso FMA:63042 [Term] id: UBERON:0035834 name: lower esophagus mucosa is_a: UBERON:0002469 ! esophagus mucosa relationship: part_of UBERON:0013473 ! lower esophagus relationship: seeAlso FMA:63008 [Term] id: UBERON:0035835 name: apical region of left ventricle def: "Region around the apex of the cardiac left ventricle located at the bottom of the left ventricle inferior to both the mitral and aortic valve." [https://github.com/obophenotype/uberon/issues/1169, https://orcid.org/0000-0003-3308-6245] synonym: "apical zone of left ventricle" EXACT [FMA:225374] xref: FMA:225374 xref: SCTID:264843009 is_a: UBERON:0035837 ! apical region of heart ventricle relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0035836 name: apical region of right ventricle synonym: "apical zone of right ventricle" EXACT [FMA:230605] xref: FMA:230605 xref: SCTID:264913008 is_a: UBERON:0035837 ! apical region of heart ventricle relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0035837 name: apical region of heart ventricle synonym: "apex of cardiac ventricle" RELATED [MA:0003017] synonym: "apex of heart ventricle" RELATED [MA:0003017] synonym: "apical region of cardiac ventricle" EXACT [] xref: EMAPA:37425 {source="MA:th"} xref: MA:0003017 is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0035838 name: esophagogastric junction mucosa def: "Mucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] synonym: "gastro-esophageal junction mucosa" EXACT [EMAPA:27039] xref: EMAPA:27039 is_a: UBERON:0000344 ! mucosa relationship: part_of UBERON:0007650 ! esophagogastric junction [Term] id: UBERON:0035839 name: esophagogastric junction submucosa def: "Submucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] synonym: "gastro-esophageal junction submucosa" EXACT [EMAPA:27041] xref: EMAPA:27041 is_a: UBERON:0000009 ! submucosa relationship: part_of UBERON:0007650 ! esophagogastric junction [Term] id: UBERON:0035840 name: esophagogastric junction muscularis mucosa def: "Muscularis mucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] synonym: "gastro-esophageal junction muscularis mucosa" EXACT [EMAPA:27051] xref: EMAPA:27051 is_a: UBERON:0006676 ! muscularis mucosa relationship: part_of UBERON:0007650 ! esophagogastric junction [Term] id: UBERON:0035841 name: esophagogastric junction muscularis propria def: "Muscularis propria from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] synonym: "gastro-esophageal junction muscularis propria" EXACT [] is_a: UBERON:0006660 ! muscular coat relationship: part_of UBERON:0007650 ! esophagogastric junction [Term] id: UBERON:0035842 name: extensor digitorum brevis manus def: "An accessory extensor muscle of the hand found in some humans and other animals." [ISBN:9781439883365] synonym: "extensor brevis digitorum manus" EXACT [] synonym: "extensor digitorum brevis manus muscle" EXACT [] is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0001500 ! muscle of manus [Term] id: UBERON:0035843 name: lower esophagus submucosa is_a: UBERON:0001972 ! submucosa of esophagus relationship: part_of UBERON:0013473 ! lower esophagus relationship: seeAlso FMA:63038 [Term] id: UBERON:0035844 name: lower esophagus muscularis mucosa synonym: "lamina muscularis of lower esophagus" EXACT [] is_a: UBERON:0004648 ! esophagus muscularis mucosa relationship: part_of UBERON:0013473 ! lower esophagus relationship: seeAlso FMA:63062 [Term] id: UBERON:0035845 name: enthesis def: "The connective tissue between tendon and bone insertion sites, which acts to transmit tensile load from soft tissues to bone. They may be of the dense fibrous connective tissue or fibrocartilage type; fibrous entheses attach directly to bone or periosteum primarily via fibrous tissue, and fibrocartilaginous entheses attach to bone through a transitional layer of fibrocartilage from the fibrous tendon tissue the sites where tendons or ligaments insert into the bone. Recurring stress or inflammatory autoimmune disease can cause inflammation or occasionally fibrosis and calcification of the enthesis." [https://github.com/obophenotype/uberon/issues/1185, MGI:cs, PMID:25489552, PMID:26472070, Wikipedia:Enthesis] xref: SCTID:410054009 xref: Wikipedia:Enthesis is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0035846 name: fibrous enthesis comment: fibrous entheses attach directly to bone or periosteum primarily via fibrous tissue is_a: UBERON:0035845 ! enthesis [Term] id: UBERON:0035847 name: fibrocartilage enthesis comment: fibrocartilaginous entheses attach to bone through a transitional layer of fibrocartilage from the fibrous tendon tissue the sites where tendons or ligaments insert into the bone is_a: UBERON:0035845 ! enthesis [Term] id: UBERON:0035848 name: infraorbital margin def: "The infraorbital margin is the lower margin of the orbita." [Wikipedia:Infraorbital_margin] synonym: "inferior orbital rim" EXACT [] synonym: "infra-orbital margin" EXACT [FMA:53177, Wikipedia:Infraorbital_margin] synonym: "margo infraorbitalis" EXACT OMO:0003011 [FMA:TA] xref: FMA:53177 xref: SCTID:362642002 xref: Wikipedia:Infraorbital_margin is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0035849 ! orbital margin [Term] id: UBERON:0035849 name: orbital margin def: "The mostly sharp edge of the orbital opening that is the peripheral border of the base of the pyramidal orbit." [http://www.medilexicon.com/medicaldictionary.php?t=52793] synonym: "margin of orbit" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=52793] synonym: "margo orbitalis" EXACT OMO:0003011 [FMA:TA, http://www.medilexicon.com/medicaldictionary.php?t=52793] synonym: "orbital rim" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=52793] xref: FMA:53176 xref: SCTID:362641009 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001697 ! orbit of skull [Term] id: UBERON:0035850 name: infraorbital bridge def: "A ridge of bone connecting left and right orbital margins located beneath the eye sockets." [UBERON:cjm] synonym: "infra-orbital bridge" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0003129 ! skull relationship: present_in_taxon NCBITaxon:8499 property_value: depiction "http://media.eol.org/content/2010/03/24/02/63782_580_360.jpg" xsd:anyURI [Term] id: UBERON:0035872 name: primary somatosensory area barrel field layer 5 synonym: "barrel cortex layer 5" RELATED [NLX:157671] synonym: "SSp-bfd5" RELATED OMO:0003000 [MBA:1070] xref: MBA:1070 xref: NLX:157671 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035873 name: primary somatosensory area barrel field layer 1 synonym: "SSp-bfd1" RELATED OMO:0003000 [MBA:981] xref: MBA:981 xref: NLX:157672 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035874 name: primary somatosensory area barrel field layer 2/3 synonym: "barrel cortex layer 2/3" RELATED [NLX:157673] synonym: "SSp-bfd2/3" RELATED OMO:0003000 [MBA:201] xref: MBA:201 xref: NLX:157673 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035875 name: primary somatosensory area barrel field layer 6b synonym: "barrel cortex layer 6B" RELATED [NLX:157674] synonym: "SSp-bfd6b" RELATED OMO:0003000 [MBA:1062] xref: MBA:1062 xref: NLX:157674 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035876 name: primary somatosensory area barrel field layer 6a synonym: "barrel cortex layer 6A" RELATED [NLX:157675] synonym: "SSp-bfd6a" RELATED OMO:0003000 [MBA:1038] xref: MBA:1038 xref: NLX:157675 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035877 name: primary somatosensory area barrel field layer 4 synonym: "barrel cortex layer 4" RELATED [NLX:157676] synonym: "SSp-bfd4" RELATED OMO:0003000 [MBA:1047] xref: MBA:1047 xref: NLX:157676 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035878 name: subchondral region of epiphysis def: "The bone region of the epiphysis that provides underlying mechanical and physiological support for the cartilage of joint articular surfaces." [https://github.com/obophenotype/uberon/issues/1195, MGI:csmith, PMID:20392241, PMID:24084727] synonym: "subchondral bone" EXACT [] is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001437 {source="MGI:csmith"} ! epiphysis [Term] id: UBERON:0035879 name: frontomaxillary suture def: "A suture between the frontal bone and the frontal process of the maxilla." [http://medical-dictionary.thefreedictionary.com/frontomaxillary+suture] synonym: "frontomaxillary suture of skull" EXACT [FMA:52950] synonym: "sutura frontomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52950 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0035880 name: zygomaticomaxillary suture def: "A suture between the zygomatic bone and the zygomatic process of the maxilla." [http://medical-dictionary.thefreedictionary.com/zygomaticomaxillary+suture] synonym: "sutura infraorbitalis" EXACT OMO:0003011 [FMA:TA] synonym: "sutura zygomaticomaxillaris" EXACT OMO:0003011 [FMA:TA] synonym: "zygomaticomaxillary suture of skull" EXACT [FMA:52953] xref: FMA:52953 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0035881 name: ethmoidomaxillary suture def: "A suture between the orbital surface of the body of the maxilla with the orbital plate of the ethmoid bone." [http://medical-dictionary.thefreedictionary.com/ethmoidomaxillary+suture] synonym: "ethmoidomaxillary suture of skull" EXACT [FMA:52954] synonym: "sutura ethmoidomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52954 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0035882 name: sphenomaxillary suture def: "An inconstant suture between the pterygoid process of the sphenoid bone and the body of the maxilla." [http://medical-dictionary.thefreedictionary.com/sphenomaxillary+suture] synonym: "sphenomaxillary suture of skull" EXACT [FMA:52957] synonym: "sutura sphenomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52957 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0035883 name: lacrimomaxillary suture def: "A suture between the lacrimal bone and the maxilla." [http://medical-dictionary.thefreedictionary.com/lacrimomaxillary+suture] synonym: "lacrimomaxillary suture of skull" EXACT [FMA:52961] synonym: "sutura lacrimomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52961 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0035884 name: maxillary-premaxillary suture def: "A suture between the maxilla and premaxilla." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2139, MGI:csmith, PMID:21538817] synonym: "incisive suture" RELATED [MGI:csmith] synonym: "maxillary-premaxillary incisive suture" EXACT [UBERON:cjm] synonym: "premaxillary suture" RELATED [MGI:csmith] is_a: UBERON:0003685 ! cranial suture is_a: UBERON:2002260 ! premaxillary-maxillary joint property_value: taxon_notes "present in mouse [PMID:21538817]" xsd:string property_value: taxon_notes "transient in humans" xsd:string [Term] id: UBERON:0035885 name: dorsal auditory area synonym: "AUDd" RELATED OMO:0003000 [MBA:1011] xref: MBA:1011 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex [Term] id: UBERON:0035886 name: posterior parietal association areas synonym: "PTLp" RELATED OMO:0003000 [MBA:22] xref: MBA:22 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex [Term] id: UBERON:0035890 name: postrhinal area synonym: "VISpor" RELATED OMO:0003000 [MBA:312782628] xref: MBA:312782628 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035892 name: primary visual area, layer 6a synonym: "VISp6a" RELATED OMO:0003000 [MBA:33] xref: MBA:33 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035893 name: anteromedial visual area synonym: "VISam" RELATED OMO:0003000 [MBA:394] xref: MBA:394 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035894 name: anterolateral visual area synonym: "VISal" RELATED OMO:0003000 [MBA:402] xref: MBA:402 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035895 name: lateral visual area synonym: "VISl" RELATED OMO:0003000 [MBA:409] xref: MBA:409 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035897 name: posterolateral visual area synonym: "VISpl" RELATED OMO:0003000 [MBA:425] xref: MBA:425 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035900 name: posteromedial visual area synonym: "VISpm" RELATED OMO:0003000 [MBA:533] xref: MBA:533 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035904 name: primary visual area, layer 4 synonym: "VISp4" RELATED OMO:0003000 [MBA:721] xref: MBA:721 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035906 name: primary visual area, layer 5 synonym: "VISp5" RELATED OMO:0003000 [MBA:778] xref: MBA:778 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035907 name: primary visual area, layer 2/3 synonym: "VISp2/3" RELATED OMO:0003000 [MBA:821] xref: MBA:821 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035908 name: anterolateral visual area, layer 5 synonym: "VISal5" RELATED OMO:0003000 [MBA:233] xref: MBA:233 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area [Term] id: UBERON:0035909 name: posteromedial visual area, layer 6a synonym: "VISpm6a" RELATED OMO:0003000 [MBA:257] xref: MBA:257 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035911 name: postrhinal area, layer 4 synonym: "VISpor4" RELATED OMO:0003000 [MBA:312782640] xref: MBA:312782640 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area [Term] id: UBERON:0035912 name: rostrolateral visual area synonym: "VISrl" RELATED OMO:0003000 [MBA:417] xref: MBA:417 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal association areas [Term] id: UBERON:0035913 name: anteromedial visual area, layer 5 synonym: "VISam5" RELATED OMO:0003000 [MBA:433] xref: MBA:433 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area [Term] id: UBERON:0035914 name: posteromedial visual area, layer 4 synonym: "VISpm4" RELATED OMO:0003000 [MBA:501] xref: MBA:501 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035915 name: lateral visual area, layer 4 synonym: "VISl4" RELATED OMO:0003000 [MBA:573] xref: MBA:573 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035916 name: lateral visual area, layer 5 synonym: "VISl5" RELATED OMO:0003000 [MBA:613] xref: MBA:613 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035917 name: dorsal auditory area, layer 4 synonym: "AUDd4" RELATED OMO:0003000 [MBA:678] xref: MBA:678 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area [Term] id: UBERON:0035918 name: lateral visual area, layer 6a synonym: "VISl6a" RELATED OMO:0003000 [MBA:74] xref: MBA:74 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035919 name: posterolateral visual area, layer 4 synonym: "VISpl4" RELATED OMO:0003000 [MBA:869] xref: MBA:869 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area [Term] id: UBERON:0035920 name: rostrolateral area, layer 5 synonym: "VISrl5" RELATED OMO:0003000 [MBA:312782616] xref: MBA:312782616 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035912 {source="MBA"} ! rostrolateral visual area [Term] id: UBERON:0035922 name: intraculminate fissure of cerebellum def: "A fissure that divides the culmen lobule (lobules IV and V)." [MP:000999, PMID:1953602, UBERON:cjm] synonym: "fissura intraculminalis" EXACT OMO:0003011 [FMA:TA] synonym: "ICF" RELATED OMO:0003000 [DHBA:266441729] synonym: "intraculminate fissure" EXACT [FMA:83737, HBA:9409] xref: DHBA:266441729 xref: FMA:83737 xref: HBA:9409 xref: neuronames:1995 xref: RadLex:RID6872 xref: SCTID:369052000 is_a: UBERON:0003980 ! cerebellum fissure relationship: dubious_for_taxon NCBITaxon:9606 relationship: part_of UBERON:0007763 ! cerebellum vermis culmen property_value: taxon_notes "The culmen lobule (lobules IV/V) is a single structure in humans, but it is divided by the intraculminate fissure in many rodents. In some mouse strains such as SLJ/J, the intraculminate fissure is absent, in some strains such as DBA/2J it is present, and other strains (C57BL/10J and BALB/cJ) exhibit considerable variablility (PMID: 1953602).[MP]" xsd:string [Term] id: UBERON:0035924 name: radiation of corpus callosum def: "The spreading out of the fibers of the corpus callosum in the centrum semiovale of each cerebral hemisphere." [http://www.medilexicon.com/medicaldictionary.php?t=74819] synonym: "CCRD" RELATED OMO:0003000 [DHBA:12026] synonym: "corpus callosum radiation" EXACT [FMA:77693] synonym: "radiatio corporis callosi" EXACT OMO:0003011 [FMA:TA] synonym: "radiatio corporis callosi" RELATED OMO:0003011 [NeuroNames:1336] synonym: "radiations of corpus callosum" RELATED OMO:0003004 [HBA:265504962] synonym: "radiations of the corpus callosum" RELATED OMO:0003004 [NeuroNames:1336] xref: DHBA:12026 xref: FMA:77693 xref: HBA:265504962 xref: neuronames:1336 xref: SCTID:279308000 is_a: UBERON:0000122 {source="cjm"} ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002336 {source="HBA"} ! corpus callosum [Term] id: UBERON:0035925 name: central sulcus of insula synonym: "central fissure of insula" EXACT [FMA:83779] synonym: "central fissure of insula" RELATED [NeuroNames:112] synonym: "central fissure of island" EXACT [FMA:83779] synonym: "central fissure of island" RELATED [NeuroNames:112] synonym: "central insula sulcus" EXACT [FMA:83779] synonym: "central insula sulcus" RELATED [NeuroNames:112] synonym: "central insular sulcus" EXACT [FMA:83779] synonym: "central insular sulcus" RELATED [NeuroNames:112] synonym: "central sulcus of insula" EXACT [FMA:83779] synonym: "central sulcus of the insula" RELATED [NeuroNames:112] synonym: "CIS" RELATED OMO:0003000 [HBA:9399] synonym: "CSIN" RELATED OMO:0003000 [DHBA:13227] synonym: "fissura centralis insulae" EXACT OMO:0003011 [FMA:TA] synonym: "fissura centralis insulae" RELATED OMO:0003011 [NeuroNames:112] synonym: "sulcus centralis insulae" EXACT OMO:0003011 [FMA:TA] synonym: "sulcus centralis insulae" RELATED OMO:0003011 [NeuroNames:112] xref: DHBA:13227 xref: FMA:83779 xref: HBA:9399 xref: neuronames:112 xref: SCTID:279348008 is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002905 {source="HBA"} ! intralingual sulcus [Term] id: UBERON:0035926 name: preculminate fissure of cerebellum synonym: "fissura preculminalis" EXACT OMO:0003011 [FMA:TA] synonym: "PCF" RELATED OMO:0003000 [HBA:9408] synonym: "postcentral fissure of the cerebellum" RELATED [NeuroNames:652] synonym: "preculminate fissure" EXACT [FMA:83736] xref: FMA:83736 xref: HBA:9408 xref: MBA:1095 xref: neuronames:652 xref: RadLex:RID6871 is_a: UBERON:0003980 {source="FMA"} ! cerebellum fissure [Term] id: UBERON:0035927 name: sulcus of parietal lobe synonym: "parietal lobe sulci" EXACT OMO:0003004 [HBA:9370] synonym: "parietal lobe sulcus" EXACT [] synonym: "PLs" RELATED OMO:0003000 [HBA:9370] xref: HBA:9370 xref: SCTID:314145001 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0035928 name: dorsolateral part of supraoptic nucleus synonym: "dorsolateral part of the supraoptic nucleus" RELATED [NeuroNames:3151] synonym: "pars dorsolateralis nuclei supraoptici" EXACT OMO:0003011 [FMA:TA] synonym: "supraoptic nucleus proper" RELATED [NeuroNames:3151] synonym: "supraoptic nucleus, dorsolateral part" RELATED [NeuroNames:3151] synonym: "supraoptic nucleus, proper" RELATED [NeuroNames:3151] xref: FMA:76770 xref: HBA:4594 xref: neuronames:3151 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0001929 ! supraoptic nucleus [Term] id: UBERON:0035930 name: retro-olivary nucleus synonym: "nucleus retro-olivaris" EXACT OMO:0003011 [FMA:TA] synonym: "retro-olivary cell group" EXACT [FMA:72476] synonym: "RO" RELATED OMO:0003000 [DHBA:12467] xref: DHBA:12467 xref: FMA:72476 xref: HBA:9181 xref: neuronames:575 is_a: UBERON:0007247 {source="FMA"} ! nucleus of superior olivary complex [Term] id: UBERON:0035931 name: sagittal stratum synonym: "sst" RELATED OMO:0003000 [DHBA:12082] xref: DHBA:12082 xref: FMA:277107 xref: HBA:265505286 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0035932 name: anterior segment of paracentral lobule subset: human_reference_atlas synonym: "anterior part of paracentral lobule" EXACT [FMA:273508] synonym: "medial segment of precentral gyrus" EXACT [FMA:273508] synonym: "paracentral lobule, anterior part" EXACT [HBA:4071] synonym: "PCLa" RELATED OMO:0003000 [HBA:4071] xref: FMA:273508 xref: HBA:4071 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0016525 {source="HBA"} ! frontal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule relationship: present_in_taxon NCBITaxon:9606 property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0035933 name: paracentral lobule def: "The junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=404] synonym: "lobulus paracentralis" EXACT OMO:0003011 [FMA:TA] xref: BTO:0005601 xref: FMA:77534 xref: neuronames:1341 xref: RadLex:RID6449 xref: SCTID:279202002 xref: Talairach:1047 xref: Wikipedia:Paracentral_lobule is_a: UBERON:0000200 {source="FMA"} ! gyrus [Term] id: UBERON:0035934 name: posterior segment of paracentral lobule subset: human_reference_atlas synonym: "PCLp" RELATED OMO:0003000 [HBA:4125] synonym: "posterior part of paracentral lobule" EXACT [FMA:273511] xref: FMA:273511 xref: HBA:4125 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0001872 {source="HBA"} ! parietal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035935 name: Meyer's loop of optic radiation def: "Part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle." [http://radiopaedia.org/articles/meyer-loop] synonym: "inferior optic radiation" EXACT [NeuroNames:1466] synonym: "Meyer's loop" EXACT [] synonym: "or-lp" RELATED OMO:0003000 [HBA:265505214] xref: FMA:280849 xref: HBA:265505214 xref: neuronames:1466 is_a: UBERON:0022260 ! radiation of cerebral hemisphere relationship: part_of UBERON:0022264 ! optic radiation property_value: external_ontology_notes "in FMA this is disjoint from radiation of cerebral hemisphere, which conflicts with our radiopedia definition" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0035937 name: arcuate fasciculus def: "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus." [Wikipedia:Arcuate_fasciculus] synonym: "AF" RELATED OMO:0003000 [DHBA:10569] synonym: "arcuate fascicle" EXACT [FMA:276650] synonym: "arcuate fascicle" RELATED [Wikipedia:Arcuate_fasciculus] synonym: "arcuate fasciculus" RELATED [NeuroNames:2063] synonym: "ARF" RELATED OMO:0003000 [HBA:9231] synonym: "cerebral arcuate fasciculus" EXACT [FMA:276650] synonym: "fasciculus arcuatus" EXACT OMO:0003011 [FMA:TA] synonym: "fibrae arcuatae cerebri" RELATED OMO:0003011 [NeuroNames:2063] xref: DHBA:10569 xref: FMA:276650 xref: HBA:9231 xref: neuronames:2063 xref: Wikipedia:Arcuate_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0022246 {source="FMA"} ! superior longitudinal fasciculus relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0035938 name: amiculum of inferior olive synonym: "ami" RELATED OMO:0003000 [DHBA:12728] synonym: "amiculum of olive" EXACT [FMA:72611] synonym: "amiculum of the olive" EXACT [DHBA:12728] synonym: "amiculum olivae" EXACT [FMA:72611] synonym: "amiculum olivare" EXACT OMO:0003011 [FMA:TA] synonym: "inferior olive amiculum" EXACT [FMA:72611] xref: DHBA:12728 xref: FMA:72611 xref: HBA:265505538 xref: neuronames:752 is_a: UBERON:0019262 ! white matter of myelencephalon is_a: UBERON:0035939 {source="FMA"} ! amiculum relationship: part_of UBERON:0019262 {source="HBA"} ! white matter of myelencephalon [Term] id: UBERON:0035939 name: amiculum def: "A dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus." [http://medical-dictionary.thefreedictionary.com/amicula] synonym: "amicula" RELATED OMO:0003004 [] xref: FMA:83870 xref: RadLex:RID6708 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0035940 name: central medullary reticular nuclear complex synonym: "central group (medullary reticular formation)" EXACT [FMA:70663] synonym: "central group (medullary reticular formation)" RELATED [NeuroNames:729] synonym: "central medullary reticular complex" EXACT [FMA:70663] synonym: "central medullary reticular group" EXACT [FMA:70663] synonym: "central medullary reticular group" RELATED [NeuroNames:729] synonym: "CMRt" RELATED OMO:0003000 [HBA:9588] synonym: "nuclei centrales myelencephali" EXACT OMO:0003011 [FMA:TA] synonym: "nuclei centrales myelencephali" RELATED OMO:0003011 [NeuroNames:729] xref: FMA:70663 xref: HBA:9588 xref: neuronames:729 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="HBA"} ! medullary reticular formation [Term] id: UBERON:0035941 name: Kimura membrane def: "The thickening of the lower surface of the tectorial membrane into which the hair bundles of the outer hair cells are embedded." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2141, https://github.com/obophenotype/uberon/issues/1200, MGI:smith, PMID:18797289] is_a: UBERON:0005764 {source="cjm"} ! acellular membrane relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea [Term] id: UBERON:0035942 name: space between upper and lower jaws def: "The space between the upper jaw skeleton and lower jaw skeleton (including teeth) that is formed when when biting." [UBERON:cjm] synonym: "bite" RELATED [] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0035943 name: life cycle temporal boundary def: "A temporal boundary connecting two life cycle stages that follow in immediate succession. A temporal boundary is an abstract, instantaneous entity." [https://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: upper_level is_a: UBERON:0000000 ! processual entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0035944 name: life-death temporal boundary def: "A life cycle temporal boundary that marks the end of the life cycle of the organism." [https://github.com/obophenotype/uberon/issues/1172, https://orcid.org/0000-0002-6601-2165] subset: common_anatomy synonym: "death" RELATED INCONSISTENT [] synonym: "end of life" RELATED [] synonym: "end of life cycle" EXACT [] synonym: "moment of death" EXACT [] synonym: "time of death" EXACT [] is_a: UBERON:0035943 ! life cycle temporal boundary relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0035945 name: start of life cycle def: "A life cycle temporal boundary that marks the start of the life cycle of the organism." [https://github.com/obophenotype/uberon/issues/1172, https://orcid.org/0000-0002-6601-2165] subset: common_anatomy is_a: UBERON:0035943 ! life cycle temporal boundary relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0035946 name: start of neonate stage def: "A life cycle temporal boundary that marks the start of the neonate stage of the organism." [https://github.com/obophenotype/uberon/issues/1204, https://orcid.org/0000-0002-6601-2165] synonym: "birth" RELATED INCONSISTENT [] synonym: "moment of birth" EXACT [] synonym: "time of birth" EXACT [] is_a: UBERON:0035943 ! life cycle temporal boundary [Term] id: UBERON:0035955 name: obsolete cerebrum def: "Historically the term cerebrum has been used for several different parts of the CNS including the whole brain, the cerebral hemispheres and the sum of cerebral cortex and adjacent cerebral white matter. A thorough discussion of the definitional history is to be found in Anthoney-1994." [http://braininfo.rprc.washington.edu/Source.aspx?ID=118&questID=2068, neuronames:2068] is_obsolete: true consider: neuronames:2068 consider: UBERON:0001869 consider: UBERON:0001893 [Term] id: UBERON:0035956 name: epididymal lumen def: "The lumen of the epididymis." [GOC:DOS, https://github.com/obophenotype/uberon/issues/1209] synonym: "epididymis lumen" EXACT [FMA:18274] synonym: "lumen of epididymis" EXACT [FMA:18274] xref: FMA:18274 xref: SCTID:367722009 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0035957 name: antotic pillar def: "The posteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen [Term] id: UBERON:0035958 name: preoptic pillar def: "The anteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen [Term] id: UBERON:0035959 name: orbital pillar def: "A skeletal projection in the chondrocranium that developmentally connects the orbital cartilage and may develop into bone regions." [ISBN:978-0226870137, UBERON:cjm] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0035960 name: velum feeding organ def: "The locomotory and feeding organ, found in the larval veliger stage of bivalves." [BTO:0005405] synonym: "velum" EXACT [BTO:0005405] xref: BTO:0005405 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:0035961 name: obsolete proboscis def: "1: The trunk of an elephant; also: any long flexible snout. 2: Any of various elongated or extensible tubular processes as the sucking organ of a butterfly of the oral region of an invertebrate." [BTO:0001117] is_obsolete: true consider: BTO:0001117 consider: UBERON:0014479 [Term] id: UBERON:0035962 name: supravaginal part of cervix def: "Supravaginal portion of cervix: the part of the cervix uteri that does not protrude into the vagina." [BTO:0001851, Dorlands_Medical_Dictionary:MerckSource] synonym: "portio supravaginalis cervicis" EXACT OMO:0003011 [FMA:TA] xref: BTO:0001851 xref: FMA:77055 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: mutually_spatially_disjoint_with UBERON:0000996 ! vagina relationship: part_of UBERON:0000002 {source="FMA"} ! uterine cervix [Term] id: UBERON:0035963 name: epithelial lining fluid def: "Epithelial lining fluid forms a thin fluid layer that covers the mucosa of the alveoli, the small airways, and the large airways." [BTO:0005566, PMID:21948403] synonym: "ELF" RELATED [BTO:0005566] xref: BTO:0005566 xref: FMA:276456 is_a: UBERON:0006314 ! bodily fluid relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0035964 name: promontory of tympanic cavity def: "The promontory of the tympanic cavity, better known as the cochlear promontory is a rounded hollow prominence, formed by the projection outward of the first turn of the cochlea. It is placed between the fenestrae, and is furrowed on its surface by small grooves, for the lodgement of branches of the tympanic plexus. A minute spicule of bone frequently connects the promontory to the pyramidal eminence." [Wikipedia:Promontory_of_tympanic_cavity] synonym: "promontorium" RELATED [Wikipedia:Promontory_of_tympanic_cavity] synonym: "promontorium tympani" EXACT OMO:0003011 [FMA:TA] synonym: "promontory of the tympanic cavity" RELATED [Wikipedia:Promontory_of_tympanic_cavity] synonym: "tympanic cavity promontory" EXACT [FMA:77694] xref: BTO:0003089 xref: FMA:77694 xref: Wikipedia:Promontory_of_tympanic_cavity is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0035965 name: wall of blood vessel synonym: "blood vessel wall" EXACT [FMA:67473] synonym: "vascular wall" RELATED [BTO:0004378] xref: BTO:0004378 xref: EMAPA:37987 {source="MA:th"} xref: FMA:67473 is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0035966 name: scleral lamina cribrosa def: "The perforated part of the sclera through which pass the axons of the retinal ganglion cells." [BTO:0004277, Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas synonym: "lamina cribrosa of sclera" EXACT [FMA:58371] synonym: "lamina cribrosa of sclera" RELATED [BTO:0004277] synonym: "lamina cribrosa sclerae" EXACT OMO:0003011 [FMA:TA] xref: BTO:0004277 xref: FMA:58371 xref: SCTID:281086001 is_a: UBERON:0004923 {source="FMA"} ! organ component layer relationship: part_of UBERON:0001773 {source="BTO"} ! sclera relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035967 name: alveolar mucosa def: "The mucous membrane apical to the attached gingiva." [BTO:0004046, http://www.biology-online.org/dictionary/] subset: human_reference_atlas xref: BTO:0004046 xref: FMA:289360 is_a: UBERON:0003729 ! mouth mucosa relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium relationship: part_of UBERON:0003729 {source="BTO"} ! mouth mucosa relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0035968 name: bulboid corpuscle def: "A receptor in the transitional zone between mucous membrane and skin." [ISBN:9780849388118, Wikipedia:Bulboid_corpuscle] synonym: "bulboid corpuscles" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end bulbs" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end bulbs of krause" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end-bulb of krause" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end-bulbs of krause" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "krause corpuscle" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "krause's end-bulbs" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "mucocutaneous corpuscle" RELATED [ISBN:9780849388118] synonym: "mucocutaneous end-organ" RELATED [ISBN:9780849388118] synonym: "spheroidal tactile corpuscles" RELATED [Wikipedia:Bulboid_corpuscle] xref: Wikipedia:Bulboid_corpuscle is_a: UBERON:0012451 ! sensory receptor property_value: curator_notes "Some investigators are doubtful to its existence; or may be a degenerative stage of peripheral nerves[ISBN:9780849388118]" xsd:string [Term] id: UBERON:0035969 name: encapsulated tactile receptor def: "A tacile mechanoreceptor that lacks a capsule." [UBERON:cjm] synonym: "encapsulated nerve ending" EXACT [FMA:83995] xref: FMA:83995 is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor [Term] id: UBERON:0035970 name: calcar avis of the lateral ventricle def: "On the medial wall of the posterior cornu of the lateral ventricle is a longitudinal eminence, the calcar avis (hippocampus minor), which is an involution of the ventricular wall produced by the calcarine fissure. It is sometimes visible on ultrasonogram." [Wikipedia:Calcar_avis] synonym: "CalA" RELATED OMO:0003000 [DHBA:12095] synonym: "calcar" RELATED [BTO:0004691] synonym: "calcar avis" RELATED [BTO:0004691] synonym: "calcarine spur" RELATED [BTO:0004691] synonym: "ergot" RELATED [BTO:0004691] synonym: "Haller unguis" RELATED [BTO:0004691] synonym: "hippocampus minor" EXACT [BTO:0004691] synonym: "minor hippocampus" RELATED [BTO:0004691] synonym: "Morand spur" RELATED [BTO:0004691] synonym: "pes hippocampi minor" RELATED OMO:0003011 [NeuroNames:210] synonym: "unguis avis" RELATED [BTO:0004691] xref: BTO:0004691 xref: DHBA:12095 xref: FMA:83707 xref: neuronames:210 xref: SCTID:369271006 xref: Wikipedia:Calcar_avis is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002421 {source="BTO"} ! hippocampal formation [Term] id: UBERON:0035971 name: postsubiculum def: "Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture." [NLX:144245] synonym: "POST" RELATED OMO:0003000 [MBA:1037] synonym: "postsubicular cortex" RELATED [NLX:144245] xref: MBA:1037 xref: neuronames:1105 xref: NLX:144245 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0022230 {source="MBA"} ! retrohippocampal region [Term] id: UBERON:0035972 name: interanterodorsal nucleus of the thalamus def: "A group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info)." [NLX:144468] synonym: "IAD" RELATED OMO:0003000 [MBA:1113] synonym: "interanterodorsal nucleus of thalamus" RELATED [NLX:144468] synonym: "interanterodorsal nucleus of the thalamus" RELATED [NeuroNames:1273] synonym: "interanterodorsal nucleus thalamus" RELATED [NeuroNames:1273] synonym: "interanterodorsal thalamic nucleus" RELATED [NeuroNames:1273] synonym: "nucleus commissura interanterodorsalis" RELATED OMO:0003011 [NeuroNames:1273] synonym: "nucleus interanterodorsalis" RELATED OMO:0003011 [NeuroNames:1273] xref: MBA:1113 xref: neuronames:1273 xref: NLX:144468 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002788 {source="MBA"} ! anterior nuclear group [Term] id: UBERON:0035973 name: nucleus incertus def: "Distinct cell group in caudoventral regions of the pontine periventricular gray, adjacent to the ventromedial border of the caudal dorsal tegmental nucleus." [NLX:144477] synonym: "central Gray pars 0" RELATED [NLX:144477] synonym: "central Gray part alpha" RELATED [NLX:144477] synonym: "charles Watson. - 5th ed.)" RELATED [NLX:144477] synonym: "Inc" RELATED OMO:0003000 [DMBA:17084] synonym: "NI" RELATED OMO:0003000 [DHBA:146034972, MBA:604] synonym: "NI, CG0, CGalpha, CGbeta" RELATED OMO:0003000 [NLX:144477] synonym: "nucleus incertus (Streeter)" RELATED [NeuroNames:1093] xref: DHBA:146034972 xref: DMBA:17084 xref: MBA:604 xref: neuronames:1093 xref: NLX:144477 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0035974 name: anteroventral preoptic nucleus synonym: "anteroventral preoptic nuclei" RELATED OMO:0003004 [NLX:17240] synonym: "AVP" RELATED OMO:0003000 [MBA:263] xref: MBA:263 xref: neuronames:1813 xref: NLX:17240 is_a: UBERON:0007251 ! preoptic nucleus [Term] id: UBERON:0035975 name: intergeniculate leaflet of the lateral geniculate complex synonym: "IGL" RELATED OMO:0003000 [MBA:27] synonym: "intergeniculate leaflet of the lateral geniculate complex" RELATED [NeuroNames:1956] synonym: "intergeniculate leaflet, lateral geniculate complex" RELATED [NeuroNames:1956] synonym: "lateral geniculate complex, intergeniculate leaflet" RELATED [NeuroNames:1956] xref: MBA:27 xref: neuronames:1956 xref: NLX:144470 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001926 {source="NIFSTD"} ! lateral geniculate body [Term] id: UBERON:0035976 name: accessory abducens nucleus def: "A small cluster of neurons in the pontine reticular formation in some mammals, containing the majority of motoneurons innervating thenretractor bulbi muscles of the eye." [NLX:144454] synonym: "ACVI" RELATED OMO:0003000 [MBA:568] xref: MBA:568 xref: neuronames:1860 xref: NLX:144454 is_a: UBERON:0007413 ! nucleus of pontine reticular formation [Term] id: UBERON:0035977 name: bed nucleus of the accessory olfactory tract def: "A group of cells near the surface of the brain between the supraoptic nucleus and the cortical amygdalar nucleus in the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ). It is one of five subdivisions of the medial amygdalar nucleus." [NeuroNames:1179] synonym: "accessory olfactory formation" RELATED [NeuroNames:1179] synonym: "BA" RELATED OMO:0003000 [MBA:292] synonym: "bed nucleus accessory olfactory tract (Scalia-Winans)" RELATED [NeuroNames:1179] synonym: "bed nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] synonym: "nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] xref: MBA:292 xref: neuronames:1179 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002892 ! medial amygdaloid nucleus [Term] id: UBERON:0035999 name: dopaminergic cell groups def: "Collections of neurons in the central nervous system that have been demonstrated by histochemical fluorescence to contain the neurotransmitter dopamine ( Fuxe-1970 )." [NeuroNames:3138] synonym: "DA cell groups" RELATED [NeuroNames:3138] synonym: "dopaminergic cell groups" RELATED [NeuroNames:3138] synonym: "dopaminergic nuclei" RELATED [NeuroNames:3138] xref: neuronames:3138 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0036000 name: A8 dopaminergic cell group synonym: "A8 cell group" RELATED [NeuroNames:1061] synonym: "A8 dopamine cells" RELATED [NeuroNames:1061] synonym: "dopaminergic group A8" RELATED [NeuroNames:1061] synonym: "lateral midbrain reticular formation A8 group" RELATED [NeuroNames:1061] xref: neuronames:1061 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036001 name: A14 dopaminergic cell group synonym: "A14 cell group" RELATED [NeuroNames:1200] synonym: "A14 dopamine cells" RELATED [NeuroNames:1200] synonym: "cell group A14" RELATED [NeuroNames:1200] synonym: "dopaminergic group A14" RELATED [NeuroNames:1200] xref: neuronames:1200 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036002 name: A15 dopaminergic cell group synonym: "A15 cell group" RELATED [NeuroNames:1798] synonym: "dopaminergic group A15" RELATED [NeuroNames:1798] xref: neuronames:1798 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036003 name: A9 dopaminergic cell group synonym: "A9 cell group" RELATED [NeuroNames:1811] synonym: "dopaminergic group A9" RELATED [NeuroNames:1811] xref: neuronames:1811 xref: NLX:54027 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036004 name: A17 dopaminergic cell group synonym: "A17 cell group" RELATED [NeuroNames:1832] synonym: "dopaminergic group A17" RELATED [NeuroNames:1832] xref: neuronames:1832 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036005 name: A10 dopaminergic cell group synonym: "A10 cell group" RELATED [NeuroNames:1835] synonym: "dopaminergic group A10" RELATED [NeuroNames:1835] xref: neuronames:1835 xref: NLX:144071 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036006 name: A11 dopaminergic cell group synonym: "A11 cell group" RELATED [NeuroNames:1850] synonym: "A11 dopamine cells" RELATED [NeuroNames:1850] synonym: "dopaminergic group A11" RELATED [NeuroNames:1850] xref: neuronames:1850 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036007 name: A13 dopaminergic cell group def: "A group of cells that fluoresce for dopamine and are distributed in clusters that, in the primate, are ventral and medial to the mammillothalamic tract of the hypothalamus; a few extend into the reuniens nucleus of the thalamus (Felten-1983). In the mouse A13 is located ventral to the mammillothalamic tract of the thalamus in the zona incerta (adapted from Brain Info)." [NLX:91101] synonym: "A13" RELATED OMO:0003000 [MBA:796] synonym: "A13 cell group" RELATED [NeuroNames:1851] synonym: "A13 dopamine cells" RELATED [NeuroNames:1851] synonym: "dopaminergic group A13" RELATED [NeuroNames:1851] synonym: "zona incerta, dopaminergic group" RELATED [NeuroNames:1851] xref: MBA:796 xref: neuronames:1851 xref: NLX:91101 is_a: UBERON:0035999 ! dopaminergic cell groups relationship: part_of UBERON:0001907 {source="MBA"} ! zona incerta [Term] id: UBERON:0036008 name: A16 dopaminergic cell group synonym: "A16 cell group" RELATED [NeuroNames:1867] synonym: "dopaminergic group A16" RELATED [NeuroNames:1867] xref: neuronames:1867 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036009 name: A12 dopaminergic cell group synonym: "A12 cell group" RELATED [NeuroNames:1880] synonym: "A12 dopamine cells" RELATED [NeuroNames:1880] synonym: "dopaminergic group A12" RELATED [NeuroNames:1880] xref: neuronames:1880 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036010 name: Aaq dopaminergic cell group synonym: "Aaq cell group" RELATED [NeuroNames:1889] synonym: "dopaminergic group Aaq" RELATED [NeuroNames:1889] xref: neuronames:1889 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036011 name: telencephalic dopaminergic cell group synonym: "telencephalic DA cell group" RELATED [NeuroNames:1770] synonym: "telencephalic DA neurons" RELATED [NeuroNames:1770] synonym: "telencephalic dopamine cells" RELATED [NeuroNames:1770] synonym: "telencephalic dopaminergic group" RELATED [NeuroNames:1770] xref: neuronames:1770 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036012 name: nucleus of the brachium of the inferior colliculus synonym: "brachial nucleus of the inferior colliculus" RELATED [NeuroNames:1112] synonym: "BrC" RELATED OMO:0003000 [HBA:9483] synonym: "NB" RELATED OMO:0003000 [MBA:580] synonym: "nucleus brachium inferior colliculus" RELATED [NeuroNames:1112] synonym: "nucleus of the brachium of the inferior colliculus" RELATED [NeuroNames:1112] xref: HBA:9483 xref: MBA:580 xref: neuronames:1112 xref: NLX:144476 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0002314 {source="HBA"} ! midbrain tectum [Term] id: UBERON:0036013 name: intergluteal cleft def: "The line that divided the gluteal regions of the body." [https://github.com/obophenotype/uberon/issues/1216] subset: pheno_slim synonym: "anal cleft" EXACT [FMA:20234] synonym: "crena analis" EXACT OMO:0003011 [FMA:TA] synonym: "crena ani" EXACT OMO:0003011 [FMA:TA] synonym: "crena interglutealis" EXACT OMO:0003011 [FMA:TA] synonym: "intergluteal crease" EXACT [FMA:20234] synonym: "natal cleft" EXACT [FMA:20234] xref: FMA:20234 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001137 ! dorsum relationship: part_of UBERON:0002355 ! pelvic region of trunk [Term] id: UBERON:0036014 name: gluteal sulcus def: "A horizontal crease formed by the inferior aspect of the buttocks and the posterior upper leg." [https://github.com/obophenotype/uberon/issues/1216, Wikipedia:Gluteal_sulcus] comment: Children with developmental dysplasia of the hips are born with uneven gluteal folds and can be diagnosed with physical examination and sonogram subset: pheno_slim synonym: "gluteal crease" RELATED [Wikipedia:Gluteal_sulcus] synonym: "gluteal fold" EXACT [FMA:20233, Wikipedia:Gluteal_sulcus] synonym: "horizontal gluteal crease" RELATED [Wikipedia:Gluteal_sulcus] synonym: "sulcus glutealis" EXACT OMO:0003011 [FMA:TA] xref: FMA:20233 xref: SCTID:362679004 xref: Wikipedia:Gluteal_sulcus is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001137 ! dorsum relationship: part_of UBERON:0002355 ! pelvic region of trunk relationship: present_in_taxon NCBITaxon:9604 [Term] id: UBERON:0036015 name: castoreum def: "A yellowish pungent liquid that is a mixture of the castor sacs (an anal gland in the taxon Castoreum) and urine." [http://www.jstor.org/stable/2425894, UBERON:rc] comment: Uses to construct scent mounds is_a: UBERON:0000456 {source="cjm"} ! secretion of exocrine gland [Term] id: UBERON:0036016 name: honey def: "A sweet viscid material elaborated out of the nectar of flowers in the honey sac of various bees." [BTO:0000605, Wikipedia:Honey#Formation] xref: BTO:0000605 xref: MESH:D006722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Honey is_a: UBERON:0036017 ! regurgitated substance [Term] id: UBERON:0036017 name: regurgitated substance def: "A bodily fluid consisting of the contents of the digestive tract expulsed through the anterior portion of the digestive tract." [UBERON:cjm] synonym: "regurgitate" RELATED [] is_a: UBERON:0000463 ! organism substance [Term] id: UBERON:0036018 name: regurgitated pellet def: "A mass of undigested parts of a bird's food that some bird species occasionally regurgitate from their proventriculus." [Wikipedia:Pellet_(ornithology)] comment: The contents of a bird's pellet depend on its diet, but can include the exoskeletons of insects, indigestible plant matter, bones, fur, feathers, bills, claws, and teeth synonym: "casting" RELATED [] synonym: "pellet" RELATED [] is_a: UBERON:0036017 ! regurgitated substance [Term] id: UBERON:0036019 name: castor sac def: "A non-glandular region of the anal wall in which castoreum is produced." [PMID:24415179] is_a: UBERON:0008978 ! anal sac [Term] id: UBERON:0036043 name: paravermic lobule X synonym: "paravermis, flocculonodular lobe portion" RELATED [DHBA:12389] synonym: "PV-X" RELATED OMO:0003000 [HBA:4730] xref: DHBA:12389 xref: HBA:4730 is_a: UBERON:0027285 {source="cjm"} ! paravermis lobule area is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion relationship: part_of UBERON:0001063 {source="HBA"} ! flocculus [Term] id: UBERON:0036044 name: cerebellum vermis lobule VIIAf synonym: "CbVIIa1" RELATED OMO:0003000 [DHBA:12846] synonym: "lobule VIIAf/crus I (folium and superior semilunar lobule)" EXACT [DHBA:12846] synonym: "VIIAf" EXACT OMO:0003000 [HBA:4706] xref: DHBA:12846 xref: HBA:4706 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermis [Term] id: UBERON:0036063 name: quadrangular lobule xref: FMA:272300 is_a: UBERON:0004003 {source="FMA"} ! cerebellum hemisphere lobule [Term] id: UBERON:0036065 name: cerebellum vermis lobule VIIAt synonym: "CbVIIa2" RELATED OMO:0003000 [DHBA:12847] synonym: "lobule VIIAt/crus II (tuber and inferior semilunar lobule)" EXACT [DHBA:12847] synonym: "VIIAt" EXACT OMO:0003000 [HBA:4707] xref: DHBA:12847 xref: HBA:4707 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermis [Term] id: UBERON:0036066 name: inferior endocardial cushion def: "The endocardial cushion that forms on the ventral surface of the AV canal." [GOC:rl, https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Atrial_Ventricular_Septation, https://github.com/obophenotype/uberon/issues/1226] synonym: "ventral endocardial cushion" EXACT [] is_a: UBERON:0002062 ! endocardial cushion [Term] id: UBERON:0036067 name: superior endocardial cushion def: "The endocardial cushion that forms on the dorsal surface of the AV canal." [GOC:rl, https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Atrial_Ventricular_Septation, https://github.com/obophenotype/uberon/issues/1226] synonym: "dorsal endocardial cushion" EXACT [] is_a: UBERON:0002062 ! endocardial cushion [Term] id: UBERON:0036068 name: subglottis def: "The lower portion of the larynx, extending from just beneath the vocal cords down to the top of the trachea." [https://orcid.org/0000-0002-6490-7723, MP:0030000, Wikipedia:Subglottis] synonym: "infraglottic part of larynx" EXACT [FMA:55477] synonym: "subglottic larynx" EXACT [FMA:55477] synonym: "subglottic region" EXACT [MP:0030000] xref: EMAPA:37969 {source="MA:th"} xref: FMA:55477 xref: NCIT:C12280 xref: SCTID:281511009 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: part_of UBERON:0001737 ! larynx property_value: function_notes "the structures in the subglottis are implicated in the regulation of the temperature of the breath" xsd:string [Term] id: UBERON:0036069 name: tracheoesophageal fold def: "One of two longitudinal ridges that develop caudal to the pharynx and fuses to give rise to the tracheoesophageal septum." [https://web.duke.edu/anatomy/embryology/gi/gi.html, UBERON:cjm] synonym: "esophagotracheal fold" EXACT [UBERON:cjm] xref: NCIT:C34315 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000926 {source="Wikipedia:Laryngotracheal_groove"} ! mesoderm [Term] id: UBERON:0036070 name: tracheoesophageal septum def: "The tracheoesophageal septum is formed from the tracheoesophageal folds which fuse in the midline to form a structure called tracheoesophageal septum. It divides the esophagus from the trachea. It divides the foregut tube into the laryngotracheal tube ventrally and esophagus dorsally. Developmental abnormalities can lead to a tracheoesophageal fistula." [Wikipedia:Tracheoesophageal_septum] synonym: "esophagotracheal septum" EXACT [UBERON:cjm] synonym: "tracheoesophageal ridges" RELATED [Wikipedia:Tracheoesophageal_septum] xref: NCIT:C34316 xref: Wikipedia:Tracheoesophageal_septum is_a: UBERON:0003037 ! septum is_a: UBERON:0004120 ! mesoderm-derived structure relationship: transformation_of UBERON:0036069 ! tracheoesophageal fold [Term] id: UBERON:0036071 name: diaphragmaticus muscle def: "A skeletal muscle found in crocodilians that is analogous to the diaphragm of mammals." [https://github.com/obophenotype/uberon/issues/1229, PMID:22323207] synonym: "diaphragmaticus" RELATED [] is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0003831 ! respiratory system muscle [Term] id: UBERON:0036072 name: respiratory primordium epithelium xref: EHDAA2:0004070 is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009854 ! digestive tract diverticulum is_a: UBERON:0015833 ! foregut epithelium relationship: develops_from UBERON:0007690 {source="EHDAA2"} ! early pharyngeal endoderm relationship: part_of UBERON:0008947 ! respiratory primordium [Term] id: UBERON:0036073 name: respiratory primordium mesenchyme synonym: "respiratory primordium associated mesenchyme" EXACT [EHDAA2:0004071] xref: EHDAA2:0004071 is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0004873 {source="EHDAA2"} ! splanchnopleure relationship: part_of UBERON:0008947 ! respiratory primordium [Term] id: UBERON:0036074 name: vein of vestibular aqueduct def: "A vein that leaves the vestibule through an individual bone canal running parallel to the vestibular aqueduct up to the dura of the posterior side of the petrosa in the area of the endolymphatic sac. It then opens in the inferior petrosal sinus or the jugular bulb. The vein receives other branches from the bone, dura and sac." [PMID:42339] subset: human_reference_atlas synonym: "vena aqueductus vestibuli" EXACT OMO:0003011 [FMA:TA] synonym: "vestibular aqueduct vein" EXACT [FMA:52367] xref: FMA:52367 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036143 name: meningeal branch of mandibular nerve def: "The meningeal branch of the mandibular nerve (recurrent branch, nervus spinosus) is a branch of the mandibular nerve that supplies the dura mater." [Wikipedia:Meningeal_branch_of_the_mandibular_nerve] synonym: "nervus spinosus" EXACT OMO:0003011 [FMA:TA] synonym: "nervus spinosus" RELATED [Wikipedia:Meningeal_branch_of_the_mandibular_nerve] synonym: "ramus meningeus (Nervus mandibularis)" EXACT [FMA:53047] synonym: "ramus meningeus nervus mandibularis" EXACT OMO:0003011 [FMA:TA] xref: FMA:53047 xref: SCTID:280249002 xref: Wikipedia:Meningeal_branch_of_the_mandibular_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0036144 name: incisive duct def: "An infrequent rudimentary duct, or protrusion of the mucous membrane into the incisive canal, on either side of the anterior extremity of the nasal crest." [http://medical-dictionary.thefreedictionary.com/incisive+duct] comment: Taxon notes notes: In domestic mammals the Ductus incisivus is considerably better developed than in man. It is not accommodated in a Canalis incisivus, as in man, but in the Fissura palatina[NOMINA ANATOMICA VETERINARIA (2005)] synonym: "ductus incisivus" EXACT OMO:0003011 [FMA:TA] xref: FMA:77282 is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space relationship: part_of UBERON:0006672 ! incisive canal property_value: taxon_notes "horses exhibit Flehmen response but do not have an incisive duct communication between the nasal and the oral cavity because they do not breathe through their mouths, instead, the VNOs connect to the nasal passages by the nasopalatine duct" xsd:string [Term] id: UBERON:0036145 name: glymphatic system def: "Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [DOI:10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] xref: EMAPA:37872 {source="MA:th"} xref: MESH:D000077502 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001016 ! nervous system property_value: function_notes "hypothesized to be have roles such as waste clearance, distribution of compounds" xsd:string [Term] id: UBERON:0036146 name: cardiopharyngeal field def: "An region of the mesoderm that includes anterior lateral mesoderm of the first heart field plus contiguous pharyngeal mesoderm that gives rise to second-heart-field-derived regions of the heart and branchiomeric muscles." [http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1, https://orcid.org/0000-0003-3308-6245] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage [Term] id: UBERON:0036147 name: oral siphon muscle def: "A muscle that is part of an oral siphon." [http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html, https://github.com/obophenotype/uberon/issues/1265] synonym: "buccal siphon muscle" EXACT [] is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0009720 ! oral siphon [Term] id: UBERON:0036148 name: orovelar muscle is_a: UBERON:0001630 ! muscle organ relationship: never_in_taxon NCBITaxon:7776 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1264" xsd:anyURI [Term] id: UBERON:0036149 name: suprapubic skin def: "Area of skin in the hypoastric region of the abdomen." [https://github.com/obophenotype/uberon/issues/1272] synonym: "hypogastric skin" RELATED [] is_a: UBERON:0001416 ! skin of abdomen relationship: part_of UBERON:0013203 ! hypogastrium [Term] id: UBERON:0036150 name: skin appendage follicle def: "An organ subunit in the skin that gives rise to cutaneous appendage." [https://github.com/obophenotype/uberon/issues/1266, UBERON:cjm] synonym: "cutaneous appendage follicle" EXACT [] synonym: "follicle" BROAD [] synonym: "skin follicle" EXACT [] is_a: UBERON:0000063 ! organ subunit relationship: part_of UBERON:0000014 ! zone of skin [Term] id: UBERON:0036151 name: diffuse placenta def: "A placenta in which the chorionic sac meets the uterine endometrium over its entire surface. The villi of the chorion are distributed evenly throughout the surface of the chorion, and they extend into processes in the uterine endometrium." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:35497 relationship: present_in_taxon NCBITaxon:9788 property_value: structure_notes "Almost the entire surface of the allantochorion is involved in formation of the placenta" xsd:string property_value: taxon_notes "horses, pigs" xsd:string [Term] id: UBERON:0036152 name: cotyledonary placenta def: "A placenta in which the villi clumped together into circular patches called cotyledons. The fetal cotyledon meets with maternal regions called caruncles to form the placentome where maternal-fetal exchanges take place." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:9845 property_value: structure_notes "Multiple, discrete areas of attachment called cotyledons are formed by interaction of patches of allantochorion with endometrium. The fetal portions of this type of placenta are called cotyledons, the maternal contact sites (caruncles), and the cotyledon-caruncle complex a placentome" xsd:string property_value: taxon_notes "common to ungulates such as cows, deer, goat, and giraffes" xsd:string [Term] id: UBERON:0036153 name: zonary placenta def: "A placenta in which the chorionic villi have aggregated to form a broad band that circles about the center of the chorion. Such zones may be complete circles (such as those in dogs and cats) or incomplete (such as those in bears and seals). It is thought that zonary placentae form from diffuse placentae in which the villi at the ends regress, leaving only those in the center to function. At the edges of the zonary placenta is the hemophagous organ, which is green. The color is due to the degradation of hemoglobin into bilivirdin. This green organ provides iron for the developing fetus." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:33554 property_value: structure_notes "The placenta takes the form of a complete or incomplete band of tissue surrounding the fetus" xsd:string property_value: taxon_notes "characteristic of carnivores" xsd:string [Term] id: UBERON:0036154 name: discoid placenta def: "A placenta in which part of the chorion remains smooth, while the other part interacts with the endometrium to form the placenta. The maternal blood cells are in direct contact with the fetal chorion." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:314146 relationship: present_in_taxon NCBITaxon:9362 property_value: structure_notes "A single placenta is formed and is discoid in shape" xsd:string property_value: taxon_notes "seen in numerous groups -- humans, mice, insectivores, rabbits, rats, and monkeys" xsd:string [Term] id: UBERON:0036161 name: epitheliochorial placenta def: "A placenta in which all three maternal layers are retained." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:9845 property_value: taxon_notes "Horses, swine, ruminants" xsd:string [Term] id: UBERON:0036162 name: endotheliochorial placenta def: "A placenta in which the only maternal layer retained is the uterine endothelium." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:33554 property_value: taxon_notes "dogs, cats" xsd:string [Term] id: UBERON:0036163 name: hemochorial placenta def: "A placenta in which no maternal layers are retained." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:314146 property_value: taxon_notes "humans, rodents" xsd:string [Term] id: UBERON:0036164 name: ambient gyrus def: "A rostral part of the parahippocampal gyrus." [NeuroNames:2072] synonym: "AG" RELATED OMO:0003000 [DHBA:12166] synonym: "ambiens gyrus" EXACT [DHBA:12166] synonym: "gyrus ambiens" EXACT OMO:0003011 [DHBA:12166] synonym: "limen insula" RELATED [NeuroNames:2072] xref: DHBA:12166 xref: neuronames:2072 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain relationship: part_of UBERON:0034773 {source="DHBA"} ! uncus of parahippocampal gyrus property_value: terminology_notes "Some authors regard it as part of the gyrus underlying the uncus ( Ture-1999 ), others as a synonym for limen insula." xsd:string [Term] id: UBERON:0036167 name: Sattler's layer def: "Sattler's layer is layer of medium diameter blood vessels of the choroid." [Wikipedia:Sattler%27s_layer] comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. xref: Wikipedia:Sattler%27s_layer is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] id: UBERON:0036168 name: Haller's layer comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] id: UBERON:0036172 name: palmaris brevis def: "The Palmaris brevis is a thin, quadrilateral muscle, placed beneath the integument of the ulnar side of the hand. It arises by tendinous fasciculi from the transverse carpal ligament and palmar aponeurosis; the fleshy fibers are inserted into the skin on the ulnar border of the palm of the hand. The muscle is innervated by the superficial branch of the ulnar nerve, containing fibers from the eighth cervical and first thoracic nerves." [Wikipedia:Palmaris_brevis_muscle] subset: human_reference_atlas synonym: "musculus palmaris brevis" EXACT OMO:0003011 [FMA:TA, Wikipedia:Palmaris_brevis_muscle] synonym: "palmaris brevis muscle" EXACT [FMA:37381, Wikipedia:Palmaris_brevis_muscle] xref: FMA:37381 xref: SCTID:181650004 xref: Wikipedia:Palmaris_brevis_muscle is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036173 name: abductor digiti minimi of hand def: "The Abductor minimi digiti (Abductor digiti quinti) is situated on the ulnar border of the palm of the hand. It arises from the pisiform bone and from the tendon of the Flexor carpi ulnaris, and ends in a flat tendon, which divides into two slips; one is inserted into the ulnar side of the base of the first phalanx of the little finger; the other into the ulnar border of the aponeurosis of the Extensor digiti quinti proprius. In case of polydactyly it may insert to the sixth finger instead, if there is one." [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] subset: human_reference_atlas synonym: "abductor digiti minimi (hand)" RELATED [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] synonym: "abductor digiti minimi manus" RELATED [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] synonym: "abductor digiti minimi muscle of hand" EXACT [FMA:37382] synonym: "abductor digiti minimi of hand" RELATED [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] synonym: "abductor digiti quinti muscle (hand)" RELATED [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] synonym: "musculus abductor digiti minimi" EXACT OMO:0003011 [FMA:TA] xref: FMA:37382 xref: SCTID:181651000 xref: Wikipedia:Abductor_minimi_digiti_muscle_(hand) is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036174 name: flexor digiti minimi brevis of hand def: "The flexor digiti minimi brevis is a muscle in the hand that flexes the little finger. It lies in the same plane as the abductor digiti minimi, on its radial side." [Wikipedia:Flexor_digiti_minimi_brevis_(hand)] subset: human_reference_atlas synonym: "flexor brevis minimi digiti muscle (hand)" RELATED [Wikipedia:Flexor_digiti_minimi_brevis_(hand)] synonym: "flexor digiti minimi brevis muscle" RELATED [Wikipedia:Flexor_digiti_minimi_brevis_(hand)] synonym: "flexor digiti minimi brevis muscle of hand" EXACT [FMA:37383] synonym: "flexor digiti quinti brevis muscle (hand)" RELATED [Wikipedia:Flexor_digiti_minimi_brevis_(hand)] synonym: "musculus flexor digiti minimi brevis (manus)" EXACT OMO:0003011 [FMA:TA] xref: FMA:37383 xref: SCTID:181653002 xref: Wikipedia:Flexor_digiti_minimi_brevis_(hand) is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036176 name: opponens digiti minimi of hand def: "The opponens minimi digiti (opponens digiti quinti in older texts) is a muscle in the hand. It is of a triangular form, and placed immediately beneath the palmaris brevis, abductor minimi digiti, and flexor brevis minimi digiti. It arises from the convexity of the hamulus of the hamate bone, and contiguous portion of the transverse carpal ligament; it is inserted into the whole length of the metacarpal bone of the little finger, along its ulnar margin." [Wikipedia:Opponens_digiti_minimi_muscle] synonym: "musculus opponens digiti minimi (Manus)" EXACT OMO:0003011 [FMA:TA] synonym: "opponens digiti minimi" RELATED [Wikipedia:Opponens_digiti_minimi_muscle] synonym: "opponens digiti minimi (hand)" RELATED [Wikipedia:Opponens_digiti_minimi_muscle] synonym: "opponens digiti minimi muscle of hand" EXACT [FMA:37384] synonym: "opponens digiti quinti" RELATED [Wikipedia:Opponens_digiti_minimi_muscle] xref: FMA:37384 xref: SCTID:181652007 xref: Wikipedia:Opponens_digiti_minimi_muscle is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle [Term] id: UBERON:0036177 name: nucleus recessus def: "The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach." [BTO:0003662, ISSN:1505-0297] is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0036185 name: Sertoli cell barrier def: "The blood-testis barrier (abbreviated as BTB) is a physical barrier between the blood vessels and the seminiferous tubules of the animal testes. The barrier is formed by tight connections between the Sertoli cells, which are sustentacular cells (supporting cells) of the seminiferous tubules, and nourish the spermatogonia. The barrier prevents passage of cytotoxic agents (bodies or substances that are toxic to cells) into the seminiferous tubules." [Wikipedia:Blood-testis_barrier] synonym: "blood testis barrier" RELATED [Wikipedia:Blood-testis_barrier] synonym: "blood-testes barrier" RELATED [Wikipedia:Blood-testis_barrier] xref: MESH:D001814 xref: Wikipedia:Blood-testis_barrier is_a: UBERON:0006914 ! squamous epithelium is_a: UBERON:0014914 ! haemolymphatic fluid-testis barrier [Term] id: UBERON:0036186 name: fibroelastic connective tissue xref: FMA:83520 is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0011824 ! fibrous connective tissue [Term] id: UBERON:0036212 name: intertragic incisure def: "A surface structure that is the narrowed downward continuation of the conchal space bounded anteriorly by the borders of the tragus, posteriorly by theantitragus, and along its lower lateral margins and inferior boundary by the connection between the first two." [https://github.com/obophenotype/human-phenotype-ontology/issues/2274, PMID:20082456, UBERON:cjm, Wikipedia:Incisura_anterior_auris] comment: Measurement notes: The length is measured from the upper to the lower border (between tragus and antitragus) synonym: "anterior auricular groove" RELATED [Wikipedia:Incisura_anterior_auris] synonym: "auricular notch" RELATED [Wikipedia:Incisura_anterior_auris] synonym: "incisura" BROAD [https://github.com/obophenotype/human-phenotype-ontology/issues/2274] synonym: "incisura anterior auris" RELATED [Wikipedia:Incisura_anterior_auris] synonym: "incisura intertragica" EXACT OMO:0003011 [FMA:TA] synonym: "intertragal incisure" EXACT [FMA:61175] synonym: "intertragic incisure" EXACT [FMA:61175] synonym: "intertragic incisure" RELATED [Wikipedia:Incisura_anterior_auris] synonym: "intertragic notch" EXACT [FMA:61175] synonym: "sulcus auriculae anterior" RELATED [Wikipedia:Incisura_anterior_auris] xref: FMA:61175 xref: SCTID:362542005 xref: Wikipedia:Incisura_anterior_auris is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0036214 name: rectosigmoid junction def: "An anatomical junction that is between the sigmoid colon and rectum." [https://github.com/obophenotype/uberon/issues/1319, https://www.cdc.gov/cancer/npcr/pdf/abstracting/colon.pdf, NCIT:C54188] synonym: "rectosigmoid region" RELATED [NCIT:C54188] xref: NCIT:C54188 xref: SCTID:245429006 is_a: UBERON:8410024 ! intestinal junction [Term] id: UBERON:0036215 name: anatomical surface region def: "Material anatomical entity that forms the outermost boundary of an anatomical structure." [https://github.com/obophenotype/uberon/issues/1324] subset: common_anatomy xref: AAO:0010270 xref: ZFA:0005594 is_a: UBERON:0000465 ! material anatomical entity relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0036216 name: tympanic nerve def: "The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear." [Wikipedia:Tympanic_nerve] subset: human_reference_atlas synonym: "jacobson%27s nerve" RELATED [Wikipedia:Tympanic_nerve] synonym: "nerve of jacobson" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic branch" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic branch of the glossopharyngeal" RELATED [Wikipedia:Tympanic_nerve] xref: FMA:53480 xref: SCTID:280289008 xref: Wikipedia:Tympanic_nerve is_a: UBERON:0011779 ! nerve of head region relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036217 name: coelomic fluid def: "A bodily fluid that is located in the coelom." [https://github.com/obophenotype/uberon/issues/1326, PMID:10874572] xref: BTO:0001708 is_a: UBERON:0006314 ! bodily fluid property_value: function_notes "he coelomic fluid serves several functions; it acts as a hydroskeleton, it allows free movement and growth of internal organs, it serves for transport of gases, nutrients and waste products between different parts of the body, it allows storage of sperm and eggs during maturation and it acts as a reservoir for waste [Wikipedia:Coelom#Coelomic_fluid]" xsd:string [Term] id: UBERON:0036218 name: secondary prosencephalon def: "The most anterior region of the forebrain including both the telencephalon and the hypothalamus in the prosomeric model." [DOI:10.1111/dgd.12348, https://github.com/obophenotype/uberon/issues/1322] comment: may contain the optic recess region (ORR) in the new model proposed by Yamamoto et al. 2017 (see https://www.ncbi.nlm.nih.gov/pubmed/28470718) synonym: "SP" RELATED OMO:0003000 [DMBA:15567] xref: DMBA:15567 is_a: UBERON:0002616 {source="DMBA"} ! regional part of brain relationship: part_of UBERON:0001890 {source="DMBA", source="DOI:10.1111/dgd.12348"} ! forebrain [Term] id: UBERON:0036219 name: ungulate coronary band def: "A region of the pododerm above the hoof where hair growth ends." [bgee:ANN, http://www.mondofacto.com/facts/dictionary?corium+coronae, https://github.com/obophenotype/uberon/issues/1339] synonym: "corium coronae" EXACT OMO:0003011 [https://github.com/obophenotype/uberon/issues/1339] synonym: "coronary band" EXACT [] synonym: "coronary band of bovine limb" NARROW [] synonym: "coronary band of equine forelimb" NARROW [] synonym: "coronary band of hoof" NARROW [] xref: SCTID:370753009 xref: SCTID:5695009 is_a: UBERON:0015249 ! digit skin [Term] id: UBERON:0036224 name: corticobulbar and corticospinal tracts def: "The corticobulbar and corticospinal tracts combined." [https://github.com/obophenotype/uberon/issues/553] synonym: "pyramidal tract" BROAD INCONSISTENT [BIRNLEX:1464, MP:0002878, neuronames:1320] xref: Wikipedia:Pyramidal_tracts is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter [Term] id: UBERON:0036225 name: respiratory system gland def: "Any gland that is part os the respiratory system." [UBERON:cjm] is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0036242 name: post-embryonic notochord def: "A notochord that has persisted beyond the embryonic stage." [UBERON:cjm] is_a: UBERON:0002328 ! notochord relationship: never_in_taxon NCBITaxon:32524 relationship: part_of UBERON:0009953 ! post-embryonic organism relationship: present_in_taxon NCBITaxon:118072 relationship: present_in_taxon NCBITaxon:7737 relationship: present_in_taxon NCBITaxon:7746 relationship: present_in_taxon NCBITaxon:7878 relationship: present_in_taxon NCBITaxon:8292 [Term] id: UBERON:0036243 name: vaginal fluid def: "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands." [http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/] synonym: "vaginal discharge" RELATED [] synonym: "vaginal secretion" RELATED [] xref: BTO:0003084 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006314 ! bodily fluid [Term] id: UBERON:0036244 name: secretion of serous membrane def: "A transudate found in the serous sac." [FMA:20932] synonym: "serous fluid" BROAD [FMA:20932] synonym: "serous sac fluid" EXACT [] xref: FMA:20932 is_a: UBERON:0007779 ! transudate [Term] id: UBERON:0036245 name: parenchyma of mammary gland def: "Parenchymal tissue that consists of the alveoli, grape-like clusters where milk is stored, and branching ducts, which are tubular canals carrying gladular secretions." [http://www.newworldencyclopedia.org/entry/Mammary_gland, https://github.com/obophenotype/uberon/issues/1349, https://orcid.org/0000-0003-3308-6245] synonym: "lactiferous gland parenchyma" EXACT [] synonym: "mammary gland parenchyma" EXACT [] synonym: "parenchyma of lactiferous gland" EXACT [] is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0036246 name: incudostapedial joint def: "The small synovial joint connecting the inclus and the stapes, located between the lenticular process on the long crus of the incus and the head of the stapes." [http://medical-dictionary.thefreedictionary.com/incudostapedial+joint, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2305] synonym: "articulatio incudostapedialis" EXACT OMO:0003011 [FMA:TA] synonym: "incudostapedial articulation" EXACT [FMA:60065] xref: FMA:60065 is_a: UBERON:0036248 ! joint of auditory ossicle [Term] id: UBERON:0036247 name: incudomallear joint def: "The saddle-shaped synovial joint connecting the incus and the malleus." [http://medical-dictionary.thefreedictionary.com/incudomallear+joint, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2305] synonym: "articulatio incudomallearis" EXACT OMO:0003011 [FMA:TA] synonym: "incudomallear articulation" EXACT [FMA:60064] synonym: "incudomalleolar joint" EXACT [FMA:60064] xref: FMA:60064 is_a: UBERON:0036248 ! joint of auditory ossicle [Term] id: UBERON:0036248 name: joint of auditory ossicle def: "Any synovial joint that connects auditory ossicles." [UBERON:cjm] synonym: "auditory ossicle joint" EXACT [] synonym: "auditory ossicles joint" EXACT [FMA:60063] synonym: "joint of auditory ossicles" EXACT [FMA:60063] xref: FMA:60063 is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0036249 name: zona pectinata of basilar membrane of cochlea def: "The acellular membrane that forms the outer two thirds of the basilar membrane of the conchlea." [http://medical-dictionary.thefreedictionary.com/zona+pectinata, https://github.com/obophenotype/uberon/issues/1357] synonym: "pectinate zone" BROAD [] synonym: "pectinate zone of basilar membrane" EXACT [] synonym: "pectinate zone of organ of corti" EXACT [] synonym: "zona pectinata" BROAD [] xref: BIRNLEX:2529 xref: FMA:75710 xref: SCTID:368962003 xref: UMLS:C1184863 is_a: UBERON:0036250 ! zone of basilar membrane of cochlea [Term] id: UBERON:0036250 name: zone of basilar membrane of cochlea synonym: "zone of organ of corti" RELATED [] xref: SCTID:361065006 is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0002226 ! basilar membrane of cochlea [Term] id: UBERON:0036252 name: interdigital space def: "The space between the digits of the hand or foot." [NCIT:C106201] xref: NCIT:C106201 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0036253 name: orifice of skull synonym: "cranial orifice" EXACT [FMA:53133] synonym: "skull orifice" EXACT [FMA:53133] xref: FMA:53133 is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0036254 name: piriform aperture def: "A pear-shaped bony inlet comprising the most anterior and narrowest bony portion of the nasal airway." [MGI:anna, PMID:17082934, Wikipedia:Anterior_nasal_aperture] synonym: "apertura piriformis" EXACT OMO:0003011 [FMA:TA] synonym: "apertura piriformis" RELATED [Wikipedia:Anterior_nasal_aperture] synonym: "piriform aperture" RELATED [Wikipedia:Anterior_nasal_aperture] synonym: "pyriform aperture" RELATED [Wikipedia:Anterior_nasal_aperture] xref: FMA:53137 xref: Wikipedia:Anterior_nasal_aperture is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:0036255 name: interoceptive system def: "The system that is responsible for sensing the internal state of the body." [https://github.com/obophenotype/uberon/issues/1385, Wikipedia:Interoception] xref: Wikipedia:Interoception is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0036256 name: iliac lymph sac def: "An embryonic lymph sac that forms near the junction of the iliac veins with the posterior cardinal veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] xref: NCIT:C34191 is_a: UBERON:0034953 {source="NCIT"} ! embryonic lymph sac [Term] id: UBERON:0036259 name: cardial lymph propulsor def: "A lymphatic propulsor that lies tightly against the truncus arteriosus, the major outflow tract of the amphibian heart." [http://jap.physiology.org/content/115/3/297, PMCID:PMC1233883] is_a: UBERON:0015229 ! accessory circulatory organ [Term] id: UBERON:0036260 name: embryonic cisterna chyli def: "An embryonic lymph sac that is dorsal to the retroperitoneal lymph sac, at the level of the adrenal glands." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] synonym: "future upper portion of the cisterna chyli" RELATED [] xref: EHDAA2:0000253 is_a: UBERON:0034953 {source="cjm"} ! embryonic lymph sac [Term] id: UBERON:0036261 name: accessory lymph sac def: "An extracoelomic lateral abdominal space that accumulates body fluid." [PMID:3958676] is_a: UBERON:0007499 ! epithelial sac relationship: part_of UBERON:0000916 ! abdomen relationship: present_in_taxon NCBITaxon:65997 [Term] id: UBERON:0036262 name: uterine ligament def: "Any of the eight ligaments pertaining to the uterus including the anterior, posterior, lateral, sacro-uterine and round ligaments." [NCIT:C61360] xref: NCIT:C61360 xref: SCTID:272668006 is_a: UBERON:0000211 ! ligament is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000002 ! uterine cervix [Term] id: UBERON:0036263 name: supraglottic part of larynx def: "The upper part of the larynx, including the epiglottis; the area above the vocal cords." [NCIT:C12279] synonym: "supraglottic larynx" EXACT [FMA:55476] synonym: "supraglottis" EXACT [NCIT:C12279] xref: FMA:55476 xref: NCIT:C12279 xref: SCTID:361953009 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0036264 name: zygomaticotemporal nerve def: "The zygomaticotemporal nerve or zygomaticotemporal branch (temporal branch) is derived from the maxillary branch of the trigeminal nerve (Cranial nerve V). It runs along the lateral wall of the orbit in a groove in the zygomatic bone, receives a branch of communication from the lacrimal, and passes through zygomaticotemporal foramen in the zygomatic bone to enter the temporal fossa. It ascends between the bone, and substance of the Temporalis muscle, pierces the temporal fascia about 2.5 cm. above the zygomatic arch, and is distributed to the skin of the side of the forehead, and communicates with the facial nerve and with the auriculotemporal branch of the mandibular nerve. As it pierces the temporal fascia, it gives off a slender twig, which runs between the two layers of the fascia to the lateral angle of the orbit." [Wikipedia:Zygomaticotemporal_nerve] synonym: "ramus zygomaticotemporalis (Nervus zygomaticus)" EXACT [FMA:52972] synonym: "ramus zygomaticotemporalis nervus zygomatici" EXACT OMO:0003011 [FMA:TA] synonym: "zygomaticotemporal" RELATED [Wikipedia:Zygomaticotemporal_nerve] synonym: "zygomaticotemporal branch" RELATED [Wikipedia:Zygomaticotemporal_nerve] synonym: "zygomaticotemporal branch of zygomatic nerve" EXACT [FMA:52972] xref: FMA:52972 xref: SCTID:280243001 xref: Wikipedia:Zygomaticotemporal_nerve is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0036265 name: conjunctival papilla synonym: "conjunctival papillae" EXACT OMO:0003004 [] xref: SCTID:280681004 is_a: UBERON:2001995 ! papilla relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0036266 name: pars interarticularis of vertebra def: "The part of vertebra located between the inferior and superior articular processes of the facet joint." [Wikipedia:Pars_interarticularis] synonym: "pars interarticularis" EXACT [] xref: SCTID:705098005 xref: Wikipedia:Pars_interarticularis is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0036267 name: vulval vein xref: SCTID:279975006 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0036268 name: pelvic vein xref: SCTID:13152008 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0036269 name: penis blood vessel synonym: "penis vasculature" RELATED [] synonym: "vasculature of penis" RELATED [EMAPA:30807] xref: EMAPA:30807 xref: SCTID:363673006 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0036270 name: epihyoideum def: "An elastic ligament lying between the lateral pharyngeal muscles and the thyroglossus muscle." [PMCID:PMC1570911] is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0036271 name: omphalopleure def: "A fetal membrane, part of the yolk sac, that appears during some placentation processes." [https://github.com/obophenotype/uberon/issues/1426, https://orcid.org/0000-0003-3308-6245, PMID:10761048, PMID:29416852] is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0036272 name: bilaminar omphalopleure def: "A non-vascular omphalopleure that supports uptake and metabolism of nutrients." [https://github.com/obophenotype/uberon/issues/1426, https://orcid.org/0000-0003-3308-6245, PMID:10761048, PMID:29416852] synonym: "non-vascular bilaminar omphalopleure" EXACT [] is_a: UBERON:0036271 ! omphalopleure [Term] id: UBERON:0036273 name: trilaminar omphalopleure def: "A vascular omphalopleure that is important for respiration." [https://github.com/obophenotype/uberon/issues/1426, https://orcid.org/0000-0003-3308-6245, PMID:10761048, PMID:29416852] synonym: "choriovitelline membrane" EXACT [PMID:10761048] synonym: "vascular TOM" EXACT [PMID:10761048] synonym: "vascular trilaminar omphalopleure" EXACT [PMID:10761048] is_a: UBERON:0036271 ! omphalopleure [Term] id: UBERON:0036274 name: tonsillar pillar def: "The anterior and posterior borders of the tonsillar fossa. They are composed of muscle tissue." [NCIT:C12236] comment: Consider merge with palatopharyngeus xref: NCIT:C12236 is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0002372 {source="NCIT"} ! tonsil [Term] id: UBERON:0036285 name: wall of left ventricle def: "Wall of ventricle which is continuous with the wall of aorta." [FMA:9556] synonym: "left ventricular wall" EXACT [FMA:9556] xref: FMA:9556 is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall relationship: part_of UBERON:0002084 {source="FMA"} ! heart left ventricle [Term] id: UBERON:0036286 name: wall of right ventricle def: "Wall of ventricle which is continuous with the wall of pulmonary trunk." [FMA:9533] synonym: "right ventricular wall" EXACT [FMA:9533] xref: FMA:9533 is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall relationship: part_of UBERON:0002080 {source="FMA"} ! heart right ventricle [Term] id: UBERON:0036288 name: anterior wall of left ventricle xref: FMA:9560 is_a: UBERON:0036285 ! wall of left ventricle relationship: part_of UBERON:0036285 {source="FMA"} ! wall of left ventricle [Term] id: UBERON:0036289 name: anterior wall of right ventricle def: "Region of wall of right ventricle which is continuous with the lateral and septal walls of right ventricle." [FMA:9553] xref: FMA:9553 is_a: UBERON:0036286 ! wall of right ventricle [Term] id: UBERON:0036290 name: myocardium of anterior wall of left ventricle xref: FMA:87177 is_a: UBERON:0006566 ! left ventricle myocardium relationship: part_of UBERON:0036288 ! anterior wall of left ventricle [Term] id: UBERON:0036291 name: myocardium of anterior wall of right ventricle xref: FMA:260877 is_a: UBERON:0006567 ! right ventricle myocardium relationship: part_of UBERON:0036289 ! anterior wall of right ventricle [Term] id: UBERON:0036292 name: adnexa of uterus def: "The fallopian tubes and ovaries." [Wikipedia:Adnexa_of_uterus] synonym: "adnexa uteri" RELATED [Wikipedia:Adnexa_of_uterus] synonym: "uterine adnexa" EXACT [FMA:265256] xref: FMA:265256 xref: SCTID:361373008 xref: Wikipedia:Adnexa_of_uterus is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0036293 name: oral frenulum def: "A small fold of mucous membrane in the mouth, connecting either the tongue or the lip to the mouth mucosa." [https://github.com/obophenotype/human-phenotype-ontology/issues/3336, UBERON:cjm] synonym: "frenulum" BROAD [] synonym: "oral frenula" EXACT OMO:0003004 [HP:0000190] synonym: "oral frenulum" EXACT [HP:0000190] synonym: "oral frenum" RELATED [] xref: SCTID:303771008 is_a: UBERON:0003729 ! mouth mucosa [Term] id: UBERON:0036294 name: mucosa of lip def: "A mucosa that is part of a lip region [Automatically generated definition]." [OBOL:automatic] synonym: "labial mucosa" EXACT [UBERON:cjm] xref: NCIT:C12226 is_a: UBERON:0003729 ! mouth mucosa relationship: part_of UBERON:0001833 ! lip [Term] id: UBERON:0036295 name: renal pelvis/ureter def: "The upper tract of the renal system. The renal pelvis is the large cavity in the middle of each kidney. Urine drains from each kidney through a long tube called the ureter, into the bladder, where it is stored until it is passed from the body through the urethra." [NCIT:C54419] subset: human_reference_atlas synonym: "renal pelvis and ureter" EXACT [] synonym: "renal pelvis plus ureter" EXACT [] xref: NCIT:C54419 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0011143 {source="NCIT"} ! upper urinary tract relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036300 name: tributary of central retinal vein subset: human_reference_atlas synonym: "central retinal venous tributary" EXACT [FMA:51892] xref: FMA:51892 xref: SCTID:731368004 is_a: UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036301 name: vasculature of spleen xref: FMA:225251 xref: SCTID:297287005 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 {source="FMA"} ! vasculature of organ relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0036302 name: vasculature of central nervous system plus retina is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0036303 name: vasculature of central nervous system xref: FMA:259905 is_a: UBERON:0036302 ! vasculature of central nervous system plus retina relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0036304 name: anatomical border def: "An anatomical structure that is located along the line dividing two regions of an anatomical structure." [UBERON:cjm] subset: common_anatomy is_a: UBERON:0000061 ! anatomical structure relationship: present_in_taxon NCBITaxon:33090 relationship: present_in_taxon NCBITaxon:33208 relationship: present_in_taxon NCBITaxon:4751 [Term] id: UBERON:0036328 name: wall of coronary artery synonym: "coronary arterial wall" EXACT [FMA:14179] xref: FMA:14179 is_a: UBERON:0000415 {source="FMA"} ! artery wall is_a: UBERON:0037144 ! wall of heart relationship: part_of UBERON:0001621 {source="FMA"} ! coronary artery [Term] id: UBERON:0036337 name: wall of appendix synonym: "appendix wall" EXACT [FMA:14621] synonym: "wall of vermiform appendix" EXACT [FMA:14621] xref: FMA:14621 is_a: UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001154 {source="FMA"} ! vermiform appendix relationship: part_of UBERON:0001169 {source="FMA"} ! wall of large intestine [Term] id: UBERON:0036343 name: wall of gallbladder synonym: "gallbladder wall" EXACT [FMA:14657] xref: FMA:14657 is_a: UBERON:0003697 ! abdominal wall relationship: part_of UBERON:0002110 {source="FMA"} ! gallbladder [Term] id: UBERON:0036351 name: wall of brachiocephalic artery synonym: "brachiocephalic arterial wall" EXACT [FMA:15089] xref: FMA:15089 is_a: UBERON:0000415 {source="FMA"} ! artery wall relationship: part_of UBERON:0001529 {source="FMA"} ! brachiocephalic artery [Term] id: UBERON:0036352 name: wall of subclavian artery synonym: "subclavian arterial wall" EXACT [FMA:15090] xref: FMA:15090 is_a: UBERON:0000415 {source="FMA"} ! artery wall relationship: part_of UBERON:0001533 {source="FMA"} ! subclavian artery [Term] id: UBERON:0036362 name: wall of anal canal synonym: "anal canal wall" EXACT [FMA:15704] xref: FMA:15704 is_a: UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0000159 {source="FMA"} ! anal canal [Term] id: UBERON:0036375 name: wall of right ureter synonym: "right ureteral wall" EXACT [FMA:15889] xref: FMA:15889 is_a: UBERON:0009916 {source="FMA"} ! wall of ureter relationship: part_of UBERON:0001222 {source="FMA"} ! right ureter [Term] id: UBERON:0036376 name: wall of left ureter subset: human_reference_atlas synonym: "left ureteral wall" EXACT [FMA:15890] xref: FMA:15890 is_a: UBERON:0009916 {source="FMA"} ! wall of ureter relationship: part_of UBERON:0001223 {source="FMA"} ! left ureter relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0036422 name: wall of pulmonary artery synonym: "pulmonary arterial wall" EXACT [FMA:18211] xref: FMA:18211 is_a: UBERON:0000415 {source="FMA"} ! artery wall relationship: part_of UBERON:0002012 {source="FMA"} ! pulmonary artery [Term] id: UBERON:0036441 name: wall of fallopian tube synonym: "uterine tube wall" EXACT [FMA:18303] synonym: "wall of oviduct" EXACT [FMA:18303] synonym: "wall of uterine tube" EXACT [] xref: FMA:18303 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube [Term] id: UBERON:0036521 name: wall of urethra synonym: "urethral wall" EXACT [FMA:19779] xref: FMA:19779 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall relationship: part_of UBERON:0000057 {source="FMA"} ! urethra [Term] id: UBERON:0036523 name: wall of vagina synonym: "vaginal wall" EXACT [FMA:19971] xref: FMA:19971 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000996 {source="FMA"} ! vagina [Term] id: UBERON:0036553 name: wall of synovial tendon sheath xref: FMA:231590 is_a: UBERON:0000042 {source="FMA"} ! serous membrane is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0000304 {source="FMA"} ! tendon sheath [Term] id: UBERON:0036654 name: wall of lateral ventricle xref: FMA:242772 is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002285 {source="FMA"} ! telencephalic ventricle [Term] id: UBERON:0036655 name: wall of cerebral aqueduct xref: FMA:242774 is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002289 {source="FMA"} ! midbrain cerebral aqueduct [Term] id: UBERON:0036656 name: wall of third ventricle xref: FMA:242776 is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002286 {source="FMA"} ! third ventricle [Term] id: UBERON:0036657 name: wall of fourth ventricle xref: FMA:242778 is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002422 {source="FMA"} ! fourth ventricle [Term] id: UBERON:0036658 name: wall of central canal of spinal cord synonym: "wall of central canal" EXACT [FMA:242780] xref: FMA:242780 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system relationship: part_of UBERON:0002291 {source="FMA"} ! central canal of spinal cord [Term] id: UBERON:0036661 name: wall of ventricular system of brain xref: FMA:242841 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system relationship: part_of UBERON:0005282 {source="FMA"} ! ventricular system of brain [Term] id: UBERON:0036925 name: wall of eyeball synonym: "eyeball wall" EXACT [FMA:58098] xref: FMA:58098 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye [Term] id: UBERON:0036990 name: wall of pharyngotympanic tube synonym: "pharyngotympanic tube wall" EXACT [FMA:60069] xref: FMA:60069 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall relationship: part_of UBERON:0002393 {source="FMA"} ! pharyngotympanic tube [Term] id: UBERON:0037089 name: wall of orbit synonym: "orbit wall" EXACT [FMA:63144] xref: FMA:63144 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: part_of UBERON:0001697 {source="FMA"} ! orbit of skull [Term] id: UBERON:0037094 name: wall of common carotid artery synonym: "common carotid arterial wall" EXACT [FMA:66284] xref: FMA:66284 is_a: UBERON:0000415 {source="FMA"} ! artery wall relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches [Term] id: UBERON:0037144 name: wall of heart def: "Wall of organ which has as its parts the endocardium, myocardium , epicardium, and the cardiac septum, surrounded by the pericardial sac proper and is continuous with the walls of the systemic and pulmonary arterial and venous trees." [FMA:7274] synonym: "cardiac wall" EXACT [FMA:7274] xref: FMA:7274 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall relationship: part_of UBERON:0000948 {source="FMA"} ! heart [Term] id: UBERON:0037191 name: wall of membranous labyrinth synonym: "membranous labyrinth wall" EXACT [FMA:79837] xref: FMA:79837 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth [Term] id: UBERON:0037237 name: wall of lacrimal duct synonym: "lacrimal ductal wall" EXACT [FMA:85375] xref: FMA:85375 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system [Term] id: UBERON:0037447 name: wall of male urethra synonym: "male urethral wall" EXACT [FMA:19676] xref: FMA:19676 is_a: UBERON:0036521 {source="FMA"} ! wall of urethra relationship: part_of UBERON:0001333 {source="FMA"} ! male urethra [Term] id: UBERON:0037455 name: wall of female urethra synonym: "female urethral wall" EXACT [FMA:19780] xref: FMA:19780 is_a: UBERON:0036521 {source="FMA"} ! wall of urethra relationship: part_of UBERON:0001334 {source="FMA"} ! female urethra [Term] id: UBERON:0037458 name: hair of neck synonym: "neck hair" EXACT [FMA:54242] xref: FMA:54242 is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0037459 name: hair of limb synonym: "limb hair" EXACT [FMA:54243] xref: FMA:54243 is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0037461 name: primary hair def: "Very thin, soft, usually unpigmented, downy hair that is sometimes found on the body of a fetal or new-born human." [https://en.wikipedia.org/wiki/Lanugo] comment: It is replaced by hair covering the same surfaces, which is called vellus hair. synonym: "downy hair" EXACT [FMA:70667] synonym: "lanugo" EXACT OMO:0003011 [FMA:TA] xref: FMA:70667 is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0037462 name: vellus hair def: "Short, thin, slight-colored, and barely noticeable hair that develops on most of a person's body during childhood." [https://en.wikipedia.org/wiki/Vellus_hair] comment: Vellus hair is differentiated from the more visible terminal or androgenic hair, which develops only during and after puberty, usually to a greater extent on men than it does on women. synonym: "peach fuzz" RELATED [https://en.wikipedia.org/wiki/Vellus_hair] xref: FMA:70668 is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0037463 name: terminal hair def: "Thick and long hair, as compared with vellus hair growing elsewhere." [https://en.wikipedia.org/wiki/Terminal_hair] xref: FMA:70669 is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0037464 name: androgenic hair def: "The terminal hair that develops on the human body during and after puberty. It is differentiated from the head hair and less visible vellus hair, which is much finer and lighter in color." [https://orcid.org/0000-0002-2825-0621] comment: The growth of androgenic hair is related to the level of androgens (often referred to as male hormones) and the density of androgen receptors in the dermal papillae. Both must reach a threshold for the proliferation of hair follicle cells synonym: "body hair" RELATED [https://orcid.org/0000-0002-2825-0621] is_a: UBERON:0037463 ! terminal hair [Term] id: UBERON:0037465 name: catagen hair comment: TODO: axiomatize using GO xref: FMA:70717 is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0037466 name: telogen hair comment: TODO: axiomatize using GO xref: FMA:70718 is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0037467 name: anagen hair comment: TODO: axiomatize using GO xref: FMA:70716 is_a: UBERON:0001037 {source="FMA"} ! strand of hair [Term] id: UBERON:0037468 name: waist def: "The part of the human abdomen below the ribs and above the hips, often narrower than the areas above and below." [https://en.wikipedia.org/w/index.php?title=Waist&oldid=987321825, https://orcid.org/0000-0002-2825-0621] xref: FMA:228775 is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk relationship: part_of UBERON:0000916 {source="https://orcid.org/0000-0002-2825-0621"} ! abdomen [Term] id: UBERON:0037480 name: supramammary lymph node synonym: "supramammary node" EXACT [FMA:12785] xref: FMA:12785 is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0037494 name: paracardial gastric lymph node def: "Gastric lymph node located around the cardia of stomach." [FMA:12803] synonym: "aJCC level 16" EXACT [FMA:12803] synonym: "lymph node ring of cardia of stomach" EXACT [FMA:12803] synonym: "paracardial gastric node" EXACT [FMA:12803] synonym: "paracardial lymph node" EXACT [FMA:12803] xref: FMA:12803 is_a: UBERON:0015863 {source="FMA"} ! gastric lymph node [Term] id: UBERON:0037500 name: subscapular axillary lymph node def: "An axillary lymph node that is placed along the lower margin of the posterior wall of the axilla in the course of the subscapular artery." [Wikipedia:Subscapular_axillary_lymph_nodes] synonym: "nodus lymphaticus subscapularis axillae" EXACT [FMA:14187] synonym: "posterior axillary node" EXACT [FMA:14187] synonym: "subcapsular node" EXACT [FMA:14187] xref: FMA:14187 is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node [Term] id: UBERON:0037501 name: pectoral axillary lymph node def: "An axiallary lymph node along the lower border of the Pectoralis minor, in relation with the lateral thoracic artery. Their afferents drain the skin and muscles of the anterior and lateral thoracic walls, and the central and lateral parts of the mamma; their efferents pass partly to the central and partly to the subclavicular groups of axillary glands." [Wikipedia:Pectoral_axillary_lymph_nodes] synonym: "anterior axillary lymph node" EXACT [FMA:14188, Wikipedia:Pectoral_axillary_lymph_nodes] synonym: "nodus lymphaticus pectoralis axillae" EXACT [FMA:14188] synonym: "pectoral lymph node" EXACT [FMA:14188] xref: FMA:14188 is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node [Term] id: UBERON:0037502 name: central axillary lymph node def: "An axillary lymph node that is imbedded in the adipose tissue near the base of the axilla." [Wikipedia:Central_lymph_nodes] synonym: "central node" EXACT [FMA:14189] synonym: "nodus lymphaticus centralis axillae" EXACT [FMA:14189] xref: FMA:14189 is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node [Term] id: UBERON:0037503 name: apical axillary lymph node def: "An axillary lymph node that is situated partly posterior to the upper portion of the Pectoralis minor and partly above the upper border of this muscle." [Wikipedia:Apical_lymph_nodes] synonym: "nodus lymphaticus apicalis axillae" EXACT [FMA:14190] xref: FMA:14190 is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node [Term] id: UBERON:0037514 name: intermediate mesenteric lymph node synonym: "central mesenteric lymph node" EXACT [FMA:16609] synonym: "central superior mesenteric lymph node" EXACT [FMA:16609] synonym: "intermediate lymph node of small intestine" EXACT [FMA:16609] synonym: "intermediate mesenteric node" EXACT [FMA:16609] xref: FMA:16609 is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0037515 name: juxta-arterial mesenteric lymph node synonym: "juxta-arterial mesenteric node" EXACT [FMA:16610] xref: FMA:16610 is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0037518 name: epicolic lymph node synonym: "epicolic node" EXACT [FMA:16613] xref: FMA:16613 is_a: UBERON:0039168 {source="FMA"} ! colic lymph node [Term] id: UBERON:0037521 name: preterminal colic lymph node synonym: "preterminal colic node" EXACT [FMA:16616] xref: FMA:16616 is_a: UBERON:0039168 {source="FMA"} ! colic lymph node [Term] id: UBERON:0037522 name: ileal lymph node synonym: "ileal mesentary lymph node" EXACT [FMA:16617] synonym: "ileal node" EXACT [FMA:16617] xref: FMA:16617 is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0037527 name: superior pancreaticoduodenal lymph node synonym: "superior pancreaticoduodenal node" EXACT [FMA:16624] xref: FMA:16624 is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node [Term] id: UBERON:0037528 name: inferior pancreaticoduodenal lymph node synonym: "inferior pancreaticoduodenal node" EXACT [FMA:16625] xref: FMA:16625 is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node [Term] id: UBERON:0037530 name: inferior pancreatic lymph node def: "Pancreaticosplenioc lymph node located along the inferior margin of pancreas." [FMA:16628] synonym: "inferior pancreatic node" EXACT [FMA:16628] synonym: "inferior pancreatiosplenic lymph node" EXACT [FMA:16628] synonym: "jPS 18 node" EXACT [FMA:16628] synonym: "jPS no. 18 node" EXACT [FMA:16628] synonym: "no. 18 pancreatic lymph node" EXACT [FMA:16628] synonym: "no. 18 pancreaticoduodenal lymph node" EXACT [FMA:16628] xref: FMA:16628 is_a: UBERON:0002527 {source="FMA"} ! pancreatic lymph node [Term] id: UBERON:0037531 name: intestinal lymph node synonym: "intestinal node" EXACT [FMA:16629] synonym: "visceral lumbar lymph node" EXACT [FMA:16629] xref: FMA:16629 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0037532 name: medial common iliac lymph node synonym: "medial common iliac node" EXACT [FMA:16641] xref: FMA:16641 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node is_a: UBERON:8470001 ! sublumbar lymph node [Term] id: UBERON:0037533 name: intermediate common iliac lymph node synonym: "intermediate common iliac node" EXACT [FMA:16642] xref: FMA:16642 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037534 name: lateral common iliac lymph node synonym: "lateral common iliac node" EXACT [FMA:16643] xref: FMA:16643 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037535 name: subaortic common iliac lymph node synonym: "subaortic common iliac node" EXACT [FMA:16644] synonym: "subaortic lymph node" EXACT [FMA:16644] xref: FMA:16644 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037536 name: promontory lymph node synonym: "promontory node" EXACT [FMA:16645] xref: FMA:16645 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037538 name: medial external iliac lymph node synonym: "medial external iliac node" EXACT [FMA:16647] xref: FMA:16647 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037539 name: intermediate external iliac lymph node synonym: "intermediate external iliac node" EXACT [FMA:16648] xref: FMA:16648 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037540 name: lateral external iliac lymph node synonym: "lateral external iliac node" EXACT [FMA:16649] xref: FMA:16649 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037541 name: interiliac lymph node synonym: "interiliac node" EXACT [FMA:16651] xref: FMA:16651 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037548 name: superior gluteal lymph node synonym: "superior gluteal node" EXACT [FMA:16658] xref: FMA:16658 is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node [Term] id: UBERON:0037549 name: inferior gluteal lymph node synonym: "inferior gluteal node" EXACT [FMA:16659] xref: FMA:16659 is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node [Term] id: UBERON:0037559 name: anorectal lymph node xref: FMA:16669 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0037560 name: superficial axillary lymph node synonym: "axillary node" BROAD [FMA:12771] xref: FMA:12771 is_a: UBERON:0001097 {source="FMA"} ! axillary lymph node [Term] id: UBERON:0037566 name: diaphragmatic lymph node synonym: "diaphragmatic node" EXACT [FMA:12773] xref: FMA:12773 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0037580 name: left gastric lymph node def: "Gastric lymph node located along the lesser curvature of stomach." [FMA:12797] synonym: "aJCC level 17L node" EXACT [FMA:12797] synonym: "left gastric node" EXACT [FMA:12797] xref: FMA:12797 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0015863 ! gastric lymph node [Term] id: UBERON:0037590 name: lateral axillary lymph node synonym: "brachial axillary node" EXACT [FMA:14186] synonym: "humeral node" EXACT [FMA:14186] synonym: "nodus lymphaticus brachialis axillae" EXACT [FMA:14186] xref: FMA:14186 is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node [Term] id: UBERON:0037601 name: left parietal lumbar lymph node synonym: "left parietal lumbar node" EXACT [FMA:16602] xref: FMA:16602 is_a: UBERON:0002526 {source="FMA"} ! lumbar lymph node is_a: UBERON:0015212 ! lateral structure [Term] id: UBERON:0037614 name: appendicular lymph node synonym: "appendicular node" EXACT [FMA:16620] xref: FMA:16620 is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0037615 name: pararectal lymph node synonym: "pararectal node" EXACT [FMA:16621] synonym: "perirectal lymph node" EXACT [FMA:16621] synonym: "rectal lymph node" EXACT [FMA:16621] xref: FMA:16621 is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0037722 name: right retropharyngeal lymph node xref: FMA:224626 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0015869 ! retropharyngeal lymph node [Term] id: UBERON:0037723 name: left retropharyngeal lymph node xref: FMA:224628 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0015869 ! retropharyngeal lymph node [Term] id: UBERON:0037763 name: lateral superior deep cervical lymph node xref: FMA:232351 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037764 name: anterior superior deep cervical lymph node xref: FMA:232355 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037765 name: lateral inferior deep cervical lymph node xref: FMA:232358 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037766 name: anterior inferior deep cervical lymph node xref: FMA:232361 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037787 name: right occipital lymph node xref: FMA:232552 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035204 ! occipital lymph node [Term] id: UBERON:0037788 name: left occipital lymph node xref: FMA:232554 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035204 ! occipital lymph node [Term] id: UBERON:0037789 name: right apical axillary lymph node xref: FMA:232558 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037503 ! apical axillary lymph node [Term] id: UBERON:0037790 name: left apical axillary lymph node xref: FMA:232560 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037503 ! apical axillary lymph node [Term] id: UBERON:0037793 name: right subscapular axillary lymph node xref: FMA:232566 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037500 ! subscapular axillary lymph node [Term] id: UBERON:0037794 name: left subscapular axillary lymph node xref: FMA:232568 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037500 ! subscapular axillary lymph node [Term] id: UBERON:0037795 name: right pectoral axillary lymph node xref: FMA:232570 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037501 ! pectoral axillary lymph node [Term] id: UBERON:0037796 name: left pectoral axillary lymph node xref: FMA:232572 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037501 ! pectoral axillary lymph node [Term] id: UBERON:0037797 name: right central axillary lymph node xref: FMA:232574 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037502 ! central axillary lymph node [Term] id: UBERON:0037798 name: left central axillary lymph node xref: FMA:232576 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037502 ! central axillary lymph node [Term] id: UBERON:0037865 name: jugular lymph node xref: FMA:232854 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0037995 name: supramandibular lymph node xref: FMA:234376 is_a: UBERON:0015870 {source="FMA"} ! lymph node of head [Term] id: UBERON:0037998 name: external jugular lymph node xref: FMA:234382 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0038001 name: sternal lymph node xref: FMA:234388 is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0038002 name: upper intercostal lymph node xref: FMA:234390 is_a: UBERON:0012236 {source="FMA"} ! intercostal lymph node [Term] id: UBERON:0038003 name: lower intercostal lymph node xref: FMA:234392 is_a: UBERON:0012236 {source="FMA"} ! intercostal lymph node [Term] id: UBERON:0038037 name: subclavian lymph node xref: FMA:234498 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0038048 name: antebrachial lymph node xref: FMA:234527 is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038053 name: cardiophrenic angle lymph node synonym: "cardiophrenic angle node" EXACT [FMA:265353] xref: FMA:265353 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0038054 name: retrocrural lymph node synonym: "retrocrural node" EXACT [FMA:265356] xref: FMA:265356 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0038093 name: jejunal lymph node synonym: "jejunal mesentary lymph node" EXACT [FMA:276784] xref: FMA:276784 is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0038094 name: inferior rectal lymph node xref: FMA:276796 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0038124 name: medial diaphragmatic lymph node synonym: "medial diaphragmatic node" EXACT [FMA:12807] synonym: "middle diaphragmatic lymph node" EXACT [FMA:12807] xref: FMA:12807 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038137 name: parietal pre-aortic lymph node synonym: "parietal pre-aortic node" EXACT [FMA:16603] synonym: "parietal preaortic node" EXACT [FMA:16603] xref: FMA:16603 is_a: UBERON:0037601 {source="FMA"} ! left parietal lumbar lymph node [Term] id: UBERON:0038139 name: retro-aortic lymph node synonym: "post-aortic lymph node" EXACT [FMA:16607] synonym: "postaortic lymph node" EXACT [FMA:16607] synonym: "retro-aortic node" EXACT [FMA:16607] synonym: "retroaortic lymph node" EXACT [FMA:16607] xref: FMA:16607 is_a: UBERON:0037601 {source="FMA"} ! left parietal lumbar lymph node [Term] id: UBERON:0038587 name: paracardiac lymph node synonym: "paracardiac node" EXACT [FMA:265350] xref: FMA:265350 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038632 name: pericardial lymph node xref: FMA:276807 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038633 name: aortopulmonary lymph node synonym: "5 thoracic lymph node" EXACT [FMA:276813] synonym: "aortopulmonary window lymph node" EXACT [FMA:276813] synonym: "mediastinal lymph node station # 5" EXACT [FMA:276813] synonym: "station 5 lymph node" EXACT [FMA:276813] synonym: "station 5 N2 lymph node" EXACT [FMA:276813] synonym: "subaortic lymph node" RELATED [FMA:276813] xref: FMA:276813 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038634 name: para-aortic thoracic lymph node synonym: "6 thoracic lymph node" EXACT [FMA:276820] synonym: "pre-aortic No. 6 lymph node" EXACT [FMA:276820] synonym: "station 6 lymph node" EXACT [FMA:276820] synonym: "station 6 N2 lymph node" EXACT [FMA:276820] xref: FMA:276820 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038635 name: interlobar lymph node synonym: "11 R+L thoracic" EXACT [FMA:276828] synonym: "11 thoracic lymph node" EXACT [FMA:276828] synonym: "station 11 lymph node" EXACT [FMA:276828] synonym: "station 11 N1 lymph node" EXACT [FMA:276828] xref: FMA:276828 is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node [Term] id: UBERON:0038638 name: lobar lymph node synonym: "12R+L thoracic lymph node" EXACT [FMA:276849] synonym: "station 12 lymph node" EXACT [FMA:276849] synonym: "station 12 N1 lymph node" EXACT [FMA:276849] xref: FMA:276849 is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node [Term] id: UBERON:0038641 name: segmental lymph node synonym: "13R+L thoracic lymph node" EXACT [FMA:276855] synonym: "station 13 lymph node" EXACT [FMA:276855] synonym: "station 13 N1 lymph node" EXACT [FMA:276855] xref: FMA:276855 is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node [Term] id: UBERON:0038647 name: lymph node of inferior pulmonary ligament synonym: "9R+L thoracic lymph node" EXACT [FMA:276867] synonym: "inferior pulmonary ligament lymph node" EXACT [FMA:276867] synonym: "node of inferior pulmonary ligament" EXACT [FMA:276867] synonym: "pulmonary ligament lymph node" EXACT [FMA:276867] synonym: "station 9 lymph node" EXACT [FMA:276867] synonym: "station 9 N2 lymph node" EXACT [FMA:276867] xref: FMA:276867 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038651 name: superior mediastinal lymph node xref: FMA:276903 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038684 name: superior left gastric lymph node def: "Left gastric lymph node located along the left gastric artery." [FMA:277061] synonym: "jPS 7 node" EXACT [FMA:277061] synonym: "jPS no. 7 node" EXACT [FMA:277061] synonym: "no. 7 left gastric lymph node" EXACT [FMA:277061] synonym: "superior left gastric node" EXACT [FMA:277061] xref: FMA:277061 is_a: UBERON:0037580 {source="FMA"} ! left gastric lymph node [Term] id: UBERON:0038685 name: inferior left gastric lymph node def: "Left gastric lymph node located along the cardiac half of the lesser curvature of stomach in the lesser omentum." [FMA:277064] synonym: "inferior left gastric node" EXACT [FMA:277064] synonym: "jPS 3 node" EXACT [FMA:277064] synonym: "jPS No. 3 node" EXACT [FMA:277064] xref: FMA:277064 is_a: UBERON:0037580 {source="FMA"} ! left gastric lymph node [Term] id: UBERON:0038687 name: visceral lymph node of abdomen xref: FMA:277227 is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0038691 name: common hepatic lymph node def: "Hepatic lymph node located along the common hepatic artery." [FMA:277259] xref: FMA:277259 is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node [Term] id: UBERON:0038694 name: hepatoportal lymph node def: "Hepatic lymph node located along the portal vein." [FMA:277271] synonym: "jPS 12p node" EXACT [FMA:277271] synonym: "jPS No. 12p node" EXACT [FMA:277271] synonym: "no. 12p hepatic lymph node" EXACT [FMA:277271] synonym: "periportal lymph node" EXACT [FMA:277271] synonym: "porta hepatis lymph node" EXACT [FMA:277271] synonym: "portahepatic lymph node" EXACT [FMA:277271] synonym: "portal lymph node" BROAD [FMA:277271] xref: FMA:277271 is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node [Term] id: UBERON:0038695 name: proximal superior pancreatic lymph node def: "Superior pancreatic lymph node located along the proximal segment of splenic artery." [FMA:277295] synonym: "jPS 11p node" EXACT [FMA:277295] synonym: "jPS no. 11p node" EXACT [FMA:277295] synonym: "no. 11p superior pancreatic lymph node" EXACT [FMA:277295] synonym: "proximal superior pancreaticosplenic lymph node" EXACT [FMA:277295] xref: FMA:277295 is_a: UBERON:0015865 {source="FMA"} ! pancreaticosplenic lymph node [Term] id: UBERON:0038696 name: distal superior pancreatic lymph node def: "Superior pancreatic lymph node located along the distal segment of splenic artery." [FMA:277298] synonym: "distal superior pancreaticosplenic lymph node" EXACT [FMA:277298] synonym: "jPS 11d node" EXACT [FMA:277298] synonym: "jPS no. 11d node" EXACT [FMA:277298] synonym: "no. 11d superior pancreatic lymph node" EXACT [FMA:277298] xref: FMA:277298 is_a: UBERON:0015865 {source="FMA"} ! pancreaticosplenic lymph node [Term] id: UBERON:0038697 name: anterior superior pancreaticoduodenal lymph node def: "Superior pancreaticoduodenal lymph node located on the anterior anterior of superior region of head of pancreas." [FMA:277305] synonym: "anterosuperior pancreaticoduodenal lymph node" EXACT [FMA:277305] synonym: "jPS 17a node" EXACT [FMA:277305] synonym: "jPS no. 17a node" EXACT [FMA:277305] synonym: "no. 17a pancreaticoduodenal lymph node" EXACT [FMA:277305] xref: FMA:277305 is_a: UBERON:0037527 {source="FMA"} ! superior pancreaticoduodenal lymph node [Term] id: UBERON:0038698 name: posterior superior pancreaticoduodenal lymph node def: "Superior pancreaticoduodenal lymph node located on the posterior aspect of superior portion of head of pancreas." [FMA:277310] synonym: "jPS 13a node" EXACT [FMA:277310] synonym: "jPS no. 13a node" EXACT [FMA:277310] synonym: "no. 13a pancreaticoduodenal lymph node" EXACT [FMA:277310] synonym: "posterosuperior pancreaticoduodenal lymph node" EXACT [FMA:277310] xref: FMA:277310 is_a: UBERON:0037527 {source="FMA"} ! superior pancreaticoduodenal lymph node [Term] id: UBERON:0038699 name: anterior inferior pancreaticoduodenal lymph node def: "Inferior pancreaticoduodenal lymph node located on the anterior aspect of inferior region of head of pancreas." [FMA:277315] synonym: "anteroinferior pancreaticoduodenal lymph node" EXACT [FMA:277315] synonym: "jPS 17b node" EXACT [FMA:277315] synonym: "jPS no. 17b node" EXACT [FMA:277315] synonym: "no. 17b pancreaticoduodenal lymph node" EXACT [FMA:277315] xref: FMA:277315 is_a: UBERON:0037528 {source="FMA"} ! inferior pancreaticoduodenal lymph node [Term] id: UBERON:0038700 name: posterior inferior pancreaticoduodenal lymph node def: "Inferior pancreaticoduodenal lymph node located on the posterior aspect of inferior region of head of pancreas." [FMA:277317] synonym: "jPS 13b node" EXACT [FMA:277317] synonym: "jPS no. 13b node" EXACT [FMA:277317] synonym: "no. 13b pancreaticoduodenal lymph node" EXACT [FMA:277317] synonym: "posteroinferior pancreaticoduodenal lymph node" EXACT [FMA:277317] xref: FMA:277317 is_a: UBERON:0037528 {source="FMA"} ! inferior pancreaticoduodenal lymph node [Term] id: UBERON:0038707 name: anterior pancreaticoduodenal lymph node synonym: "jPS 17 node" EXACT [FMA:277368] synonym: "no. 17 pancreaticoduodenal lymph node" EXACT [FMA:277368] xref: FMA:277368 is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node [Term] id: UBERON:0038727 name: juxta-intestinal mesenteric lymph node synonym: "mural mesenteric lymph node" EXACT [FMA:277581] synonym: "para-intestinal mesenteric lymph node" EXACT [FMA:277581] xref: FMA:277581 is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0038734 name: visceral pre-aortic lymph node def: "Intestinal lymph node located anterior to aorta." [FMA:277610] synonym: "visceral para-aortic lymph node" EXACT [FMA:277610] synonym: "visceral pre-aortic node" EXACT [FMA:277610] synonym: "visceral preaortic lymph node" EXACT [FMA:277610] xref: FMA:277610 is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0038735 name: juxta-arterial jejunal lymph node xref: FMA:277614 is_a: UBERON:0037515 {source="FMA"} ! juxta-arterial mesenteric lymph node [Term] id: UBERON:0038736 name: juxta-arterial ileal lymph node xref: FMA:277616 is_a: UBERON:0037515 {source="FMA"} ! juxta-arterial mesenteric lymph node [Term] id: UBERON:0038737 name: intermediate jejunal lymph node xref: FMA:277618 is_a: UBERON:0037514 {source="FMA"} ! intermediate mesenteric lymph node [Term] id: UBERON:0038738 name: intermediate ileal lymph node xref: FMA:277620 is_a: UBERON:0037514 {source="FMA"} ! intermediate mesenteric lymph node [Term] id: UBERON:0038746 name: gastro-epiploic lymph node def: "Gastric lymph node located along the greater curvature of stomach." [FMA:277652] synonym: "gastro-epiploic node" EXACT [FMA:277652] synonym: "gastro-omental lymph node" EXACT [FMA:277652] synonym: "gastro-omental node" EXACT [FMA:277652] synonym: "jPS 4 node" EXACT [FMA:277652] synonym: "jPS No. 4 node" EXACT [FMA:277652] synonym: "lymph node of greater curvature of stomach" EXACT [FMA:277652] xref: FMA:277652 is_a: UBERON:0015863 {source="FMA"} ! gastric lymph node [Term] id: UBERON:0038784 name: pararectal lymph node of pelvis xref: FMA:278181 is_a: UBERON:0037615 {source="FMA"} ! pararectal lymph node [Term] id: UBERON:0038787 name: superior ileocolic lymph node xref: FMA:278188 is_a: UBERON:0016378 {source="FMA"} ! ileocolic lymph node [Term] id: UBERON:0038796 name: lymph node along bile duct synonym: "biliary lymph node" EXACT [FMA:281309] synonym: "jPS 12b node" EXACT [FMA:281309] synonym: "jPS No. 12b node" EXACT [FMA:281309] synonym: "no. 12b hepatic lymph node" EXACT [FMA:281309] xref: FMA:281309 is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node [Term] id: UBERON:0038818 name: posterior ancreaticoduodenal lymph node synonym: "jPS 13 node" EXACT [FMA:304577] synonym: "no. 13 pancreaticoduodenal lymph node" EXACT [FMA:304577] xref: FMA:304577 is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node [Term] id: UBERON:0038849 name: craniocervical lymph node def: "Lymph node located in either head and neck region." [FMA:321555] synonym: "head and neck lymph node" EXACT [FMA:321555] synonym: "lymph node of head and neck" EXACT [FMA:321555] xref: FMA:321555 is_a: UBERON:0000029 {source="FMA"} ! lymph node [Term] id: UBERON:0038853 name: superficial popliteal lymph node xref: FMA:44231 is_a: UBERON:0001543 {source="FMA"} ! popliteal lymph node [Term] id: UBERON:0038854 name: deep popliteal lymph node xref: FMA:44232 is_a: UBERON:0001543 {source="FMA"} ! popliteal lymph node [Term] id: UBERON:0038855 name: superior medial inguinal lymph node synonym: "superomedial node" EXACT [FMA:44297] xref: FMA:44297 is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node [Term] id: UBERON:0038856 name: superior lateral inguinal lymph node synonym: "superolateral node" EXACT [FMA:44301] xref: FMA:44301 is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node [Term] id: UBERON:0038857 name: inferior inguinal lymph node synonym: "inferior inguinal node" EXACT [FMA:44302] synonym: "subinguinal lymph node" EXACT [FMA:44302] xref: FMA:44302 is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node [Term] id: UBERON:0038859 name: intermediate deep inguinal lymph node synonym: "cloquet's gland" EXACT [FMA:44304] synonym: "cloquet's node" EXACT [FMA:44304] synonym: "intermediate deep inguinal node" EXACT [FMA:44304] synonym: "intermediate inguinal lymph node" EXACT [FMA:44304] synonym: "middle inguinal node" EXACT [FMA:44304] synonym: "nodus inguinales profundi intermedius" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus inguinales profundi intermedius" EXACT OMO:0003011 [FMA:TA] xref: FMA:44304 is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node [Term] id: UBERON:0038860 name: distal deep inguinal lymph node synonym: "distal deep inguinal node" EXACT [FMA:44305] synonym: "distal inguinal lymph node" EXACT [FMA:44305] synonym: "nodus inguinales profundi distalis" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus inguinales profundi distalis" EXACT OMO:0003011 [FMA:TA] xref: FMA:44305 is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node [Term] id: UBERON:0038861 name: tibial lymph node synonym: "tIbial node" EXACT [FMA:44306] xref: FMA:44306 is_a: UBERON:0016398 {source="FMA"} ! lymph node of lower limb [Term] id: UBERON:0038864 name: fibular lymph node synonym: "fibular node" EXACT [FMA:44309] synonym: "nodus fibularis" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus fibularis" EXACT OMO:0003011 [FMA:TA] synonym: "peroneal lymph node" EXACT [FMA:44309] synonym: "peroneal node" EXACT [FMA:44309] xref: FMA:44309 is_a: UBERON:0016398 {source="FMA"} ! lymph node of lower limb [Term] id: UBERON:0038867 name: interpectoral lymph node synonym: "interpectoral node" EXACT [FMA:44312] xref: FMA:44312 is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038868 name: paramammary lymph node synonym: "paramammary node" EXACT [FMA:44313] xref: FMA:44313 is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0038870 name: cubital lymph node synonym: "cubital node" EXACT [FMA:44315] xref: FMA:44315 is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038871 name: supratrochlear lymph node synonym: "supra-epicondylar lymph node" EXACT [FMA:44316] synonym: "supratrochlear node" EXACT [FMA:44316] xref: FMA:44316 is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038878 name: lateral diaphragmatic lymph node synonym: "lateral diaphragmatic node" EXACT [FMA:5935] xref: FMA:5935 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038879 name: anterior diaphragmatic lymph node synonym: "anterior diaphragmatic node" EXACT [FMA:5936] xref: FMA:5936 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038882 name: posterior diaphragmatic lymph node synonym: "posterior diaphragmatic node" EXACT [FMA:5941] xref: FMA:5941 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038885 name: brachiocephalic lymph node synonym: "brachiocephalic node" EXACT [FMA:5944] synonym: "innominate lymph node" EXACT [FMA:5944] xref: FMA:5944 is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0038888 name: posterior mediastinal lymph node synonym: "nodus mediastinale posteriore lymphaticus" EXACT [FMA:5947] synonym: "posterior mediastinal node" EXACT [FMA:5947] xref: FMA:5947 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038894 name: paratracheal lymph node synonym: "cervical paratracheal lymph node" EXACT [FMA:5953] synonym: "nodus paratracheale lymphaticus" EXACT [FMA:5953] synonym: "paratracheal node" EXACT [FMA:5953] synonym: "tracheal lymph node" EXACT [FMA:5953] xref: FMA:5953 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038897 name: superior tracheobronchial lymph node synonym: "4 thoracic lymph node" EXACT [FMA:5959] synonym: "4R+L thoracic lymph node" EXACT [FMA:5959] synonym: "lower paratracheal lymph node" EXACT [FMA:5959] synonym: "nodus tracheobronchiale superiore lymphaticus" EXACT [FMA:5959] synonym: "station 4 lymph node" EXACT [FMA:5959] synonym: "station 4 N2 lymph node" EXACT [FMA:5959] xref: FMA:5959 is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node [Term] id: UBERON:0038900 name: inferior tracheobronchial lymph node synonym: "carinate lymph node" EXACT [FMA:5962] synonym: "nodus tracheobronchialis inferioris lymphaticus" EXACT [FMA:5962] xref: FMA:5962 is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node [Term] id: UBERON:0038920 name: buccinator lymph node synonym: "buccinator node" EXACT [FMA:61223] synonym: "nodus buccinatorius" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus buccinatorius" EXACT OMO:0003011 [FMA:TA] xref: FMA:61223 is_a: UBERON:0015871 {source="FMA"} ! facial lymph node [Term] id: UBERON:0038922 name: nasolabial lymph node synonym: "nasolabial node" EXACT [FMA:61225] synonym: "nodus lymphoideus nasolabialis" EXACT OMO:0003011 [FMA:TA] synonym: "nodus nasolabialis" EXACT OMO:0003011 [FMA:TA] xref: FMA:61225 is_a: UBERON:0015871 {source="FMA"} ! facial lymph node [Term] id: UBERON:0038923 name: malar lymph node synonym: "malar node" EXACT [FMA:61226] synonym: "nodus lymphoideus malaris" EXACT OMO:0003011 [FMA:TA] synonym: "nodus malaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:61226 is_a: UBERON:0015871 {source="FMA"} ! facial lymph node [Term] id: UBERON:0038925 name: lingual lymph node xref: FMA:61228 is_a: UBERON:0015870 {source="FMA"} ! lymph node of head [Term] id: UBERON:0038929 name: infrahyoid lymph node synonym: "infrahyoid node" EXACT [FMA:61233] xref: FMA:61233 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038930 name: prelaryngeal lymph node synonym: "prelaryngeal node" EXACT [FMA:61234] xref: FMA:61234 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038931 name: thyroid lymph node synonym: "thyroid node" EXACT [FMA:61235] xref: FMA:61235 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038932 name: pretracheal lymph node synonym: "pretracheal node" EXACT [FMA:61236] xref: FMA:61236 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038934 name: superior deep lateral cervical lymph node xref: FMA:61238 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0038935 name: inferior deep lateral cervical lymph node xref: FMA:61239 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0038936 name: jugulodigastric lymph node synonym: "jugulodigastric node" EXACT [FMA:61240] synonym: "nodus jugulodigastricus" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus jugulodigastricus" EXACT OMO:0003011 [FMA:TA] xref: FMA:61240 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0038938 name: accessory cervical lymph node xref: FMA:61242 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0038943 name: superior diaphragmatic lymph node synonym: "superior diaphragmatic node" EXACT [FMA:66167] xref: FMA:66167 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038951 name: suprapyloric lymph node def: "Pylorioc lymph node located near the bifurcation of gastroduodenal artery and superior to the pylorus." [FMA:66183] synonym: "jPS 5 node" EXACT [FMA:66183] synonym: "jPS no.5 node" EXACT [FMA:66183] synonym: "no. 5 station pyloric lymph node" EXACT [FMA:66183] synonym: "nodus lymphoideus suprapyloricus" EXACT OMO:0003011 [FMA:TA] synonym: "nodus suprapyloricus" EXACT OMO:0003011 [FMA:TA] synonym: "suprapyloric node" EXACT [FMA:66183] xref: FMA:66183 is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node [Term] id: UBERON:0038952 name: subpyloric lymph node def: "Pylorioc lymph node located in the angle between the superior and descending parts of duodenum." [FMA:66184] synonym: "infrapyloric lymph node" EXACT [FMA:66184] synonym: "infrapyloric node" EXACT [FMA:66184] synonym: "jPS 6 node" EXACT [FMA:66184] synonym: "jPS no. 6 node" EXACT [FMA:66184] synonym: "no. 6 station pyloric lymph node" EXACT [FMA:66184] synonym: "subpyloric node" EXACT [FMA:66184] xref: FMA:66184 is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node [Term] id: UBERON:0038953 name: retropyloric lymph node synonym: "retropyloric node" EXACT [FMA:66185] xref: FMA:66185 is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node [Term] id: UBERON:0039162 name: inferior ileocolic lymph node xref: FMA:78731 is_a: UBERON:0016378 {source="FMA"} ! ileocolic lymph node [Term] id: UBERON:0039163 name: lateral sacral lymph node xref: FMA:84597 is_a: UBERON:0002528 {source="FMA"} ! sacral lymph node [Term] id: UBERON:0039164 name: medial sacral lymph node xref: FMA:84598 is_a: UBERON:0002528 {source="FMA"} ! sacral lymph node [Term] id: UBERON:0039167 name: bronchopulmonary lymph node def: "A tracheobronchial lymph node situated in the hilum of a lung." [https://en.wikipedia.org/w/index.php?title=Tracheobronchial_lymph_nodes&oldid=974745862, https://orcid.org/0000-0002-2825-0621] synonym: "10 R+L thoracic" EXACT [FMA:5965] synonym: "bronchopulmonary node" EXACT [FMA:5965] synonym: "hilar lymph node" EXACT [FMA:5965] synonym: "station 10 lymph node" EXACT [FMA:5965] synonym: "station 10 N1 lymph node" EXACT [FMA:5965] xref: FMA:5965 is_a: UBERON:0007644 {source="FMA", source="https://orcid.org/0000-0002-2825-0621"} ! thoracic lymph node [Term] id: UBERON:0039168 name: colic lymph node synonym: "colic node" EXACT [FMA:16612] synonym: "pericolic lymph node" EXACT [FMA:16612] synonym: "pericolonic lymph node" EXACT [FMA:16612] xref: FMA:16612 xref: SCTID:281593008 is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0039169 name: anterior intercostal artery def: "The anterior intercostal branches of internal thoracic artery supply the upper five or six intercostal spaces." [https://en.wikipedia.org/wiki/Intercostal_arteries] synonym: "intercostal branch of internal thoracic artery" EXACT [FMA:10641] xref: FMA:10641 is_a: UBERON:0005612 ! intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039170 name: mammary branch of internal thoracic artery synonym: "medial mammary branch of perforating branch of internal thoracic artery" EXACT [FMA:10648] xref: FMA:10648 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039175 name: subarachnoid space of brain xref: FMA:322073 is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0039176 name: subarachnoid space of spinal cord xref: FMA:322074 is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0039185 name: accessory vertebral vein def: "A lower continuation of the vertebral vein and vertebral venous plexus that passes through the foramen of the transverse process of the 7th cervical vertebra and empties into the brachiocephalic vein." [https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/Accessory-vertebral-vein] xref: FMA:14290 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001588 ! vertebral vein [Term] id: UBERON:0039186 name: anterior vertebral vein def: "A vein that commences in a plexus around the transverse processes of the upper cervical vertebræ, descends in company with the ascending cervical artery between the Scalenus anterior and Longus capitis muscles, and opens into the terminal part of the vertebral vein." [https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/Anterior-vertebral-vein] xref: FMA:14296 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001588 ! vertebral vein [Term] id: UBERON:0039187 name: suprascapular vein def: "The suprascapular vein is a vein running above the scapula. It empties into the external jugular vein." [https://en.wikipedia.org/wiki/Suprascapular_vei] xref: FMA:14319 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039188 name: superior laryngeal vein def: "The superior laryngeal vein is a vein which drains the larynx into the superior thyroid vein." [https://en.wikipedia.org/wiki/Superior_laryngeal_vein] xref: FMA:14324 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039215 name: appendicular artery def: "An artery that commonly arises from the terminal branch of the ileocolic artery, or less commonly from the posterior cecal artery or an ileal artery.[1][2] It descends behind the termination of the ileum and enters the mesoappendix of the vermiform appendix. It runs near the free margin of the mesoappendix and ends in branches which supply the appendix." [https://en.wikipedia.org/wiki/Appendicular_artery] synonym: "appendiceal artery" EXACT [FMA:14818] xref: FMA:14818 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0039222 name: cystic artery def: "An artery that supplies oxygenated blood to the cystic duct." [http://orcid.org/0000-0002-6601-2165, https://en.wikipedia.org/wiki/Cystic_artery] synonym: "cholecystic artery" EXACT [FMA:14835] xref: FMA:14835 is_a: UBERON:0001637 ! artery is_a: UBERON:0015796 ! liver blood vessel relationship: part_of UBERON:0015482 {source="FMA", source="Wikipedia"} ! right hepatic artery property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0039228 name: sigmoid vein xref: FMA:15395 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039230 name: prepyloric vein def: "The prepyloric vein is the last connecting branch onto the right gastric vein, marking the end of the stomach, and draining the proximal part of the duodenum" [https://en.wikipedia.org/wiki/Right_gastric_vein#Structure] synonym: "Mayo's vein" EXACT [FMA:15404] xref: FMA:15404 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039232 name: conus artery def: "The conus artery is generally considered to be the first branch of the right coronary artery (RCA) in the right sinus of Valsalva. However, one study has shown that in approximately 50% of humans, the conus artery arises from a discrete ostium in the right sinus of Valsalva." [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4805038] subset: human_reference_atlas synonym: "second right coronary artery" EXACT [FMA:15736] synonym: "third coronary artery" EXACT [FMA:15736] xref: FMA:15736 is_a: UBERON:0001621 {source="FMA"} ! coronary artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:0039256 name: pubic vein def: "vein ascending the posterior aspect of the body of the pubis to drain into the inferior epigastric vein; this vein frequently (about 20% of patients) serves as an accessory or replaced obturator vein." [https://medical-dictionary.thefreedictionary.com/pubic+vein] synonym: "accessory obturator vein" EXACT [FMA:21200, https://medical-dictionary.thefreedictionary.com/pubic+vein] synonym: "pubic branch" EXACT [FMA:21200] synonym: "pubic branch of inferior epigastric vein" EXACT [https://medical-dictionary.thefreedictionary.com/pubic+vein] xref: FMA:21200 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039258 name: external vertebral venous plexus synonym: "plexus venosus vertebralis externus" EXACT [FMA:12851] xref: FMA:12851 is_a: UBERON:0039259 ! vertebral venous plexus [Term] id: UBERON:0039259 name: vertebral venous plexus xref: FMA:18935 is_a: UBERON:0001593 {source="FMA"} ! venous plexus [Term] id: UBERON:0039260 name: thyrocervical artery xref: FMA:70346 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001533 {source="FMA"} ! subclavian artery [Term] id: UBERON:0039261 name: pancreatic artery xref: FMA:70471 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0039262 name: segmental pulmonary artery synonym: "segmental pulmonary arterial tree" EXACT [FMA:8755] xref: FMA:8755 is_a: UBERON:0002012 {source="FMA"} ! pulmonary artery [Term] id: UBERON:0039267 name: obsolete deep vein of penis comment: obsoleted as believed to be equivalent to deep dorsal bein xref: FMA:0329307 is_obsolete: true replaced_by: UBERON:0006656 [Term] id: UBERON:0039288 name: rima vulvae def: "The fissure between the labia majora" [https://www.thefreedictionary.com/pudendal+cleft] synonym: "pudendal cleft" EXACT DEPRECATED [doi:10.1002/ca.23705, FMA:19995] synonym: "rima pudendi" EXACT OMO:0003011 [A09.2.01.006, doi:10.1002/ca.23705] synonym: "urogenital cleft" BROAD [https://www.thefreedictionary.com/pudendal+cleft] synonym: "vulvar slit" EXACT [https://www.thefreedictionary.com/pudendal+cleft] xref: FMA:19995 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000997 ! mammalian vulva [Term] id: UBERON:0039300 name: obsolete male pudendum xref: FMA:20461 is_obsolete: true {source="doi:10.1002/ca.23705"} [Term] id: UBERON:0039302 name: obsolete pudendum xref: FMA:20463 is_obsolete: true {source="doi:10.1002/ca.23705"} [Term] id: UBERON:0039351 name: posterior labial artery synonym: "posterior labial branch of internal pudendal artery" EXACT [FMA:20886] xref: FMA:20886 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0039355 name: urethral artery synonym: "arteria urethralis" EXACT OMO:0003011 [A12.2.15.042] xref: FMA:20903 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0039376 name: penile bulb vein synonym: "bulb of penis vein" EXACT [FMA:21267] synonym: "vena bulbi penis" EXACT [FMA:21267] xref: FMA:21267 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039377 name: urethral vein def: "A vein that drains the urethra." [UBERON:cjm] xref: FMA:21270 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039379 name: vestibular bulb vein synonym: "vena bulbi vestibuli" EXACT [FMA:21273] xref: FMA:21273 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0039418 name: Alcock's canal def: "An anatomical conduit in the pelvis through which the internal pudendal artery, internal pudendal veins, and the pudendal nerve pass." [https://en.wikipedia.org/wiki/Pudendal_canal] synonym: "canalis pudendalis" EXACT OMO:0003011 [A09.5.04.003, doi:10.1002/ca.23705] synonym: "pudendal canal" EXACT DEPRECATED [doi:10.1002/ca.23705, FMA:22071] xref: FMA:22071 is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0039421 name: superficial dorsal vein of penis def: "A vein that drains the prepuce and skin of the penis, and, running backward in the subcutaneous tissue, inclines to the right or left, and opens into the corresponding superficial external pudendal vein, a tributary of the great saphenous vein.." [https://en.wikipedia.org/wiki/Dorsal_veins_of_the_penis] xref: FMA:21384 is_a: UBERON:0039422 ! dorsal vein of penis [Term] id: UBERON:0039422 name: dorsal vein of penis def: "One of the superficial dorsal vein of the penis or the deep dorsal vein of the penis." [https://en.wikipedia.org/wiki/Dorsal_veins_of_the_penis] is_a: UBERON:0001638 ! vein is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0039835 name: posterior intercostal artery is_a: UBERON:0005612 ! intercostal artery [Term] id: UBERON:0039838 name: seventh anterior intercostal artery xref: FMA:10649 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery [Term] id: UBERON:0039839 name: eighth anterior intercostal artery xref: FMA:10650 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery [Term] id: UBERON:0039840 name: ninth anterior intercostal artery xref: FMA:10651 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery [Term] id: UBERON:0039841 name: first anterior intercostal artery synonym: "first intercostal branch of internal thoracic artery" EXACT [FMA:10652] xref: FMA:10652 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery [Term] id: UBERON:0039842 name: second anterior intercostal artery synonym: "second intercostal branch of internal thoracic artery" EXACT [FMA:10653] xref: FMA:10653 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery [Term] id: UBERON:0039843 name: third anterior intercostal artery synonym: "third intercostal branch of internal thoracic artery" EXACT [FMA:10654] xref: FMA:10654 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery [Term] id: UBERON:0039844 name: fourth anterior intercostal artery synonym: "fourth intercostal branch of internal thoracic artery" EXACT [FMA:10655] xref: FMA:10655 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery [Term] id: UBERON:0039845 name: fifth anterior intercostal artery synonym: "fifth intercostal branch of internal thoracic artery" EXACT [FMA:10656] xref: FMA:10656 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery [Term] id: UBERON:0039846 name: sixth anterior intercostal artery synonym: "sixth intercostal branch of internal thoracic artery" EXACT [FMA:10657] xref: FMA:10657 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery [Term] id: UBERON:0039847 name: suprascapular artery synonym: "transverse scapular artery" EXACT [FMA:10663] xref: FMA:10663 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0039260 {source="FMA"} ! thyrocervical artery [Term] id: UBERON:0039848 name: anterior external vertebral venous plexus xref: FMA:10787 is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus [Term] id: UBERON:0039849 name: posterior external vertebral venous plexus xref: FMA:12852 is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus [Term] id: UBERON:0039850 name: left anterior segmental artery synonym: "anterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13279] synonym: "anterior segmental artery of left lung" EXACT [FMA:13279] synonym: "anterior segmental artery of left upper lobe" EXACT [FMA:13279] xref: FMA:13279 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001652 ! left pulmonary artery [Term] id: UBERON:0039851 name: apicoposterior segmental artery synonym: "apicoposterior artery of left lung" EXACT [FMA:13281] synonym: "apicoposterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13281] synonym: "left apicoposterior pulmonary artery" EXACT [FMA:13281] xref: FMA:13281 is_a: UBERON:0039262 {source="FMA"} ! segmental pulmonary artery [Term] id: UBERON:0039856 name: right ovarian vein def: "Ovarian vein, each instance of which is a tributary of some inferior vena cava that drains the right pampiniform plexus of some broad ligament." [FMA:14342] xref: FMA:14342 is_a: UBERON:0001145 {source="FMA"} ! ovarian vein [Term] id: UBERON:0039857 name: left ovarian vein def: "Ovarian vein, each instance of which is a tributary of some left renal vein that drains the left pampiniform plexus of some broad ligament." [FMA:14347] xref: FMA:14347 is_a: UBERON:0001145 {source="FMA"} ! ovarian vein [Term] id: UBERON:0700019 name: parallel fiber def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it synapses on the dendritic branches of Purkinje cells and stellate cells." [doi:10.1007/978-94-007-1333-8_63, GO:1990032] comment: This a grouping class for parallel fibers in any species. If annotating a parallel fiber in any species other than teleost fish, consider using 'parallel fiber, bifurcated'. is_a: UBERON:0006134 ! nerve fiber is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002037 ! cerebellum property_value: dcterms-date "2023-07-10T11:45:59Z" xsd:dateTime [Term] id: UBERON:0700020 name: parallel fiber, bifurcated def: "A parallel fiber that results from the bifurcation of a cerebellar granule cell axon in the molecular layer into two diametrically opposed branches, that are oriented parallel to the long axis of the folium." [GO:1990032] is_a: UBERON:0700019 ! parallel fiber relationship: never_in_taxon NCBITaxon:70862 property_value: dcterms-date "2023-07-10T11:53:19Z" xsd:dateTime [Term] id: UBERON:1000000 name: chin ventral margin def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0008199 ! chin [Term] id: UBERON:1000001 name: collection of hairs on vertex def: "A collection of hairs that grows on the vertex (top of head)." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn synonym: "collection of hair on cranium" RELATED [] synonym: "cranial hair" RELATED [] synonym: "head hair" RELATED [] is_a: UBERON:0014382 ! collection of hairs on head or neck relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:1000002 name: cranial midline area def: "The middle part of the head, located approximately equidistant from the left and the right sides of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn synonym: "cranial midline" RELATED [] is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:1000003 name: dewlap def: "A longitudinal flap of skin that hangs beneath the lower jaw or neck." [Wikipedia:Dewlap] comment: Compare with: comb and wattle subset: phenotype_rcn xref: SCTID:13622004 xref: Wikipedia:Dewlap is_a: UBERON:1000021 ! skin of face [Term] id: UBERON:1000004 name: collection of hair on external ear def: "A collection of hairs that grows on the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn synonym: "external ear hair" RELATED [] is_a: UBERON:0014382 ! collection of hairs on head or neck relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:1000005 name: external ear margin def: "Area along the edge of the external ear." [https://github.com/obophenotype/uberon/issues/34, https://orcid.org/0000-0002-2825-0621, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001691 ! external ear property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd:string [Term] id: UBERON:1000006 name: collection of hair on forehead def: "A collection of hairs that grows on the forehead." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0010165 ! collection of hair on face relationship: part_of UBERON:0008200 ! forehead [Term] id: UBERON:1000007 name: forehead protuberance def: "A bulge, knob, or swelling that protrudes from the forehead." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0008200 ! forehead [Term] id: UBERON:1000008 name: left part of face def: "Subdivision of the head consisting of the left half of the face, vertically divided." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:1000009 name: midline crest def: "A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:1000010 name: mole def: "A benign tumor on the skin, usually with darker pigment." [Wikipedia:Melanocytic_nevus] subset: efo_slim subset: phenotype_rcn synonym: "melanocytic nevus" RELATED [] synonym: "naevus" EXACT [ZFA:0005043] synonym: "nevus" EXACT [ZFA:0005043] xref: EFO:0000625 xref: MESH:D009506 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MPATH:361 xref: TAO:0005043 xref: Wikipedia:Melanocytic_nevus xref: ZFA:0005043 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002067 {source="ZFA"} ! dermis property_value: external_definition "An ectopic melanophore accumulation analogous to a nevi (mole) in humans.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005043", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:1000011 name: labial commissure def: "Anatomical structure consisting of either corner of the mouth." [Wikipedia:Labial_commissure_of_mouth] subset: phenotype_rcn synonym: "commissura labiorum oris" RELATED OMO:0003011 [Wikipedia:Labial_commissure_of_mouth] synonym: "commissural lip" RELATED [] synonym: "corner of mouth" RELATED [] xref: FMA:277716 xref: Wikipedia:Labial_commissure_of_mouth is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0000165 ! mouth property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/90/Commissurebeforeandafter.jpg" xsd:anyURI [Term] id: UBERON:1000012 name: nose anterior margin def: "Subdivision of the head consisting of the area along the front edge of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:1000013 name: nose vertex def: "The extreme point of curvature of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:1000014 name: right part of face def: "Subdivision of the head consisting of the right half of the face, vertically divided." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:1000015 name: skin of snout def: "A zone of skin that is part of the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn synonym: "snout skin" EXACT [MA:0003079] xref: EMAPA:37746 {source="MA:th"} xref: MA:0003079 is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0006333 ! snout [Term] id: UBERON:1000016 name: tip of snout def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0006333 ! snout [Term] id: UBERON:1000017 name: tip of external ear def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:1000018 name: cluster of hairs def: "A small collection or tuft of hairs." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn synonym: "tuft of hair" RELATED [] is_a: UBERON:0010164 ! collection of hairs [Term] id: UBERON:1000019 name: top of head def: "The top of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn synonym: "vertex" RELATED [FMA:46484] synonym: "vertex of head" EXACT [FMA:46484] xref: FMA:46484 xref: SCTID:362616002 is_a: UBERON:0001444 ! subdivision of head property_value: external_ontology_notes "in the FMA, vertex is a point and not a subdivision" xsd:string {external_ontology="FMA"} [Term] id: UBERON:1000020 name: collection of hair on snout def: "A collection of hairs that grows on the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0010165 ! collection of hair on face relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 relationship: part_of UBERON:0006333 ! snout creation_date: 2012-02-05T05:21:29Z [Term] id: UBERON:1000021 name: skin of face def: "A zone of skin that is part of the face." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: pheno_slim subset: phenotype_rcn synonym: "face skin" EXACT [EMAPA:36657, FMA:24758] synonym: "facial skin" RELATED [] xref: EMAPA:36657 xref: FMA:24758 xref: NCIT:C33561 xref: SCTID:361703006 xref: UMLS:C0222084 {source="ncithesaurus:Skin_of_the_Face"} is_a: UBERON:0001084 ! skin of head relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 relationship: part_of UBERON:0001456 ! face creation_date: 2012-02-05T05:23:01Z [Term] id: UBERON:1000022 name: Zymbal's gland def: "A multilobulated modified sebaceous gland that is located at the base of the external ear, lined by stratified squamous epithelium, and secretes into the auditory canal." [http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html, ISBN:0123813611, MP:0013384] synonym: "auditory sebaceous gland" RELATED [ISBN:0123813611] synonym: "gland of Zymbal" RELATED [] synonym: "Zymbal gland" RELATED [MA:0002900] xref: EMAPA:37808 {source="MA:th"} xref: MA:0002900 xref: NCIT:C77954 xref: SCTID:105587007 xref: UMLS:C0687056 {source="ncithesaurus:Zymbal_Gland"} is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland relationship: part_of UBERON:0001691 {source="cjm"} ! external ear property_value: location_notes "located anterior and ventral to the exterior ear canal in rodents[MP:0013384]" xsd:string property_value: structure_notes "Zymbal's glands are located beneath squamous epithelium at the anterior and posterior aspect of the ear canal, and as a single external gland that is located anterior and ventral to the base of the external ear canal. The bilateral Zymbal's glands are adjacent to the auditory canal and are made up of several lobules of modified sebaceous glands - http://ratguide.com/health/neoplasia/zymbals_gland_tumor.php." xsd:string [Term] id: UBERON:1000023 name: spleen pulp def: "The parenchyma of the spleen, consisting of lymphocytes and macrophages. It lies between the splenic trabecula. Red pulp is the part suffused with blood and white pulp consists of areas of lymphatic tissue where there are sleeves of lymphocytes and macrophages." [ncithesaurus:Splenic_Pulp] subset: human_reference_atlas synonym: "Malpighian corpuscles" EXACT [FMA:15845] synonym: "pulp of spleen" EXACT [] synonym: "splenic pulp" EXACT [] xref: EMAPA:35805 xref: FMA:15845 xref: MA:0002487 xref: NCIT:C33603 xref: SCTID:13515001 xref: UMLS:C0229691 {source="ncithesaurus:Splenic_Pulp"} is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:1000024 name: parenchyma of spleen def: "A parenchyma that is part of a spleen." [OBOL:automatic] synonym: "splenic parenchyma" EXACT [FMA:16029] xref: FMA:16029 is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:1100000 name: digestive tract junction def: "An anatomical junction between two parts of the digestive tract." [https://orcid.org/0000-0002-7073-9172] is_a: UBERON:0007651 ! anatomical junction relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 creation_date: 2021-02-05T11:19:31Z [Term] id: UBERON:1500000 name: scapular blade def: "Enlarged and broad extension of the scapula distal to the glenoid region that conforms to the contour of the ribs. Origin for the major shoulder muscles including the deltoid group." [PHENOSCAPE] comment: In non-tetrapod sarcopterygians the role of the scapula blade is filled by the enlarge cleithrum. is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:1500003 name: lateral line canal lumen def: "Anatomical space that contains a portion of the lateral line system." [PHENOSCAPE] {comment="PHENOSCAPE:MAH"} comment: TO DO: think about definitions for spaces in bone, in which pass through nerves, muscles, tendons and are defined by them. is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:1500005 name: ischial cartilage def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]." [PHENOSCAPE] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:1500006 name: paired fin radial bone def: "Paired fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:1600006 ! paired fin radial element is_a: UBERON:2000271 ! radial bone [Term] id: UBERON:1500007 name: mesopterygium cartilage def: "The median, elongated basal cartilage of the pectoral fin." [PHENOSCAPE] comment: Relevant for Elasmobranchii, Holocephali and primitive Teleostomi. {xref="http://www.briancoad.com/dictionary/DicPics/mesopterygium.htm"} is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage is_a: UBERON:4300081 ! mesopterygium element [Term] id: UBERON:1500008 name: pelvic fin distal radial bone def: "Pelvic fin radial that develops from the pelvic fin endoskeletal disc. Pelvic fin distal radials are paired." [PHENOSCAPE] comment: Placeholder definition, fix me. is_a: UBERON:1600008 ! pelvic fin distal radial element is_a: UBERON:2000508 ! pelvic fin radial bone relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 [Term] id: UBERON:1500009 name: pelvic fin basipterygial radial def: "Pelvic fin radial that is an endochondral fused radials or pterygiophores at the base of the pelvic fin." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:2000508 ! pelvic fin radial bone relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 [Term] id: UBERON:1500010 name: pelvic fin middle radial bone def: "Pelvic fin radial in the middle of the pelvic fin." [PHENOSCAPE] comment: placeholder def, fix me. is_a: UBERON:2000508 ! pelvic fin radial bone relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 [Term] id: UBERON:1600006 name: paired fin radial element def: "Radial element that is part of a paired fin." [PHENOSCAPE] is_a: UBERON:2100271 ! radial element relationship: part_of UBERON:4300013 ! paired fin radial skeleton [Term] id: UBERON:1600008 name: pelvic fin distal radial element def: "Pelvic fin radial element that develops from the pelvic fin endoskeletal disc. Pelvic fin distal radial elements are paired." [PHENOSCAPE] comment: Placeholder definition, fix me. is_a: UBERON:2100508 ! pelvic fin radial element [Term] id: UBERON:1600009 name: obsolete pelvic fin basipterygial radial element def: "Pelvic fin radial element that is an endochondral fused radial elements or pterygiophores at the base of the pelvic fin." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] comment: Obsoleted because basipterygium is not a type of radial. is_obsolete: true [Term] id: UBERON:1600010 name: pelvic fin middle radial element def: "Pelvic fin radial element in the middle of the pelvic fin." [PHENOSCAPE] comment: placeholder def, fix me. is_a: UBERON:2100508 ! pelvic fin radial element [Term] id: UBERON:1700006 name: paired fin radial cartilage def: "Paired fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:1600006 ! paired fin radial element is_a: UBERON:2200271 ! radial cartilage [Term] id: UBERON:2000000 name: Brachet's cleft def: "The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000000 is_a: UBERON:0002050 ! embryonic structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000001 name: Kupffer's vesicle def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kimmel et al, 1995. Kupffer's vesicle has been compared to the mouse embryonic node. Drummond et al, 2005." [ZFIN:curator] xref: ZFA:0000001 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002533 ! post-anal tail bud property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000003 name: obsolete adaxial cell comment: TO DO: replaced by CL:0007016 not in release of CL yet. synonym: "adaxial cells" EXACT OMO:0003004 [TAO:0000003] xref: ZFA:0000003 is_obsolete: true [Term] id: UBERON:2000004 name: anterior axial hypoblast synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] xref: ZFA:0000004 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2001378 ! axial hypoblast property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000006 name: ball def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] xref: MESH:D015452 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ZFA:0000006 is_a: UBERON:0000475 ! organism subdivision relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:2000084 ! yolk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000023 name: obsolete forerunner cell group def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kuppfer's vesicle. Cooper and D'Amico, 1996." [ZFIN:curator] comment: incorrectly generalized to teleosts so being obsoleted. 'embryonic structure' and develops_from some 'noninvoluting endocytic marginal cell cluster' synonym: "DFCs" EXACT [TAO:0000023] synonym: "dorsal forerunner cells" EXACT [TAO:0000023] synonym: "forerunner cells" EXACT OMO:0003004 [TAO:0000023] xref: ZFA:0000023 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000033 name: intermediate cell mass of mesoderm synonym: "ICM" EXACT [TAO:0000033] synonym: "intermediate cell mass of Oellacher" EXACT [TAO:0000033] synonym: "posterior intermediate cell mass" EXACT [TAO:0000033] xref: ZFA:0000033 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0003081 ! lateral plate mesoderm relationship: develops_from UBERON:2001201 ! ventral lateral mesoderm relationship: part_of UBERON:0002390 ! hematopoietic system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000039 name: median axial vein xref: ZFA:0000039 is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000040 name: median fin fold def: "Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent." [ZFIN:curator] synonym: "median fin" RELATED [TAO:0000040] synonym: "median fin-fold" RELATED [TAO:0000040] synonym: "median fin-folds" RELATED OMO:0003004 [TAO:0000040] xref: ZFA:0000040 is_a: UBERON:0003102 ! surface structure relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000043 name: obsolete muscle pioneer somite 1 synonym: "muscle pioneers somite 1" EXACT OMO:0003004 [TAO:0000043] xref: ZFA:0000043 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000044 name: myotome somite 14 def: "Portion of somite 14 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000044 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000726 ! somite 14 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000052 name: dorsal actinotrichium def: "Actinotrichium which is part of the dorsal fin fold." [TAO:wd] synonym: "dorsal actinotrichia" EXACT OMO:0003004 [TAO:0000052] xref: ZFA:0000052 is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:2000102 ! dorsal fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000058 name: polster def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "pillow" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000058 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:2000004 ! anterior axial hypoblast relationship: part_of UBERON:0003063 ! prechordal plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000068 name: neural plate proneural cluster synonym: "neural plate proneural clusters" EXACT OMO:0003004 [TAO:0000068] synonym: "proneural cluster" RELATED [TAO:0000068] xref: ZFA:0000068 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000070 name: obsolete sensory axons peripheral comment: removed axiom: part_of some 'sensory system'.\nSeems out of scope for uberon and/or not very useful as a class. xref: ZFA:0000070 is_obsolete: true [Term] id: UBERON:2000072 name: somite 1 def: "Anteriormost undifferentiated mesodermal component of early trunk segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000072 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "1" xsd:nonNegativeInteger [Term] id: UBERON:2000073 name: somite 5 def: "Undifferentiated mesodermal component of early trunk segment 5 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000073 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "5" xsd:nonNegativeInteger [Term] id: UBERON:2000074 name: somite 26 def: "Undifferentiated mesodermal component of early tail segment 26 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000074 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "26" xsd:nonNegativeInteger [Term] id: UBERON:2000078 name: ventral actinotrichium def: "Actinotrichium which is part of the ventral fin fold." [TAO:wd] synonym: "ventral actinotrichia" EXACT OMO:0003004 [TAO:0000078] xref: ZFA:0000078 is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:2001069 ! ventral fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000083 name: ventral mesoderm xref: ZFA:0000083 is_a: UBERON:0000926 ! mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000084 name: yolk def: "Nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000084 is_a: UBERON:0002050 ! embryonic structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000088 name: yolk syncytial layer def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995." [ZFIN:curator] synonym: "periblast" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000088 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:2000084 ! yolk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000089 name: actinotrichium def: "Elastoidin fin ray that is slender, sometimes branched distally and present in the embryonic fin fold. Actinotrichia are translucent and exhibit birefringence." [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] comment: Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): 'Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; Géraudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (Géraudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (Géraudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).' synonym: "actinotrichia" EXACT OMO:0003004 [TAO:0000089] xref: ZFA:0000089 xref: ZFA:0005435 is_a: UBERON:4400006 ! elastoidin fin ray relationship: develops_from UBERON:0001003 {comment="PHENOSCAPE:pm"} ! skin epidermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000090 name: apical ectodermal ridge dorsal fin def: "Apical ectodermal ridge that is part of the dorsal fin." [ZFIN:curator] xref: ZFA:0000090 is_a: UBERON:0004356 ! apical ectodermal ridge relationship: part_of UBERON:0003097 ! dorsal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000092 name: obsolete axis synonym: "midline" EXACT [TAO:0000092] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000093 name: obsolete blastomere def: "A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995." [ZFIN:curator] comment: Term already present in CL. For the subclasses, see http://purl.obolibrary.org/obo/cl/tracker/18 synonym: "blastomeres" EXACT OMO:0003004 [TAO:0000093] xref: ZFA:0000093 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: CL:0000353 [Term] id: UBERON:2000096 name: cardinal system xref: ZFA:0000096 is_a: UBERON:0004537 ! blood vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000098 name: proliferative region synonym: "cell cycle" RELATED [TAO:0000098] synonym: "cell division" RELATED [TAO:0000098] synonym: "proliferation" RELATED [TAO:0000098] xref: ZFA:0000098 is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000102 name: dorsal fin fold def: "Region of the median fin fold that develops into the dorsal fin." [ZFIN:curator] synonym: "dorsal fin-fold" EXACT [TAO:0000102] xref: ZFA:0000102 is_a: UBERON:0000481 ! multi-tissue structure relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:2000040 ! median fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000103 name: supramaxilla def: "Dermal bone that is located on the dorsal margin of the maxilla, usually at the dorso-posterior region of maxilla. The supramaxilla is a paired bone." [TAO:ga_tg] comment: The supramaxilla may be present as one or two bones. is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000104 name: suprapreopercle def: "Dermal bone that is located dorsal to the preopercle or lies on the antero-dorsal corner of the opercle, and encloses the upper section of the preopercular canal. The suprapreopercle is paired." [TAO:GA_TG] comment: Synonyms: supraopercle (Roberts 1969) supraopercular bone (Buckup 1998) synonym: "supraopercle" EXACT [TAO:0000104] synonym: "supraopercular bone" EXACT [TAO:0000104] synonym: "suprapreopercles" EXACT OMO:0003004 [TAO:0000104] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000106 name: extension def: "The posterior elongated region of the yolk cell that forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk extension" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000106 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:2000084 ! yolk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000116 name: macula lagena xref: ZFA:0000116 is_a: UBERON:0000054 ! macula relationship: part_of UBERON:0002518 ! otolith organ property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000120 name: lateral line ganglion def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFA:0000120, ZFA:curator] subset: efo_slim synonym: "lateral line ganglia" EXACT OMO:0003004 [TAO:0000120] synonym: "LLG" EXACT OMO:0003000 [TAO:0000120] xref: EFO:0003493 xref: TAO:0000120 xref: XAO:0004457 xref: ZFA:0000120 is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0009128 ! lateral line placode relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:2000125 name: mandibular lateral line neuromast def: "Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast mandibular" EXACT [TAO:0000125] synonym: "neuromasts mandibular" EXACT OMO:0003004 [TAO:0000125] xref: ZFA:0000125 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000259 ! mandibular lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000127 name: antorbital def: "Dermal bone positioned as the first bone of the infraorbital series. The antorbital articulates with the lacrimal or infraorbital 1 anteroventrally and the supraorbital posterodorsally. The antorbital is a paired bone." [TAO:GA_TG] comment: The antorbital in some teleosts fuses with the lacrimal. The antorbital contains the end branch of the infraorbital canal or neuromasts for the infraorbital canal in basal teleosts such as elopiformes, some osteoglossomorphs and fossil basal teleosts. synonym: "adnasal" EXACT [TAO:Goodrich_1930, TAO:Regan_1923] synonym: "lateral rostral" EXACT [TAO:Jollie_1984] synonym: "periorbital" EXACT [TAO:Bridge_1877] is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010321 ! skeletal element of eye region relationship: part_of UBERON:0001697 ! orbit of skull relationship: part_of UBERON:2001709 ! infraorbital series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000136 name: otic lateral line neuromast def: "Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast otic" EXACT [TAO:0000136] synonym: "neuromasts otic" EXACT OMO:0003004 [TAO:0000136] xref: ZFA:0000136 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000464 ! otic lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000139 name: immature otolith def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)." [ZFIN:curator] synonym: "immature otoliths" EXACT OMO:0003004 [TAO:0000139] is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0003051 ! ear vesicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000147 name: obsolete presumptive epidermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000156 name: somite 20 def: "Undifferentiated mesodermal component of early trunk or tail segment 20 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000156 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "20" xsd:nonNegativeInteger [Term] id: UBERON:2000157 name: somite 30 def: "Posteriormost undifferentiated mesodermal component of early tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000157 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "30" xsd:nonNegativeInteger [Term] id: UBERON:2000164 name: ventral mesenchyme xref: ZFA:0000164 is_a: UBERON:0003104 ! mesenchyme property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000165 name: inferior lobe synonym: "inferior lobes" EXACT OMO:0003004 [TAO:0000165] xref: ZFA:0000165 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000167 name: obsolete anal fin skeleton def: "Median fin skeleton that is located posterior to the anus." [TAO:wd] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000166 [Term] id: UBERON:2000168 name: anterior macula def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)." [ZFIN:curator] synonym: "am" EXACT [TAO:0000168] xref: ZFA:0000168 is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2001096 ! immature anterior macula relationship: part_of UBERON:0002518 ! otolith organ property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000171 name: interhyal bone def: "Replacement bone that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] comment: It articulates ventrally with the posterior end of the posterior ceratohyal. synonym: "stylohyal bone" EXACT [TAO:0000171] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001892 ! interhyal element relationship: develops_from UBERON:2001511 ! interhyal cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000174 name: caudal cerebellar tract xref: ZFA:0000174 is_a: UBERON:0002317 ! white matter of cerebellum relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000175 name: posterior lateral line nerve def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:curator] synonym: "caudal lateral line nerve" EXACT [TAO:0000175] xref: ZFA:0000175 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2001471 ! posterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000176 name: lateral entopeduncular nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000204 ! ventral part of telencephalon property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000177 name: caudal oblique xref: ZFA:0000177 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000178 name: caudal peduncle xref: ZFA:0000178 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000181 name: obsolete caudal zone of D synonym: "posterior zone of dorsal telencephalic area" EXACT [TAO:0000181] xref: ZFA:0000181 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000182 name: central caudal thalamic nucleus synonym: "central posterior thalamic nucleus" EXACT [TAO:0000182] xref: ZFA:0000182 is_a: UBERON:0015233 ! nucleus of dorsal thalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000183 name: central pretectum xref: ZFA:0000183 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001944 ! pretectal region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000185 name: commissura rostral, pars ventralis def: "Part of the anterior commissure which abuts the preoptic region dorsally." [ISBN:3764351209] xref: ZFA:0000185 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0000935 ! anterior commissure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000187 name: lateral granular eminence is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000307 ! vestibulolateralis lobe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000188 name: corpus cerebelli synonym: "cerebellar corpus" EXACT [TAO:0000188] synonym: "corpus cerebellum" EXACT [TAO:0000188] xref: MESH:D002531 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ZFA:0000188 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000193 name: diffuse nuclei xref: ZFA:0000193 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000165 ! inferior lobe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000194 name: dorsal accessory optic nucleus xref: ZFA:0000194 is_a: UBERON:0035566 ! central pretectal nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000195 name: dorsal depressor muscle xref: ZFA:0000195 is_a: UBERON:2005270 ! depressor muscle relationship: part_of UBERON:2000648 ! dorsal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000196 name: dorsal hypohyal bone def: "Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly and the ventral hypohyal bone ventrally." [ZFIN:curator] synonym: "dorsal hypohyals" EXACT OMO:0003004 [TAO:0000196] synonym: "dorsohyal" EXACT [TAO:0000196] synonym: "upper hypohyal" EXACT [TAO:0000196] xref: ZFA:0000196 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0011610 ! ceratohyal cartilage relationship: develops_from UBERON:0011612 ! hypohyal cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000197 name: obsolete dorsal nucleus is_obsolete: true consider: UBERON:0008993 consider: ZFA:0000197 [Term] id: UBERON:2000199 name: dorsal periventricular hypothalamus xref: ZFA:0000199 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000201 name: dorsal transverse synonym: "transversus dorsalis" EXACT [TAO:0000201] xref: ZFA:0000201 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000202 name: efferent portion of pharyngeal arch artery def: "A section of a pharyngeal arch artery that carries blood away from the gills." [ISBN:0073040584] synonym: "efferent branchial artery" EXACT [ZFA:0000202] synonym: "efferent portion of branchial artery" EXACT [] xref: TAO:0000202 xref: ZFA:0000202 is_a: UBERON:0003469 ! respiratory system artery [Term] id: UBERON:2000203 name: rhinosphenoid def: "An endochondral bone which is located anterior to the orbitosphenoid and medial to the paired lateral ethmoid. Rhinosphenoid is a median bone." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010321 ! skeletal element of eye region is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001697 ! orbit of skull relationship: part_of UBERON:0003111 ! sphenoid region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000205 name: external ventral flexor xref: ZFA:0000205 is_a: UBERON:0000366 ! flexor muscle relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000209 name: lateral preglomerular nucleus xref: ZFA:0000209 is_a: UBERON:2002226 ! preglomerular nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000210 name: gigantocellular part of magnocellular preoptic nucleus xref: ZFA:0000210 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001928 ! preoptic area property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000211 name: gill lamella synonym: "gill lamellae" EXACT OMO:0003004 [TAO:0000211] xref: ZFA:0000211 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000212 name: granular eminence xref: ZFA:0000212 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000214 name: hypobranchial vessel synonym: "hypobranchial vessels" EXACT OMO:0003004 [TAO:0000214] xref: ZFA:0000214 is_a: UBERON:0003498 ! heart blood vessel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000216 name: infracarinalis xref: ZFA:0000216 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000221 name: internal levator xref: ZFA:0000221 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000222 name: isthmic primary nucleus xref: ZFA:0000222 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000223 name: infraorbital 1 def: "Infraorbital in fishes that is the first (anteriormost) bone of the infraorbital series." [ZFIN:curator] comment: Suborbital and infraorbital 1 are synonymized by some authors (e.g., Cuvier), however, a suborbital bone in fishes has a different meaning than an infraorbital 1; it is a bone(s) that it is placed between the postero-dorsal infraorbitals and preopercle. A suborbital (also named postorbital by some authors) is not present in extant teleosts with the exception of Arapaima where it is occasionally present. Suborbital bones are found in some fossil basal teleosts. [G. Arratia] synonym: "lachrymal" EXACT [PSPUB:0000119] synonym: "lachrymal bone" RELATED [TAO:0000223] synonym: "lacrimal bone" RELATED [TAO:0000223] synonym: "lacrymal" EXACT [PSPUB:0000164] synonym: "lacrymal bone" RELATED [TAO:0000223] synonym: "suborbital" EXACT [TAO:0000223] xref: ZFA:0000223 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000224 name: quadrate ventral process def: "Process that is the ventral, posteriorly-oriented bony extension of the quadrate." [TAO:wd] xref: ZFA:0001593 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000225 name: lateral crista primordium synonym: "lateral crista primordia" EXACT OMO:0003004 [TAO:0000225] xref: ZFA:0000225 is_a: UBERON:0003240 ! epithelium of lateral semicircular canal is_a: UBERON:0003249 ! epithelium of otic placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000226 name: lateral ethmoid bone def: "Endochondral bone that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] synonym: "lateral ethmoids" EXACT OMO:0003004 [TAO:0000226] synonym: "parethmoïde" EXACT [PSPUB:0000141] synonym: "pleurethmoïde" EXACT [PSPUB:0000134] synonym: "éthmoïde latéral" EXACT [PSPUB:0000164] xref: ZFA:0000226 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:4300111 ! lateral ethmoid element relationship: develops_from UBERON:0006604 ! lamina orbitonasalis relationship: part_of UBERON:0003112 ! olfactory region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000228 name: lateral line primordium synonym: "lateral line primordia" EXACT OMO:0003004 [TAO:0000228] synonym: "llp" EXACT [TAO:0000228] xref: ZFA:0000228 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000230 name: longitudinal hypochordal synonym: "hypochordal longitudinalis" EXACT [] xref: ZFA:0000230 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000232 name: lateral semicircular canal primordium synonym: "lateral semicircular canal primordia" EXACT OMO:0003004 [TAO:0000232] xref: ZFA:0000232 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000233 name: lower oral valve xref: ZFA:0000233 is_a: UBERON:0000479 ! tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000234 name: macula neglecta def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234] xref: ZFA:0000234 is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2000558 ! posterior macula relationship: part_of UBERON:0002518 ! otolith organ property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000235 name: obsolete magnocellular superficial pretectal nucleus xref: ZFA:0000235 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000237 name: obsolete medial forebrain bundle diencephalon xref: ZFA:0000237 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000238 name: olfactory tract linking bulb to ipsilateral ventral telencephalon xref: ZFA:0000238 is_a: UBERON:0002265 ! olfactory tract property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000239 name: mesocoracoid bone def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Meoscoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:wd] synonym: "mesocoracoideum" RELATED [TAO:0000239] xref: ZFA:0000239 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:4300092 ! mesocoracoid element relationship: develops_from UBERON:2001537 ! mesocoracoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000240 name: metapterygoid def: "Endochondral bone that forms the posteriormost element of the palatal complex. It overlies the quadrate and symplectic, posteriorly it articulates with the hyomandibula and anteriorly with the entopterygoid and ectopterygoid. It curves dorsally to form the posteroventral surface of the orbit. The metapterygoid is paired." [ZFIN:curator] synonym: "metapterygoids" EXACT OMO:0003004 [TAO:0000240] xref: ZFA:0000240 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011597 ! bone of upper jaw relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: part_of UBERON:0011085 ! palatoquadrate arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000241 name: midline column xref: ZFA:0000241 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000245 name: nucleus of the descending root xref: ZFA:0000245 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000246 name: obsolete nucleus taeniae xref: ZFA:0000246 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000248 name: magnocellular preoptic nucleus xref: ZFA:0000248 is_a: UBERON:0007251 ! preoptic nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000250 name: opercle def: "Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone." [TAO:GA_TG] comment: The opercle is usually a large, flat bone that may be partially covered by the posterior region of the preopercle. synonym: "opercles" EXACT OMO:0003004 [TAO:0000250] synonym: "operculare" EXACT [TAO:0000250] synonym: "operculum" EXACT [TAO:0000250] xref: ZFA:0000250 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton relationship: part_of UBERON:2000555 ! opercular flap relationship: part_of UBERON:2001875 ! opercular series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000251 name: adipose fin def: "A fin that is fleshy, lacks supporting rays, and is located posterior to the dorsal fin." [TAO:wd] is_a: UBERON:4000162 ! median fin relationship: develops_from UBERON:2000102 ! dorsal fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000256 name: obsolete pars subcommissuralis of V xref: ZFA:0000256 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000259 name: mandibular lateral line def: "One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast. One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] xref: ZFA:0000259 is_a: UBERON:2001470 ! anterior lateral line relationship: part_of UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000261 name: pharyngohyoid xref: ZFA:0000261 is_a: UBERON:0000933 ! chordate pharyngeal muscle relationship: part_of UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000264 name: preopercle def: "Dermal bone that is part of the opercular series and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [TAO:wd] synonym: "preopercles" EXACT OMO:0003004 [TAO:0000264] synonym: "preoperculum" EXACT [TAO:0000264] xref: ZFA:0000264 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton relationship: part_of UBERON:2000555 ! opercular flap relationship: part_of UBERON:2001875 ! opercular series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000265 name: obsolete presumptive dorsal mesoderm def: "Portion of presumptive mesoderm fated to become dorsal mesoderm." [ZFA:0000265] xref: ZFA:0000265 is_obsolete: true [Term] id: UBERON:2000266 name: obsolete pretecto-mamillary tract synonym: "pretectomamillary tract" EXACT [TAO:0000266] xref: ZFA:0000266 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000267 name: primary olfactory fiber layer xref: ZFA:0000267 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002264 ! olfactory bulb property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000268 name: anal fin proximal radial bone def: "Anal fin proximal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "basal radial of anal fin" EXACT [TAO:0000268] synonym: "proximal anal-fin radial" EXACT [TAO:0000268] xref: ZFA:0000268 is_a: UBERON:2001671 ! anal fin radial bone is_a: UBERON:2100268 ! anal fin proximal radial element relationship: develops_from UBERON:2200268 ! anal fin proximal radial cartilage [Term] id: UBERON:2000269 name: inferior ventral flexor xref: ZFA:0000269 is_a: UBERON:0000366 ! flexor muscle relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000271 name: radial bone def: "Radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] comment: Radials may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. synonym: "actinost" RELATED [TAO:0000271] synonym: "radials" EXACT OMO:0003004 [TAO:0000271] xref: ZFA:0000271 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004376 ! fin bone is_a: UBERON:2100271 ! radial element relationship: develops_from UBERON:2200271 ! radial cartilage [Term] id: UBERON:2000274 name: rostral octaval nerve sensory nucleus xref: ZFA:0000274 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000276 name: rostrolateral thalamic nucleus of Butler & Saidel xref: ZFA:0000276 is_a: UBERON:0015234 ! nucleus of ventral thalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000278 name: secondary gustatory nucleus medulla oblongata xref: ZFA:0000278 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000280 name: medial division xref: ZFA:0000280 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000281 name: obsolete hair cell posterior macula def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)." [ZFIN:curator] synonym: "sensory hair cells posterior macula" EXACT OMO:0003004 [TAO:0000281] xref: ZFA:0000281 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000283 name: obsolete sternohyoid xref: ZFA:0000283 is_obsolete: true replaced_by: UBERON:0001107 [Term] id: UBERON:2000284 name: subopercle def: "Dermal bone that is part of the opercular series, lying below the opercle. The subopercle is paired and is typically a thin bone." [TAO:wd] synonym: "subopercles" EXACT OMO:0003004 [TAO:0000284] xref: ZFA:0000284 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton relationship: part_of UBERON:2000555 ! opercular flap relationship: part_of UBERON:2001875 ! opercular series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000285 name: superficial adductor xref: ZFA:0000285 is_a: UBERON:0011145 ! adductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000286 name: superficial lateralis (teleost) xref: ZFA:0000286 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000287 name: superior dorsal flexor xref: ZFA:0000287 is_a: UBERON:0000366 ! flexor muscle relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000288 name: supracarinalis xref: ZFA:0000288 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000289 name: preopercle horizontal limb def: "A dermal bone that is the lower, horizontal portion of the preopercle bone." [TAO:wd] synonym: "preopercle horizontal arm" EXACT [TAO:0000289] synonym: "preopercle lower limb" EXACT [TAO:0000289] xref: ZFA:0001594 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:2000264 ! preopercle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000291 name: medial octavolateralis nucleus def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [ZFA:0000291] xref: ZFA:0000291 is_a: UBERON:2000381 ! lateral line sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000293 name: synencephalon xref: BTO:0006476 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000293 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000294 name: torus lateralis xref: ZFA:0000294 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000296 name: uncrossed tecto-bulbar tract xref: ZFA:0000296 is_a: UBERON:0002164 ! tectobulbar tract relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000297 name: vagal lobe synonym: "nX" RELATED [TAO:0000297] xref: BTO:0006431 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000298 name: vent xref: ZFA:0000298 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000299 name: obsolete ventral entopeduncular nucleus V xref: ZFA:0000299 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000300 name: ventral hypohyal bone def: "Replacement bone that is bilaterally paired and articulates with the ceratohyal bone posteriorly and the dorsal hypohyal bone dorsally." [ZFIN:curator] synonym: "lower hypohyal" EXACT [TAO:0000300] synonym: "ventral hypohyals" EXACT OMO:0003004 [TAO:0000300] synonym: "ventrohyal" EXACT [TAO:0000300] xref: ZFA:0000300 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0011610 ! ceratohyal cartilage relationship: develops_from UBERON:0011612 ! hypohyal cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000302 name: obsolete ventral nucleus is_obsolete: true consider: UBERON:0008993 consider: ZFA:0000302 [Term] id: UBERON:2000305 name: ventral sulcus xref: ZFA:0000305 is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0001898 ! hypothalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000307 name: vestibulolateralis lobe xref: ZFA:0000307 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000309 name: external yolk syncytial layer def: "The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "E-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000309 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000311 name: adductor mandibulae complex xref: ZFA:0000311 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010959 ! craniocervical muscle is_a: UBERON:0011145 ! adductor muscle relationship: develops_from UBERON:0011683 ! adductor mandibulae relationship: part_of UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000313 name: anal inclinator xref: ZFA:0000313 is_a: UBERON:2005276 ! inclinator muscle relationship: part_of UBERON:2001154 ! anal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000315 name: asteriscus synonym: "lagenar otolith" EXACT [TAO:0000315] synonym: "lagenolith" EXACT [TAO:0000315] xref: ZFA:0000315 is_a: UBERON:0002280 ! otolith property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000318 name: brainstem and spinal white matter def: "CNS white matter that is part of the brain stem or spinal cord." [ZFIN] synonym: "brain stem/spinal tracts and commissures" EXACT OMO:0003004 [TAO:0000318] xref: ZFA:0000318 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000319 name: branchiostegal membrane xref: ZFA:0000319 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000321 name: caudal levator xref: ZFA:0000321 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000322 name: caudal octaval nerve sensory nucleus xref: ZFA:0000322 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000324 name: caudal periventricular hypothalamus xref: ZFA:0000324 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000634 ! caudal zone of median tuberal portion of hypothalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000331 name: obsolete commissure infima of Haller xref: ZFA:0000331 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000335 name: crossed tecto-bulbar tract xref: ZFA:0000335 is_a: UBERON:0002164 ! tectobulbar tract relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000336 name: preopercle vertical limb def: "A dermal bone that is the upper, vertical portion of the preopercle bone." [TAO:wd] synonym: "ascending arm of preopercle" EXACT [TAO:0000336] synonym: "preopercle upper limb" EXACT [TAO:0000336] synonym: "preopercle vertical arm" EXACT [TAO:0000336] xref: ZFA:0001595 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:2000264 ! preopercle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000337 name: basioccipital posterodorsal region def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000340 name: obsolete dorsal entopeduncular nucleus xref: ZFA:0000340 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000341 name: dorsal flexor xref: ZFA:0000341 is_a: UBERON:0000366 ! flexor muscle relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000342 name: dorsal inclinator muscle xref: ZFA:0000342 is_a: UBERON:2005276 ! inclinator muscle relationship: part_of UBERON:2000648 ! dorsal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000343 name: obsolete dorsal nucleus of V xref: ZFA:0000343 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000347 name: dorsal zone of median tuberal portion of hypothalamus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000348 name: exoccipital posteroventral region def: "Endochondral bone which is the posterodorsal region of the exoccipital bone." [TAO:wd] xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000349 name: epaxialis xref: ZFA:0000349 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000350 name: epipleural def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [ZFIN:curator] synonym: "epipleurals" EXACT OMO:0003004 [TAO:0000350] synonym: "pleuroïde" EXACT [PSPUB:0000153] synonym: "épipleural" EXACT [PSPUB:0000164] synonym: "épipleure" EXACT [PSPUB:0000133] xref: ZFA:0000350 is_a: UBERON:2000526 ! intermuscular bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000352 name: external cellular layer xref: ZFA:0000352 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002264 ! olfactory bulb property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000356 name: gill raker def: "Dermal bone that is a projection present on the inner surface of a branchial arch." [ZFIN:curator] synonym: "branchiocténie" EXACT [PSPUB:0000133] synonym: "branchiospine" EXACT [PSPUB:0000164] synonym: "gill rakers" EXACT OMO:0003004 [TAO:0000356] synonym: "gill-raker" EXACT [TAO:0000356] synonym: "gillraker" EXACT [TAO:0000356] xref: BTO:0002149 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000356 is_a: UBERON:0008907 ! dermal bone relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000358 name: granular layer corpus cerebelli xref: ZFA:0000358 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000188 ! corpus cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000362 name: hypaxialis xref: ZFA:0000362 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000363 name: hypobranchial bone def: "Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] xref: ZFA:0000363 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001893 ! hypobranchial element relationship: develops_from UBERON:2001522 ! hypobranchial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000364 name: hypural def: "Laterally flattened haemal spine of an ural vertebra that lacks its arch and supports a few principal caudal lepidotrichia distally. A hypural may articulate or fuse with its ural centrum proximally or may lie ventral to the notochord. A hypural is an unpaired median bone that ossifies perichondrally. (Modified from Monod, 1968 and Arratia and Schultze, 1992)." [TAO:GA_TG, ZFIN:curator] synonym: "hyp" EXACT [TAO:0000364] synonym: "hypuralia" EXACT [TAO:0000364] synonym: "hypurals" EXACT OMO:0003004 [TAO:0000364] xref: ZFA:0000364 is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001364 ! hemal spine relationship: part_of UBERON:2002067 ! upper hypural set relationship: part_of UBERON:2002068 ! lower hypural set relationship: part_of UBERON:2002162 ! ural vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000371 name: internal pharyngoclavicularis xref: ZFA:0000371 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000372 name: interpeduncular nucleus medulla oblongata xref: ZFA:0000372 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000373 name: dorsal fin actinotrichium def: "Actinotrichium that is part of the dorsal fin skeleton." [TAO:wd] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:4000168 ! dorsal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000375 name: anal fin actinotrichium def: "Actinotrichium that is part of the anal fin skeleton." [TAO:wd] xref: ZFA:0005398 is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:4000166 ! anal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000376 name: infraorbital alt_id: UBERON:2000489 def: "Dermal bone that is located anterior, ventral or posterior to the eye. Infraorbital bones may or may not contain the infraorbital sensory canal. Infraorbital bones are numbered starting with the anteriormost element of the series." [ZFIN:curator] synonym: "circumorbital series" EXACT [TAO:0000376] synonym: "circumorbitals" EXACT OMO:0003004 [TAO:0000376] synonym: "infraorbital series" RELATED [TAO:0000376] synonym: "infraorbitals" EXACT OMO:0003004 [TAO:0000376] xref: ZFA:0000376 is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010321 ! skeletal element of eye region relationship: part_of UBERON:0001697 ! orbit of skull relationship: part_of UBERON:2001709 ! infraorbital series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000379 name: obsolete lateral forebrain bundle diencephalon xref: ZFA:0000379 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000381 name: lateral line sensory nucleus xref: ZFA:0000381 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000384 name: levator arcus palatini def: "Jaw muscle that connects the sphenotic to the metapterygoid and hyomandibula and promotes the elevation/abduction of the suspensorium." [PMID:18307809] xref: ZFA:0000384 is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000387 name: obsolete nucleus motorius of nervi vagi property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0011778 [Term] id: UBERON:2000388 name: medial caudal lobe xref: ZFA:0000388 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000307 ! vestibulolateralis lobe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000389 name: medial funicular nucleus medulla oblongata xref: ZFA:0000389 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000390 name: medial preglomerular nucleus xref: ZFA:0000390 is_a: UBERON:2002226 ! preglomerular nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000391 name: obsolete medial zone of D xref: ZFA:0000391 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000392 name: median tuberal portion def: "Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] xref: ZFA:0000392 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001898 ! hypothalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000394 name: molecular layer corpus cerebelli xref: ZFA:0000394 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000188 ! corpus cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000395 name: obsolete muscle pioneer somite 2 synonym: "muscle pioneers somite 2" EXACT OMO:0003004 [TAO:0000395] xref: ZFA:0000395 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000397 name: nucleus subglomerulosis xref: ZFA:0000397 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000398 name: nucleus isthmi xref: ZFA:0000398 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000399 name: secondary gustatory nucleus trigeminal nuclei xref: ZFA:0000399 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000401 name: octaval nerve sensory nucleus comment: TO DO: see DOI: 10.1002/cne.902660403 for next steps in defining different octaval nerve nuclei. xref: ZFA:0000401 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000406 name: obsolete parvocellular superficial pretectal nucleus xref: ZFA:0000406 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000408 name: periventricular nucleus of caudal tuberculum xref: ZFA:0000408 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000410 name: postcleithrum def: "Dermal bone placed postero-medially to the supracleithrum and/or cleithrum." [TAO:GA_TG, TAO:wd] comment: Commonly, the postcleithra form a bilateral series including one to three flat, thin postcleithra of variable shapes (in teleosts). Basal teleosts may have a series up to seven postcleithra (see Arratia 1984 and 1997 and references herein). synonym: "métacleithrum" EXACT [PSPUB:0000131] synonym: "métaclithrum" EXACT [PSPUB:0000131] synonym: "paraclithrum" EXACT [PSPUB:0000143] synonym: "postclavicle" EXACT [TAO:0000410] synonym: "postcleithra" EXACT OMO:0003004 [TAO:0000410] synonym: "postcleithrum" EXACT [PSPUB:0000164] xref: ZFA:0000410 is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000411 name: posterior crista primordium synonym: "posterior crista primordia" EXACT OMO:0003004 [TAO:0000411] xref: ZFA:0000411 is_a: UBERON:0003239 ! epithelium of posterior semicircular canal is_a: UBERON:0003249 ! epithelium of otic placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000412 name: posterior semicircular canal primordium synonym: "posterior semicircular canal primordia" EXACT OMO:0003004 [TAO:0000412] xref: ZFA:0000412 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000414 name: presumptive cephalic mesoderm xref: ZFA:0000414 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000926 ! mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000419 name: pterosphenoid def: "Endochondral bone that sutures with the orbitosphenoid anteriorly, the frontal bone dorsally and the sphenotic and prootic posteriorly. The pterosphenoid forms part of the orbitosphenoid region. The pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. The pterosphenoid is a paired bone." [ZFIN:curator] synonym: "alisphenoid" EXACT [TAO:0000419] synonym: "pterosphenoids" EXACT OMO:0003004 [TAO:0000419] xref: ZFA:0000419 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:2001515 ! taenia marginalis posterior relationship: part_of UBERON:0003111 ! sphenoid region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000422 name: retroarticular def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [ZFIN:curator] xref: ZFA:0000422 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw relationship: develops_from UBERON:0003107 ! Meckel's cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000424 name: opercular lateral line def: "One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] xref: ZFA:0000424 is_a: UBERON:2001470 ! anterior lateral line relationship: part_of UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000425 name: anterior lateral line nerve def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [ZFIN:curator] synonym: "rostral lateral line nerve" EXACT [TAO:0000425] xref: ZFA:0000425 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2001468 ! anterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000426 name: rostral parvocellular preoptic nucleus xref: ZFA:0000426 is_a: UBERON:0007251 ! preoptic nucleus is_a: UBERON:2002219 ! parvocellular preoptic nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000429 name: scaphium def: "Neural arch and Weberian ossicle that is reduced in size relative to other neural arches. Scaphium has a process which articulates with the first centrum." [ZFIN:curator] synonym: "second Weberian ossicle" EXACT [TAO:0000429] synonym: "Weberian ossicle 2" EXACT [TAO:0000429] xref: ZFA:0000429 is_a: UBERON:0003861 ! neural arch is_a: UBERON:0005814 ! arch of atlas property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000430 name: secondary gustatory tract xref: ZFA:0000430 is_a: UBERON:0014649 ! white matter of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000437 name: caudal fin actinotrichium def: "Actinotrichium that is part of the caudal fin skeleton." [TAO:wd] xref: ZFA:0005424 is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000438 name: parhypural alt_id: UBERON:2000562 def: "Haemal spine of last hemal arch that is pierced by the haemal canal through which the caudal vessels pass or haemal arch of preural centrum 1. Its distal part commonly supports lepidotrichia. The parhypural is an unpaired median haemal spine." [TAO:GA_TG] comment: The parhypural is frequently confused with the arch plus spine of preural centrum 1. synonym: "hemal spine of preural centrum 1" EXACT [TAO:0000438] synonym: "parahypural" EXACT [TAO:0000438] synonym: "parhypural" EXACT [PSPUB:0000164] synonym: "parhypural hypaxonal" EXACT [PSPUB:0000133] synonym: "parhyural" EXACT [TAO:0000438] synonym: "phy" EXACT [TAO:0000438] synonym: "prohypural" EXACT [PSPUB:0000143] xref: ZFA:0000438 is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001364 ! hemal spine relationship: part_of UBERON:2000557 ! preural 1 vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000439 name: superficial pelvic abductor xref: ZFA:0000439 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014795 ! pelvic appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000440 name: superior raphe nucleus synonym: "anterior raphe nucleus" EXACT [TAO:0000440] xref: ZFA:0000440 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0004684 ! raphe nuclei property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000442 name: supraneural bone def: "Endochondral bone that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [ZFIN:curator] synonym: "axonoste libre" EXACT [PSPUB:0000164] synonym: "predorsal" EXACT [TAO:0000442] synonym: "predorsal bone" EXACT [TAO:0000442] synonym: "pseudaxonoste" EXACT [PSPUB:0000156] synonym: "sn" EXACT [TAO:0000442] synonym: "supraneural" EXACT [PSPUB:0000164] synonym: "supraneurals" EXACT OMO:0003004 [TAO:0000442] xref: ZFA:0000442 is_a: UBERON:0001474 ! bone element is_a: UBERON:4300035 ! supraneural element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000448 name: tertiary gustatory nucleus xref: ZFA:0000448 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000449 name: torus longitudinalis xref: ZFA:0000449 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002314 ! midbrain tectum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000451 name: upper oral valve xref: ZFA:0000451 is_a: UBERON:0000479 ! tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000452 name: urohyal def: "Tendon bone that forms in the tendon of the sternohyoid muscles ventral to the anterior end of copula 1. The urohyal associates by ligaments to the ventral hypohyals or it articulates with the ventral hypohyals. The urohyal is an unpaired bone." [TAO:GA_TG, TAO:wd] comment: The urohyal forms as a single ossification in most teleosts, or as a paired ossification. synonym: "clidoste" EXACT [PSPUB:0000140] synonym: "interclaviculaire" EXACT [PSPUB:0000143] synonym: "jugulaire" EXACT [PSPUB:0000109] synonym: "parurohyal" EXACT [TAO:Arratia_Schultze_1990] synonym: "urohyal" EXACT [PSPUB:0000164] xref: ZFA:0000452 is_a: UBERON:0008907 ! dermal bone relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000454 name: ventral accessory optic nucleus xref: ZFA:0000454 is_a: UBERON:0035566 ! central pretectal nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000455 name: ventral flexor xref: ZFA:0000455 is_a: UBERON:0000366 ! flexor muscle relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000456 name: obsolete ventral nucleus of V xref: ZFA:0000456 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000459 name: ventromedial thalamic nucleus xref: ZFA:0000459 is_a: UBERON:0015234 ! nucleus of ventral thalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000460 name: adipose fin actinotrichium def: "Actinotrichium that is part of the adipose fin." [TAO:wd] is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:4500004 ! adipose fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000461 name: Weberian ossicle def: "Bone that is an element associated with a Weberian vertebra." [ZFIN:curator] synonym: "Weberian ossicles" EXACT OMO:0003004 [TAO:0000461] xref: ZFA:0000461 is_a: UBERON:0000491 ! solid compound organ is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:2001871 ! Weberian ossicle set property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000462 name: abductor hyohyoid xref: ZFA:0000462 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000463 name: obsolete adductor comment: false property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: UBERON:0011145 [Term] id: UBERON:2000464 name: otic lateral line def: "One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] xref: ZFA:0000464 is_a: UBERON:2001470 ! anterior lateral line relationship: part_of UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000465 name: adductor operculi xref: ZFA:0000465 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000466 name: anal depressor xref: ZFA:0000466 is_a: UBERON:2005270 ! depressor muscle relationship: part_of UBERON:2001154 ! anal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000468 name: anterior crista primordium synonym: "anterior crista primordia" EXACT OMO:0003004 [TAO:0000468] xref: ZFA:0000468 is_a: UBERON:0001048 ! primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000469 name: anterior semicircular canal primordium synonym: "anterior semicircular canal primordia" EXACT OMO:0003004 [TAO:0000469] xref: ZFA:0000469 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000474 name: intercalar def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [ZFIN:curator] synonym: "opisthotic" RELATED [TAO:0000474] xref: ZFA:0000474 is_a: UBERON:0007842 ! membrane bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003110 ! otic region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000475 name: paraventricular organ xref: ZFA:0000475 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000476 name: branchiostegal ray def: "Dermal bone that is a flattened element that supports the branchiostegal membrane. Branchiostegal rays are generally present in a series articulating ventrally or ventro-medially with the anterior and posterior ceratobranchials whereas the most posterior ray articulates with the subopercle. The branchiostegal ray is paired." [ZFIN:curator] comment: Although the branchiostegals are articulated or attached to the hyoid arch, they belong to the opercular series. Branchiostegal rays are of variable shape and number and their homology is problematic. Usually they are numbered from anterior to posterior elements, instead from posterior to anteriorly considering that the last element of the series is consistently associated to the subopercle. For a survey of branchiostegal rays see Mc Allister (1968). synonym: "branchiostegal rays" EXACT OMO:0003004 [TAO:0000476] xref: ZFA:0000476 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton relationship: part_of UBERON:2001875 ! opercular series relationship: part_of UBERON:2002101 ! branchiostegal ray series relationship: part_of UBERON:4300150 ! gill membrane property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000479 name: caudal mesencephalo-cerebellar tract xref: ZFA:0000479 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000480 name: caudal octavolateralis nucleus def: "Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] xref: ZFA:0000480 is_a: UBERON:2000381 ! lateral line sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000481 name: caudal preglomerular nucleus xref: ZFA:0000481 is_a: UBERON:2002226 ! preglomerular nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000482 name: caudal tuberal nucleus synonym: "posterior tuberal nucleus" EXACT [TAO:0000482] xref: ZFA:0000482 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000484 name: celiacomesenteric artery xref: ZFA:0000484 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000485 name: central nucleus inferior lobe synonym: "central nucleus inferior lobes" EXACT OMO:0003004 [TAO:0000485] xref: ZFA:0000485 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000165 ! inferior lobe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000487 name: obsolete central zone of D xref: ZFA:0000487 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000488 name: ceratobranchial bone def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches." [ZFIN:curator] synonym: "ceratobranchials" EXACT OMO:0003004 [TAO:0000488] xref: ZFA:0000488 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001898 ! ceratobranchial element relationship: develops_from UBERON:2001516 ! ceratobranchial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000491 name: obsolete commissure of the caudal tuberculum xref: ZFA:0000491 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000492 name: coracoradialis xref: ZFA:0000492 is_a: UBERON:0014794 ! pectoral appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000493 name: obsolete decussation of medial funicular nucleus xref: ZFA:0000493 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000495 name: infraorbital 5 def: "Infraorbital that is the fifth bone of the infraorbital series." [ZFIN:curator] synonym: "dermosphenotic" RELATED [TAO:0000495] xref: ZFA:0000495 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000497 name: pelvic adductor profundus xref: ZFA:0000497 is_a: UBERON:0011144 ! adductor muscle of hip is_a: UBERON:0014795 ! pelvic appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000498 name: dilatator operculi def: "Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction." [https://doi.org/10.1006/dbio.2002.0701, https://doi.org/10.1186/1471-213X-8-24, ZFA:0000498] synonym: "dilator operculi" RELATED [] xref: ZFA:0000498 is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000499 name: dorsal arrector xref: ZFA:0000499 is_a: UBERON:0014794 ! pectoral appendage muscle is_a: UBERON:2002147 ! arrector muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000500 name: dorsal erector muscle xref: ZFA:0000500 is_a: UBERON:2005267 ! erector muscle relationship: part_of UBERON:2000648 ! dorsal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000502 name: dorsal motor nucleus trigeminal nerve synonym: "motor nucleus V" RELATED [TAO:0000502] synonym: "nV" RELATED [TAO:0000502] xref: ZFA:0000502 is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000503 name: dorsal oblique branchial muscle synonym: "dorsal oblique branchial muscles" EXACT OMO:0003004 [TAO:0000503] synonym: "obliquues dorsalis" EXACT [https://repository.si.edu/handle/10088/5206] synonym: "obliquus dorsalis" EXACT [] {comment="https://doi.org/10.1093/sysbio/sys060"} xref: ZFA:0000503 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000504 name: dorsal retractor xref: ZFA:0000504 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000506 name: obsolete dorsal zone of D xref: ZFA:0000506 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000507 name: epineural def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g., Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [ZFIN:curator] xref: ZFA:0000507 is_a: UBERON:2000526 ! intermuscular bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000508 name: pelvic fin radial bone def: "Pelvic fin radial element that is composed of bone tissue." [OBOL:automatic] synonym: "pelvic actinost" EXACT [TAO:0000508] synonym: "pelvic radial" EXACT [TAO:0000508] xref: ZFA:0000508 is_a: UBERON:0010742 ! bone of pelvic complex is_a: UBERON:1500006 ! paired fin radial bone is_a: UBERON:2100508 ! pelvic fin radial element relationship: develops_from UBERON:2001538 ! pelvic radial cartilage [Term] id: UBERON:2000510 name: external levatores xref: ZFA:0000510 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000512 name: facial lobe xref: ZFA:0000512 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000513 name: obsolete fast muscle cell somite 1 synonym: "fast muscle cells somite 1" EXACT OMO:0003004 [TAO:0000513] xref: ZFA:0000513 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000516 name: periventricular grey zone xref: ZFA:0000516 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001945 ! superior colliculus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000517 name: glossopharyngeal lobe xref: ZFA:0000517 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001896 ! medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000520 name: obsolete horizontal commissure xref: ZFA:0000520 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000522 name: inferior hyohyoid xref: ZFA:0000522 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000523 name: inferior reticular formation xref: ZFA:0000523 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:2000542 ! medial column property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000525 name: intercalarium def: "Neural arch and Weberian ossicle that has been modified in shape relative to other neural arches. Intercalarium includes three parts: an anterolateral process (the manubrium) which is embedded in the interossicular ligament and the ascending and articulating processes." [ZFIN:curator] synonym: "third Weberian ossicle" EXACT [TAO:0000525] synonym: "Weberian ossicle 3" EXACT [TAO:0000525] xref: ZFA:0000525 is_a: UBERON:0000218 ! vertebral arch of axis is_a: UBERON:2000461 ! Weberian ossicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000526 name: intermuscular bone def: "Axial bone which is a segmental ossification that forms in the myoseptum." [ZFIN:curator] comment: Intermuscular bones are found in teleosts fishes only. synonym: "métamyoste" EXACT [PSPUB:0000147] synonym: "métaxymyoste" EXACT [PSPUB:0000153] synonym: "os intermusculaire" EXACT [PSPUB:0000164] xref: ZFA:0000526 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000527 name: pharyngobranchial bone def: "Endochondral bone of the branchial arches located medial to the epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial" EXACT [TAO:0000527] synonym: "infrapharyngobranchial bone" EXACT [] synonym: "pharyngobranchials" EXACT OMO:0003004 [TAO:0000527] xref: ZFA:0000527 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001909 ! pharyngobranchial element relationship: develops_from UBERON:2001533 ! pharyngobranchial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000528 name: interradialis xref: ZFA:0000528 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000530 name: lapillus synonym: "utricular otolith" EXACT [TAO:0000530] synonym: "utriculith" EXACT [TAO:0000530] xref: ZFA:0000530 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000532 name: lateral division xref: ZFA:0000532 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000534 name: obsolete lateral longitudinal fasciculus alt_id: UBERON:2000198 synonym: "lateral longitundinal fasciculus" EXACT [TAO:0000534] xref: ZFA:0000534 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000536 name: obsolete lateral zone of D xref: ZFA:0000536 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000540 name: magnocellular octaval nucleus xref: ZFA:0000540 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000541 name: obsolete marginal blastomere def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] synonym: "marginal blastomeres" EXACT OMO:0003004 [TAO:0000541] xref: ZFA:0000541 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: ZFA:0000541 [Term] id: UBERON:2000542 name: medial column xref: ZFA:0000542 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000544 name: pectoral fin actinotrichium def: "Actinotrichium that is part of the pectoral fin." [TAO:wd] xref: ZFA:0005545 is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:0010710 ! pectoral fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000549 name: posttemporal def: "Dermal bone of the secondary pectoral girdle that attaches the girdle to the skull. Its dorsal process attaches to the epiotic or epioccipital, the ventral process to the intercalar and the body articulates with the supracleithrum. The postotic sensory canal or lateral line runs within or lateral to bone." [TAO:GA_TG] comment: The posttemporal is commonly a Y-shaped bone with two elongate processes. The dorsal process may be equal or longer than the ventral process or the opposite. The ventral process may be absent in some teleosts. synonym: "post-temporal" EXACT [TAO:0000549] synonym: "postemporal" EXACT [TAO:0000549] synonym: "posttemporale" EXACT [TAO:0000549] synonym: "suprascapula" RELATED [TAO:0000549] xref: ZFA:0000549 is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003110 ! otic region relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000551 name: nucleus lateralis valvulae def: "Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem." [ZFA:0000551, ZFIN:ZDB-PUB-100601-20, ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000551 xref: ZFA:0000551 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000555 name: opercular flap synonym: "gill cover" EXACT [TAO:0000555] synonym: "opercular apparatus" EXACT [TAO:0000555] synonym: "operculum" RELATED [TAO:0000555] xref: ZFA:0000555 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000557 name: preural 1 vertebra def: "Last caudal vertebra identified as the point at which the caudal vessels bifurcate, leaving the protection of the haemal arches of the caudal vertebrae and running laterally to the hypurals. This vertebra bears, commonly, a well-developed haemal arch and its spine (parhypural)." [TAO:GA_TG] comment: The haemal arch may be fused to the centrum or not. In contrast, the neural arch and spine may be well developed, or rudimentary or absent in different teleost subgroups. synonym: "penultimate vertebra" EXACT [TAO:0000557] synonym: "preural centrum 1" EXACT [TAO:0000557] synonym: "pu1" EXACT [TAO:0000557] synonym: "second last vertebra" EXACT [TAO:0000557] xref: ZFA:0000557 is_a: UBERON:2000734 ! preural vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000558 name: posterior macula def: "Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)." [ZFIN:curator] synonym: "pm" EXACT [TAO:0000558] synonym: "posteromedial macula" EXACT [TAO:0000558] xref: ZFA:0000558 is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2001097 ! immature posterior macula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000564 name: pelvic abductor profundus xref: ZFA:0000564 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014795 ! pelvic appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000571 name: obsolete presumptive telencephalon xref: ZFA:0000571 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000573 name: internal cellular layer xref: ZFA:0000573 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002264 ! olfactory bulb property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000576 name: pterotic def: "Endochondral bone that articulates with the autosphenotic anteriorly, the parietal dorsomedially, the prootic ventrally (and the intercalar occasionally), and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. The pterotic is paired." [ZFIN:curator] synonym: "autopterotic" EXACT [TAO:0000576] xref: ZFA:0000576 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule relationship: part_of UBERON:0003110 ! otic region relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000579 name: rostral mesencephalo-cerebellar tract xref: ZFA:0000579 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000580 name: rostral preglomerular nucleus xref: ZFA:0000580 is_a: UBERON:2002226 ! preglomerular nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000581 name: rostral tuberal nucleus synonym: "anterior tuberal nucleus" EXACT [TAO:0000581] xref: ZFA:0000581 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000707 ! ventral zone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000582 name: saccus dorsalis xref: ZFA:0000582 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001899 ! epithalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000585 name: kinethmoid cartilage def: "Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid." [ZFIN:curator] synonym: "kinethmoideum cartilage" EXACT [TAO:0000585] xref: ZFA:0000585 is_a: UBERON:0003932 ! cartilage element of chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000586 name: preural 2 vertebra def: "Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] synonym: "antepenultimate vertebra" EXACT [TAO:0000586] synonym: "preural centrum 2" EXACT [TAO:0000586] synonym: "pu2" EXACT [TAO:0000586] synonym: "third last vertebra" EXACT [TAO:0000586] xref: ZFA:0000586 is_a: UBERON:2000734 ! preural vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000587 name: sphenotic def: "Endochondral bone that sutures with the pterosphenoid anteriorly, the prootic ventrally, the frontal bone dorso-medially, and the pterotic dorso-posteriorly. Occasionally the sphenotic sutures with the parietal bone. The sphenotic separates the orbital from the otic region. The sphenotic bears a large antero-lateral or lateral or ventro-lateral process that borders the postero-dorsal margin of the orbit. The sphenotic is a paired bone." [ZFIN:curator] comment: The lower edge of the sphenotic may contribute to the hyomandibular facet depending on the fish group. synonym: "autosphenotic" EXACT [TAO:0000587] synonym: "sphenotics" EXACT OMO:0003004 [TAO:0000587] xref: ZFA:0000587 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0006605 ! tectum synoticum relationship: develops_from UBERON:2001515 ! taenia marginalis posterior relationship: part_of UBERON:0003110 ! otic region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000589 name: sulcus ypsiloniformis xref: ZFA:0000589 is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0000203 ! pallium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000592 name: superficial pelvic adductor xref: ZFA:0000592 is_a: UBERON:0011144 ! adductor muscle of hip is_a: UBERON:0014795 ! pelvic appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000593 name: superior reticular formation medial column xref: ZFA:0000593 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:2000542 ! medial column property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000594 name: supracleithrum def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:wd] comment: The dorsalmost postcleithrum or postcleithrum 1 may lie medial to the ventral part of the supracleithrum. The postotic canal or lateral line may run close to the dorsal margin or in the upper third or in the lowest third of the bone depending on the fish group. synonym: "hypercleithrum" EXACT [PSPUB:0000131] synonym: "supracleithra" EXACT OMO:0003004 [TAO:0000594] synonym: "supracleithrum" EXACT [PSPUB:0000164] synonym: "épiclithrum" EXACT [PSPUB:0000132] xref: ZFA:0000594 is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000596 name: pelvic fin actinotrichium def: "Actinotrichium that is part of the pelvic fin." [TAO:wd] xref: ZFA:0005546 is_a: UBERON:2000089 ! actinotrichium relationship: part_of UBERON:0010711 ! pelvic fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000597 name: obsolete telencephalic tracts comment: Obsoleted as it is redundant with 'white matter of telencephalon'. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/3160" xsd:anyURI is_obsolete: true replaced_by: UBERON:0011299 [Term] id: UBERON:2000599 name: torus semicircularis xref: ZFA:0000599 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002314 ! midbrain tectum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000601 name: obsolete pretectal periventricular nucleus xref: ZFA:0000601 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000602 name: uroneural def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone." [TAO:Arratia_Schultze_1992, TAO:Patterson_1968] comment: The presence of modified ural neural arches or uroneurals is interpreted as a synapomorphy of Teleostei. Uroneurals present some modifications in certain teleost subgroups and such specialized structures are named pleurostyle (e.g., ostarioclupeomorphs) and stegural (e.g., salmonids). synonym: "uroneurals" EXACT OMO:0003004 [TAO:0000602] xref: ZFA:0000602 is_a: UBERON:0003861 ! neural arch is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000603 name: valvula cerebelli def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFA:0000603, ZFA:curator] synonym: "valvula" RELATED [ZFA:0000603] synonym: "valvula cerebellum" EXACT OMO:0003004 [TAO:0000603, ZFA:0000603] xref: TAO:0000603 xref: ZFA:0000603 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 {source="ZFA"} ! cerebellum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000606 name: obsolete ventral oblique branchial muscle comment: removed axiom: part_of some 'pharyngeal muscle'\nno information about this class, may be zebrafish specific nomenclature. synonym: "ventral oblique branchial muscles" EXACT OMO:0003004 [TAO:0000606] xref: ZFA:0000606 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000607 name: obsolete ventral rhombencephalic commissure brain stem xref: ZFA:0000607 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000608 name: ventral transverse xref: ZFA:0000608 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000609 name: ventrolateral nucleus xref: ZFA:0000609 is_a: UBERON:0011214 ! nucleus of midbrain tectum relationship: part_of UBERON:2000599 ! torus semicircularis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000610 name: vertical myoseptum def: "Connective tissue partitions developing between the myotomes. Kimmel et al, 1995." [ZFIN:curator] synonym: "transverse myoseptum" EXACT [TAO:0000610] xref: ZFA:0000610 is_a: UBERON:2001089 ! myoseptum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000611 name: visceromotor column xref: ZFA:0000611 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001896 ! medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000614 name: abductor profundus xref: ZFA:0000614 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000615 name: adductor arcus palatini xref: ZFA:0000615 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000616 name: adductor profundus xref: ZFA:0000616 is_a: UBERON:0011145 ! adductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000617 name: anal erector xref: ZFA:0000617 is_a: UBERON:2005267 ! erector muscle relationship: part_of UBERON:2001154 ! anal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000618 name: obsolete ansulate commissure def: "A brainstem commissure that contains major crossed descending projections from both tectal lobes." [http://www.ncbi.nlm.nih.gov/pubmed/3496554] comment: This class is present in fishes and amphibians. xref: ZFA:0000618 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000620 name: autopalatine def: "Endochondral bone that is part of the antero-lateral region of the palate. Commonly, it articulates with the maxilla anterolaterally and with the ethmoidal region medially. It may also articulate with the dermopalatine ventro-laterally and with the entopterygoid posteriorly. The autopalatine is paired." [ZFIN:curator] comment: The cartilaginous autopalatine forms from the anterior palatoquadrate arch. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms). synonym: "palatine bone" RELATED [TAO:0000620] synonym: "palatines" EXACT OMO:0003004 [TAO:0000620] xref: ZFA:0000620 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011597 ! bone of upper jaw relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: part_of UBERON:0011085 ! palatoquadrate arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000622 name: barbel def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [ZFIN:curator] synonym: "barbels" EXACT OMO:0003004 [TAO:0000622] synonym: "barble" EXACT [TAO:0000622] xref: ZFA:0000622 is_a: UBERON:3000972 ! head external integument structure relationship: develops_from UBERON:2005119 ! barbel primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000623 name: basipterygium bone def: "Basipterygium element that is composed of bone tissue." [OBOL:automatic] synonym: "basipterygia" EXACT OMO:0003004 [TAO:0000623] synonym: "basipterygium ischiatique" EXACT [PSPUB:0000145] synonym: "os pelvien" EXACT [PSPUB:0000164] synonym: "pelvic bone" RELATED [TAO:0000623] synonym: "pelvic plate" EXACT [] synonym: "pubic plate" EXACT [] xref: ZFA:0000623 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:2100623 ! basipterygium element relationship: develops_from UBERON:2001539 ! basipterygium cartilage [Term] id: UBERON:2000624 name: obsolete brachium conjunctivum synonym: "brachium conjunctivium" EXACT [TAO:0000624] xref: ZFA:0000624 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0002150 [Term] id: UBERON:2000626 name: obsolete bulbo-spinal tract xref: ZFA:0000626 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000627 name: posterior ceratohyal def: "Replacement bone that is bilaterally paired and articulates anteriorly with the anterior ceratohyal." [ZFIN:curator] comment: Posterohyal is used in Rapp Py Daniel (1997). synonym: "caudal ceratohyal" EXACT [TAO:0000627] synonym: "epihyal" EXACT [TAO:0000627] synonym: "posterohyal" EXACT [TAO:0000627] synonym: "proximal ceratohyal" RELATED [TAO:0000627] xref: ZFA:0000627 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0011610 ! ceratohyal cartilage relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000628 name: caudal fin musculature xref: ZFA:0000628 is_a: UBERON:0007271 ! appendage musculature relationship: part_of UBERON:4000164 ! caudal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000629 name: caudal motor nucleus of abducens def: "Caudal part of the abducens nucleus that mediates motor function." [PHENOSCAPE] xref: ZFA:0000629 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002682 ! abducens nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000630 name: caudal parvocellular preoptic nucleus xref: ZFA:0000630 is_a: UBERON:0007251 ! preoptic nucleus is_a: UBERON:2002219 ! parvocellular preoptic nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000633 name: caudal tuberculum synonym: "posterior tubercle" EXACT [TAO:0000633] synonym: "posterior tuberculum" EXACT [TAO:0000633] xref: ZFA:0000633 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000634 name: caudal zone of median tuberal portion of hypothalamus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000635 name: obsolete central pretectal nucleus xref: ZFA:0000635 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000636 name: cerebellar crest xref: ZFA:0000636 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000291 ! medial octavolateralis nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000637 name: claustrum cartilage def: "Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum cartilage is bilaterally paired." [ZFIN:curator] synonym: "first Weberian ossicle" RELATED [TAO:0000637] xref: ZFA:0000637 is_a: UBERON:2001457 ! postcranial axial cartilage is_a: UBERON:4300190 ! claustrum element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000638 name: commissura rostral, pars dorsalis def: "Part of the anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali." [ISBN:3764351209] xref: ZFA:0000638 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0000935 ! anterior commissure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000639 name: commissure of the secondary gustatory nuclei xref: ZFA:0000639 is_a: UBERON:0002317 ! white matter of cerebellum relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000642 name: obsolete decussation of the medial octavolateralis nucleus xref: ZFA:0000642 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000643 name: rostral cerebellar tract xref: ZFA:0000643 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000644 name: obsolete dental plate comment: obsoleted because was artificially generalized from zebrafish, wherein it is currently obsolete. xref: ZFA:0000644 is_obsolete: true [Term] id: UBERON:2000645 name: descending octaval nucleus xref: ZFA:0000645 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000646 name: anal fin distal radial bone def: "Anal fin distal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "distal anal fin radial" EXACT [TAO:0000646] xref: ZFA:0000646 is_a: UBERON:2001671 ! anal fin radial bone is_a: UBERON:2100646 ! anal fin distal radial element relationship: develops_from UBERON:2200646 ! anal fin distal radial cartilage [Term] id: UBERON:2000647 name: dorsal caudal thalamic nucleus synonym: "dorsal posterior thalamic nucleus" EXACT [TAO:0000647] xref: ZFA:0000647 is_a: UBERON:0015233 ! nucleus of dorsal thalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000648 name: dorsal fin musculature def: "Musculature that is part of the dorsal fin." [ZFA:0000648, ZFA:curator] subset: efo_slim xref: EFO:0003551 xref: TAO:0000648 xref: ZFA:0000648 is_a: UBERON:0004469 ! musculature of back is_a: UBERON:0007271 ! appendage musculature relationship: part_of UBERON:0003097 ! dorsal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000651 name: dorsal pelvic arrector xref: ZFA:0000651 is_a: UBERON:0014795 ! pelvic appendage muscle is_a: UBERON:2002147 ! arrector muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000654 name: rostral motor nucleus of abducens def: "Rostral part of the abducens nucleus that mediates motor function." [PHENOSCAPE] xref: ZFA:0000654 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002682 ! abducens nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000655 name: obsolete dorsomedial optic tract comment: removed axiom: white matter and part_of some 'optic tract'.\nNot clear that directional labels for optic tract parts are consistent across taxa. To be reviewed. xref: ZFA:0000655 is_obsolete: true [Term] id: UBERON:2000657 name: entopterygoid def: "Dermal bone that forms the ventro-medial part of the palate and the antero-ventral and ventral wall of the orbit. The entopterygoid is a paired bone." [TAO:GA_TG] synonym: "endopterygoid bone" EXACT [] synonym: "mesopterygoid" EXACT [TAO:0000657] xref: ZFA:0000657 is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011085 ! palatoquadrate arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000658 name: epibranchial bone def: "Dorsal branchial arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] synonym: "epibranchial bones" EXACT OMO:0003004 [TAO:0000658] xref: ZFA:0000658 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001904 ! epibranchial element relationship: develops_from UBERON:2001527 ! epibranchial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000660 name: epural def: "A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone." [DOI:10.1002/jmor.1052140209] comment: The origin of the epurals is unclear, three hypotheses have been proposed: 1) The epurals are modified radials or dorsal radials; 2) the epurals are detached neural spines and may support fin rays; and 3) the epurals are a serial homologue of the supraneuralia. At least in teleosts the epural is a detached neural spine. For details see Schultze and Arratia (1989) and Arratia and Schultze (1992). synonym: "epiural" EXACT [TAO:0000660] synonym: "epiural apophysis" EXACT [TAO:0000660] synonym: "epurals" EXACT OMO:0003004 [TAO:0000660] synonym: "éphural" EXACT [PSPUB:0000138] synonym: "épural" EXACT [PSPUB:0000164] xref: ZFA:0000660 is_a: UBERON:0001076 ! neural spine relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000662 name: external pharyngoclavicularis xref: ZFA:0000662 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000663 name: extrascapula alt_id: UBERON:2001413 def: "Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones." [TAO:GA_TG, TAO:wd] comment: When it is present, the paired series of extrascapular bones may include one pair or two pairs or two pairs plus a median one. The most lateral is named lateral extrascapula and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur. The medial and median extrascapulars carry the extrascapular or supratemporal canal. synonym: "extrascapular" EXACT [TAO:0000663] synonym: "extrascapular bone" EXACT [TAO:0000663] synonym: "scale bone" EXACT [TAO:0000663] synonym: "supratemporal" RELATED [TAO:0000663] synonym: "tabular" RELATED [TAO:Harrington_1955, TAO:Weitzman_1962] xref: ZFA:0000663 is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000666 name: filamental artery synonym: "filamental arteries" EXACT OMO:0003004 [TAO:0000666] xref: ZFA:0000666 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0007303 ! pharyngeal vasculature relationship: part_of UBERON:0009120 ! gill filament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000673 name: hypobranchial artery def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.sogai et al. 2001." [ZFIN:curator] synonym: "HA" EXACT [TAO:0000673] xref: ZFA:0000673 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000674 name: interopercle def: "Dermal bone that is part of the opercular series. It is located ventro-medially to the preopercle and anterior to the subopercle. It is joined to the posterior part of the lower jaw (retroarticular) by a ligament. The interopercle is paired." [TAO:wd] synonym: "interopercles" EXACT OMO:0003004 [TAO:0000674] xref: ZFA:0000674 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton relationship: part_of UBERON:2000555 ! opercular flap relationship: part_of UBERON:2001875 ! opercular series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000676 name: sagitta synonym: "saccular otolith" EXACT [TAO:0000676] synonym: "sacculith" EXACT [TAO:0000676] xref: ZFA:0000676 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000677 name: segmental intercostal artery subset: efo_slim synonym: "segmental intercostal arteries" EXACT OMO:0003004 [TAO:0000677] xref: EFO:0003558 xref: TAO:0000677 xref: ZFA:0000677 is_a: UBERON:0005612 ! intercostal artery [Term] id: UBERON:2000678 name: obsolete hair cell anterior macula def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)." [ZFIN:curator] synonym: "sensory hair cells anterior macula" EXACT OMO:0003004 [TAO:0000678] xref: ZFA:0000678 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000685 name: superficial abductor xref: ZFA:0000685 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000687 name: superficial pretectum xref: ZFA:0000687 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001944 ! pretectal region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000688 name: obsolete olfactory support cell synonym: "support cells" EXACT OMO:0003004 [TAO:0000688] xref: ZFA:0000688 is_obsolete: true replaced_by: CL:0000853 [Term] id: UBERON:2000689 name: obsolete supracommissural nucleus of V xref: ZFA:0000689 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000690 name: obsolete supraoptic commissure xref: ZFA:0000690 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000691 name: supraorbital bone def: "Dermal bone that is part of the dorsal or upper border or antero-dorsal border of the orbit. The supraorbital bone may contact the orbital margin of the frontal bone medially, the antorbital antero-ventrally and the dermosphenotic posteriorly. The supraorbital bone does not carry sensory canals. The supraorbital bone is paired." [TAO:GA_TG] comment: The supraorbital bone may be present as two or one bone in extant teleosts, although many of the advanced forms lack the bone. xref: ZFA:0000691 is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010321 ! skeletal element of eye region relationship: part_of UBERON:0001697 ! orbit of skull relationship: part_of UBERON:2001709 ! infraorbital series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000692 name: symplectic def: "Replacement bone that is bilaterally paired and articulates with the hyomandibula and the quadrate." [ZFIN:curator] comment: When the interhyal bone or cartilage is present it articulates at the articulation of the hyomandibula and symplectic. xref: ZFA:0000692 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0011607 ! hyomandibular cartilage relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000693 name: tangential nucleus xref: ZFA:0000693 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000694 name: ceratobranchial 5 tooth def: "Tooth that forms on ceratobranchial 5 cartilage or bone." [ZFIN:curator] comment: Ceratobranchial 5 teeth are the only teeth present in zebrafish and other cypriniforms. synonym: "pharyngeal teeth" EXACT [TAO:0000694] xref: ZFA:0000694 is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0005176 ! tooth enamel organ relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000695 name: labial cavities xref: ZFA:0000695 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001007 ! digestive system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000698 name: tripus def: "Endochondral bone, membrane bone, and Weberian ossicle that is an element of third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swimbladder." [ZFIN:curator] synonym: "fourth Weberian ossicle" EXACT [TAO:0000698] synonym: "Weberian ossicle 4" EXACT [TAO:0000698] xref: ZFA:0000698 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000461 ! Weberian ossicle relationship: part_of UBERON:2001169 ! vertebral element 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000699 name: entopterygoid vertical strut def: "Process that is the dorsally directed, vertical process of the entopterygoid. The strut sometimes articulates with the orbitosphenoid." [TAO:wd] comment: Fink and Fink 1981, present in gymnotoids. synonym: "endopterygoid vertical strut" EXACT [TAO:0000699] synonym: "mesopterygoid vertical strut" EXACT [TAO:0000699] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000657 ! entopterygoid property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000701 name: ventral arrector xref: ZFA:0000701 is_a: UBERON:0014794 ! pectoral appendage muscle is_a: UBERON:2002147 ! arrector muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000703 name: ventral motor nucleus trigeminal nerve xref: ZFA:0000703 is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000704 name: ventral pelvic arrector xref: ZFA:0000704 is_a: UBERON:0014795 ! pelvic appendage muscle is_a: UBERON:2002147 ! arrector muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000707 name: ventral zone xref: ZFA:0000707 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000708 name: obsolete ventrolateral optic tract comment: removed axiom: part_of some 'optic tract'\nNot clear that directional labels for optic tract parts are consistent across taxa. To be reviewed. xref: ZFA:0000708 is_obsolete: true [Term] id: UBERON:2000710 name: viscerosensory commissural nucleus of Cajal xref: ZFA:0000710 is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000711 name: deep cell layer (gastrulation) def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995." [ZFIN:curator] synonym: "DEL" EXACT OMO:0003000 [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT OMO:0003004 [TAO:0000711] xref: ZFA:0000711 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000712 name: internal yolk syncytial layer def: "The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "I-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000712 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000714 name: obsolete accessory pretectal nucleus xref: ZFA:0000714 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000715 name: adductor hyohyoid xref: ZFA:0000715 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000716 name: afferent portion of pharyngeal arch artery def: "A section of a pharyngeal arch artery that delivers blood to the gills." [ISBN:0073040584] synonym: "afferent branchial artery" EXACT [ZFA:0000716] synonym: "afferent portion of branchial artery" EXACT [] xref: TAO:0000716 xref: ZFA:0000716 is_a: UBERON:0003469 ! respiratory system artery property_value: external_definition "Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch[ZFA]." xsd:string {source="ZFA:0000716"} [Term] id: UBERON:2000717 name: apical ectodermal ridge median fin fold def: "Apical ectodermal ridge that is part of the median fin fold." [ZFIN:curator] synonym: "apical ectodermal ridge median fin-fold" EXACT [TAO:0000717] xref: ZFA:0000717 is_a: UBERON:0004356 ! apical ectodermal ridge relationship: part_of UBERON:2000040 ! median fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000718 name: epaxial region somite 27 def: "The epaxial region of somite 27 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000718 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000931 ! myotome somite 27 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000719 name: obsolete slow muscle cell somite 21 synonym: "slow muscle cells somite 21" EXACT OMO:0003004 [TAO:0000719] xref: ZFA:0000719 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000720 name: obsolete slow muscle cell somite 24 synonym: "slow muscle cells somite 24" EXACT OMO:0003004 [TAO:0000720] xref: ZFA:0000720 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000721 name: obsolete slow muscle cell somite 27 synonym: "slow muscle cells somite 27" EXACT OMO:0003004 [TAO:0000721] xref: ZFA:0000721 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000722 name: obsolete slow muscle cell somite 3 synonym: "slow muscle cells somite 3" EXACT OMO:0003004 [TAO:0000722] xref: ZFA:0000722 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000723 name: obsolete slow muscle cell somite 5 synonym: "slow muscle cells somite 5" EXACT OMO:0003004 [TAO:0000723] xref: ZFA:0000723 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000724 name: obsolete slow muscle cell somite 8 synonym: "slow muscle cells somite 8" EXACT OMO:0003004 [TAO:0000724] xref: ZFA:0000724 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000725 name: somite 11 def: "Undifferentiated mesodermal component of early trunk segment 11 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000725 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "11" xsd:nonNegativeInteger [Term] id: UBERON:2000726 name: somite 14 def: "Undifferentiated mesodermal component of early trunk segment 14 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000726 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "14" xsd:nonNegativeInteger [Term] id: UBERON:2000727 name: somite 17 def: "Undifferentiated mesodermal component of early trunk segment 17 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000727 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "17" xsd:nonNegativeInteger [Term] id: UBERON:2000728 name: somite 2 def: "Undifferentiated mesodermal component of early trunk segment 2 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000728 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "2" xsd:nonNegativeInteger [Term] id: UBERON:2000729 name: epaxial region somite 3 def: "The epaxial region of somite 3 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000729 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000932 ! myotome somite 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000730 name: somite 23 def: "Undifferentiated mesodermal component of early tail segment 23 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000730 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "23" xsd:nonNegativeInteger [Term] id: UBERON:2000731 name: somite 27 def: "Undifferentiated mesodermal component of early tail segment 27 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000731 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "27" xsd:nonNegativeInteger [Term] id: UBERON:2000732 name: somite 3 def: "Undifferentiated mesodermal component of early trunk segment 3 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000732 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "3" xsd:nonNegativeInteger [Term] id: UBERON:2000733 name: somite 7 def: "Undifferentiated mesodermal component of early trunk segment 7 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000733 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "7" xsd:nonNegativeInteger [Term] id: UBERON:2000734 name: preural vertebra def: "Caudal vertebra that is one of the last caudal vertebrae anterior to the ural vertebrae that with its neural and haemal spines supports the procurrent caudal fin rays or lepidotrichia. The numbering of preural vertebrae is from caudal to rostral direction." [TAO:GA_TG] comment: The term preural vertebra was created by Nybelin (1963) for those vertebrae supporting caudal procurrent rays. For additional information see Arratia and Schultze (1992). Their neural and hemal arches may or may not be fused to their corresponding autocentrum. Fusion or separation of certain neural and/or haemal arches of preural centra is characteristic or certain teleosts subgroup. The boundary between preural and ural region is determined by the bifurcation of the four or five blood vessels running inside the hemal arches of the preural vertebrae (primary caudal artery, two secondary arterial trunks, primary caudal vein, and secondary subvertebral vein) (for details see Schultze & Arratia, 1989). The bifurcation of the caudal artery and vein was proposed as a landmark to homologize preural centrum 1 throughout actinopterygians (Nybelin, 1963). synonym: "caudal fin vertebra" EXACT [TAO:0000734] synonym: "specialized centra/vertebrae" EXACT OMO:0003004 [TAO:0000734] xref: ZFA:0000734 is_a: UBERON:0001095 ! caudal vertebra is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000735 name: hemal postzygapophysis def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [ZFIN:curator] synonym: "haemal postzygapophysis" EXACT [TAO:0000735] synonym: "hemal postygopophysis" EXACT [TAO:0000735] synonym: "hemal postzygapophyses" EXACT OMO:0003004 [TAO:0000735] xref: ZFA:0000735 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum relationship: part_of UBERON:0006065 ! hemal arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000739 name: epaxial region somite 11 def: "The epaxial region of somite 11 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000739 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000801 ! myotome somite 11 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000740 name: epaxial region somite 5 def: "The epaxial region of somite 5 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000740 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000933 ! myotome somite 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000741 name: epaxial region somite 14 def: "The epaxial region of somite 14 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000741 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000044 ! myotome somite 14 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000742 name: epaxial region somite 17 def: "The epaxial region of somite 17 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000742 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001015 ! myotome somite 17 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000743 name: epaxial region somite 2 def: "The epaxial region of somite 2 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000743 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001016 ! myotome somite 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000744 name: epaxial region somite 22 def: "The epaxial region of somite 22 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000744 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001017 ! myotome somite 22 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000745 name: epaxial region somite 25 def: "The epaxial region of somite 25 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000745 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001018 ! myotome somite 25 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000746 name: epaxial region somite 28 def: "The epaxial region of somite 28 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000746 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001019 ! myotome somite 28 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000747 name: epaxial region somite 30 def: "The epaxial region of somite 30 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000747 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001020 ! myotome somite 30 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000748 name: epaxial region somite 6 def: "The epaxial region of somite 6 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000748 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001021 ! myotome somite 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000749 name: epaxial region somite 9 def: "The epaxial region of somite 9 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000749 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001022 ! myotome somite 9 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000750 name: obsolete fast muscle cell somite 10 synonym: "fast muscle cells somite 10" EXACT OMO:0003004 [TAO:0000750] xref: ZFA:0000750 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000751 name: epaxial region somite 8 def: "The epaxial region of somite 8 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000751 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000934 ! myotome somite 8 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000752 name: obsolete fast muscle cell somite 13 synonym: "fast muscle cells somite 13" EXACT OMO:0003004 [TAO:0000752] xref: ZFA:0000752 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000753 name: obsolete fast muscle cell somite 16 synonym: "fast muscle cells somite 16" EXACT OMO:0003004 [TAO:0000753] xref: ZFA:0000753 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000754 name: obsolete fast muscle cell somite 19 synonym: "fast muscle cells somite 19" EXACT OMO:0003004 [TAO:0000754] xref: ZFA:0000754 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000755 name: obsolete fast muscle cell somite 21 synonym: "fast muscle cells somite 21" EXACT OMO:0003004 [TAO:0000755] xref: ZFA:0000755 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000756 name: obsolete fast muscle cell somite 24 synonym: "fast muscle cells somite 24" EXACT OMO:0003004 [TAO:0000756] xref: ZFA:0000756 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000757 name: obsolete fast muscle cell somite 27 synonym: "fast muscle cells somite 27" EXACT OMO:0003004 [TAO:0000757] xref: ZFA:0000757 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000758 name: obsolete fast muscle cell somite 3 synonym: "fast muscle cells somite 3" EXACT OMO:0003004 [TAO:0000758] xref: ZFA:0000758 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000759 name: obsolete fast muscle cell somite 5 synonym: "fast muscle cells somite 5" EXACT OMO:0003004 [TAO:0000759] xref: ZFA:0000759 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000760 name: obsolete fast muscle cell somite 8 synonym: "fast muscle cells somite 8" EXACT OMO:0003004 [TAO:0000760] xref: ZFA:0000760 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000766 name: granular layer valvula cerebelli xref: ZFA:0000766 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000767 name: hypaxial region somite 11 def: "The hypaxial region of somite 11 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000767 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000801 ! myotome somite 11 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000768 name: hypaxial region somite 14 def: "The hypaxial region of somite 14 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000768 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000044 ! myotome somite 14 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000769 name: hypaxial region somite 17 def: "The hypaxial region of somite 17 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000769 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001015 ! myotome somite 17 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000770 name: hypaxial region somite 2 def: "The hypaxial region of somite 2 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000770 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001016 ! myotome somite 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000771 name: hypaxial region somite 22 def: "The hypaxial region of somite 22 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000771 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001017 ! myotome somite 22 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000772 name: hypaxial region somite 25 def: "The hypaxial region of somite 25 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000772 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001018 ! myotome somite 25 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000773 name: obsolete fast muscle cell somite 12 synonym: "fast muscle cells somite 12" EXACT OMO:0003004 [TAO:0000773] xref: ZFA:0000773 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000774 name: hypaxial region somite 28 def: "The hypaxial region of somite 28 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000774 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001019 ! myotome somite 28 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000775 name: hypaxial region somite 30 def: "The hypaxial region of somite 30 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000775 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001020 ! myotome somite 30 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000776 name: hypaxial region somite 6 def: "The hypaxial region of somite 6 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000776 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001021 ! myotome somite 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000777 name: hypaxial region somite 9 def: "The hypaxial region of somite 9 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000777 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001022 ! myotome somite 9 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000778 name: obsolete interneuron spinal cord synonym: "interneurons spinal cord" EXACT OMO:0003004 [TAO:0000778] xref: ZFA:0000778 is_obsolete: true replaced_by: CL:0005000 [Term] id: UBERON:2000779 name: lateral forebrain bundle telencephalon xref: ZFA:0000779 is_a: UBERON:0011299 ! white matter of telencephalon relationship: part_of UBERON:2007012 ! lateral forebrain bundle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000784 name: obsolete fast muscle cell somite 15 synonym: "fast muscle cells somite 15" EXACT OMO:0003004 [TAO:0000784] xref: ZFA:0000784 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000788 name: mesenchyme dorsal fin xref: ZFA:0000788 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:2000102 ! dorsal fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000790 name: obsolete muscle pioneer somite 10 synonym: "muscle pioneers somite 10" EXACT OMO:0003004 [TAO:0000790] xref: ZFA:0000790 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000791 name: obsolete muscle pioneer somite 13 synonym: "muscle pioneers somite 13" EXACT OMO:0003004 [TAO:0000791] xref: ZFA:0000791 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000792 name: obsolete muscle pioneer somite 16 synonym: "muscle pioneers somite 16" EXACT OMO:0003004 [TAO:0000792] xref: ZFA:0000792 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000793 name: obsolete muscle pioneer somite 19 synonym: "muscle pioneers somite 19" EXACT OMO:0003004 [TAO:0000793] xref: ZFA:0000793 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000794 name: obsolete muscle pioneer somite 22 synonym: "muscle pioneers somite 22" EXACT OMO:0003004 [TAO:0000794] xref: ZFA:0000794 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000795 name: obsolete fast muscle cell somite 18 synonym: "fast muscle cells somite 18" EXACT OMO:0003004 [TAO:0000795] xref: ZFA:0000795 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000796 name: obsolete muscle pioneer somite 25 synonym: "muscle pioneers somite 25" EXACT OMO:0003004 [TAO:0000796] xref: ZFA:0000796 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000797 name: obsolete muscle pioneer somite 28 synonym: "muscle pioneers somite 28" EXACT OMO:0003004 [TAO:0000797] xref: ZFA:0000797 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000798 name: obsolete muscle pioneer somite 30 synonym: "muscle pioneers somite 30" EXACT OMO:0003004 [TAO:0000798] xref: ZFA:0000798 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000799 name: obsolete muscle pioneer somite 6 synonym: "muscle pioneers somite 6" EXACT OMO:0003004 [TAO:0000799] xref: ZFA:0000799 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000800 name: obsolete muscle pioneer somite 9 synonym: "muscle pioneers somite 9" EXACT OMO:0003004 [TAO:0000800] xref: ZFA:0000800 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000801 name: myotome somite 11 def: "Portion of somite 11 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000801 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000725 ! somite 11 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000802 name: myotome somite 15 def: "Portion of somite 15 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000802 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000852 ! somite 15 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000803 name: myotome somite 18 def: "Portion of somite 18 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000803 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000853 ! somite 18 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000804 name: myotome somite 20 def: "Portion of somite 20 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000804 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000156 ! somite 20 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000805 name: myotome somite 23 def: "Portion of somite 23 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000805 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000730 ! somite 23 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000806 name: obsolete fast muscle cell somite 20 synonym: "fast muscle cells somite 20" EXACT OMO:0003004 [TAO:0000806] xref: ZFA:0000806 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000807 name: myotome somite 26 def: "Portion of somite 26 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000807 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000074 ! somite 26 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000808 name: myotome somite 29 def: "Portion of somite 29 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000808 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000981 ! somite 29 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000809 name: myotome somite 4 def: "Portion of somite 4 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000809 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000857 ! somite 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000810 name: myotome somite 7 def: "Portion of somite 7 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000810 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000733 ! somite 7 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000813 name: infraorbital lateral line neuromast def: "Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast infraorbital" EXACT [TAO:0000813] synonym: "neuromasts infraorbital" EXACT OMO:0003004 [TAO:0000813] xref: ZFA:0000813 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003094 ! infraorbital lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000814 name: opercular lateral line neuromast def: "Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast opercular" EXACT [TAO:0000814] synonym: "neuromasts opercular" EXACT OMO:0003004 [TAO:0000814] xref: ZFA:0000814 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000424 ! opercular lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000815 name: nucleus of medial longitudinal fasciculus of medulla subset: efo_slim synonym: "nucleus of MLF medulla" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of the medial longitudinal fasciculus medulla oblongata" EXACT [ZFA:0000815] xref: EFO:0003577 xref: TAO:0000815 xref: ZFA:0000815 is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:2000817 name: obsolete fast muscle cell somite 23 synonym: "fast muscle cells somite 23" EXACT OMO:0003004 [TAO:0000817] xref: ZFA:0000817 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000819 name: obsolete postcommissural nucleus of V central entopeduncular nucleus xref: ZFA:0000819 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000820 name: presumptive neuron neural tube synonym: "presumptive neurons neural tube" EXACT OMO:0003004 [TAO:0000820] xref: ZFA:0000820 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000821 name: obsolete primary neuron hindbrain synonym: "primary neurons hindbrain" EXACT OMO:0003004 [TAO:0000821] xref: ZFA:0000821 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000826 name: central nucleus torus semicircularis xref: ZFA:0000826 is_a: UBERON:0011214 ! nucleus of midbrain tectum relationship: part_of UBERON:2000599 ! torus semicircularis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000827 name: obsolete fast muscle cell somite 26 synonym: "fast muscle cells somite 26" EXACT OMO:0003004 [TAO:0000827] xref: ZFA:0000827 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000829 name: sclerotome somite 11 def: "Ventromedial region of somite 11 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000829 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000725 ! somite 11 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000830 name: sclerotome somite 14 def: "Ventromedial region of somite 14 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000830 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000726 ! somite 14 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000831 name: sclerotome somite 17 def: "Ventromedial region of somite 17 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000831 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000727 ! somite 17 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000832 name: sclerotome somite 2 def: "Ventromedial region of somite 2 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000832 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000728 ! somite 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000833 name: sclerotome somite 22 def: "Ventromedial region of somite 22 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000833 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000978 ! somite 22 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000834 name: sclerotome somite 25 def: "Ventromedial region of somite 25 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000834 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000980 ! somite 25 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000835 name: sclerotome somite 28 def: "Ventromedial region of somite 28 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000835 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000856 ! somite 28 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000836 name: sclerotome somite 30 def: "Ventromedial region of somite 30 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000836 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000157 ! somite 30 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000837 name: sclerotome somite 6 def: "Ventromedial region of somite 6 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000837 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000982 ! somite 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000838 name: obsolete fast muscle cell somite 29 synonym: "fast muscle cells somite 29" EXACT OMO:0003004 [TAO:0000838] xref: ZFA:0000838 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000839 name: sclerotome somite 9 def: "Ventromedial region of somite 9 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000839 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000983 ! somite 9 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000840 name: obsolete slow muscle cell somite 11 synonym: "slow muscle cells somite 11" EXACT OMO:0003004 [TAO:0000840] xref: ZFA:0000840 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000841 name: obsolete slow muscle cell somite 14 synonym: "slow muscle cells somite 14" EXACT OMO:0003004 [TAO:0000841] xref: ZFA:0000841 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000842 name: obsolete slow muscle cell somite 17 synonym: "slow muscle cells somite 17" EXACT OMO:0003004 [TAO:0000842] xref: ZFA:0000842 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000843 name: obsolete slow muscle cell somite 2 synonym: "slow muscle cells somite 2" EXACT OMO:0003004 [TAO:0000843] xref: ZFA:0000843 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000844 name: obsolete slow muscle cell somite 22 synonym: "slow muscle cells somite 22" EXACT OMO:0003004 [TAO:0000844] xref: ZFA:0000844 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000845 name: obsolete slow muscle cell somite 25 synonym: "slow muscle cells somite 25" EXACT OMO:0003004 [TAO:0000845] xref: ZFA:0000845 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000846 name: obsolete slow muscle cell somite 28 synonym: "slow muscle cells somite 28" EXACT OMO:0003004 [TAO:0000846] xref: ZFA:0000846 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000847 name: obsolete slow muscle cell somite 30 synonym: "slow muscle cells somite 30" EXACT OMO:0003004 [TAO:0000847] xref: ZFA:0000847 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000848 name: obsolete slow muscle cell somite 6 synonym: "slow muscle cells somite 6" EXACT OMO:0003004 [TAO:0000848] xref: ZFA:0000848 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000849 name: obsolete fast muscle cell somite 4 synonym: "fast muscle cells somite 4" EXACT OMO:0003004 [TAO:0000849] xref: ZFA:0000849 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000850 name: obsolete slow muscle cell somite 9 synonym: "slow muscle cells somite 9" EXACT OMO:0003004 [TAO:0000850] xref: ZFA:0000850 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000851 name: somite 12 def: "Undifferentiated mesodermal component of early trunk segment 12 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000851 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "12" xsd:nonNegativeInteger [Term] id: UBERON:2000852 name: somite 15 def: "Undifferentiated mesodermal component of early trunk segment 15 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000852 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "15" xsd:nonNegativeInteger [Term] id: UBERON:2000853 name: somite 18 def: "Undifferentiated mesodermal component of early trunk or tail segment 18 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000853 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "18" xsd:nonNegativeInteger [Term] id: UBERON:2000854 name: somite 21 def: "Undifferentiated mesodermal component of early tail 21 segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000854 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "21" xsd:nonNegativeInteger [Term] id: UBERON:2000855 name: somite 24 def: "Undifferentiated mesodermal component of early tail segment 24 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000855 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "24" xsd:nonNegativeInteger [Term] id: UBERON:2000856 name: somite 28 def: "Undifferentiated mesodermal component of early tail segment 28 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000856 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "28" xsd:nonNegativeInteger [Term] id: UBERON:2000857 name: somite 4 def: "Undifferentiated mesodermal component of early trunk segment 4 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000857 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "4" xsd:nonNegativeInteger [Term] id: UBERON:2000858 name: somite 8 def: "Undifferentiated mesodermal component of early trunk segment 8 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000858 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "8" xsd:nonNegativeInteger [Term] id: UBERON:2000859 name: specialized hemal arch and spine synonym: "ha(pu)" EXACT [TAO:0000859] synonym: "hemal arches (preural)" EXACT [ZFIN:ZDB-PUB-011008-1] synonym: "specialized haemal arch and spine" EXACT [TAO:0000859] synonym: "specialized hemal arches and spines" EXACT OMO:0003004 [TAO:0000859] xref: ZFA:0000859 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000860 name: obsolete fast muscle cell somite 7 synonym: "fast muscle cells somite 7" EXACT OMO:0003004 [TAO:0000860] xref: ZFA:0000860 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000862 name: obsolete caudal fin skeleton def: "Median fin skeleton supporting the caudal fin." [TAO:wd] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000167 [Term] id: UBERON:2000864 name: epaxial region somite 1 def: "The epaxial region of somite 1 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000864 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000924 ! myotome somite 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000865 name: epaxial region somite 12 def: "The epaxial region of somite 12 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000865 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000926 ! myotome somite 12 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000866 name: epaxial region somite 15 def: "The epaxial region of somite 15 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000866 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000802 ! myotome somite 15 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000867 name: epaxial region somite 18 def: "The epaxial region of somite 18 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000867 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000803 ! myotome somite 18 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000868 name: epaxial region somite 20 def: "The epaxial region of somite 20 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000868 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000804 ! myotome somite 20 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000869 name: epaxial region somite 23 def: "The epaxial region of somite 23 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000869 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000805 ! myotome somite 23 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000870 name: epaxial region somite 26 def: "The epaxial region of somite 26 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000870 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000807 ! myotome somite 26 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000872 name: epaxial region somite 29 def: "The epaxial region of somite 29 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000872 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000808 ! myotome somite 29 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000873 name: epaxial region somite 4 def: "The epaxial region of somite 4 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000873 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000809 ! myotome somite 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000874 name: epaxial region somite 7 def: "The epaxial region of somite 7 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000874 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000810 ! myotome somite 7 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000876 name: obsolete fast muscle cell somite 11 synonym: "fast muscle cells somite 11" EXACT OMO:0003004 [TAO:0000876] xref: ZFA:0000876 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000877 name: obsolete fast muscle cell somite 14 synonym: "fast muscle cells somite 14" EXACT OMO:0003004 [TAO:0000877] xref: ZFA:0000877 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000878 name: obsolete fast muscle cell somite 17 synonym: "fast muscle cells somite 17" EXACT OMO:0003004 [TAO:0000878] xref: ZFA:0000878 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000879 name: obsolete fast muscle cell somite 2 synonym: "fast muscle cells somite 2" EXACT OMO:0003004 [TAO:0000879] xref: ZFA:0000879 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000880 name: obsolete fast muscle cell somite 22 synonym: "fast muscle cells somite 22" EXACT OMO:0003004 [TAO:0000880] xref: ZFA:0000880 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000881 name: obsolete fast muscle cell somite 25 synonym: "fast muscle cells somite 25" EXACT OMO:0003004 [TAO:0000881] xref: ZFA:0000881 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000883 name: obsolete fast muscle cell somite 28 synonym: "fast muscle cells somite 28" EXACT OMO:0003004 [TAO:0000883] xref: ZFA:0000883 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000884 name: obsolete fast muscle cell somite 30 synonym: "fast muscle cells somite 30" EXACT OMO:0003004 [TAO:0000884] xref: ZFA:0000884 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000885 name: obsolete fast muscle cell somite 6 synonym: "fast muscle cells somite 6" EXACT OMO:0003004 [TAO:0000885] xref: ZFA:0000885 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000886 name: obsolete fast muscle cell somite 9 synonym: "fast muscle cells somite 9" EXACT OMO:0003004 [TAO:0000886] xref: ZFA:0000886 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000887 name: floor plate neural rod synonym: "floorplate neural rod" EXACT [TAO:0000887] xref: ZFA:0000887 is_a: UBERON:0003079 ! floor plate relationship: part_of UBERON:0005068 ! neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000891 name: hypaxial region somite 1 def: "The hypaxial region of somite 1 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000891 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000924 ! myotome somite 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000892 name: hypaxial region somite 12 def: "The hypaxial region of somite 12 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000892 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000926 ! myotome somite 12 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000894 name: hypaxial region somite 15 def: "The hypaxial region of somite 15 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000894 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000802 ! myotome somite 15 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000895 name: hypaxial region somite 18 def: "The hypaxial region of somite 18 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000895 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000803 ! myotome somite 18 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000896 name: hypaxial region somite 20 def: "The hypaxial region of somite 20 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000896 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000804 ! myotome somite 20 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000897 name: hypaxial region somite 23 def: "The hypaxial region of somite 23 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000897 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000805 ! myotome somite 23 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000898 name: hypaxial region somite 26 def: "The hypaxial region of somite 26 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000898 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000807 ! myotome somite 26 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000899 name: hypaxial region somite 29 def: "The hypaxial region of somite 29 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000899 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000808 ! myotome somite 29 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000900 name: hypaxial region somite 4 def: "The hypaxial region of somite 4 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000900 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000809 ! myotome somite 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000901 name: hypaxial region somite 7 def: "The hypaxial region of somite 7 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000901 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000810 ! myotome somite 7 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000902 name: hypural musculature synonym: "hypural muscles" EXACT OMO:0003004 [TAO:0000902] xref: ZFA:0000902 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: part_of UBERON:2000628 ! caudal fin musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000910 name: medial forebrain bundle telencephalon xref: ZFA:0000910 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0011299 ! white matter of telencephalon relationship: part_of UBERON:0001910 ! medial forebrain bundle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000911 name: transverse process of neural arch 3 def: "Endochondral bone that is the anterodorsally oriented process of the third neural arch." [TAO:wd] synonym: "anterodorsal process of neural arch 3" EXACT [TAO:0000911] synonym: "transverse process of the third vertebra" EXACT [TAO:0000911] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001394 ! neural arch 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000912 name: mesenchyme median fin fold synonym: "mesenchyme median fin-fold" EXACT [TAO:0000912] xref: ZFA:0000912 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:2000040 ! median fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000913 name: molecular layer valvula cerebelli xref: ZFA:0000913 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000915 name: obsolete muscle pioneer somite 11 synonym: "muscle pioneers somite 11" EXACT OMO:0003004 [TAO:0000915] xref: ZFA:0000915 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000916 name: obsolete muscle pioneer somite 14 synonym: "muscle pioneers somite 14" EXACT OMO:0003004 [TAO:0000916] xref: ZFA:0000916 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000917 name: obsolete muscle pioneer somite 17 synonym: "muscle pioneers somite 17" EXACT OMO:0003004 [TAO:0000917] xref: ZFA:0000917 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000918 name: obsolete muscle pioneer somite 20 synonym: "muscle pioneers somite 20" EXACT OMO:0003004 [TAO:0000918] xref: ZFA:0000918 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000919 name: obsolete muscle pioneer somite 23 synonym: "muscle pioneers somite 23" EXACT OMO:0003004 [TAO:0000919] xref: ZFA:0000919 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000920 name: obsolete muscle pioneer somite 26 synonym: "muscle pioneers somite 26" EXACT OMO:0003004 [TAO:0000920] xref: ZFA:0000920 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000921 name: obsolete muscle pioneer somite 29 synonym: "muscle pioneers somite 29" EXACT OMO:0003004 [TAO:0000921] xref: ZFA:0000921 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000922 name: obsolete muscle pioneer somite 4 synonym: "muscle pioneers somite 4" EXACT OMO:0003004 [TAO:0000922] xref: ZFA:0000922 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000923 name: obsolete muscle pioneer somite 7 synonym: "muscle pioneers somite 7" EXACT OMO:0003004 [TAO:0000923] xref: ZFA:0000923 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000924 name: myotome somite 1 def: "Portion of somite 1 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000924 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000072 ! somite 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000925 name: hypaxial region somite 10 def: "The hypaxial region of somite 10 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000925 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001013 ! myotome somite 10 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000926 name: myotome somite 12 def: "Portion of somite 12 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000926 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000851 ! somite 12 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000927 name: myotome somite 16 def: "Portion of somite 16 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000927 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000976 ! somite 16 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000928 name: myotome somite 19 def: "Portion of somite 19 that gives rise to body wall muscle masses. Kimmel et al, 1995.>." [ZFIN:curator] xref: ZFA:0000928 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000977 ! somite 19 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000929 name: myotome somite 21 def: "Portion of somite 21 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000929 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000854 ! somite 21 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000930 name: myotome somite 24 def: "Portion of somite 24 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000930 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000855 ! somite 24 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000931 name: myotome somite 27 def: "Portion of somite 27 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000931 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000731 ! somite 27 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000932 name: myotome somite 3 def: "Portion of somite 3 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000932 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000732 ! somite 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000933 name: myotome somite 5 def: "Portion of somite 5 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000933 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000073 ! somite 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000934 name: myotome somite 8 def: "Portion of somite 8 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000934 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000858 ! somite 8 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000936 name: dorsal fin distal radial bone def: "Dorsal fin distal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0000936 is_a: UBERON:2001672 ! dorsal fin radial bone is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: develops_from UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2000937 name: hypaxial region somite 13 def: "The hypaxial region of somite 13 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000937 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001014 ! myotome somite 13 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000939 name: middle lateral line neuromast def: "Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] subset: efo_slim synonym: "neuromast middle" EXACT [TAO:0000939] synonym: "neuromasts middle" EXACT OMO:0003004 [TAO:0000939] xref: EFO:0003592 xref: TAO:0000939 xref: ZFA:0000939 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003096 ! middle lateral line [Term] id: UBERON:2000940 name: posterior lateral line neuromast def: "Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast posterior" EXACT [TAO:0000940] synonym: "neuromasts posterior" EXACT OMO:0003004 [TAO:0000940] xref: ZFA:0000940 is_a: UBERON:0008904 ! neuromast relationship: develops_from UBERON:2001157 ! posterior lateral line primordium relationship: part_of UBERON:0006334 ! posterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000941 name: nucleus of the medial longitudinal fasciculus synencephalon xref: ZFA:0000941 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000293 ! synencephalon property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000942 name: obsolete paraxial mesenchyme property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0003077 [Term] id: UBERON:2000946 name: hypaxial region somite 16 def: "The hypaxial region of somite 16 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000946 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000927 ! myotome somite 16 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000947 name: dorsal fin proximal radial bone def: "Dorsal fin proximal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "basal radial of dorsal fin" EXACT [TAO:0000947] xref: ZFA:0000947 is_a: UBERON:2001672 ! dorsal fin radial bone is_a: UBERON:2100947 ! dorsal fin proximal radial element relationship: develops_from UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2000952 name: sclerotome somite 1 def: "Ventromedial region of somite 1 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000952 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000072 ! somite 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000953 name: sclerotome somite 12 def: "Ventromedial region of somite 12 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000953 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000851 ! somite 12 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000954 name: sclerotome somite 15 def: "Ventromedial region of somite 15 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000954 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000852 ! somite 15 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000955 name: sclerotome somite 18 def: "Ventromedial region of somite 18 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000955 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000853 ! somite 18 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000956 name: sclerotome somite 20 def: "Ventromedial region of somite 20 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000956 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000156 ! somite 20 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000957 name: hypaxial region somite 19 def: "The hypaxial region of somite 19 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000957 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000928 ! myotome somite 19 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000958 name: sclerotome somite 23 def: "Ventromedial region of somite 23 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000958 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000730 ! somite 23 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000959 name: sclerotome somite 26 def: "Ventromedial region of somite 26 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000959 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000074 ! somite 26 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000960 name: sclerotome somite 29 def: "Ventromedial region of somite 29 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000960 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000981 ! somite 29 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000961 name: sclerotome somite 4 def: "Ventromedial region of somite 4 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000961 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000857 ! somite 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000962 name: sclerotome somite 7 def: "Ventromedial region of somite 7 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000962 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000733 ! somite 7 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000963 name: obsolete slow muscle cell somite 1 synonym: "slow muscle cells somite 1" EXACT OMO:0003004 [TAO:0000963] xref: ZFA:0000963 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000964 name: obsolete slow muscle cell somite 12 synonym: "slow muscle cells somite 12" EXACT OMO:0003004 [TAO:0000964] xref: ZFA:0000964 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000965 name: obsolete slow muscle cell somite 15 synonym: "slow muscle cells somite 15" EXACT OMO:0003004 [TAO:0000965] xref: ZFA:0000965 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000966 name: obsolete slow muscle cell somite 18 synonym: "slow muscle cells somite 18" EXACT OMO:0003004 [TAO:0000966] xref: ZFA:0000966 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000967 name: obsolete slow muscle cell somite 20 synonym: "slow muscle cells somite 20" EXACT OMO:0003004 [TAO:0000967] xref: ZFA:0000967 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000968 name: hypaxial region somite 21 def: "The hypaxial region of somite 21 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000968 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000929 ! myotome somite 21 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000969 name: obsolete slow muscle cell somite 23 synonym: "slow muscle cells somite 23" EXACT OMO:0003004 [TAO:0000969] xref: ZFA:0000969 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000970 name: obsolete slow muscle cell somite 26 synonym: "slow muscle cells somite 26" EXACT OMO:0003004 [TAO:0000970] xref: ZFA:0000970 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000971 name: obsolete slow muscle cell somite 29 synonym: "slow muscle cells somite 29" EXACT OMO:0003004 [TAO:0000971] xref: ZFA:0000971 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000972 name: obsolete slow muscle cell somite 4 synonym: "slow muscle cells somite 4" EXACT OMO:0003004 [TAO:0000972] xref: ZFA:0000972 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000973 name: obsolete slow muscle cell somite 7 synonym: "slow muscle cells somite 7" EXACT OMO:0003004 [TAO:0000973] xref: ZFA:0000973 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2000974 name: somite 10 def: "Undifferentiated mesodermal component of early trunk segment 10 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000974 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "10" xsd:nonNegativeInteger [Term] id: UBERON:2000975 name: somite 13 def: "Undifferentiated mesodermal component of early trunk segment 13 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000975 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "13" xsd:nonNegativeInteger [Term] id: UBERON:2000976 name: somite 16 def: "Undifferentiated mesodermal component of early trunk segment 16 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000976 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "16" xsd:nonNegativeInteger [Term] id: UBERON:2000977 name: somite 19 def: "Undifferentiated mesodermal component of early trunk or tail segment 19 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000977 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "19" xsd:nonNegativeInteger [Term] id: UBERON:2000978 name: somite 22 def: "Undifferentiated mesodermal component of early tail segment 22 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000978 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "22" xsd:nonNegativeInteger [Term] id: UBERON:2000979 name: hypaxial region somite 24 def: "The hypaxial region of somite 24 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000979 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000930 ! myotome somite 24 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000980 name: somite 25 def: "Undifferentiated mesodermal component of early tail segment 25 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000980 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "25" xsd:nonNegativeInteger [Term] id: UBERON:2000981 name: somite 29 def: "Undifferentiated mesodermal component of early tail segment 29 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000981 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "29" xsd:nonNegativeInteger [Term] id: UBERON:2000982 name: somite 6 def: "Undifferentiated mesodermal component of early trunk segment 6 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000982 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "6" xsd:nonNegativeInteger [Term] id: UBERON:2000983 name: somite 9 def: "Undifferentiated mesodermal component of early trunk segment 9 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000983 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: somite_number "9" xsd:nonNegativeInteger [Term] id: UBERON:2000984 name: superior reticular formation tegmentum xref: ZFA:0000984 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000985 name: ventral rhombencephalic commissure medulla oblongata xref: ZFA:0000985 is_a: UBERON:0014649 ! white matter of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000986 name: hypaxial region somite 27 def: "The hypaxial region of somite 27 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000986 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000931 ! myotome somite 27 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000987 name: hypaxial region somite 3 def: "The hypaxial region of somite 3 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000987 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000932 ! myotome somite 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000988 name: hypaxial region somite 5 def: "The hypaxial region of somite 5 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000988 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000933 ! myotome somite 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000989 name: hypaxial region somite 8 def: "The hypaxial region of somite 8 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000989 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000934 ! myotome somite 8 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000991 name: epaxial region somite 10 def: "The epaxial region of somite 10 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0000991 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001013 ! myotome somite 10 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000993 name: lateral wall neural rod xref: ZFA:0000993 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005068 ! neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000997 name: medial funicular nucleus trigeminal nuclei xref: ZFA:0000997 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001001 name: epaxial region somite 13 def: "The epaxial region of somite 13 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001001 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001014 ! myotome somite 13 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001002 name: obsolete motor axons peripheral comment: removed axiom: part_of some 'central nervous system'\nSeems out of scope for uberon and/or not very useful as a class. xref: ZFA:0001002 is_obsolete: true [Term] id: UBERON:2001003 name: obsolete muscle pioneer somite 12 synonym: "muscle pioneers somite 12" EXACT OMO:0003004 [TAO:0001003] xref: ZFA:0001003 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001004 name: obsolete muscle pioneer somite 15 synonym: "muscle pioneers somite 15" EXACT OMO:0003004 [TAO:0001004] xref: ZFA:0001004 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001005 name: obsolete muscle pioneer somite 18 synonym: "muscle pioneers somite 18" EXACT OMO:0003004 [TAO:0001005] xref: ZFA:0001005 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001006 name: obsolete muscle pioneer somite 21 synonym: "muscle pioneers somite 21" EXACT OMO:0003004 [TAO:0001006] xref: ZFA:0001006 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001007 name: obsolete muscle pioneer somite 24 synonym: "muscle pioneers somite 24" EXACT OMO:0003004 [TAO:0001007] xref: ZFA:0001007 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001008 name: obsolete muscle pioneer somite 27 synonym: "muscle pioneers somite 27" EXACT OMO:0003004 [TAO:0001008] xref: ZFA:0001008 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001009 name: obsolete muscle pioneer somite 3 synonym: "muscle pioneers somite 3" EXACT OMO:0003004 [TAO:0001009] xref: ZFA:0001009 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001010 name: obsolete muscle pioneer somite 5 synonym: "muscle pioneers somite 5" EXACT OMO:0003004 [TAO:0001010] xref: ZFA:0001010 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001011 name: obsolete muscle pioneer somite 8 synonym: "muscle pioneers somite 8" EXACT OMO:0003004 [TAO:0001011] xref: ZFA:0001011 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001012 name: epaxial region somite 16 def: "The epaxial region of somite 16 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001012 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000927 ! myotome somite 16 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001013 name: myotome somite 10 def: "Portion of somite 10 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001013 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000974 ! somite 10 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001014 name: myotome somite 13 def: "Portion of somite 13 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001014 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000975 ! somite 13 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001015 name: myotome somite 17 def: "Portion of somite 17 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001015 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000727 ! somite 17 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001016 name: myotome somite 2 def: "Portion of somite 2 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001016 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000728 ! somite 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001017 name: myotome somite 22 def: "Portion of somite 22 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001017 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000978 ! somite 22 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001018 name: myotome somite 25 def: "Portion of somite 25 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001018 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000980 ! somite 25 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001019 name: myotome somite 28 def: "Portion of somite 28 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001019 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000856 ! somite 28 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001020 name: myotome somite 30 def: "Portion of somite 30 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001020 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000157 ! somite 30 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001021 name: myotome somite 6 def: "Portion of somite 6 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001021 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000982 ! somite 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001022 name: myotome somite 9 def: "Portion of somite 9 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001022 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000983 ! somite 9 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001023 name: epaxial region somite 19 def: "The epaxial region of somite 19 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001023 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000928 ! myotome somite 19 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001025 name: occipital lateral line neuromast def: "A neuromast that is part of the occipital lateral line." [ZFIN:curator] subset: efo_slim synonym: "neuromast occipital" EXACT [TAO:0001025] synonym: "neuromasts occipital" EXACT OMO:0003004 [TAO:0001025] xref: EFO:0003606 xref: TAO:0001025 xref: ZFA:0001025 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003093 ! occipital lateral line [Term] id: UBERON:2001026 name: supraorbital lateral line neuromast def: "A neuromast that is part of the supraorbital lateral line." [ZFIN:curator] subset: efo_slim synonym: "neuromast supraorbital" EXACT [TAO:0001026] synonym: "neuromasts supraorbital" EXACT OMO:0003004 [TAO:0001026] xref: EFO:0003607 xref: TAO:0001026 xref: ZFA:0001026 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003090 ! supraorbital lateral line [Term] id: UBERON:2001028 name: hypurapophysis def: "Lateral process, spine-like or crest-like, at the lateral wall of the haemal arch of the parhypural that serves for insertion of the hypochordal longitudinal muscle. The process may contribute to the lateral protection of the parhypural foramen (where the caudal blood vessels exit the hemal arch) and the hypural foramen (where a caudal heart may be present). The hypurapophysis is paired." [ZFIN:curator] comment: The structure, the processus parhypurale, was given the name of hypurapophysis by Nursall (1963). Additional processes may be present on the lateral walls of hypurals 1 and 2 in some teleost subgroups. They are named primary, secondary hypurapophyses, etc. synonym: "hypurapophyses" EXACT OMO:0003004 [TAO:0001028] synonym: "parhypurapophyses" EXACT [TAO:0001028] synonym: "parhypurapophyses processes" EXACT [TAO:0001028] xref: ZFA:0001028 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000438 ! parhypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001030 name: epaxial region somite 21 def: "The epaxial region of somite 21 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001030 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000929 ! myotome somite 21 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001036 name: sclerotome somite 10 def: "Ventromedial region of somite 10 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001036 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000974 ! somite 10 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001037 name: sclerotome somite 13 def: "Ventromedial region of somite 13 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001037 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000975 ! somite 13 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001038 name: sclerotome somite 16 def: "Ventromedial region of somite 16 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001038 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000976 ! somite 16 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001039 name: sclerotome somite 19 def: "Ventromedial region of somite 19 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001039 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000977 ! somite 19 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001040 name: epaxial region somite 24 def: "The epaxial region of somite 24 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001040 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000930 ! myotome somite 24 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001041 name: sclerotome somite 21 def: "Ventromedial region of somite 21 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001041 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000854 ! somite 21 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001042 name: sclerotome somite 24 def: "Ventromedial region of somite 24 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001042 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000855 ! somite 24 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001043 name: sclerotome somite 27 def: "Ventromedial region of somite 27 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001043 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000731 ! somite 27 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001044 name: sclerotome somite 3 def: "Ventromedial region of somite 3 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001044 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000732 ! somite 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001045 name: sclerotome somite 5 def: "Ventromedial region of somite 5 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001045 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000073 ! somite 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001046 name: sclerotome somite 8 def: "Ventromedial region of somite 8 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001046 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000858 ! somite 8 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001047 name: obsolete slow muscle cell somite 10 synonym: "slow muscle cells somite 10" EXACT OMO:0003004 [TAO:0001047] xref: ZFA:0001047 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001048 name: obsolete slow muscle cell somite 13 synonym: "slow muscle cells somite 13" EXACT OMO:0003004 [TAO:0001048] xref: ZFA:0001048 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001049 name: obsolete slow muscle cell somite 16 synonym: "slow muscle cells somite 16" EXACT OMO:0003004 [TAO:0001049] xref: ZFA:0001049 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001050 name: obsolete slow muscle cell somite 19 synonym: "slow muscle cells somite 19" EXACT OMO:0003004 [TAO:0001050] xref: ZFA:0001050 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001051 name: caudal division of the internal carotid artery synonym: "CaDI" EXACT [TAO:0001051] xref: ZFA:0001051 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001532 ! internal carotid artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001052 name: primordial hindbrain channel def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. Isogai et al. (2002)." [ZFIN:curator] synonym: "medial head vein" EXACT [TAO:0001052] synonym: "PHCB" EXACT [TAO:0001052] xref: ZFA:0001052 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001053 name: future internal carotid artery synonym: "PICA" EXACT [TAO:0001053] synonym: "primitive internal carotid artery" EXACT [ZFA:0001053] xref: EFO:0003612 xref: TAO:0001053 xref: ZFA:0001053 is_a: UBERON:0004573 ! systemic artery relationship: develops_from UBERON:0004363 ! pharyngeal arch artery relationship: part_of UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches [Term] id: UBERON:2001054 name: lateral dorsal aorta def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is is called the radiax of the aorta. Isogai et al. 2001." [ZFIN:curator] synonym: "LDA" EXACT [TAO:0001054] xref: ZFA:0001054 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001055 name: pronephric duct opening xref: ZFA:0001055 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003060 ! pronephric duct property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001058 name: obsolete caudal fin def: "The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001." [ZFIN:curator] synonym: "nageoire caudale" EXACT [PSPUB:0000164] synonym: "tail" EXACT [TAO:0001058] synonym: "tail fin" EXACT [TAO:0001058] synonym: "uroptère" EXACT [PSPUB:0000135] synonym: "uroptérygie" EXACT [PSPUB:0000140] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000164 [Term] id: UBERON:2001059 name: cranial division of the internal carotid artery synonym: "CrDI" EXACT [TAO:0001059] synonym: "rostral division of the internal carotid artery" EXACT [TAO:0001059] xref: ZFA:0001059 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001532 ! internal carotid artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001060 name: basidorsal def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [ZFIN:curator] synonym: "arcualia" EXACT [TAO:0001060] xref: ZFA:0001060 is_a: UBERON:2001457 ! postcranial axial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001062 name: presumptive mesencephalic artery def: "Precursor to mesencephalic artery." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim synonym: "PMsA" EXACT [TAO:0001062] synonym: "primitive mesencephalic artery" EXACT [ZFA:0001062] xref: EFO:0003615 xref: TAO:0001062 xref: ZFA:0001062 is_a: UBERON:0001637 ! artery property_value: external_definition "Branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundar[ZFIN:curator]y" xsd:string {source="ZFIN:curator"} [Term] id: UBERON:2001063 name: posterior caudal vein xref: ZFA:0001063 is_a: UBERON:0003481 ! tail vein relationship: part_of UBERON:0010204 ! tail vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001065 name: obsolete lateral mesoderm xref: ZFA:0001065 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0003081 [Term] id: UBERON:2001069 name: ventral fin fold synonym: "anal fin fold" EXACT [TAO:0001069] synonym: "anal fin-fold" EXACT [TAO:0001069] synonym: "tail fin fold" EXACT [TAO:0001069] synonym: "tail fin-fold" EXACT [TAO:0001069] synonym: "ventral fin" EXACT [TAO:0001069] synonym: "ventral fin-fold" EXACT [TAO:0001069] xref: ZFA:0001069 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:2000040 ! median fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001073 name: axial vasculature xref: ZFA:0001073 is_a: UBERON:0002049 ! vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001076 name: intestinal bulb def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005." [ZFIN:curator] synonym: "anterior intestine" EXACT [TAO:0001076] xref: ZFA:0001076 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000160 ! intestine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001086 name: obsolete muscle pioneer comment: this class and all children are being obsoleted from uberon because they were unnecessarily generalized into TAO and because they are cell types. synonym: "muscle pioneers" EXACT OMO:0003004 [TAO:0001086] synonym: "non migratory adaxial cells" EXACT [TAO:0001086] xref: ZFA:0001086 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001089 name: myoseptum xref: ZFA:0001089 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003082 ! myotome property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001093 name: obsolete unspecified def: "Annotation with this anatomy term indicates that a structure was not specified by the author." [ZFIN:curator] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001095 name: immature macula def: "An otic sensory epithelium that will develop into the mature macula." [ZFA:0001095] synonym: "immature maculae" EXACT OMO:0003004 [TAO:0001095] synonym: "immature sensory patch" EXACT [TAO:0001095] synonym: "immature sensory patches" EXACT [TAO:0001095] xref: ZFA:0001095 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003051 ! ear vesicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001096 name: immature anterior macula xref: ZFA:0001096 is_a: UBERON:2001095 ! immature macula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001097 name: immature posterior macula xref: ZFA:0001097 is_a: UBERON:2001095 ! immature macula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001098 name: obsolete immature hair cell anterior macula synonym: "immature sensory hair cells anterior macula" EXACT OMO:0003004 [TAO:0001098] xref: ZFA:0001098 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001099 name: obsolete immature hair cell posterior macula synonym: "immature sensory hair cells posterior macula" EXACT OMO:0003004 [TAO:0001099] xref: ZFA:0001099 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001102 name: immature anterior otolith is_a: UBERON:2000139 ! immature otolith property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001103 name: immature posterior otolith is_a: UBERON:2000139 ! immature otolith property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001109 name: obsolete oocyte synonym: "egg" EXACT [TAO:0001109] xref: ZFA:0001109 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: CL:0000023 [Term] id: UBERON:2001118 name: urogenital papilla def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. Brion et al, 2004." [ZFIN:curator] synonym: "anal papilla" EXACT [TAO:0001118] synonym: "anal papillae" EXACT [TAO:0001118] synonym: "genital papilla" EXACT [TAO:0001118] synonym: "UGP" EXACT [TAO:0001118] synonym: "urogenital papillae" EXACT OMO:0003004 [TAO:0001118] xref: ZFA:0001118 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000990 ! reproductive system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001123 name: obsolete median fin skeleton def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:wd] synonym: "axial fin skeleton" EXACT [TAO:0001123] synonym: "unpaired fin skeleton" EXACT [TAO:0001123] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000170 [Term] id: UBERON:2001124 name: obsolete dorsal fin skeleton def: "Median fin skeleton located on the dorsal surface of the organism." [TAO:wd] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000168 [Term] id: UBERON:2001125 name: organizer inducing center def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999." [ZFIN:curator] synonym: "Nieuwkoop center" EXACT [TAO:0001125] xref: ZFA:0001125 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001126 name: noninvoluting endocytic marginal cell cluster def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996." [ZFIN:curator] synonym: "NEM" EXACT [TAO:0001126] synonym: "noninvoluting endocytic marginal cells" EXACT OMO:0003004 [TAO:0001126] xref: ZFA:0001126 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001129 name: pharyngeal pouches 2-6 xref: ZFA:0001129 is_a: UBERON:0004117 ! pharyngeal pouch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001137 name: ventral tooth row def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [TAO:wd] xref: ZFA:0001137 is_a: UBERON:0009678 ! tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001139 name: mediodorsal tooth row def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [TAO:wd] xref: ZFA:0001139 is_a: UBERON:0009678 ! tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001140 name: dorsal tooth row def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [TAO:wd] xref: ZFA:0001140 is_a: UBERON:0009678 ! tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001141 name: tooth 1V def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row." [TAO:wd] xref: ZFA:0001141 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "1" xsd:int [Term] id: UBERON:2001142 name: tooth 5V def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row." [TAO:wd] xref: ZFA:0001142 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "5" xsd:int [Term] id: UBERON:2001143 name: tooth 4V def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row." [TAO:wd] xref: ZFA:0001143 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "4" xsd:int [Term] id: UBERON:2001144 name: tooth 2V def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row." [TAO:wd] xref: ZFA:0001144 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "2" xsd:int [Term] id: UBERON:2001145 name: tooth 3V def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row." [TAO:wd] xref: ZFA:0001145 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "3" xsd:int [Term] id: UBERON:2001146 name: tooth 1MD def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row." [TAO:wd] xref: ZFA:0001146 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "1" xsd:int [Term] id: UBERON:2001147 name: tooth 2MD def: "Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row." [TAO:wd] xref: ZFA:0001147 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "2" xsd:int [Term] id: UBERON:2001148 name: tooth 1D def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row." [TAO:wd] xref: ZFA:0001148 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001140 ! dorsal tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "1" xsd:int [Term] id: UBERON:2001150 name: tooth 2D def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row." [TAO:wd] xref: ZFA:0001150 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001140 ! dorsal tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "2" xsd:int [Term] id: UBERON:2001151 name: tooth 4MD def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row." [TAO:wd] xref: ZFA:0001151 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "4" xsd:int [Term] id: UBERON:2001152 name: tooth 3MD def: "Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row." [TAO:wd] xref: ZFA:0001152 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: tooth_number "3" xsd:int [Term] id: UBERON:2001154 name: anal fin musculature xref: ZFA:0001154 is_a: UBERON:0007271 ! appendage musculature relationship: part_of UBERON:4000163 ! anal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001156 name: posterior lateral line placode xref: ZFA:0001156 is_a: UBERON:0003067 ! dorsolateral placode relationship: part_of UBERON:2001471 ! posterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001157 name: posterior lateral line primordium def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001." [ZFIN:curator] synonym: "posterior lateral line primordia" EXACT OMO:0003004 [TAO:0001157] xref: ZFA:0001157 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:2000228 ! lateral line primordium relationship: develops_from UBERON:2001156 ! posterior lateral line placode relationship: part_of UBERON:2001471 ! posterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001160 name: dorsal scute def: "Scute that is a bony plate that forms in dorsal midline of body margin between the skull and dorsal fin." [TAO:wd] is_a: UBERON:2002294 ! fish scute relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:2001248 ! dorsal scute series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001162 name: obsolete anal fin def: "Median fin that is located posterior to the anus." [TAO:wd] synonym: "nageoire anale" EXACT [PSPUB:0000164] synonym: "proctoptère" EXACT [PSPUB:0000136] synonym: "proctoptérygie" EXACT [PAPUB:0000142, PSPUB:0000140] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000163 [Term] id: UBERON:2001163 name: supraneural 7 bone xref: ZFA:0001163 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300219 ! supraneural 7 element relationship: develops_from UBERON:4300266 ! supraneural 7 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001164 name: supraneural 6 bone synonym: "sn6" EXACT [TAO:0001164] xref: ZFA:0001164 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300218 ! supraneural 6 element relationship: develops_from UBERON:4300265 ! supraneural 6 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001165 name: supraneural 5 bone synonym: "sn5" EXACT [TAO:0001165] xref: ZFA:0001165 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300217 ! supraneural 5 element relationship: develops_from UBERON:4300264 ! supraneural 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001166 name: supraneural 9 bone xref: ZFA:0001166 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300221 ! supraneural 9 element relationship: develops_from UBERON:4300268 ! supraneural 9 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001167 name: vertebral element 1 is_a: UBERON:0010913 ! vertebral element property_value: vertebra_number "1" xsd:nonNegativeInteger [Term] id: UBERON:2001168 name: vertebral element 2 def: "Vertebra that is posteriorly adjacent to vertebra 1." [PHENOSCAPE] is_a: UBERON:0010913 ! vertebral element property_value: vertebra_number "2" xsd:nonNegativeInteger [Term] id: UBERON:2001169 name: vertebral element 3 def: "Vertebra that is posteriorly adjacent to vertebra 2." [TAO:wd] xref: ZFA:0001169 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "3" xsd:nonNegativeInteger [Term] id: UBERON:2001170 name: vertebral element 4 def: "Vertebra that is anteriorly adjacent to vertebra 5." [TAO:wd] xref: ZFA:0001170 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "4" xsd:nonNegativeInteger [Term] id: UBERON:2001171 name: os suspensorium def: "Endochondral bone and Weberian ossicle that is an element of the fourth vertebra that curves ventrally around the anterior head of the swim bladder." [ZFIN:curator] synonym: "fifth Weberian ossicle" EXACT [TAO:0001171] synonym: "Weberian ossicle 5" EXACT [TAO:0001171] xref: ZFA:0001171 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000461 ! Weberian ossicle relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001172 name: roofing cartilage def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Bird and Mabee, 2003." [ZFIN:curator] xref: ZFA:0001172 is_a: UBERON:2001457 ! postcranial axial cartilage relationship: part_of UBERON:2001191 ! supraneural 2 bone relationship: part_of UBERON:2001192 ! supraneural 3 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001179 name: epidermal superficial stratum xref: ZFA:0001179 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0003055 ! periderm relationship: part_of UBERON:0001003 ! skin epidermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001181 name: epidermal intermediate stratum xref: ZFA:0001181 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001003 ! skin epidermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001183 name: dermal superficial region synonym: "stratum laxum" EXACT [TAO:0001183] xref: ZFA:0001183 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002067 ! dermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001186 name: collagenous dermal stroma def: "A layer of collagen fibrils present in the imature integument in an acellular subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. Le Guellec et al, 2004." [ZFIN:curator] synonym: "primary dermal stroma" EXACT [TAO:0001186] xref: ZFA:0001186 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0002067 ! dermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001188 name: Weberian apparatus def: "Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear." [ZFIN:curator] comment: Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi. xref: ZFA:0001188 is_a: UBERON:0000477 ! anatomical cluster relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0001130 ! vertebral column property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001190 name: Weberian vertebra def: "Vertebra that is part of the Weberian apparatus." [ZFIN:curator] comment: Weberian vertebra are usually vertebra 1-4. Present in Otophysi. synonym: "Weberian vertebrae" EXACT OMO:0003004 [TAO:0001190] xref: ZFA:0001190 is_a: UBERON:4300223 ! precaudal vertebra relationship: part_of UBERON:2001188 ! Weberian apparatus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001191 name: supraneural 2 bone def: "Supraneural bone located dorsal to vertebra 2." [ZFIN:curator] comment: In otophysans, supraneural 2 bone is part of the neural complex. synonym: "small supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] synonym: "sn2" EXACT [TAO:0001191] xref: ZFA:0001191 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300214 ! supraneural 2 element relationship: develops_from UBERON:2001869 ! supraneural 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001192 name: supraneural 3 bone def: "Supraneural bone that is located dorsal to vertebrae 3 and 4." [ZFIN:curator] comment: In otophysans, supraneural 3 bone is part of the neural complex and fuses in development with neural arches 3 and 4. synonym: "large supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] synonym: "sn3" EXACT [TAO:0001192] xref: ZFA:0001192 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300215 ! supraneural 3 element relationship: develops_from UBERON:2001870 ! supraneural 3 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001193 name: supraneural 8 bone xref: ZFA:0001193 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300220 ! supraneural 8 element relationship: develops_from UBERON:4300267 ! supraneural 8 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001200 name: corpuscles of Stannius def: "Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism." [ZFIN:curator] xref: ZFA:0001200 is_a: UBERON:0000479 ! tissue is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0005172 ! abdomen element relationship: part_of UBERON:0000080 ! mesonephros property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001201 name: ventral lateral mesoderm xref: ZFA:0001201 is_a: UBERON:2000083 ! ventral mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001203 name: obsolete ciliary body xref: ZFA:0001203 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0001775 [Term] id: UBERON:2001220 name: basibranchial copula def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton." [ZFIN:curator] synonym: "copula" RELATED [TAO:0001220] synonym: "copulae" RELATED OMO:0003004 [TAO:0001220] xref: ZFA:0001220 is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001221 name: anterior copula def: "Copula that is ventral, median, and associated with pharyngeal arches 3-5." [ZFIN:curator] synonym: "anterior basibranchial copula" EXACT [TAO:0001221] synonym: "copula 1" BROAD [TAO:0001221] synonym: "copula 2" BROAD [TAO:0001221] xref: ZFA:0001221 is_a: UBERON:2001220 ! basibranchial copula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001222 name: posterior copula def: "Copula that is ventral, median, and associated with branchial arches 4 and 5 (pharyngeal arches 6-7)." [ZFIN:curator] synonym: "copula 2" EXACT [TAO:0001222] synonym: "copula 3" RELATED [TAO:0001222] synonym: "posterior basibranchial copula" EXACT [TAO:0001222] synonym: "posterior copula" EXACT [TAO:0001222] xref: ZFA:0001222 is_a: UBERON:2001220 ! basibranchial copula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001223 name: basibranchial 1 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3). Typically develops in the anterior copula cartilage." [ZFIN:curator] xref: ZFA:0001223 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone is_a: UBERON:2001915 ! basibranchial 1 element relationship: develops_from UBERON:2001864 ! basibranchial 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001224 name: basibranchial 2 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). Typically develops in the anterior copula cartilage." [ZFIN:curator] xref: ZFA:0001224 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone is_a: UBERON:2001916 ! basibranchial 2 element relationship: develops_from UBERON:2001874 ! basibranchial 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001225 name: basibranchial 3 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5). Typically develops in the anterior copula cartilage." [ZFIN:curator] xref: ZFA:0001225 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone is_a: UBERON:2001917 ! basibranchial 3 element relationship: develops_from UBERON:2001876 ! basibranchial 3 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001226 name: basibranchial 4 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6). Develops in posterior copula cartilage or basibranchial 4 cartilage." [ZFIN:curator] xref: ZFA:0001226 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone is_a: UBERON:2001918 ! basibranchial 4 element relationship: develops_from UBERON:2001865 ! basibranchial 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001228 name: pharyngeal arch 3 skeleton synonym: "branchial arch 1 skeleton" EXACT [TAO:0001228] synonym: "gill arch 1 skeleton" EXACT [TAO:0001228] synonym: "visceral arch 3 skeleton" EXACT [TAO:0001228] xref: ZFA:0001228 is_a: UBERON:0010912 ! subdivision of skeleton relationship: develops_from UBERON:0003114 ! pharyngeal arch 3 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001229 name: pharyngeal arch 7 skeleton synonym: "branchial arch 5 skeleton" EXACT [TAO:0001229] synonym: "gill arch 5 skeleton" EXACT [TAO:0001229] synonym: "visceral arch 7 skeleton" EXACT [TAO:0001229] xref: ZFA:0001229 is_a: UBERON:0010912 ! subdivision of skeleton relationship: develops_from UBERON:0011087 ! pharyngeal arch 7 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001230 name: pharyngeal arch 6 skeleton synonym: "branchial arch 4 skeleton" EXACT [TAO:0001230] synonym: "gill arch 4 skeleton" EXACT [TAO:0001230] synonym: "visceral arch 6 skeleton" EXACT [TAO:0001230] xref: ZFA:0001230 is_a: UBERON:0010912 ! subdivision of skeleton relationship: develops_from UBERON:0003117 ! pharyngeal arch 6 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001231 name: pharyngeal arch 4 skeleton synonym: "branchial arch 2 skeleton" EXACT [TAO:0001231] synonym: "gill arch 2 skeleton" EXACT [TAO:0001231] synonym: "visceral arch 4 skeleton" EXACT [TAO:0001231] xref: ZFA:0001231 is_a: UBERON:0010912 ! subdivision of skeleton relationship: develops_from UBERON:0003115 ! pharyngeal arch 4 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001232 name: pharyngeal arch 5 skeleton synonym: "branchial arch 3 skeleton" EXACT [TAO:0001232] synonym: "gill arch 3 skeleton" EXACT [TAO:0001232] synonym: "visceral arch 5 skeleton" EXACT [TAO:0001232] xref: ZFA:0001232 is_a: UBERON:0010912 ! subdivision of skeleton relationship: develops_from UBERON:0003116 ! pharyngeal arch 5 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001233 name: hypobranchial 1 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally. Develops in hypobranchial 1 cartilage." [ZFIN:curator] xref: ZFA:0001233 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001894 ! hypobranchial 1 element relationship: develops_from UBERON:2001524 ! hypobranchial 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001234 name: hypobranchial 4 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally. Develops in hypobranchial 4 cartilage." [ZFIN:curator] xref: ZFA:0001234 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001897 ! hypobranchial 4 element relationship: develops_from UBERON:2001523 ! hypobranchial 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001235 name: hypobranchial 3 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. Develops in hypobranchial 3 cartilage." [ZFIN:curator] xref: ZFA:0001235 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001896 ! hypobranchial 3 element relationship: develops_from UBERON:2001526 ! hypobranchial 3 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001236 name: hypobranchial 2 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. Develops in hypobranchial 2 cartilage." [ZFIN:curator] xref: ZFA:0001236 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001895 ! hypobranchial 2 element relationship: develops_from UBERON:2001525 ! hypobranchial 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001237 name: ceratobranchial 1 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] xref: ZFA:0001237 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001899 ! ceratobranchial 1 element relationship: develops_from UBERON:2001520 ! ceratobranchial 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001239 name: ceratobranchial 5 bone def: "Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone." [ZFIN:curator] comment: Synonym 'lower pharyngeal' from Weitzman, 1962.\nSynonym 'inferior pharyngeal bone' from Saxena, S.C. (1960). The cranial musculature of a hill-stream cyprinid fish Garra mullya (Sykes). Proceedings of the National Institute of Science in India. 26B(4): 176-188.\nSynonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bone musculature of the carp, Cyprinus carpio. Journal of Morphology. 134(2): 131-140. synonym: "inferior pharyngeal bone" EXACT [TAO:0001239] synonym: "lower pharyngeal" EXACT [TAO:0001239] xref: ZFA:0001239 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001903 ! ceratobranchial 5 element relationship: develops_from UBERON:2001521 ! ceratobranchial 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001240 name: ceratobranchial 4 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] xref: ZFA:0001240 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001902 ! ceratobranchial 4 element relationship: develops_from UBERON:2001519 ! ceratobranchial 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001241 name: ceratobranchial 3 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] xref: ZFA:0001241 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001901 ! ceratobranchial 3 element relationship: develops_from UBERON:2001518 ! ceratobranchial 3 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001242 name: ceratobranchial 2 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] xref: ZFA:0001242 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001900 ! ceratobranchial 2 element relationship: develops_from UBERON:2001517 ! ceratobranchial 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001243 name: epibranchial 1 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] xref: ZFA:0001243 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001905 ! epibranchial 1 element relationship: develops_from UBERON:2001528 ! epibranchial 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001244 name: epibranchial 5 cartilage def: "Epibranchial cartilage that is bilaterally paired and located at the articulation of epibranchial 4 cartilage or bone and the posterior tip of ceratobranchial 4 cartilage or bone." [ZFIN:curator] synonym: "accessory cartilage" EXACT [TAO:0001244] synonym: "interbranchial" EXACT [TAO:0001244] synonym: "interbranchial IV" EXACT [TAO:0001244] xref: ZFA:0001244 is_a: UBERON:2001527 ! epibranchial cartilage relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001245 name: epibranchial 4 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] xref: ZFA:0001245 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001908 ! epibranchial 4 element relationship: develops_from UBERON:2001531 ! epibranchial 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001246 name: epibranchial 2 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] xref: ZFA:0001246 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001906 ! epibranchial 2 element relationship: develops_from UBERON:2001530 ! epibranchial 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001247 name: epibranchial 3 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] xref: ZFA:0001247 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001907 ! epibranchial 3 element relationship: develops_from UBERON:2001529 ! epibranchial 3 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001248 name: dorsal scute series is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001250 name: pharyngobranchial 2 bone def: "Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [ZFIN:curator] synonym: "infrapharyngobranchial 2" EXACT [TAO:0001250] xref: ZFA:0001250 is_a: UBERON:2000527 ! pharyngobranchial bone is_a: UBERON:2001911 ! pharyngobranchial 2 element relationship: develops_from UBERON:2001536 ! pharyngobranchial 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001251 name: pharyngobranchial 4 cartilage def: "Most posterior pharyngobranchial cartilage, located medial to the epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial 4 cartilage" EXACT [TAO:0001251] synonym: "infrapharyngobranchials" EXACT OMO:0003004 [TAO:0001251] xref: ZFA:0001251 is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001913 ! pharyngobranchial 4 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001252 name: pharyngobranchial 3 bone def: "Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [TAO:wd] synonym: "infrapharyngobranchial 3" EXACT [TAO:0001252] xref: ZFA:0001252 is_a: UBERON:2000527 ! pharyngobranchial bone is_a: UBERON:2001912 ! pharyngobranchial 3 element relationship: develops_from UBERON:2001534 ! pharyngobranchial 3 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001253 name: neural arch 2 def: "Neural arch that is the second after the neurocranium." [TAO:wd] is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001254 name: abdominal scute series synonym: "abdominal scutes" EXACT OMO:0003004 [TAO:0001254] is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001256 name: lateral floor plate xref: ZFA:0001256 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003079 ! floor plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001257 name: medial floor plate def: "The medial portion of the spinal cord floor plate, located adjacent to the notochord." [ZFIN:curator] xref: ZFA:0001257 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003079 ! floor plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001259 name: obsolete forebrain ventricle synonym: "forebrain vesicle" EXACT [TAO:0001259] synonym: "prosencephalic ventricle" EXACT [TAO:0001259] xref: ZFA:0001259 property_value: provenance_notes "This class was obsoleted as it was discovered to be equivalent to an existing class" xsd:string is_obsolete: true replaced_by: UBERON:0006284 [Term] id: UBERON:2001263 name: ovarian follicle stage I def: "Stage I follicles (less than 140 microns) are primary growth stage. Selman et al, 1993." [ZFIN:curator] synonym: "previtillogenic ovarian follicle" EXACT [TAO:0001263] xref: ZFA:0001263 is_a: UBERON:0001305 ! ovarian follicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001265 name: ovarian follicle stage II def: "Stage II follicles (140-340 microns) are cortical alveolus stage. Selman et al, 1993." [ZFIN:curator] xref: ZFA:0001265 is_a: UBERON:0001305 ! ovarian follicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001266 name: ovarian follicle stage III def: "Stage III (340-690 microns) are vitellogenesis. Selman et al, 1993." [ZFIN:curator] xref: ZFA:0001266 is_a: UBERON:0001305 ! ovarian follicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001269 name: regenerating fin/limb def: "Fin or limb undergoing the process of regeneration." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim synonym: "regenerating fins" NARROW OMO:0003004 [ZFA:0001269] xref: EFO:0003657 xref: TAO:0001269 xref: ZFA:0001269 is_a: UBERON:0004708 ! paired limb/fin is_a: UBERON:0007567 ! regenerating anatomical structure [Term] id: UBERON:2001274 name: coronomeckelian def: "Tendon bone located on the median side of the lower jaw, dorsal to Meckel's cartilage and medial to the angular. The coronomeckelian forms as an ossification of the tendon of the adductor mandibulae muscle. The coronomeckelian is a paired bone." [ZFIN:curator] synonym: "sesamoid articular" EXACT [TAO:0001274] synonym: "sesamoid coronoid" EXACT [TAO:0001274] xref: ZFA:0001274 is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 ! dermal bone is_a: UBERON:4000134 ! ossified tendon relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001275 name: sublingual bone def: "Endochondral bone that is the median element of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:je] is_a: UBERON:0002513 ! endochondral bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001277 name: anterior chamber swim bladder def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001277 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006860 ! swim bladder property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001278 name: posterior chamber swim bladder def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001278 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006860 ! swim bladder property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001279 name: branchiostegal ray 1 def: "Branchiostegal ray that is the anterior-most ray in the adult." [ZFIN:curator] xref: ZFA:0001279 is_a: UBERON:2000476 ! branchiostegal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001280 name: branchiostegal ray 3 def: "Branchiostegal ray that is the third anterior-most ray in the adult." [ZFIN:curator] xref: ZFA:0001280 is_a: UBERON:2000476 ! branchiostegal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001281 name: branchiostegal ray 2 def: "Branchiostegal ray that is the second anterior-most ray in the adult." [ZFIN:curator] xref: ZFA:0001281 is_a: UBERON:2000476 ! branchiostegal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001285 name: obsolete intersegmental vessel synonym: "intersegmental vessels" EXACT OMO:0003004 [TAO:0001285] synonym: "intersomitic vessels" EXACT [TAO:0001285] synonym: "Se" EXACT [TAO:0001285] xref: ZFA:0001285 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001286 name: caudal vein plexus xref: ZFA:0001286 is_a: UBERON:0010204 ! tail vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001293 name: posterior kidney xref: ZFA:0001293 is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element relationship: develops_from UBERON:0002120 ! pronephros relationship: part_of UBERON:0000080 ! mesonephros property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001297 name: vagal placode 1 xref: ZFA:0001297 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001298 name: vagal placode 2 xref: ZFA:0001298 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001299 name: vagal placode 3 xref: ZFA:0001299 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001300 name: vagal placode 4 xref: ZFA:0001300 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001302 name: vagal ganglion 1 synonym: "gX1" EXACT [TAO:0001302] synonym: "nodose ganglion 1" EXACT [TAO:0001302] xref: ZFA:0001302 is_a: UBERON:0009127 ! epibranchial ganglion relationship: develops_from UBERON:2001297 ! vagal placode 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001303 name: vagal ganglion 2 synonym: "gX2" EXACT [TAO:0001303] synonym: "nodose ganglion 2" EXACT [TAO:0001303] xref: ZFA:0001303 is_a: UBERON:0009127 ! epibranchial ganglion relationship: develops_from UBERON:2001298 ! vagal placode 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001304 name: vagal ganglion 3 synonym: "gX3" EXACT [TAO:0001304] synonym: "nodose ganglion 3" EXACT [TAO:0001304] xref: ZFA:0001304 is_a: UBERON:0009127 ! epibranchial ganglion relationship: develops_from UBERON:2001299 ! vagal placode 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001305 name: vagal ganglion 4 synonym: "gX4" EXACT [TAO:0001305] synonym: "nodose ganglion 4" EXACT [TAO:0001305] xref: ZFA:0001305 is_a: UBERON:0009127 ! epibranchial ganglion relationship: develops_from UBERON:2001300 ! vagal placode 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001312 name: dorsal anterior lateral line ganglion subset: efo_slim synonym: "anterodorsal lateral line ganglion" EXACT [TAO:0001312] xref: EFO:0003674 xref: TAO:0001312 xref: ZFA:0001312 is_a: UBERON:2001391 ! anterior lateral line ganglion relationship: develops_from UBERON:2001316 ! anterior lateral line placode [Term] id: UBERON:2001313 name: ventral anterior lateral line ganglion synonym: "anteroventral lateral line ganglion" EXACT [TAO:0001313] xref: ZFA:0001313 is_a: UBERON:2001391 ! anterior lateral line ganglion relationship: develops_from UBERON:2001316 ! anterior lateral line placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001314 name: posterior lateral line ganglion def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator] xref: ZFA:0001314 is_a: UBERON:2000120 ! lateral line ganglion relationship: develops_from UBERON:2001156 ! posterior lateral line placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001316 name: anterior lateral line placode def: "Dorsolateral placode that gives rise to the anterior lateral line." [ZFA:0001316, ZFA:curator] subset: efo_slim synonym: "anterior lateral line placodes" RELATED OMO:0003004 [ZFA:0001316] synonym: "pre-auditory lateral line placode" RELATED [XAO:0004221] xref: EFO:0003461 xref: TAO:0001316 xref: XAO:0004221 xref: ZFA:0001316 is_a: UBERON:0003067 ! dorsolateral placode relationship: part_of UBERON:2001468 ! anterior lateral line system property_value: external_definition "Lateral line placode that gives rise to the anterior lateral line nerve[XAO:0004221, XAO:EJS]." xsd:string {source="XAO:EJS"} [Term] id: UBERON:2001322 name: obsolete dorsoventral diencephalic tract def: "A tract originating in the epiphysis and fasiculating with the tract of the postoptic commissure. Ross et al, 1992." [ZFIN:curator] synonym: "DVDT" EXACT [TAO:0001322] xref: ZFA:0001322 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001324 name: enteric musculature xref: ZFA:0001324 is_a: UBERON:0000383 ! musculature of body relationship: part_of UBERON:0001555 ! digestive tract property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001333 name: sublingual dorsal and ventral fused def: "Sublingual that is the single element resulting from the fusion of the sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] is_a: UBERON:2001275 ! sublingual bone relationship: develops_from UBERON:2001475 ! sublingual dorsal ossification relationship: develops_from UBERON:2001476 ! sublingual ventral ossification property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001335 name: supradorsal def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [ZFIN:curator] xref: ZFA:0001335 is_a: UBERON:2001457 ! postcranial axial cartilage relationship: part_of UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001337 name: obsolete spermatogonia xref: ZFA:0009007 is_obsolete: true replaced_by: CL:0000020 [Term] id: UBERON:2001339 name: obsolete nucleus of the tract of the anterior commissure def: "Telencephalic nucleus containing the cell bodies of neurons whose axons form the anterior commissure." [ZFIN:curator] synonym: "ntAC" EXACT [TAO:0001339] xref: ZFA:0001339 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001340 name: nucleus of the tract of the postoptic commissure def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [ZFIN:curator] synonym: "ntPOC" EXACT [TAO:0001340] xref: ZFA:0001340 is_a: UBERON:0006569 ! diencephalic nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001341 name: intervening zone def: "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003." [ZFIN:curator] synonym: "IZ" EXACT [TAO:0001341] xref: ZFA:0001341 is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from UBERON:2001342 ! presumptive intervening zone relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001342 name: presumptive intervening zone xref: ZFA:0001342 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:2007023 ! posterior neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001343 name: telencephalon diencephalon boundary xref: ZFA:0001343 is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001890 ! forebrain property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001347 name: stratum fibrosum et griseum superficiale xref: ZFA:0001347 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001348 name: stratum marginale xref: ZFA:0001348 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001349 name: stratum opticum xref: ZFA:0001349 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001352 name: stratum periventriculare xref: ZFA:0001352 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001354 name: obsolete mesencephalic tegmentum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001357 name: alar plate midbrain xref: ZFA:0001357 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001891 ! midbrain property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001359 name: obsolete pineal complex xref: ZFA:0001359 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001360 name: obsolete parapineal organ def: "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. Gamse et al, 2003." [ZFIN:curator] xref: ZFA:0001360 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001361 name: basiventral def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [ZFIN:curator] synonym: "arcualia" RELATED [TAO:0001361] xref: ZFA:0001361 is_a: UBERON:2001457 ! postcranial axial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001363 name: neural complex of Weberian apparatus alt_id: UBERON:2001398 def: "Anatomical cluster that consists of supraneural 2 bone and supraneural 3 bone and their extensions, and which is part of the Weberian apparatus." [ZFIN:curator] synonym: "neural complex" BROAD [] synonym: "Weberian supraneural" EXACT [TAO:0001363] xref: ZFA:0001363 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:2001188 ! Weberian apparatus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001364 name: hemal spine def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [ZFIN:curator] synonym: "haemacanthe" EXACT [PSPUB:0000115] synonym: "haemal spine" EXACT [TAO:0001364] synonym: "hémacanthe" EXACT [PSPUB:0000143] synonym: "épine hémale" EXACT [PSPUB:0000164] xref: ZFA:0001364 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum relationship: part_of UBERON:0006065 ! hemal arch relationship: part_of UBERON:2002098 ! hemal spine series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001366 name: tract of the postoptic commissure synonym: "TPOC" EXACT [TAO:0001366] xref: ZFA:0001366 is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0003936 ! postoptic commissure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001371 name: pancreatic system xref: ZFA:0001371 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0001007 ! digestive system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001373 name: obsolete migratory slow muscle precursor cell def: "Cells that initially are located adjacent to the spinal cord and notochord along that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [ZFIN:curator] comment: likely very zebrafish specific so being obsoleted for now. synonym: "migratory slow muscle precursor cells" EXACT OMO:0003004 [TAO:0001373] xref: ZFA:0001373 is_obsolete: true [Term] id: UBERON:2001378 name: axial hypoblast xref: ZFA:0001378 is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003062 ! primitive knot relationship: part_of UBERON:0000089 ! hypoblast (generic) property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001382 name: epibranchial bone uncinate process def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] xref: ZFA:0001382 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000658 ! epibranchial bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001388 name: epithelial mesenchymal boundary of regenerating fin/limb def: "An epithelial-mesenchymal boundary that is part of a regenerating fin/limb." [OBOL:automatic] xref: TAO:0001388 xref: ZFA:0001388 is_a: UBERON:0012437 ! epithelial-mesenchymal boundary relationship: part_of UBERON:2001269 ! regenerating fin/limb [Term] id: UBERON:2001389 name: regeneration epithelium of fin/limb def: "An epithelium that is part of a regenerating fin/limb." [OBOL:automatic] subset: efo_slim synonym: "epidermal cap" BROAD [ZFA:0001389] synonym: "epidermal cap of fin" EXACT [] synonym: "wound epidermis" BROAD [ZFA:0001389] synonym: "wound epidermis of fin" EXACT [] synonym: "wound epithelium" BROAD [ZFA:0001389] synonym: "wound epithelium of fin" EXACT [] xref: EFO:0003682 xref: TAO:0001389 xref: ZFA:0001389 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:2001269 ! regenerating fin/limb [Term] id: UBERON:2001391 name: anterior lateral line ganglion def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] subset: efo_slim synonym: "anterior lateral line ganglia" RELATED OMO:0003004 [TAO:0001391] xref: EFO:0003683 xref: TAO:0001391 xref: ZFA:0001391 is_a: UBERON:2000120 ! lateral line ganglion relationship: part_of UBERON:2001468 ! anterior lateral line system [Term] id: UBERON:2001392 name: parapophysis 1 def: "Parapophysis that is the lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996)." [ZFIN:curator] synonym: "basipophysis 1" EXACT [TAO:0001392] synonym: "lateral process 1" EXACT [TAO:0001392] xref: ZFA:0001392 is_a: UBERON:0003109 ! parapophysis is_a: UBERON:0011370 ! transverse process of atlas property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001393 name: parapophysis 2 def: "Parapophysis that is lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996)." [ZFIN:curator] synonym: "basipophysis" EXACT [TAO:0001393] synonym: "lateral process 2" EXACT [TAO:0001393] xref: ZFA:0001393 is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:0001093 ! vertebral bone 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001394 name: neural arch 3 def: "Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal." [ZFIN:curator] xref: ZFA:0001394 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:2001169 ! vertebral element 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001395 name: neural arch 4 def: "Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex." [ZFIN:curator] xref: ZFA:0001395 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001396 name: parapophysis + rib of vertebra 4 def: "The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface." [ZFIN:curator] synonym: "fourth pleural rib plus parapophysis" EXACT [TAO:0001396] synonym: "fourth rib plus parapophysis" EXACT [TAO:0001396] synonym: "parapophysis/rib" EXACT [TAO:0001396] xref: ZFA:0001396 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001397 name: post-Weberian supraneural def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians." [ZFIN:curator] xref: ZFA:0001397 is_a: UBERON:2000442 ! supraneural bone relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001403 name: supraethmoid def: "Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anterolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal." [TAO:GA_TG] xref: ZFA:0001403 is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003112 ! olfactory region relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001404 name: preethmoid bone def: "Small rounded to egg-shaped cartilage bone that sits in an anterolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [ZFIN:curator] xref: ZFA:0001404 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0011242 ! ethmoid cartilage relationship: part_of UBERON:0003112 ! olfactory region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001406 name: kinethmoid bone def: "Sesamoid bone located in the premaxillary-ethmoid ligament, between the mesethmoid and the premaxilla. The kinethmoid is an unpaired median bone." [TAO:GA_TG, ZFIN:curator] comment: The kinethmoid is part of the protrusion mechanism of the upper jaw and is restricted to cypriniform fishes. synonym: "kinethmoideum bone" EXACT [TAO:0001406] xref: ZFA:0001406 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003112 ! olfactory region relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001407 name: infraorbital 2 def: "Infraorbital that is the second bone of the infraorbital series." [ZFIN:curator] xref: ZFA:0001407 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001408 name: infraorbital 3 def: "Infraorbital that is the third bone of the infraorbital series." [ZFIN:curator] xref: ZFA:0001408 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001409 name: infraorbital 4 def: "Infraorbital that is the fourth bone of the infraorbital series." [ZFIN:curator] xref: ZFA:0001409 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001412 name: epiotic alt_id: UBERON:2000659 def: "Endochondral bone that borders that medial edge of the posttemporal fossa. The epiotics are sutured to parietals and supraoccipital dorsally, the exoccipitals ventrally and the pterotics laterally. The epiotic is a paired bone." [ZFIN:curator] synonym: "epioccipital" EXACT [TAO:0001412] synonym: "epioccipitals" EXACT OMO:0003004 [TAO:0001412] xref: ZFA:0001412 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule relationship: part_of UBERON:0003110 ! otic region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001415 name: pelvic fin distal radial bone 2 def: "Pelvic fin distal radial 2 element that is composed of bone tissue." [OBOL:automatic] xref: ZFA:0001415 is_a: UBERON:1500008 ! pelvic fin distal radial bone is_a: UBERON:2101415 ! pelvic fin distal radial element 2 relationship: develops_from UBERON:2201415 ! pelvic fin distal radial cartilage 2 [Term] id: UBERON:2001416 name: pelvic fin distal radial bone 3 def: "Pelvic fin distal radial 3 element that is composed of bone tissue." [OBOL:automatic] xref: ZFA:0001416 is_a: UBERON:1500008 ! pelvic fin distal radial bone is_a: UBERON:2101416 ! pelvic fin distal radial element 3 relationship: develops_from UBERON:2201416 ! pelvic fin distal radial cartilage 3 [Term] id: UBERON:2001417 name: pelvic fin distal radial bone 1 def: "Pelvic fin distal radial 1 element that is composed of bone tissue." [OBOL:automatic] xref: ZFA:0001417 is_a: UBERON:1500008 ! pelvic fin distal radial bone is_a: UBERON:2101417 ! pelvic fin distal radial element 1 relationship: develops_from UBERON:2201417 ! pelvic fin distal radial cartilage 1 [Term] id: UBERON:2001418 name: obsolete dorsal fin lepidotrichium def: "Lepidotrichium which is part of the dorsal fin." [ZFIN:curator] synonym: "dorsal fin lepidotrichia" EXACT OMO:0003004 [TAO:0001418] synonym: "dorsal fin ray" EXACT [TAO:0001418] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000177 [Term] id: UBERON:2001419 name: dorsal fin pterygiophore def: "A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18." [ZFIN:curator] synonym: "dorsal fin pterygiophores" EXACT OMO:0003004 [TAO:0001419] synonym: "dorsal fin support" EXACT [TAO:0001419] xref: ZFA:0001419 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000168 ! dorsal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001420 name: anal fin pterygiophore def: "A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21." [ZFIN:curator] synonym: "anal fin pterygiophores" EXACT OMO:0003004 [TAO:0001420] xref: ZFA:0001420 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000166 ! anal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001421 name: obsolete anal fin lepidotrichium def: "Lepidotrichium which is part of the anal fin." [ZFIN:curator] synonym: "anal fin lepidotrichia" EXACT OMO:0003004 [TAO:0001421] synonym: "anal fin ray" EXACT [TAO:0001421] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000176 [Term] id: UBERON:2001425 name: basal plate cartilage xref: ZFA:0001425 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0009635 ! parachordal cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001426 name: posterior naris synonym: "posterior nostril" EXACT [TAO:0001426] xref: ZFA:0001426 is_a: UBERON:0005928 ! external naris property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001427 name: anterior naris synonym: "anterior nostril" EXACT [TAO:0001427] xref: ZFA:0001427 is_a: UBERON:0005928 ! external naris property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001428 name: olfactory rosette synonym: "nasal rosette" EXACT [TAO:0001428] xref: ZFA:0001428 is_a: UBERON:0019306 ! nose epithelium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001430 name: pneumatic duct def: "A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001430 is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0001043 ! esophagus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001431 name: primitive olfactory epithelium xref: ZFA:0001431 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003050 ! olfactory placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001432 name: anterior sclerotic bone def: "Sclerotic bone that is located anterior to the eye." [TAO:wd] xref: ZFA:0001432 is_a: UBERON:0010297 ! endochondral scleral ossicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001433 name: posterior sclerotic bone def: "Sclerotic bone that is located posterior to the eye." [TAO:wd] xref: ZFA:0001433 is_a: UBERON:0010297 ! endochondral scleral ossicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001437 name: ductus communicans def: "The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001437 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0006860 ! swim bladder property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001450 name: apical ectodermal ridge pelvic fin def: "Apical ectodermal ridge that is part of the pelvic fin." [ZFIN:curator] xref: ZFA:0001450 is_a: UBERON:0004356 ! apical ectodermal ridge relationship: develops_from UBERON:0005422 ! pelvic appendage apical ectodermal ridge relationship: part_of UBERON:0000152 ! pelvic fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001456 name: pectoral fin endoskeletal disc def: "A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998)." [ZFIN:curator] synonym: "fin plate cartilage" EXACT [TAO:0001456] xref: ZFA:0001456 is_a: UBERON:0007390 ! pectoral appendage cartilage tissue relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001457 name: postcranial axial cartilage def: "Cartilage which is part of the axial skeleton." [ZFIN:curator] xref: ZFA:0001457 is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001462 name: obsolete somite border synonym: "somite border cell" EXACT OMO:0003004 [TAO:0001462] xref: ZFA:0001462 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0015178 [Term] id: UBERON:2001463 name: melanophore stripe synonym: "bar" EXACT [] synonym: "melanophore bar" EXACT [] synonym: "stripe" EXACT [TAO:0001463] synonym: "stripes" EXACT OMO:0003004 [TAO:0001463] xref: ZFA:0001463 is_a: UBERON:2002284 ! body marking property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001467 name: pharyngeal mesoderm xref: ZFA:0001467 is_a: UBERON:0000926 ! mesoderm relationship: part_of UBERON:0001042 ! chordate pharynx property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001468 name: anterior lateral line system def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] subset: efo_slim xref: EFO:0003691 xref: TAO:0001468 xref: ZFA:0001468 is_a: UBERON:0002540 ! lateral line system [Term] id: UBERON:2001470 name: anterior lateral line def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [ZFIN:curator] xref: TAO:0001470 xref: ZFA:0001470 is_a: UBERON:0010202 ! lateral line relationship: develops_from UBERON:2005117 ! anterior lateral line primordium relationship: part_of UBERON:2001468 ! anterior lateral line system [Term] id: UBERON:2001471 name: posterior lateral line system def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] xref: ZFA:0001471 is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001472 name: anterior lateral line neuromast def: "Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast anterior" EXACT [TAO:0001472] xref: ZFA:0001472 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001473 name: obsolete deep blastomere def: "Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001473 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: ZFA:0001473 [Term] id: UBERON:2001474 name: sublingual dorsal and ventral separate def: "Anatomical cluster consisting of the paired sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001475 name: sublingual dorsal ossification def: "Sublingual that is the dorsal element paired with the sublingual ventral ossification." [TAO:wd] is_a: UBERON:2001275 ! sublingual bone relationship: develops_from UBERON:2001532 ! sublingual dorsal cartilage relationship: part_of UBERON:2001474 ! sublingual dorsal and ventral separate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001476 name: sublingual ventral ossification def: "Sublingual that is the ventral element paired with the sublingual dorsal ossification." [TAO:wd] is_a: UBERON:2001275 ! sublingual bone relationship: develops_from UBERON:2001545 ! sublingual ventral cartilage relationship: part_of UBERON:2001474 ! sublingual dorsal and ventral separate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001480 name: dorsal anterior lateral line nerve def: "Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts." [ZFIN:curator] xref: ZFA:0001480 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000425 ! anterior lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001481 name: ventral anterior lateral line nerve def: "Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts." [ZFIN:curator] xref: ZFA:0001481 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000425 ! anterior lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001482 name: middle lateral line nerve def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [ZFIN:curator] xref: ZFA:0001482 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000175 ! posterior lateral line nerve relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001483 name: middle lateral line ganglion def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [ZFIN:curator] xref: ZFA:0001483 is_a: UBERON:2000120 ! lateral line ganglion relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001484 name: obsolete superficial blastomere def: "Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] xref: ZFA:0001484 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: ZFA:0001484 [Term] id: UBERON:2001502 name: epiphyseal bar def: "Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar." [ZFIN:curator] xref: ZFA:0001502 is_a: UBERON:0003932 ! cartilage element of chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001504 name: occipital arch cartilage def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [ZFIN:curator] xref: ZFA:0001504 is_a: UBERON:0003932 ! cartilage element of chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001505 name: taenia marginalis anterior def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anterolatera1 edge of the ethmoid plate." [ZFIN:curator] synonym: "orbital cartilage" RELATED [TAO:0001505] xref: ZFA:0001505 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0003111 ! sphenoid region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001508 name: trabecula communis def: "Cartilage formed via medial fusion between bilaterally paired trabecula crani." [ZFIN:curator] xref: ZFA:0001508 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0005945 ! neurocranial trabecula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001511 name: interhyal cartilage alt_id: UBERON:2000218 def: "Pharyngeal arch cartilage that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [ZFIN:curator] comment: It articulates ventrally with the posterior end of the ceratohyal cartilage or the posterior ceratohyal. synonym: "stylohyal cartilage" EXACT [TAO:0001511] xref: ZFA:0001511 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001892 ! interhyal element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001515 name: taenia marginalis posterior def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [ZFIN:curator] synonym: "orbital cartilage" RELATED [TAO:0001515] xref: ZFA:0001515 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0003111 ! sphenoid region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001516 name: ceratobranchial cartilage def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [ZFIN:curator] xref: ZFA:0001516 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001898 ! ceratobranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001517 name: ceratobranchial 2 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] xref: ZFA:0001517 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001900 ! ceratobranchial 2 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001518 name: ceratobranchial 3 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] xref: ZFA:0001518 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001901 ! ceratobranchial 3 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001519 name: ceratobranchial 4 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] xref: ZFA:0001519 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001902 ! ceratobranchial 4 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001520 name: ceratobranchial 1 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] xref: ZFA:0001520 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001899 ! ceratobranchial 1 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001521 name: ceratobranchial 5 cartilage def: "Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage." [ZFIN:curator] xref: ZFA:0001521 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001903 ! ceratobranchial 5 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001522 name: hypobranchial cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] comment: The hypobranchial cartilage usually articulates medially with a basibranchial bone or cartilage. xref: ZFA:0001522 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001893 ! hypobranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001523 name: hypobranchial 4 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] xref: ZFA:0001523 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001897 ! hypobranchial 4 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001524 name: hypobranchial 1 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] xref: ZFA:0001524 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001894 ! hypobranchial 1 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001525 name: hypobranchial 2 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] xref: ZFA:0001525 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001895 ! hypobranchial 2 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001526 name: hypobranchial 3 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] xref: ZFA:0001526 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001896 ! hypobranchial 3 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001527 name: epibranchial cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone." [TAO:wd] xref: ZFA:0001527 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001904 ! epibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001528 name: epibranchial 1 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] xref: ZFA:0001528 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001905 ! epibranchial 1 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001529 name: epibranchial 3 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] xref: ZFA:0001529 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001907 ! epibranchial 3 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001530 name: epibranchial 2 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] xref: ZFA:0001530 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001906 ! epibranchial 2 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001531 name: epibranchial 4 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] xref: ZFA:0001531 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001908 ! epibranchial 4 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001532 name: sublingual dorsal cartilage def: "Sublingual cartilage that is the dorsal element paired with the sublingual ventral cartilage." [TAO:wd] is_a: UBERON:2001544 ! sublingual cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001533 name: pharyngobranchial cartilage def: "Paired cartilages that project medially from the medial tips of epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial cartilage" EXACT [] xref: ZFA:0001533 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001909 ! pharyngobranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001534 name: pharyngobranchial 3 cartilage def: "Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [ZFIN:curator] xref: ZFA:0001534 is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001912 ! pharyngobranchial 3 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001535 name: median fin cartilage xref: ZFA:0001535 is_a: UBERON:2001457 ! postcranial axial cartilage relationship: part_of UBERON:4000170 ! median fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001536 name: pharyngobranchial 2 cartilage def: "Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [ZFIN:curator] xref: ZFA:0001536 is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001911 ! pharyngobranchial 2 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001537 name: mesocoracoid cartilage def: "Pectoral fin cartilage that is part of the embryonic primary pectoral girdle from which the mesocoracoid bone will ossify endochondrally." [TAO:GA_TG, ZFIN:curator] synonym: "mesocoracoideum" RELATED [TAO:0001537] xref: ZFA:0001537 is_a: UBERON:0007844 ! cartilage element is_a: UBERON:4300092 ! mesocoracoid element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001538 name: pelvic radial cartilage def: "Small cartilage that forms at the posterior edge of the basipterygium." [ZFIN:curator] comment: TO DO: reconcile cartilage elements of fin with bony elements (e.g. develops from and labeling). synonym: "pelvic fin radial cartilage" EXACT [] xref: ZFA:0001538 is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0000152 ! pelvic fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001539 name: basipterygium cartilage def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [ZFIN:curator] xref: ZFA:0001539 is_a: UBERON:0007844 ! cartilage element is_a: UBERON:2100623 ! basipterygium element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001540 name: pelvic radial 3 cartilage def: "Small cartilage that forms at the posterior and medial edge of the basipterygium." [ZFIN:curator] xref: ZFA:0001540 is_a: UBERON:2001538 ! pelvic radial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001541 name: pelvic radial 2 cartilage def: "Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2." [ZFIN:curator] xref: ZFA:0001541 is_a: UBERON:2001538 ! pelvic radial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001542 name: pelvic radial 1 cartilage def: "Small cartilage that forms at the posterior and lateral edge of the basipterygium." [ZFIN:curator] xref: ZFA:0001542 is_a: UBERON:2001538 ! pelvic radial cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001544 name: sublingual cartilage def: "Pharyngeal arch cartilage that is the median cartilage of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001545 name: sublingual ventral cartilage def: "Sublingual cartilage that is the ventral element paired with the sublingual dorsal cartilage." [TAO:wd] is_a: UBERON:2001544 ! sublingual cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001546 name: neural spine 4 def: "Neural spine that is associated with the fourth vertebra." [TAO:wd] xref: ZFA:0001600 is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001547 name: abdominal scute def: "Scute that is a bony plate that forms in the midline of ventral body margin between pectoral girdle and anal fin. Abdominal scutes may be present both anterior to and posterior to the pelvic girdle and fin." [TAO:wd] is_a: UBERON:2002294 ! fish scute relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:2001254 ! abdominal scute series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001548 name: intercalarium ascending process xref: ZFA:0001602 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000525 ! intercalarium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001550 name: obsolete caudal fin lepidotrichium def: "Lepidotrichium which is part of the caudal fin." [ZFIN:curator] synonym: "caudal fin ray" EXACT [TAO:0001550] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000174 [Term] id: UBERON:2001551 name: obsolete pectoral fin lepidotrichium def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally." [TAO:GA_TG, ZFIN:curator] comment: Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. synonym: "pectoral fin lepidotrichia" EXACT OMO:0003004 [TAO:0001551] synonym: "pectoral fin ray" EXACT [TAO:0001551] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000175 [Term] id: UBERON:2001552 name: obsolete pelvic fin lepidotrichium def: "Lepidotrichium which is part of the pelvic fin." [ZFIN:curator] synonym: "pelvic fin lepidotrichia" EXACT OMO:0003004 [TAO:0001552] synonym: "pelvic fin ray" EXACT [TAO:0001552] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000173 [Term] id: UBERON:2001553 name: manubrium synonym: "intercalarium anterior process" EXACT [DOI:10.1002/dvdy.10387] synonym: "intercalarium horizontal process" EXACT [DOI:10.1111/j.1096-3642.1981.tb01575.x] synonym: "manubrium incudus" EXACT [TAO:Bird_2003] xref: MESH:D008371 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001601 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000461 ! Weberian ossicle relationship: part_of UBERON:2000525 ! intercalarium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001554 name: obsolete lepidotrichium def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [ZFIN:curator] synonym: "fin ray" EXACT [TAO:0001554] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:4000172 [Term] id: UBERON:2001560 name: hypural 1 xref: ZFA:0001560 is_a: UBERON:2000364 ! hypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001561 name: hypural 2 xref: ZFA:0001561 is_a: UBERON:2000364 ! hypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001562 name: hypural 3 xref: ZFA:0001562 is_a: UBERON:2000364 ! hypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001563 name: hypural 4 xref: ZFA:0001563 is_a: UBERON:2000364 ! hypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001564 name: hypural 5 xref: ZFA:0001564 is_a: UBERON:2000364 ! hypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001565 name: obsolete oocyte stage II xref: ZFA:0001565 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: CL:0000023 [Term] id: UBERON:2001566 name: obsolete oocyte stage III xref: ZFA:0001566 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: CL:0000023 [Term] id: UBERON:2001567 name: obsolete oocyte stage I xref: ZFA:0001567 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: CL:0000023 [Term] id: UBERON:2001568 name: obsolete oocyte stage IV xref: ZFA:0001568 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: CL:0000023 [Term] id: UBERON:2001569 name: obsolete oocyte stage V synonym: "mature egg" EXACT [TAO:0001569] synonym: "unactivated egg" EXACT [TAO:0001569] xref: ZFA:0001569 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: CL:0000023 [Term] id: UBERON:2001570 name: obsolete unfertilized egg synonym: "activated oocyte" EXACT [TAO:0001570] xref: ZFA:0001570 is_obsolete: true replaced_by: CL:0000025 [Term] id: UBERON:2001571 name: postovulatory follicle subset: human_reference_atlas xref: ZFA:0001571 is_a: UBERON:0001305 ! ovarian follicle relationship: present_in_taxon NCBITaxon:9606 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001577 name: premaxilla ascending process def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [ZFIN:curator] xref: ZFA:0001577 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001578 name: anterior dorsomedial process of autopalatine def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [ZFIN:curator] xref: ZFA:0001578 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:2000620 ! autopalatine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001579 name: ural vertebra 2 def: "Ural vertebra that is the second vertebra posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 2 (polyural terminology). Ural vertebra 2 is an unpaired median bone." [TAO:GA_TG] comment: Ural vertebrae 2 may be defined also as the second ural vertebrae bearing hypurals 3 or 3 and 4 or 3 plus more dorsal hypurals (diural terminology). xref: ZFA:0001579 is_a: UBERON:2002162 ! ural vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001581 name: ural centrum 2 def: "A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone." [TAO:GA_TG] comment: Ural centrum 2 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent, and with hypural 2 ventrally. Ural centrum 2 may be defined also as the second ural centrum bearing hypurals 3 or 3 and 4 or 3, 4 and more dorsal hypurals (diural terminology). xref: ZFA:0001581 is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:2002085 ! ural centrum relationship: part_of UBERON:2001579 ! ural vertebra 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001582 name: non-Weberian precaudal vertebra xref: ZFA:0001582 is_a: UBERON:4300223 ! precaudal vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001583 name: preural centrum 1+ ural centrum 1 def: "Urostyle that is the result of fusion of preural centrum 1 with the first ural centrum (of polyural terminology)." [TAO:GA_TG] xref: ZFA:0001583 is_a: UBERON:0003106 ! urostyle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001584 name: caudal procurrent ray def: "Caudal fin lepidotrichium that form part of the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or an epural or an uroneural (dorsal series) and with a haemal spine of a preural vertebra (ventral series). Caudal procurrent rays are shorter than the caudal principal rays. A caudal procurrent ray is an unpaired median bone." [TAO:Arratia_2008, TAO:GA_TG] synonym: "caudal precurrent ray" EXACT [TAO:0001584] synonym: "caudal procurrent lepidotrichium" EXACT [TAO:0001584] synonym: "caudal spiny ray" EXACT [TAO:0001584] synonym: "rudimentary ray" EXACT [TAO:0001584] xref: ZFA:0001584 is_a: UBERON:4000174 ! caudal fin lepidotrichium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001585 name: caudal principal ray def: "Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented-and-branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone." [TAO:GA_TG, TAO:wd] comment: Counts of caudal principal rays are taken as the number of branched rays plus two adjacent unbranched rays and counts are typically reported as, for example: 1,8,7,1 (1 unbranched and 8 branched upper rays, 7 branched and 1 unbranched lower rays). A caudal principal caudal ray may be associated with one or more hypurals or with hemal spines of preural centra 1 and 2 (Schultze and Arratia, 1989; Arratia, 2008). In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). synonym: "caudal fin principal ray" EXACT [TAO:0001585] synonym: "caudal principal lepidotrichium" EXACT [TAO:0001585] xref: ZFA:0001585 is_a: UBERON:4000174 ! caudal fin lepidotrichium relationship: part_of UBERON:2002164 ! caudal principal ray set property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001586 name: pectoral fin radial bone def: "Pectoral fin radial element that is composed of bone tissue." [OBOL:automatic] comment: There are two paired series of pectoral radials, the proximal and the distal ones that may have variable shapes and sizes. synonym: "pectoral actinost" EXACT [TAO:0001586] xref: ZFA:0001586 is_a: UBERON:0010741 ! bone of pectoral complex is_a: UBERON:1500006 ! paired fin radial bone is_a: UBERON:2101586 ! pectoral fin radial element relationship: develops_from UBERON:2201586 ! pectoral fin radial cartilage [Term] id: UBERON:2001587 name: pectoral fin proximal radial bone def: "Pectoral fin proximal radial element that is composed of bone tissue." [OBOL:automatic] comment: Two to four flat or slightly rod-like proximal pectoral radials, bilaterally, can be found in teleosts. Pectoral proximal radials are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radials is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). synonym: "pectoral actinost" RELATED [] xref: ZFA:0001587 is_a: UBERON:2001586 ! pectoral fin radial bone is_a: UBERON:2101587 ! pectoral fin proximal radial element relationship: develops_from UBERON:2201587 ! pectoral fin proximal radial cartilage [Term] id: UBERON:2001588 name: pectoral fin distal radial bone def: "Pectoral fin distal radial element that is composed of bone tissue." [OBOL:automatic] comment: A variable number of pectoral distal radials may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. xref: ZFA:0001588 is_a: UBERON:2001586 ! pectoral fin radial bone is_a: UBERON:2101588 ! pectoral fin distal radial element relationship: develops_from UBERON:2201588 ! pectoral fin distal radial cartilage [Term] id: UBERON:2001589 name: propterygium cartilage def: "The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula." [TAO:GA_TG] comment: The cartilaginous propterygium may partially ossify and fuse to the base of the pectoral hemilepidotrichium 1 in teleosts, but remains as a separate element in non-teleostean fishes. synonym: "pectoral propterygium" EXACT [TAO:0001589] xref: ZFA:0001589 is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage is_a: UBERON:4300083 ! propterygium element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001592 name: claustrum bone def: "Endochondral bone, membrane bone, and Weberian ossicle that is located dorsal to the scaphium. The claustrum bone is bilaterally paired." [ZFIN:curator] synonym: "first Weberian ossicle" EXACT [TAO:0001592] xref: ZFA:0001592 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:4300190 ! claustrum element relationship: develops_from UBERON:2000637 ! claustrum cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001593 name: caudal fin upper lobe def: "Surface structure that is the dorsal portion of the caudal fin." [TAO:wd] synonym: "caudal fin dorsal lobe" EXACT [TAO:0001593] xref: ZFA:0001604 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:4000164 ! caudal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001594 name: caudal fin lower lobe def: "Surface structure that is the ventral portion of the caudal fin." [TAO:wd] synonym: "caudal fin ventral lobe" EXACT [TAO:0001594] xref: ZFA:0001605 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:4000164 ! caudal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001603 name: maxilla ascending process def: "Process that is the upper portion of the maxilla that rests on the posterior surface of the lateral portion of the premaxilla." [TAO:wd] comment: Synonyms maxilla ascending arm used in Zanata and Vari 2005, and maxilla upper arm used in Weitzman 1962 synonym: "maxilla ascending arm" EXACT [TAO:0001603] synonym: "maxilla upper arm" EXACT [TAO:0001603] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001604 name: lateral ethmoid palatine process def: "Lateral bony projection proximal to lateral ethmoid-palatine joint, and located anterior to orbital region and posterior to olfactory region." [TAO:wd] synonym: "antorbital process" RELATED [TAO:0001604] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:2000226 ! lateral ethmoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001605 name: caudal scute series is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001606 name: caudal scute def: "Scute that is a median bony plate forming anterior to procurrent caudal fin rays." [TAO:wd] is_a: UBERON:2002294 ! fish scute relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:2001605 ! caudal scute series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001607 name: basipterygoid process of parasphenoid def: "Process that is the paired process of the parasphenoid that articulates with the suspensorium." [TAO:wd] synonym: "basipterygoid process" EXACT [TAO:0001607] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0004745 ! parasphenoid property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001608 name: autopalatine-lateral ethmoid joint def: "Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired." [TAO:wd] xref: ZFA:0005420 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001609 name: pharyngobranchial 2 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 2 bone." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001250 ! pharyngobranchial 2 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001610 name: quadrate dorsal process def: "An endochondral bone that is the dorsally-oriented bony extension of the quadrate, extending from the anterior portion of the bone." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. synonym: "quadrate superior arm" EXACT [TAO:0001610] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001611 name: quadrate posterodorsal process def: "Process that is the posterior extension of the quadrate and located dorsal to the quadrate ventral process." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001612 name: sensory canal def: "Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromast organs." [TAO:wd] comment: Sensory canals usually communicate with the environment via pores in the sensory canal or at the distal ends of tubules, which extend from canal where pores would otherwise be. synonym: "lateral line canal" EXACT [TAO:0001612] synonym: "lateral-line canal" EXACT [TAO:0001612] xref: ZFA:0005443 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001613 name: dorsal fin middle radial bone def: "Dorsal fin middle radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] comment: Synonym dorsal fin medial radial from Weitzman, 1962. synonym: "dorsal fin medial radial" EXACT [TAO:0001613] is_a: UBERON:2001672 ! dorsal fin radial bone is_a: UBERON:2101613 ! dorsal fin middle radial element relationship: develops_from UBERON:2201613 ! dorsal fin middle radial cartilage [Term] id: UBERON:2001614 name: anal fin middle radial bone def: "Anal fin middle radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] comment: Synonym anal fin medial radial from Weitzman, 1962. synonym: "anal fin medial radial" EXACT [TAO:0001614] synonym: "medial anal-fin radial" EXACT [TAO:0001614] is_a: UBERON:2001671 ! anal fin radial bone is_a: UBERON:2101614 ! anal fin middle radial element relationship: develops_from UBERON:2201614 ! anal fin middle radial cartilage [Term] id: UBERON:2001615 name: sphenotic spine def: "Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired." [TAO:GA_TG] synonym: "sphenotic process" EXACT [TAO:0001615] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000587 ! sphenotic property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001616 name: lateral ethmoid wing def: "Superficial and lateral bony projection anterior to orbital region. Sometimes with superficial ornamentation where in direct contact with skin." [TAO:wd] comment: Synonym of lateral ethmoid wing: lateral ethmoid ventral wing (characiforms). synonym: "lateral ethmoid ventral wing" EXACT [TAO:0001616] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000226 ! lateral ethmoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001617 name: trunk sensory canal def: "Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to or onto the caudal fin. The trunk sensory canal is bilaterally paired." [TAO:wd] comment: Pores frequently piercing scales if present; occasionally enclosed in bony ossicles. synonym: "trunk lateral line canal" EXACT [TAO:0001617] xref: ZFA:0005444 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001872 ! trunk sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001619 name: post-otic sensory canal def: "Sensory canal between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. synonym: "post-temporal canal" EXACT [TAO:0001619] xref: ZFA:0005394 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001620 name: lagenar capsule def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [TAO:wd] xref: ZFA:0001627 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0003128 ! cranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001622 name: odontode def: "Multi-tissue structure composed of enameloid and dentine surrounding a pulp cavity, and found either attached to dermal bone or freely in the skin." [TAO:wd] synonym: "odontodes" EXACT OMO:0003004 [TAO:0001622] is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001623 name: type 1 odontode def: "Odontode that is attached to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. is_a: UBERON:2001622 ! odontode relationship: part_of UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001624 name: type 2 odontode def: "Odontode that is attached to the skin and without association to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. is_a: UBERON:2001622 ! odontode relationship: part_of UBERON:0002199 ! integument property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001626 name: premaxillary tooth def: "Tooth that is attached to the premaxilla." [TAO:wd] is_a: UBERON:0003267 ! tooth of upper jaw property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001629 name: otic sensory canal def: "Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. xref: ZFA:0005393 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001630 name: supratemporal sensory canal alt_id: UBERON:2001618 def: "Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired." [TAO:wd] synonym: "occipital canal" EXACT [TAO:0001630] synonym: "occipital sensory canal" EXACT [TAO:0001630] synonym: "supratemporal canal" EXACT [TAO:0001630] xref: ZFA:0005445 is_a: UBERON:2001612 ! sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001632 name: ectopterygoid tooth def: "Tooth that is attached to the ectopterygoid bone." [TAO:wd] is_a: UBERON:0012070 ! palatal tooth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001633 name: entopterygoid tooth def: "Tooth that is attached to the entopterygoid bone." [TAO:wd] synonym: "mesopterygoid tooth" EXACT [TAO:0001633] is_a: UBERON:0001091 ! calcareous tooth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001634 name: pharyngobranchial 1 cartilage def: "Most anterior pharyngobranchial cartilage, located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial 1 cartilage" EXACT [TAO:0001634] is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001910 ! pharyngobranchial 1 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001635 name: pharyngobranchial 1 bone def: "Most anterior pharyngobranchial bone, located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial 1 bone" EXACT [TAO:0001635] is_a: UBERON:2000527 ! pharyngobranchial bone is_a: UBERON:2001910 ! pharyngobranchial 1 element relationship: develops_from UBERON:2001634 ! pharyngobranchial 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001636 name: pharyngobranchial 4 bone def: "Most posterior pharyngobranchial bone, located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial 4 bone" EXACT [TAO:0001636] is_a: UBERON:2000527 ! pharyngobranchial bone is_a: UBERON:2001913 ! pharyngobranchial 4 element relationship: develops_from UBERON:2001251 ! pharyngobranchial 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001640 name: notochordal ossification def: "Perichordal bone that surrounds the anterior tip of the notochord." [TAO:wd] xref: ZFA:0001631 is_a: UBERON:0008909 ! perichordal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001647 name: pharyngeal tooth plate def: "Dermal bone of the pharyngeal arches usually bearing teeth." [TAO:wd] synonym: "pharyngeal toothplate" EXACT [TAO:0001647] synonym: "tooth plate" EXACT [] synonym: "toothplate" EXACT [] is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001648 name: basihyal tooth plate def: "Pharyngeal tooth plate that lies dorsal to the basihyal cartilage or bone." [TAO:wd] synonym: "basihyal toothplate" EXACT [TAO:0001648] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001649 name: basihyal tooth def: "Tooth that is attached to the basihyal tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001648 ! basihyal tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001650 name: pharyngobranchial 2 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 2 bone." [TAO:wd] synonym: "pharyngobranchial 2 toothplate" EXACT [TAO:0001650] is_a: UBERON:2002015 ! pharyngobranchial tooth plate relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001651 name: pharyngobranchial 2 tooth def: "Tooth that is attached to the pharyngobranchial 2 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001650 ! pharyngobranchial 2 tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001652 name: pharyngobranchial 3 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 3 bone." [TAO:wd] synonym: "pharyngobranchial 3 toothplate" EXACT [TAO:0001652] is_a: UBERON:2002015 ! pharyngobranchial tooth plate relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001653 name: pharyngobranchial 3 tooth def: "Tooth that is part of the pharyngobranchial 3 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001652 ! pharyngobranchial 3 tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001654 name: upper pharyngeal 4 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4, and located anterior to upper pharyngeal 5 tooth plate." [TAO:wd] synonym: "upper pharyngeal 4 toothplate" EXACT [TAO:0001654] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001655 name: upper pharyngeal 4 tooth def: "Tooth that is attached to the upper pharyngeal 4 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001654 ! upper pharyngeal 4 tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001656 name: upper pharyngeal 5 tooth plate def: "Pharyngeal toothplate that lies ventral to pharyngobranchial 4, and located posterior to upper pharyngeal 4 tooth plate." [TAO:wd] synonym: "upper pharyngeal 5 toothplate" EXACT [TAO:0001656] is_a: UBERON:2001647 ! pharyngeal tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001657 name: upper pharyngeal 5 tooth def: "Tooth that is attached to the upper pharyngeal 5 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001656 ! upper pharyngeal 5 tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001658 name: upper pharyngeal tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchials 3 and 4." [TAO:wd] comment: This represents the condition found in catfishes. synonym: "upper pharyngeal toothplate" EXACT [TAO:0001658] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001659 name: upper pharyngeal tooth def: "Tooth that is attached to the upper pharyngeal tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001658 ! upper pharyngeal tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001660 name: basibranchial tooth def: "Tooth that is part of the basibranchial tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001661 ! basibranchial tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001661 name: basibranchial tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchials 1-3." [TAO:wd] synonym: "basibranchial 1-3 toothplates" EXACT OMO:0003004 [TAO:0001661] synonym: "basibranchial toothplate" EXACT [TAO:0001661] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001662 name: basibranchial 4 tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchial 4 bone." [TAO:wd] synonym: "basibranchial 4 toothplate" EXACT [TAO:0001662] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001663 name: basibranchial 4 tooth def: "Tooth that is attached to the basibranchial 4 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001662 ! basibranchial 4 tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001664 name: basibranchial 2 tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchial 2 bone." [TAO:wd] synonym: "basibranchial 2 toothplate" EXACT [TAO:0001664] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001665 name: basibranchial 2 tooth def: "Tooth that is attached to the basibranchial 2 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:2001664 ! basibranchial 2 tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001666 name: rudimentary neural arch def: "Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002." [TAO:wd] xref: ZFA:0001641 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:0003106 ! urostyle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001671 name: anal fin radial bone def: "Anal fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0001646 is_a: UBERON:2005225 ! median fin radial bone is_a: UBERON:2101671 ! anal fin radial element relationship: develops_from UBERON:2201671 ! anal fin radial cartilage [Term] id: UBERON:2001672 name: dorsal fin radial bone def: "Dorsal fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0001647 is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:2005225 ! median fin radial bone is_a: UBERON:2101672 ! dorsal fin radial element relationship: develops_from UBERON:2201672 ! dorsal fin radial cartilage [Term] id: UBERON:2001674 name: infraorbital 6 def: "Infraorbital that is the sixth bone of the infraorbital series." [TAO:wd] synonym: "dermosphenotic" RELATED [TAO:0001674] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001675 name: mesethmoid cornu def: "Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft." [TAO:pem] synonym: "cornu" EXACT [TAO:0001675] synonym: "cornua" EXACT OMO:0003004 [TAO:0001675] synonym: "cornuae" EXACT OMO:0003004 [TAO:0001675] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001676 name: mesethmoid-premaxillary joint def: "Joint that articulates the mesethmoid and premaxilla. Mesethmoid-premaxillary joint is paired." [TAO:pem] is_a: UBERON:2001950 ! inter-premaxillary joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001677 name: mesethmoid-nasal joint def: "Joint that articulates the mesethmoid and nasal. Mesethmoid-nasal joint is paired." [TAO:pem] is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001678 name: mesethmoid-frontal joint def: "Joint that articulates the mesethmoid and frontal. Mesethmoid-frontal joint is paired." [TAO:pem] is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001679 name: mesethmoid-lateral ethmoid joint def: "Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired." [TAO:wd] xref: ZFA:0005648 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001680 name: mesethmoid-vomer joint def: "Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired." [TAO:pem] synonym: "mesethmoid-prevomer joint" EXACT [TAO:0001680] xref: ZFA:0005649 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001681 name: cornu mesial process def: "Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu." [TAO:pem] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001675 ! mesethmoid cornu property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001683 name: transcapular ligament def: "Ligament that is attached to supracleithrum and basioccipital." [TAO:wd] synonym: "Baudelot's ligament" EXACT [TAO:0001683] synonym: "transscapular ligament" EXACT [TAO:0001683] is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001684 name: ossified transcapular ligament def: "Membrane bone that is fused to supracleithrum and is jointed to basioccipital and exoccipital." [TAO:pem] synonym: "ossified Baudelot's ligament" EXACT [TAO:0001684] synonym: "ossified transscapular ligament" EXACT [TAO:0001684] is_a: UBERON:0007842 ! membrane bone relationship: develops_from UBERON:2001683 ! transcapular ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001685 name: lateral ethmoid-ectopterygoid ligament def: "Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid." [TAO:wd] xref: ZFA:0005503 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001686 name: bony shelf above orbit def: "The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit." [TAO:wd] xref: ZFA:0005531 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0010323 ! cranial skeletal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001687 name: interopercular-mandibular ligament def: "Interopercular-mandibular ligament is a ligament that connects the interopercle to an element of the lower jaw, typically the retroarticular." [TAO:wd] synonym: "interopercular-retroarticular ligament" EXACT [TAO:0001687] synonym: "interoperculo-mandibular ligament" EXACT [TAO:0001687] synonym: "interoperculomandibular ligament" EXACT [TAO:0001687] xref: ZFA:0005501 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001688 name: palatine cartilage def: "Cartilage that is separate from and anterior to the pterygoquadrate cartilage." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001689 name: pterygoquadrate cartilage def: "Pterygoquadrate cartilage - cartilage that is separate from and posterior to the palatine cartilage." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001690 name: anterior cartilage of palatine def: "Anterior cartilage of palatine - cartilage that caps the anterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001691 name: posterior cartilage of palatine def: "Posterior cartilage of palatine - cartilage that caps the posterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001692 name: median premaxilla def: "Dermal bone that is located in the middle of the upper jaw, independently formed by fusion of tooth bases attached to soft tissue in the middle portion of the upper lip. The median premaxilla bears teeth in adults." [TAO:wd] comment: Recorded in trichomycterid subfamilies Stegophilinae and Vandelliinae (Baskin, 1973). submitted by Mario de Pinna. is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001693 name: protractor operculi def: "Muscle located in the lateral region of the cheek, linking the lateral surface of opercle with the posterolateral margin of the suspensorium (usually the preopercle)." [TAO:wd] comment: Occurs in most members of the Trichomycteridae, except in basal Copionodontinae and Trichogeninae (de Pinna, 1992). is_a: UBERON:0002376 ! cranial muscle relationship: part_of UBERON:0001567 ! cheek property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001694 name: humerovertebral ligament def: "Ligament that links the tip of the postcleithral process of the cleithrum with either the vertebral column (at the vertebral parapophysis or rib of the sixth vertebra) or with the soft tissue around the postcleithral region." [TAO:wd] comment: Recorded in siluriform families Aspredinidae, Amblycipitidae, Akysidae, Sisoridae and Erethistidae (dePinna 1996). Submitted by Mario de Pinna. is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001695 name: mediopharyngobranchial def: "Pharyngeal arch cartilage, elongate and usually bifurcated posteriorly, located anteriorly on the upper branchial arches, attached to the anterior tips of the first infrapharyngobranchials. It supports rows of gill rakers on each side and is not homologous to other structures in the teleost gill-arch skeleton. One or two mediopharyngobranchials may be present." [TAO:wd] comment: Recorded in several Clupeoidei (Nelson, 1967). Submitted by Mario de Pinna. is_a: UBERON:0011004 ! pharyngeal arch cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001696 name: gongyloid cartilage def: "Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial." [TAO:wd] comment: Recorded in Pristigasteridae and Engraulidae, of Clupeiformes, apparently also present in Chanos, of Gonorynchiformes (Di Dario, 2002). is_a: UBERON:0011004 ! pharyngeal arch cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001697 name: transverse radial def: "Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays." [TAO:wd] comment: Recorded in some Cetopsidae, Clariidae and Austroglanididae (Siluriformes) (De Pinna et al., 2007). is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001698 name: anal-fin stay def: "Endochondral bone located posterior to the last anal fin pterygiophore. The anal fin stay is a median bone." [TAO:wd] synonym: "anal fin stay" EXACT [TAO:0001698] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000166 ! anal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001699 name: dorsal-fin stay def: "Endochondral bone located posterior to the last dorsal fin pterygiophore. The dorsal fin stay is a median bone." [TAO:wd] synonym: "dorsal fin stay" EXACT [TAO:0001699] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000168 ! dorsal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001700 name: caudal-fin stay def: "Dermal bone that is located anterior to the caudal fin procurrent rays. Caudal fin stays are unpaired median bones." [TAO:wd] comment: Development of caudal fin stays appears uncertain according to several authors (e.g., Zanata and Vari 2005, Vari 1995). synonym: "caudal fin stay" EXACT [TAO:0001700] is_a: UBERON:0004376 ! fin bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001701 name: basibranchial 5 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). Develops in posterior copula cartilage or basibranchial 5 cartilage." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone is_a: UBERON:2001919 ! basibranchial 5 element relationship: develops_from UBERON:2001866 ! basibranchial 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001702 name: infraorbital 7 def: "Infraorbital that is the seventh bone of the infraorbital series." [TAO:wd] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001703 name: infraorbital 8 def: "Infraorbital that is the eighth bone of the infraorbital series." [TAO:wd] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001704 name: infraorbital 9 def: "Infraorbital that is the ninth bone of the infraorbital series." [TAO:wd] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001705 name: infraorbital 10 def: "Infraorbital that is the tenth bone of the infraorbital series." [TAO:wd] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001706 name: infraorbital 11 def: "Infraorbital that is the eleventh bone of the infraorbital series." [TAO:wd] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001707 name: infraorbital 12 def: "Infraorbital that is the twelfth bone of the infraorbital series." [TAO:wd] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001708 name: dermosphenotic def: "Infraorbital that is the last bone of the infraorbital series, carrying the infraorbital canal, and sometimes also the supraorbital, temporal, and/or preopercular canals. The dermosphenotic is sometimes sutured or fused completely to the skull, e.g. to the autosphenotic." [TAO:wd] synonym: "infraorbital 5" RELATED [TAO:0001708] synonym: "infraorbital 6" RELATED [TAO:0001708] synonym: "infraorbital 7" RELATED [TAO:0001708] synonym: "infraorbital 8" RELATED [TAO:0001708] is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001709 name: infraorbital series def: "Anatomical cluster that is the series of dermal bones surrounding the orbit and associated with the infraorbital sensory canal." [TAO:GA_TG] comment: The infraorbital series may include the antorbital, a variable number of infraorbitals, and dermosphenotic (or posteriormost dorsal infraorbital). The infraorbital series may be formed by seven (primitively) or less bones in teleosts. Consequently, the so called dermosphenotic may correspond to the seventh, sixth or fifth bone, etc., depending on the taxon. synonym: "circumorbital series" RELATED [TAO:0001709] xref: ZFA:0001649 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011156 ! facial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001710 name: opercle-interopercle joint def: "Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired." [TAO:wd] xref: ZFA:0005478 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001711 name: frontal-pterotic joint def: "Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired." [TAO:wd] xref: ZFA:0005468 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001713 name: caudal principal ray 1 def: "Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005512 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001714 name: caudal principal ray 2 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 1." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005514 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001715 name: caudal principal ray 3 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 2." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005513 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001716 name: caudal principal ray 4 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 3." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005515 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001717 name: caudal principal ray 5 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 4." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005516 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001718 name: caudal principal ray 6 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 5." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005517 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001719 name: caudal principal ray 7 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 6." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005518 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001720 name: caudal principal ray 8 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 7." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005519 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001721 name: caudal principal ray 9 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 8." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005520 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001722 name: caudal principal ray 10 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 9." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005521 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001723 name: caudal principal ray 11 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 10." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005522 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001724 name: caudal principal ray 12 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 11." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005523 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001725 name: caudal principal ray 13 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 12." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005595 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001726 name: caudal principal ray 14 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 13." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005524 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001727 name: caudal principal ray 15 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 14." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005525 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001728 name: caudal principal ray 16 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 15." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005526 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001729 name: caudal principal ray 17 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 16." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005527 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001730 name: caudal principal ray 18 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 17." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005528 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001731 name: caudal principal ray 19 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 18." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. xref: ZFA:0005529 is_a: UBERON:2001585 ! caudal principal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001732 name: vertebral element 5 def: "Vertebra that is posteriorly adjacent to vertebra 4." [TAO:wd] xref: ZFA:0005347 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "5" xsd:nonNegativeInteger [Term] id: UBERON:2001733 name: mesethmoid ventral diverging lamella def: "Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones." [TAO:wd] comment: Reference: Weitzman 1962. is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001734 name: posterior process of basipterygium def: "Process that is the posteriorly oriented, paired projection of the basipterygium." [TAO:wd] synonym: "ischiac process" EXACT [TAO:0001734] synonym: "ischiatic process" EXACT [TAO:0001734] synonym: "posterior pelvic process" EXACT [http://hdl.handle.net/10088/11710] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001735 name: scapular foramen def: "Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone." [TAO:wd] comment: Weitzman 1962. xref: ZFA:0005431 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001737 name: coracoid foramen def: "Foramen that is located in the coracoid." [TAO:wd] xref: ZFA:0005426 is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0004743 ! coracoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001739 name: anterior cranial fontanel def: "Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar." [TAO:wd] synonym: "anterior fontanel" RELATED [TAO:0001739] synonym: "frontal fontanel" EXACT [TAO:0001739] synonym: "frontal fontanelle" EXACT [TAO:0001739] is_a: UBERON:0002221 ! fontanelle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001740 name: posterior cranial fontanel def: "Fontanel that is located posterior to the epiphyseal bar, and typically located between the contralateral frontals and parietals (if present) and bordered posteriorly by the supraoccipital." [TAO:wd] synonym: "parietal fontanel" EXACT [TAO:0001740] synonym: "posterior fontanel" RELATED [TAO:0001740] synonym: "posterior fontanelle" RELATED [TAO:0001740] is_a: UBERON:0002221 ! fontanelle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001741 name: trigeminofacial foramen def: "Foramen through which branches of cranial nerves V (trigeminal) and VII (facial) exit." [TAO:wd] comment: i]In some vertebrates there are separate trigeminal foramen and facial foramen. synonym: "trigemino-facialis foramen" EXACT [TAO:0001741] synonym: "trigeminofacial nerve foramen" EXACT [TAO:0001741] synonym: "trigeminofacialis foramen" EXACT [TAO:0001741] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001742 name: auditory foramen def: "Foramen through which cranial nerve VIII (auditory) exits." [TAO:wd] comment: Reference: Weitzman 1962. xref: ZFA:0005419 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001744 name: replacement tooth trench def: "Anatomical space within a bone in which teeth develop." [TAO:wd] synonym: "replacement tooth crypt" EXACT [TAO:0001744] synonym: "replacement tooth crypts" EXACT OMO:0003004 [TAO:0001744] is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001745 name: premaxilla replacement tooth trench def: "Replacement tooth trench that is located in the premaxilla." [TAO:wd] is_a: UBERON:2001744 ! replacement tooth trench property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001746 name: dentary replacement tooth trench def: "Replacement tooth trench that is located in the dentary." [TAO:wd] is_a: UBERON:2001744 ! replacement tooth trench property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001747 name: lateral mesethmoid wing def: "Bony projection located on the anteroventral region of the mesethmoid which articulates with the premaxilla." [TAO:wd] comment: Synonyms: mesethmoid lateral wing (Zanata and Vari 2005) lateral ethmoid wing (Weitzman 1962) premaxillary articular process (Fink and Fink 1996). synonym: "mesethmoid lateral wing" EXACT [TAO:0001747] synonym: "premaxillary articular process" EXACT [TAO:0001747] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001748 name: superficial ophthalmic nerve foramen def: "Foramen through which the superficial ophthalmic nerve passes." [TAO:wd] xref: ZFA:0005432 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001749 name: dentary-anguloarticular joint def: "Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired." [TAO:wd] xref: ZFA:0005464 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001750 name: rib of vertebra 6 def: "Rib that articulates with the parapophysis of the sixth centrum." [TAO:wd] synonym: "sixth pleural rib" EXACT [TAO:0001750] xref: ZFA:0005543 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001751 name: rib of vertebra 5 def: "Rib that articulates with the parapophysis of the fifth centrum." [TAO:wd] synonym: "fifth pleural rib" EXACT [TAO:0001751] xref: ZFA:0005542 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001752 name: pre-narial cartilage def: "The pre-narial cartilage is a cartilage that is located anterior to the anterior naris." [TAO:wd] comment: Chen 1994. is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0011156 ! facial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001753 name: posttemporal fossa def: "Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. The posttemporal fossa in most species has two openings separated by the epioccipital bridge." [ZFIN:ZDB-PUB-961014-192] {comment="http://dx.doi.org/10.1590/S1679-62252010000300001"} comment: Chen 1994 gives these two synonyms: 'temporal fossa', Gauba 1967; and 'temporal groove', Mahajan 1966. synonym: "temporal fossa" RELATED [TAO:0001753] synonym: "temporal groove" EXACT [TAO:0001753] xref: ZFA:0005628 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001754 name: dorsal fin ray 1 synonym: "dorsal fin lepidotrichium 1" EXACT [] xref: ZFA:0005355 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001755 name: dorsal fin ray 2 synonym: "dorsal fin lepidotrichium 2" EXACT [] xref: ZFA:0005356 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001756 name: dorsal fin ray 3 synonym: "dorsal fin lepidotrichium 3" EXACT [] xref: ZFA:0005357 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001757 name: dorsal fin ray 4 synonym: "dorsal fin lepidotrichium 4" EXACT [] xref: ZFA:0005358 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001758 name: dorsal fin ray 5 synonym: "dorsal fin lepidotrichium 5" EXACT [] xref: ZFA:0005359 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001759 name: dorsal fin ray 6 synonym: "dorsal fin lepidotrichium 6" EXACT [] xref: ZFA:0005360 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001760 name: dorsal fin ray 7 synonym: "dorsal fin lepidotrichium 7" EXACT [] xref: ZFA:0005361 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001761 name: pectoral fin ray 1 def: "Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched but occasionally may be a massive strong unsegmented element (e.g., spine)." [TAO:GA_TG] synonym: "pectoral fin lepidotrichium 1" EXACT [] synonym: "pectoral fin ray 1" EXACT [TAO:0001761] xref: ZFA:0005547 is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001762 name: pectoral fin ray 2 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin lepidotrichium 2" EXACT [] synonym: "pectoral fin ray 2" EXACT [TAO:0001762] xref: ZFA:0005548 is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001763 name: pectoral fin ray 3 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin lepidotrichium 3" EXACT [] synonym: "pectoral fin ray 3" EXACT [TAO:0001763] xref: ZFA:0005549 is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001764 name: pectoral fin ray 4 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin lepidotrichium 4" EXACT [] synonym: "pectoral fin ray 4" EXACT [TAO:0001764] xref: ZFA:0005553 is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001765 name: pectoral fin ray 5 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin lepidotrichium 5" EXACT [] synonym: "pectoral fin ray 5" EXACT [TAO:0001765] xref: ZFA:0005552 is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001766 name: pectoral fin ray 6 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin lepidotrichium 6" EXACT [] synonym: "pectoral fin ray 6" EXACT [TAO:0001766] xref: ZFA:0005550 is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001767 name: pectoral fin ray 7 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin lepidotrichium 7" EXACT [] synonym: "pectoral fin ray 7" EXACT [TAO:0001767] xref: ZFA:0005551 is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001768 name: retractor tentaculi def: "Bilaterally paired dorsal hyoid arch muscle that retracts the maxillary barbel." [TAO:wd] is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001769 name: anal fin ray 1 synonym: "anal fin lepidotrichium 1" EXACT [] xref: ZFA:0005399 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001770 name: anal fin ray 2 synonym: "anal fin lepidotrichium 2" EXACT [] xref: ZFA:0005400 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001771 name: anal fin ray 3 synonym: "anal fin lepidotrichium 3" EXACT [] xref: ZFA:0005401 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001772 name: anal fin ray 4 synonym: "anal fin lepidotrichium 4" EXACT [] xref: ZFA:0005402 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001773 name: anal fin ray 5 synonym: "anal fin lepidotrichium 5" EXACT [] xref: ZFA:0005403 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001774 name: anal fin ray 6 synonym: "anal fin lepidotrichium 6" EXACT [] xref: ZFA:0005404 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001775 name: anal fin ray 7 synonym: "anal fin lepidotrichium 7" EXACT [] xref: ZFA:0005405 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001776 name: pelvic fin ray 1 synonym: "pelvic fin lepidotrichium 1" EXACT [] xref: ZFA:0005554 is_a: UBERON:4300117 ! pelvic fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001777 name: pelvic fin ray 2 synonym: "pelvic fin lepidotrichium 2" EXACT [] xref: ZFA:0005555 is_a: UBERON:4300117 ! pelvic fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001778 name: pelvic fin ray 3 synonym: "pelvic fin lepidotrichium 3" EXACT [] xref: ZFA:0005557 is_a: UBERON:4300117 ! pelvic fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001779 name: pelvic fin ray 4 synonym: "pelvic fin lepidotrichium 4" EXACT [] xref: ZFA:0005556 is_a: UBERON:4300117 ! pelvic fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001780 name: pelvic fin ray 5 synonym: "pelvic fin lepidotrichium 5" EXACT [] is_a: UBERON:4300117 ! pelvic fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001781 name: pelvic fin ray 6 synonym: "pelvic fin lepidotrichium 6" EXACT [] is_a: UBERON:4300117 ! pelvic fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001782 name: pelvic fin ray 7 synonym: "pelvic fin lepidotrichium 7" EXACT [] is_a: UBERON:4300117 ! pelvic fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001783 name: supraoccipital crest def: "Process that is part of the supraoccipital. It is a posteriorly directed and unpaired median projection off the posterior margin of the supraoccipital bone." [TAO:GA_TG] comment: The supraoccipital crest may be small and restricted to the dorsal part of the supraoccipital, or may be large and long and extending ventrally to the dorsal margin of the foramen magnum. The supraoccipital crest may be a large process extending above the skull roof in some teleostean subgroups. synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001784 name: autopalatine-vomer joint def: "Joint that articulates autopalatine and vomer bones. Autopalatine-vomer joint is paired." [TAO:wd] xref: ZFA:0005422 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001785 name: branched dorsal fin ray xref: ZFA:0005534 is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001786 name: unbranched dorsal fin ray synonym: "dorsal fin unbranched ray" EXACT [] is_a: UBERON:4300116 ! dorsal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001787 name: pectoral fin spine def: "Pectoral-fin lepidotrichium 1 with mostly co-ossified and unsegmented hemitrichia that form a stiff and usually thick shaft and enlarged basal processes that moveably articulate with the pectoral girdle. The pectoral fin spine may also result from the fusion of several lepidotrichia that form a stiff shaft." [TAO:GA_TG, TAO:wd] synonym: "pectoral spine" EXACT [TAO:0001787] is_a: UBERON:4000175 ! pectoral fin lepidotrichium is_a: UBERON:4500009 ! paired fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001788 name: pelvic splint def: "Dermal bone that is located near the lateral margin of the pelvic fin, and lateral to pelvic-fin lepidotrichium 1." [TAO:wd] is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:0004376 ! fin bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010742 ! bone of pelvic complex relationship: part_of UBERON:0010711 ! pelvic fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001789 name: dorsal fin spine 1 def: "Dorsal-fin lepidotrichium 1 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with first (anteriormost) dorsal-fin pterygiophore." [TAO:wd] synonym: "dorsal spine 1" EXACT [TAO:0001789] is_a: UBERON:2002261 ! dorsal fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001790 name: dorsal fin spine 2 def: "Dorsal-fin lepidotrichium 2 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with second dorsal-fin pterygiophore." [TAO:wd] synonym: "dorsal spine 2" EXACT [TAO:0001790] is_a: UBERON:2002261 ! dorsal fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001792 name: pharyngobranchial 3 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 3." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001252 ! pharyngobranchial 3 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001793 name: pharyngobranchial 4 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 4." [TAO:wd] synonym: "infrapharyngobranchial 4 bone uncinate process" EXACT [TAO:0001793] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001636 ! pharyngobranchial 4 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001794 name: orbitosphenoid-prootic joint def: "Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired." [TAO:wd] xref: ZFA:0005480 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001795 name: ceratohyal foramen def: "Foramen in the anterior ceratohyal for passage of the hyoidean artery." [TAO:wd] synonym: "bericiform foramen" EXACT [TAO:0001795] synonym: "beryciform foramen" EXACT [TAO:0001795] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001796 name: epibranchial 2 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 2 bone." [TAO:wd] is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001246 ! epibranchial 2 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001797 name: epibranchial 1 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 1 bone." [TAO:wd] is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001243 ! epibranchial 1 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001798 name: epicentral bone def: "Intermuscular bone that articulates with the vertebral centrum." [TAO:wd] synonym: "diépipleural" EXACT [PSPUB:0000131] synonym: "neoneural" EXACT [PSPUB:0000165, PSPUB:0000166] is_a: UBERON:2000526 ! intermuscular bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001799 name: recessus lateralis def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals. See also Di Dario (2004)." [TAO:wd] xref: ZFA:0005493 is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001800 name: cephalic rib def: "Modified epicentral intermuscular bone that connects the back of the skull with the pectoral girdle." [TAO:wd] is_a: UBERON:2001798 ! epicentral bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001801 name: quadrate-hyomandibula joint def: "Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired." [TAO:wd] xref: ZFA:0005485 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001803 name: quadrate-metapterygoid joint def: "Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired." [TAO:wd] xref: ZFA:0005486 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001804 name: olfactory nerve foramen def: "Foramen for the passage of the olfactory nerve or cranial nerve 1." [TAO:wd] xref: ZFA:0005429 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001805 name: articular bone def: "Endochondral bone that is located posterior to the dentary, medial to the angular and antero-dorsal to the retroarticular forming the lower jaw. The articular bears a dorso-posterior articular facet for the condyle of the quadrate. The articular is a paired bone." [TAO:wd] comment: The articular fuses with the angular bone in clupeocephalans forming the anguloarticular. synonym: "articular" EXACT [TAO:0001805] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw relationship: develops_from UBERON:0003107 ! Meckel's cartilage property_value: external_definition "Endochondral ossification of the posterior articular part of Meckel's cartilage.[AAO]" xsd:string property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001806 name: intracranial diverticulum of swimbladder def: "An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear." [TAO:wd] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0006860 ! swim bladder property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001807 name: preepiotic fossa def: "Fossa that is a concavity on the dorsolateral surface of the skull roof found at least partially on the epiotic (epioccipital)." [TAO:wd] synonym: "preepioccipital fossa" EXACT [TAO:0001807] is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001808 name: facial foramen def: "Foramen through which cranial nerve VII (facial) exits." [TAO:wd] comment: This is the anterior opening of the trigeminofacialis (or trigeminal-facialis) chamber. synonym: "anterior opening trigeminofacialis chamber" EXACT [TAO:0001808] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001809 name: trigeminal foramen def: "Foramen through which cranial nerve V (trigeminal) exits." [TAO:wd] comment: This is the posterior opening of trigeminofacialis (or trigeminal-facialis) chamber. synonym: "posterior opening of trigeminofacialis chamber" EXACT [TAO:0001809] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001810 name: supraorbital sensory canal def: "Sensory canal anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with otic and infraorbital sensory canals. synonym: "supraorbital canal" EXACT [TAO:0001810] xref: ZFA:0005396 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001811 name: infraorbital sensory canal def: "Sensory canal lateral or ventral to and in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired and associated with the infraorbital bones." [TAO:wd] comment: May be continuous with otic and supraorbital sensory canals at their union. synonym: "infraorbital canal" EXACT [TAO:0001811] xref: ZFA:0005392 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001812 name: preoperculo-mandibular sensory canal def: "Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones." [TAO:wd] comment: May be continuous with the otic and post-otic sensory canals at their union. synonym: "preoperculo-mandibular canal" EXACT [TAO:0001812] xref: ZFA:0005395 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001813 name: preopercular sensory canal def: "Sensory canal lateral or ventral to and in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired and associated with the preopercle bone." [TAO:wd] comment: May be continuous with the otic and post-otic sensory canals at their union. xref: ZFA:0005448 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001814 name: mandibular sensory canal def: "Sensory canal anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and associated with the angular and dentary bones." [TAO:wd] comment: May be continuous with the preoperculo-mandibular sensory canal. synonym: "mandibular canal" RELATED [TAO:0001814] xref: ZFA:0005451 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001815 name: nuchal plate def: "Dermal bone that is a bony expansion in the integument anterior to or flanking the dorsal fin that is part of and at the distal end of a supraneural or dorsal fin proximal radial." [TAO:wd] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:2002063 ! nuchal plate series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001816 name: anterior nuchal plate def: "Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly." [TAO:wd] synonym: "first nuchal plate" EXACT [TAO:0001816] is_a: UBERON:2001815 ! nuchal plate relationship: part_of UBERON:2000442 ! supraneural bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001817 name: middle nuchal plate def: "Nuchal plate that is unpaired and part of dorsal fin proximal radial 1 and usually in contact with the anterior nuchal plate and paired posterior nuchal plates." [TAO:wd] synonym: "median nuchal plate" EXACT [TAO:0001817] synonym: "second nuchal plate" EXACT [TAO:0001817] is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001815 ! nuchal plate relationship: part_of UBERON:2001818 ! dorsal fin proximal radial bone 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001818 name: dorsal fin proximal radial bone 1 def: "Dorsal fin proximal radial 1 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005362 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2101818 ! dorsal fin proximal radial element 1 relationship: develops_from UBERON:2201818 ! dorsal fin proximal radial cartilage 1 [Term] id: UBERON:2001819 name: dorsal fin proximal radial bone 2 def: "Dorsal fin proximal radial 2 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005363 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2101819 ! dorsal fin proximal radial element 2 relationship: develops_from UBERON:2201819 ! dorsal fin proximal radial cartilage 2 [Term] id: UBERON:2001820 name: posterior nuchal plate def: "Paired nuchal plate that is part of dorsal fin proximal radial 2 and usually in contact with the middle nuchal plate." [TAO:wd] synonym: "third nuchal plate" EXACT [TAO:0001820] is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001815 ! nuchal plate relationship: part_of UBERON:2001819 ! dorsal fin proximal radial bone 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001821 name: notochord posterior region def: "Portion of tissue that is part of the caudal fin." [TAO:wd] xref: ZFA:0001670 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002328 ! notochord relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001822 name: epibranchial 3 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 3 bone." [TAO:wd] is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001247 ! epibranchial 3 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001823 name: epibranchial 4 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 4 bone." [TAO:wd] is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001245 ! epibranchial 4 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001824 name: lateral line scale def: "Scale that is associated with the lateral line sensory canal." [TAO:wd] xref: ZFA:0005530 is_a: UBERON:0007380 ! dermal scale relationship: part_of UBERON:2002099 ! lateral line scale series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001825 name: urohyal lateral process def: "Process that is part of the urohyal; it is the posterolaterally directed process located on the ventrolateral margin of urohyal. Urohyal lateral process is paired." [TAO:wd] comment: Synonyms: urohyal lateral lamella (Toledo-Piza 2007; Zanata and Vari 2005)\nurohyal ventral wing (Castro and Vari 2004). synonym: "branche ventrale de l'urohyal" EXACT [PSPUB:0000164] synonym: "processus hyo-pelvien" EXACT [PSPUB:0000139] synonym: "urohyal lateral lamella" EXACT [TAO:0001825] synonym: "urohyal ventral wing" EXACT [TAO:0001825] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000452 ! urohyal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001826 name: urohyal median process def: "Process that is part of the urohyal; it is the posterodorsally directed and median process located on the dorsal margin of the urohyal." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000452 ! urohyal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001827 name: premaxillary-maxillary ligament def: "Ligament that connects the premaxilla to the maxilla." [TAO:wd] xref: ZFA:0005265 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001828 name: primordial ligament def: "Ligament that connects the maxilla with the lower jaw." [TAO:wd] comment: Synonym articular-maxillary ligament (Alexander 1964). synonym: "articular-maxillary ligament" EXACT [TAO:0001828] synonym: "ligamentum primordiale" EXACT [TAO:0001828] synonym: "maxillo-mandibular ligament" EXACT [TAO:0001828] xref: ZFA:0005264 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001829 name: caudal fin dorsal procurrent ray alt_id: UBERON:2005262 def: "Caudal procurrent ray that forms part of the anterior dorsal series of lepidotrichia of the caudal fin and may be associated with a neural spine or a epural or a uroneural. A pair of hemitrichia forms each ray." [TAO:Arratia_2008, TAO:wd] synonym: "dorsal caudal procurrent ray" EXACT [TAO:0001829] synonym: "dorsal procurrent caudal-fin ray" EXACT [TAO:0001829] xref: ZFA:0005262 is_a: UBERON:2001584 ! caudal procurrent ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001830 name: caudal fin ventral procurrent ray alt_id: UBERON:2005263 def: "Caudal procurrent ray that forms part of the anterior ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or a epural or an uroneural (dorsal series) and with a hemal spine of a preural vertebra (ventral series). A caudal procurrent ray is an unpaired median bone." [TAO:Arratia_2008, TAO:wd] synonym: "precurrent ray" EXACT [TAO:0001830] synonym: "rudimentary ray" RELATED [TAO:0001830] synonym: "ventral caudal procurrent ray" EXACT [TAO:0001830] synonym: "ventral procurrent caudal-fin ray" EXACT [TAO:0001830] synonym: "ventral procurrent ray" EXACT [TAO:0001830] xref: ZFA:0005263 is_a: UBERON:2001584 ! caudal procurrent ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001831 name: pterosphenoid-orbitosphenoid joint def: "Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired." [TAO:wd] xref: ZFA:0005483 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001832 name: parasphenoid-basioccipital joint def: "Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is unpaired." [TAO:wd] xref: ZFA:0005560 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001833 name: premaxillary tooth row def: "Tooth row that is on the premaxilla." [TAO:wd] is_a: UBERON:0009678 ! tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001840 name: tip def: "Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage." [TAO:wd] synonym: "tips" EXACT OMO:0003004 [TAO:0001840] is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0004529 ! anatomical projection property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001841 name: interhyal-epihyal joint def: "Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired." [TAO:wd] comment: Logical definition to be added after generic element classes added to group/bone cartilage xref: ZFA:0005473 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001842 name: epihyal-ceratohyal joint def: "Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired." [TAO:wd] xref: ZFA:0005497 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001843 name: ceratohyal-dorsal hypohyal joint def: "Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired." [TAO:wd] xref: ZFA:0005467 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001844 name: ceratohyal-ventral hypohyal joint def: "Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired." [TAO:wd] xref: ZFA:0005466 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001845 name: dorsal hypohyal-ventral hypohyal joint def: "Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired." [TAO:wd] xref: ZFA:0005458 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001846 name: inter-ventral hypohyal joint def: "Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired." [TAO:wd] xref: ZFA:0005476 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001847 name: dorsal hypohyal-urohyal joint def: "Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired." [TAO:wd] xref: ZFA:0005457 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001848 name: ventral hypohyal-urohyal joint def: "Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired." [TAO:wd] xref: ZFA:0005487 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001849 name: epihyal-branchiostegal ray joint def: "Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired." [TAO:wd] xref: ZFA:0005498 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001850 name: ceratohyal-branchiostegal ray joint def: "Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired." [TAO:wd] xref: ZFA:0005465 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001852 name: postcleithrum 1 def: "Postcleithrum that anteriorly articulates with the supracleithrum and/or the cleithrum of the pectoral girdle; most dorsal element in a series of postcleithra." [TAO:GA_TG, TAO:wd] is_a: UBERON:2000410 ! postcleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001853 name: postcleithrum 2 def: "Postcleithrum that articulates dorsally with postcleithrum 1, ventrally with postcleithrum 3, and anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] is_a: UBERON:2000410 ! postcleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001854 name: postcleithrum 3 def: "Postcleithrum that articulates dorsally with postcleithrum 2 and, sometimes, anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] is_a: UBERON:2000410 ! postcleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001855 name: hyomandibular condyle for the opercle def: "Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle." [TAO:wd] synonym: "opercular process of hyomandibular" EXACT [TAO:0001855] is_a: UBERON:0009979 ! condyle relationship: part_of UBERON:0011607 ! hyomandibular cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001856 name: gill ray def: "Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage." [TAO:wd] xref: ZFA:0005390 is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001857 name: hyoidean artery def: "An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch." [TAO:wd] is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0004467 ! musculature of pharynx relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001858 name: suprapharyngobranchial def: "A pharyngobranchial bone that articulates with the neurocranium dorsally and epibranchial 1 and pharyngobranchial 2 ventrally; lies dorsal to other elements of the dorsal portions of the branchial arches." [TAO:wd] comment: Articulates with the exoccipital or prootic depending on taxon. synonym: "branchial spiracle" EXACT [TAO:0001858] is_a: UBERON:2000527 ! pharyngobranchial bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001859 name: pharyngobranchial 1 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 1 bone." [TAO:wd] synonym: "pharyngobranchial 1 toothplate" EXACT [TAO:0001859] is_a: UBERON:2002015 ! pharyngobranchial tooth plate relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001860 name: epibranchial 4-upper pharyngeal toothplate joint def: "Joint that articulates the epibranchial 4 cartilage or bone and upper pharyngeal toothplate. Epibranchial 4-upper pharyngeal toothplate joint is paired." [TAO:wd] is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001861 name: epibranchial 3-pharyngobranchial 3 joint def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 3 cartilage or bone. Epibranchial 3-pharyngobranchial 3 joint is paired." [TAO:wd] is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001862 name: epibranchial 3-pharyngobranchial 4 joint def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 4 cartilage or bone. Epibranchial 3-pharyngobranchial 4 joint is paired." [TAO:wd] is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001863 name: inter-hypobranchial 3 joint def: "Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired." [TAO:wd] xref: ZFA:0005474 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001864 name: basibranchial 1 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3)." [TAO:wd] is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001915 ! basibranchial 1 element relationship: develops_from UBERON:2001221 ! anterior copula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001865 name: basibranchial 4 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6)." [TAO:wd] is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001918 ! basibranchial 4 element relationship: develops_from UBERON:2001222 ! posterior copula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001866 name: basibranchial 5 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7)." [TAO:wd] is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001919 ! basibranchial 5 element relationship: develops_from UBERON:2001222 ! posterior copula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001867 name: post-ceratobranchial cartilage def: "Pharyngeal arch cartilage that is ventral, median, and at or posterior to the juncture of the bilaterally paired ceratobranchial 5 cartilage or bone." [TAO:wd] synonym: "basibranchial 6" EXACT [TAO:0001867] synonym: "copula 4" EXACT [TAO:0001867] synonym: "pericardial cartilage" EXACT [TAO:0001867] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001869 name: supraneural 2 cartilage def: "Postcranial axial cartilage located dorsal to vertebra 2." [TAO:wd] is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300214 ! supraneural 2 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001870 name: supraneural 3 cartilage def: "Postcranial axial cartilage located dorsal to vertebrae 3 and 4." [TAO:wd] is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300215 ! supraneural 3 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001871 name: Weberian ossicle set def: "Anatomical cluster that consists of the Weberian ossicles." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:2001188 ! Weberian apparatus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001872 name: trunk sensory canal system def: "Lateral line system on trunk." [TAO:wd] is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001873 name: head sensory canal system def: "Lateral line system on head and pectoral girdle." [TAO:wd] synonym: "cephalic sensory canal system" EXACT [TAO:0001873] xref: ZFA:0005391 is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001874 name: basibranchial 2 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4)." [TAO:wd] is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001916 ! basibranchial 2 element relationship: develops_from UBERON:2001221 ! anterior copula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001875 name: opercular series is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001876 name: basibranchial 3 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5)." [TAO:wd] is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001917 ! basibranchial 3 element relationship: develops_from UBERON:2001221 ! anterior copula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001877 name: neural arch 1 def: "Neural arch that is the anteriormost neural arch." [TAO:wd] is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001878 name: rib of vertebra 2 def: "Rib that articulates with the parapophysis of the second centrum." [TAO:wd] xref: ZFA:0005539 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001879 name: rib of vertebra 1 def: "Rib that articulates with the parapophysis of the first centrum." [TAO:wd] xref: ZFA:0005538 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001880 name: rib of vertebra 3 def: "Rib that articulates with the parapophysis of the third centrum." [TAO:wd] xref: ZFA:0005540 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001881 name: rib of vertebra 4 def: "Rib that articulates with the parapophysis of the fourth centrum." [TAO:wd] xref: ZFA:0005541 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001882 name: parapophysis + rib of vertebra 3 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:2001169 ! vertebral element 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001883 name: parapophysis + rib of vertebra 3 + rib of vertebra 4 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:2001169 ! vertebral element 3 relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001884 name: accessory neural arch def: "Neural arch that is located posterior to the neurocranium and anterior to neural arch 1. The accessory neural arch is not associated with a vertebral centrum." [TAO:wd] comment: Definition from de Pinna and Grande (2003). is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001885 name: neural spine 1 def: "Neural spine that is associated with the first vertebra." [TAO:wd] is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001886 name: neural spine 2 def: "Neural spine that is associated with the second vertebra." [TAO:wd] is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001887 name: neural spine 3 def: "Neural spine that is associated with the third vertebra." [TAO:wd] is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001888 name: supraneural 1 bone def: "Supraneural bone located dorsal to vertebra 1." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300213 ! supraneural 1 element relationship: develops_from UBERON:2001889 ! supraneural 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001889 name: supraneural 1 cartilage def: "Postcranial axial cartilage located dorsal to vertebra 1." [TAO:wd] is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300213 ! supraneural 1 element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001892 name: interhyal element def: "Skeletal element that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] synonym: "stylohyal" RELATED [] synonym: "stylohyal element" EXACT [] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001893 name: hypobranchial element def: "Skeletal element that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial element." [TAO:wd] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001894 name: hypobranchial 1 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally." [TAO:wd] is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001895 name: hypobranchial 2 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally." [TAO:wd] is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001896 name: hypobranchial 3 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally." [TAO:wd] is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001897 name: hypobranchial 4 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally." [TAO:wd] is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001898 name: ceratobranchial element def: "Skeletal element that is bilaterally paired and forms part of the ventral branchial arches." [TAO:wd] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002103 ! ceratobranchial series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001899 name: ceratobranchial 1 element is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001900 name: ceratobranchial 2 element is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001901 name: ceratobranchial 3 element is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001902 name: ceratobranchial 4 element is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001903 name: ceratobranchial 5 element is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001904 name: epibranchial element def: "Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element." [TAO:wd] synonym: "epibranchial elements" EXACT OMO:0003004 [TAO:0001904] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002102 ! epibranchial series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001905 name: epibranchial 1 element is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001906 name: epibranchial 2 element is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001907 name: epibranchial 3 element is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001908 name: epibranchial 4 element is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001909 name: pharyngobranchial element def: "Skeletal element of the branchial arches located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial element" EXACT [] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001910 name: pharyngobranchial 1 element def: "Most anterior pharyngobranchial element, located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial 1 element" EXACT [] is_a: UBERON:2001909 ! pharyngobranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001911 name: pharyngobranchial 2 element def: "Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [TAO:wd] synonym: "infrapharyngobranchial 2 element" EXACT [] is_a: UBERON:2001909 ! pharyngobranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001912 name: pharyngobranchial 3 element def: "Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [TAO:wd] synonym: "infrapharyngobranchial 3 element" EXACT [] is_a: UBERON:2001909 ! pharyngobranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001913 name: pharyngobranchial 4 element def: "Most posterior pharyngobranchial element, located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial 4 element" EXACT [] synonym: "infrapharyngobranchial 4 element" RELATED [TAO:0001913] is_a: UBERON:2001909 ! pharyngobranchial element relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001914 name: obsolete basibranchial element def: "Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [TAO:wd] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0004740 [Term] id: UBERON:2001915 name: basibranchial 1 element def: "Skeletal element that is median and associated with branchial arch 1." [TAO:wd] is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001916 name: basibranchial 2 element def: "Skeletal element that is median and associated with branchial arch 2." [TAO:wd] is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001917 name: basibranchial 3 element def: "Skeletal element that is median and associated with branchial arch 3." [TAO:wd] is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001918 name: basibranchial 4 element def: "Skeletal element that is median and associated with branchial arch 4." [TAO:wd] is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001919 name: basibranchial 5 element def: "Skeletal element that is median and associated with branchial arch 5." [TAO:wd] is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001920 name: pseudotympanum def: "Anatomical structure that is formed as a hiatus in the muscles covering the anterior chamber of the swim bladder in the area of ribs 5 and 6." [TAO:wd] synonym: "humeral hiatus" EXACT [TAO:0001920] is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001921 name: adipose eyelid def: "Surface structure that is a fleshy membrane covering part of the eye." [TAO:wd] is_a: UBERON:0003102 ! surface structure relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0000033 ! head property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001922 name: inter-frontal joint def: "Joint between the left and right frontal bone." [TAO:wd] synonym: "interfrontal suture" EXACT [ZFIN:ZDB-PUB-060323-12] synonym: "metopic suture" RELATED [ZFIN:ZDB-PUB-060323-12] xref: ZFA:0005472 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001923 name: aortic canal def: "Canal that houses the dorsal aorta." [TAO:wd] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001924 name: occipital artery foramen def: "Foramina that allow passage of occipital arteries." [TAO:wd] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001925 name: spiracular canal def: "Foramen for passage of nerve supplying otic lateral line." [TAO:wd] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001926 name: posterior myodome def: "Fossa or chamber on posterior portion of orbital region of neurocranium that serves as attachment site for posterior extrinsic eye muscles." [TAO:wd] is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001927 name: anterior myodome def: "Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature." [TAO:wd] xref: ZFA:0005406 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001928 name: articular fossa of opercle def: "Fossa of opercle that articulates with hyomandibular condyle for opercle." [TAO:wd] xref: ZFA:0005442 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001929 name: epioccipital posterior process def: "Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus." [TAO:wd] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:2001412 ! epiotic property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001930 name: accessory vomerine tooth plate def: "Dermal bone that is located lateral to vomer off midline of palate. Accessory vomerine tooth plate bears teeth and may be present as one or more pairs." [TAO:wd] comment: Accessory vomerine tooth plate is not synonymous with dermopalatine tooth plate, palatine tooth plate, or pterygoid tooth plate. is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003112 ! olfactory region relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001931 name: infranuchal scute def: "Scute that is an elongated plate associated with a ligament running between posterior nuchal plate and rib on vertebra 6. Infranuchal scute is paired and develops from its associated ligament and sensory canal tubular ossicle." [TAO:wd] is_a: UBERON:2002294 ! fish scute property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001932 name: sensory canal tubular ossicle def: "Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal." [TAO:wd] xref: ZFA:0005511 is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001933 name: sensory canal tubule def: "Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so." [TAO:wd] xref: ZFA:0005447 is_a: UBERON:2001612 ! sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001934 name: rostral plate def: "Dermal bone that is located on midline of snout in skin above mesethmoid and lateral ethmoid bones. Rostral plate bears type 1 odontodes and is unpaired." [TAO:wd] is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003112 ! olfactory region relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001935 name: oral disk def: "Lip that is expanded to form a broad, rounded cup around the mouth." [TAO:wd] is_a: UBERON:0001833 ! lip property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001936 name: posterior nasal barbel def: "Barbel that is attached to the anterior rim of the posterior nostril. Posterior nasal barbel is paired." [TAO:wd] is_a: UBERON:4300287 ! nasal barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001937 name: anterior nasal barbel def: "Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired." [TAO:wd] xref: ZFA:0005407 is_a: UBERON:4300287 ! nasal barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001938 name: maxillary barbel def: "Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired." [TAO:wd] xref: ZFA:0005408 is_a: UBERON:2000622 ! barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001939 name: inter-basipterygium joint def: "Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired." [TAO:wd] synonym: "pelvic girdle symphysis" EXACT [TAO:0001939] synonym: "pelvic symphysis" EXACT [TAO:0001939] xref: ZFA:0005471 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001940 name: vertebra 4-vertebra 5 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5." [TAO:wd] xref: ZFA:0005504 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001941 name: orbitosphenoid-lateral ethmoid joint def: "Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired." [TAO:wd] xref: ZFA:0005479 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001942 name: autopalatine-maxillary joint def: "Joint that articulates the autopalatine cartilage or bone and maxilla." [TAO:wd] xref: ZFA:0005421 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001943 name: metapterygoid-autopalatine ligament def: "Ligament that connects the metapterygoid to the autopalatine." [TAO:wd] is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001944 name: lateral ethmoid-autopalatine ligament def: "Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine." [TAO:wd] xref: ZFA:0005502 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001945 name: mesethmoid-premaxillary ligament def: "Mesethmoid-premaxillary ligament is a ligament that connects the mesethmoid to the premaxilla." [TAO:wd] is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001946 name: mesethmoid-maxillary ligament def: "Mesethmoid-maxillary ligament is a ligament that connects the mesethmoid to the maxilla." [TAO:wd] is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001947 name: hyomandibular-otic region joint def: "Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired." [TAO:wd] xref: ZFA:0005544 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001948 name: anal fin hook def: "Process that is part of the anal fin lepidotrichium." [TAO:wd] synonym: "anal-fin hook" EXACT [TAO:0001948] is_a: UBERON:4300284 ! fin hook relationship: part_of UBERON:4000176 ! anal fin lepidotrichium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001949 name: caudal fin hook def: "Process that is part of the caudal fin lepidotrichium." [TAO:wd] comment: Caudal fin hook is found in some characiform fishes. synonym: "caudal-fin hook" EXACT [TAO:0001949] is_a: UBERON:4300284 ! fin hook relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001950 name: inter-premaxillary joint def: "Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired." [TAO:wd] xref: ZFA:0005475 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001951 name: skin flap def: "Surface structure that is a portion of skin that projects or hangs from the body." [TAO:wd] xref: ZFA:0005495 is_a: UBERON:3000961 ! external integument structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001952 name: dentary tooth row def: "Tooth row that is on the dentary." [TAO:wd] is_a: UBERON:0009678 ! tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001953 name: obsolete cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0002376 [Term] id: UBERON:2001955 name: obsolete pigmentation synonym: "body pigmentation" RELATED [TAO:0001955] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2001956 name: epibranchial 1 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 1 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 1 bone proximal cartilage is paired." [TAO:wd] synonym: "epibranchial 1 anterior cartilage" EXACT [TAO:0001956] synonym: "epibranchial 1 mesial cartilage" EXACT [TAO:0001956] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001243 ! epibranchial 1 bone relationship: part_of UBERON:2001528 ! epibranchial 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001957 name: epibranchial 2 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 2 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 2 bone proximal cartilage is paired." [TAO:w] synonym: "epibranchial 2 anterior cartilage" EXACT [TAO:0001957] synonym: "epibranchial 2 mesial cartilage" EXACT [TAO:0001957] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001246 ! epibranchial 2 bone relationship: part_of UBERON:2001530 ! epibranchial 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001958 name: ceratobranchial 3 bone distal cartilage def: "Pharynbeal cartilage that is part of and at the distal end of ceratobranchial 3 bone, and that usually articulates with epibranchial 3 element. Ceratobranchial 3 bone distal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 3 bone lateral cartilage" EXACT [TAO:0001958] synonym: "ceratobranchial 3 bone posterior cartilage" EXACT [TAO:0001958] is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:4000003 ! permanent cartilage relationship: part_of UBERON:2001241 ! ceratobranchial 3 bone relationship: part_of UBERON:2001518 ! ceratobranchial 3 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001959 name: ceratobranchial 4 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of ceratobranchial 4 bone, and that usually articulates with basibranchial 4 element. Ceratobranchial 4 proximal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 4 bone anterior cartilage" EXACT [TAO:0001959] synonym: "ceratobranchial 4 bone mesial cartilage" EXACT [TAO:0001959] is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:4000003 ! permanent cartilage relationship: part_of UBERON:2001240 ! ceratobranchial 4 bone relationship: part_of UBERON:2001519 ! ceratobranchial 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001960 name: ceratobranchial 4 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 4 bone, and that usually articulates with epibranchial 4 element. Ceratobranchial 4 distal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 4 bone lateral cartilage" EXACT [TAO:0001960] synonym: "ceratobranchial 4 bone posterior cartilage" EXACT [TAO:0001960] is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:4000003 ! permanent cartilage relationship: part_of UBERON:2001240 ! ceratobranchial 4 bone relationship: part_of UBERON:2001519 ! ceratobranchial 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001961 name: ceratobranchial 5 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 5 bone. Ceratobranchial 5 bone distal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 5 bone lateral cartilage" EXACT [TAO:0001961] synonym: "ceratobranchial 5 bone posterior cartilage" EXACT [TAO:0001961] is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:4000003 ! permanent cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001962 name: hypobranchial 1 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 1 bone, and that usually articulates with ceratobranchial 1 element. Hypobranchial 1 bone distal cartilage is paired." [TAO:wd] synonym: "hypobranchial 1 bone lateral cartilage" EXACT [TAO:0001962] synonym: "hypobranchial 1 bone posterior cartilage" EXACT [TAO:0001962] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001233 ! hypobranchial 1 bone relationship: part_of UBERON:2001524 ! hypobranchial 1 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001963 name: hypobranchial 2 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 2 bone, and that usually articulates with ceratobranchial 2 element. Hypobranchial 2 bone distal cartilage is paired." [TAO:wd] synonym: "hypobranchial 2 bone lateral cartilage" EXACT [TAO:0001963] synonym: "hypobranchial 2 bone posterior cartilage" EXACT [TAO:0001963] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001236 ! hypobranchial 2 bone relationship: part_of UBERON:2001525 ! hypobranchial 2 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001964 name: epibranchial 3 bone uncinate process cartilage def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 3 uncinate process. epibranchial bone 3 uncinate process cartilage is paired." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001822 ! epibranchial 3 bone uncinate process property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001965 name: epibranchial 4 bone uncinate process cartilage def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 4 uncinate process. Epibranchial bone 4 uncinate process cartilage is paired." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001823 ! epibranchial 4 bone uncinate process property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001966 name: epibranchial 5 element is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001967 name: obsolete orbit comment: Obsoleted as we redundant with other classes. See https://github.com/obophenotype/uberon/issues/462 is_obsolete: true consider: ZFA:0005558 [Term] id: UBERON:2001968 name: outer mental barbel def: "Mental barbel that originates on the chin, in a posterolateral position relative to the inner mental barbel." [TAO:wd] is_a: UBERON:2002024 ! mental barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001969 name: inner mental barbel def: "Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel." [TAO:wd] xref: ZFA:0005508 is_a: UBERON:2002024 ! mental barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001971 name: parapophysis 4 def: "Parapophysis that is the lateral projection from the fourth centrum. Parapophysis 4 is bilaterally paired." [TAO:wd] is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001972 name: intercostal ligament def: "Ligament that connects one rib to another." [TAO:wd] xref: ZFA:0005637 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001974 name: subtemporal fossa xref: ZFA:0005454 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001975 name: suprabranchial artery is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001976 name: interorbital septum def: "Anatomical cluster composed of one or more bones and tissue that separates the orbits." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000033 ! head property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001977 name: pad def: "Surface structure that is a portion of the integument thickened relative to surrounding area." [TAO:wd] synonym: "pads" EXACT OMO:0003004 [TAO:0001977] xref: MESH:D058729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:3000961 ! external integument structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001978 name: maxillary tooth row def: "Tooth row that is on the maxilla." [TAO:wd] is_a: UBERON:0009678 ! tooth row property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001979 name: hyomandibula-metapterygoid joint def: "Joint that articulates the hyomandibula bone and metapterygoid bone." [TAO:wd] xref: ZFA:0005469 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001980 name: vertebral element 6 def: "Vertebra that is posteriorly adjacent to vertebra 5." [TAO:wd] xref: ZFA:0005348 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "6" xsd:nonNegativeInteger [Term] id: UBERON:2001981 name: vertebral element 7 def: "Vertebra that is posteriorly adjacent to vertebra 6." [TAO:wd] xref: ZFA:0005349 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "7" xsd:nonNegativeInteger [Term] id: UBERON:2001982 name: vertebral element 8 def: "Vertebra that is posteriorly adjacent to vertebra 7." [TAO:wd] xref: ZFA:0005350 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "8" xsd:nonNegativeInteger [Term] id: UBERON:2001983 name: centrum 1 def: "Centrum that is part of vertebra 1." [TAO:wd] is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:0001092 ! vertebral bone 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001984 name: centrum 2 def: "Centrum that is part of vertebra 2." [TAO:wd] is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:0001093 ! vertebral bone 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001985 name: centrum 3 def: "Centrum that is part of vertebra 3." [TAO:wd] is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001169 ! vertebral element 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001986 name: centrum 4 def: "Centrum that is part of vertebra 4." [TAO:wd] is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001987 name: centrum 5 def: "Centrum that is part of vertebra 5." [TAO:wd] is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001732 ! vertebral element 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001988 name: centrum 6 def: "Centrum that is part of vertebra 6." [TAO:wd] is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001980 ! vertebral element 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001989 name: mandibular-hyoid median cartilage def: "Pharyngeal arch cartilage that is a spherical mass of cartilage located between the mandibular symphysis and ventral hyoid arch. Mandibular-hyoid median cartilage is unpaired." [TAO:wd] comment: Schaefer, S. 1990. (Anatomy and relationships of the scoloplacid catfishes. Proc. Acad. Nat. Sci. Phil. 142: 167-210) described this structure in certain catfishes and applied the name hyomandibular cartilage. To avoid possible confusion of this structure with the hyomandibular cartilage (or bone) of the suspensorium, the term mandibular-hyoid median cartilage is used here. synonym: "hyomandibular cartilage sensu Schaefer (1990)" EXACT [TAO:0001989] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005884 ! hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001990 name: epibranchial arborescent organ def: "Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired." [TAO:wd] comment: Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. synonym: "suprabranchial organ" EXACT [TAO:0001990] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001991 name: lateral bone def: "Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired." [TAO:wd] is_a: UBERON:0007842 ! membrane bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001992 name: branched anal fin ray def: "Anal fin lepidotrichium that is distally branched." [TAO:wd] synonym: "anal fin branched ray" EXACT [TAO:0001992] xref: ZFA:0005535 is_a: UBERON:4500006 ! anal fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001993 name: branched pectoral fin ray def: "Pectoral fin lepidotrichium that is distally branched and segmented." [TAO:wd] synonym: "pectoral fin branched ray" EXACT [TAO:0001993] is_a: UBERON:4500007 ! pectoral fin ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001994 name: gill raker row def: "Anatomical cluster that consists of adjacent gill rakers constituting a row and is part of a ceratobranchial or epibranchial element of the branchial arches. Gill raker row is paired." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001995 name: papilla def: "Surface structure that is a small, fleshy protuberance." [TAO:wd] synonym: "dermal papilla" RELATED [TAO:0001995] synonym: "papillae" EXACT OMO:0003004 [TAO:0001995] is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001996 name: maxillary canal is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001997 name: parietal-supraoccipital def: "Compound dermal and endochondral bone that results from the fusion of the paired dermal parietal bones and the median endochondral supraoccipital. Forms the dorso-posterior element of the dermatocranium." [TAO:GA_TG] comment: A parietal-supraoccipital or parieto-supraoccipital bone is an element present in Siluriformes. synonym: "parieto-supraoccipital" EXACT [TAO:0001997] synonym: "supraoccipital" BROAD [TAO:0001997] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone relationship: develops_from UBERON:0004747 ! supraoccipital bone relationship: develops_from UBERON:0004865 ! actinopterygian parietal bone relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001998 name: posttemporal-supracleithrum def: "Dermal bone that results from the fusion of the dermal posttemporal and the dermal supracleithrum. Forms the upper skeletal element of the pectoral girdle between the cleithrum and neurocranium. Posttemporal-supracleithrum is paired." [TAO:wd] comment: A posttemporo-supracleithrum is a bone present in Siluriformes. There are different opinions if this is the result of an ontogenetic or a phylogenetic fusion or the loss or one or other bone. synonym: "postemporo-supracleithrum" EXACT [TAO:0001998] synonym: "posttemporal" RELATED [TAO:0001998] synonym: "posttemporo-supracleithrum" EXACT [TAO:0001998] synonym: "supracleithrum" RELATED [TAO:0001998] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: develops_from UBERON:2000549 ! posttemporal relationship: develops_from UBERON:2000594 ! supracleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001999 name: posterior cleithral process def: "Process arising from the posterior or postero-dorsal margin of the cleithrum dorsally adjacent to the insertion of the pectoral fin. Posterior cleithral process is paired." [TAO:wd] synonym: "humeral process" EXACT [TAO:0001999] synonym: "postcleithral process" EXACT [TAO:0001999] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002000 name: posterior dentation of pectoral fin spine def: "Process that is tooth-like or thorn-like and arising from the posteriorly-facing margin of the abducted pectoral spine." [TAO:wd] synonym: "pectoral fin spine posterior dentation" EXACT [TAO:0002000] synonym: "posterior denticle of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior serration of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior thorn of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior tooth of pectoral fin spine" EXACT [TAO:0002000] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002001 name: anterior dentation of pectoral fin spine def: "Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior dentation of pectoral fin spine is usually present on the proximal and/or middle section of the pectoral fin spine." [TAO:wd] synonym: "anterior denticle of pectoral fin spine" RELATED [TAO:0002001] synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002001] synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002001] synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002001] synonym: "pectoral fin spine anterior dentation" RELATED [TAO:0002001] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002002 name: anterior distal serration of pectoral fin spine def: "Process that is retrorse, thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior distal serration of pectoral fin spine is usually present on the distal section of the pectoral fin spine." [TAO:wd] synonym: "anterior denticle of pectoral fin spine" RELATED [TAO:0002002] synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002002] synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002002] synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002002] synonym: "pectoral fin spine anterior distal serration" RELATED [TAO:0002002] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002003 name: posterior dentation of dorsal fin spine 2 def: "Process that is tooth or thorn-like and arising from the posteriorly-facing margin of the abducted dorsal-fin spine 2." [TAO:wd] synonym: "dorsal fin spine 2 posterior dentation" EXACT [TAO:0002003] synonym: "posterior denticle of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior serration of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior thorn of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior tooth of dorsal fin spine 2" EXACT [TAO:0002003] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001790 ! dorsal fin spine 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002004 name: anterior dentation of dorsal fin spine 2 def: "Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted dorsal-fin spine 2." [TAO:wd] synonym: "anterior denticle of dorsal fin spine 2" EXACT [TAO:0002004] synonym: "anterior serration of dorsal fin spine 2" EXACT [TAO:0002004] synonym: "anterior thorn of dorsal fin spine 2" EXACT [TAO:0002004] synonym: "anterior tooth of dorsal fin spine 2" EXACT [TAO:0002004] synonym: "dorsal fin spine 2 anterior dentation" EXACT [TAO:0002004] is_a: UBERON:0004529 ! anatomical projection relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002005 name: canal plate def: "Dermal bone that is ventral to the preopercle and bears a portion of the preopercular sensory canal." [TAO:wd] comment: The number of canal plates present can be variable. is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0005884 ! hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002006 name: axillary pore def: "Pore that is located ventral to the posterior cleithral process and medial to the pectoral fin. Axillary pore is at the end of a duct from an integumentary gland." [TAO:wd] is_a: UBERON:0008915 ! pore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002007 name: supraneural 4 bone def: "Supraneural dorsal to neural spine 4." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300216 ! supraneural 4 element relationship: develops_from UBERON:4300263 ! supraneural 4 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002008 name: neural lamina def: "Neural lamina is a median, vertical ridge or bony septum between neural spine 3 and neural spine 4 on the dorsal side of the Weberian vertebra. Neural lamina is unpaired." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001190 ! Weberian vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002009 name: medial cartilage of palatine def: "Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint." [TAO:wd] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002010 name: hyoideomandibular nerve def: "Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2." [TAO:wd] xref: ZFA:0005397 is_a: UBERON:0001021 ! nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002011 name: lateral fontanel of frontal def: "Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired." [TAO:wd] comment: Original reference: de Pinna MCC, Vari RP. 1995. Monophyly and phylogenetic diagnosis of the family Cetopsidae, with synonymization of the Helogenidae (Teleostei: Siluriformes). Smithsonian Contributions to Zoology 571: 1-26. xref: ZFA:0005537 is_a: UBERON:0002221 ! fontanelle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002012 name: dentary foramen def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:wd] xref: ZFA:0005427 is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0004742 ! dentary property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002013 name: ascending limb of ceratobranchial 5 bone def: "Process that is the dorsally directed portion of ceratobranchial 5 bone." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. is_a: UBERON:0004530 ! bony projection relationship: develops_from UBERON:2002014 ! ascending limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002014 name: ascending limb of ceratobranchial 5 cartilage def: "Process that is the dorsally directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002015 name: pharyngobranchial tooth plate def: "Dermal bone of upper pharyngeal arches associated with pharyngobranchial bones or cartilages, usually bearing teeth." [TAO:wd] synonym: "pharyngobranchial toothplate" EXACT [TAO:0002015] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002016 name: pharyngobranchial 4 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4." [TAO:wd] synonym: "pharyngobranchial 4 toothplate" EXACT [TAO:0002016] is_a: UBERON:2002015 ! pharyngobranchial tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002017 name: anterior limb of ceratobranchial 5 bone def: "Process that is the anterior and medially directed portion of ceratobranchial 5 bone part of ceratobranchial 5 bone." [TAO:wd] comment: This term applies to cypriniform fishes. is_a: UBERON:0004530 ! bony projection relationship: develops_from UBERON:2002018 ! anterior limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002018 name: anterior limb of ceratobranchial 5 cartilage def: "Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: This term applies to cypriniform fishes. is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002019 name: pterotic-posttemporal-supracleithrum def: "Bone that is a fusion of the pterotic, posttemporal, and supracleithrum bones." [TAO:wd] synonym: "pterotic-supracleithrum" EXACT [TAO:0002019] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002020 name: hypomaxilla def: "Dermal bone bearing teeth located between the distal end of the premaxilla and the middle of the maxilla. The hypomaxilla is a paired bone." [TAO:ga_tg] comment: Hypomaxilla is a bone restricted to some clupeiforms. See Berry (1964) for a detailed account of the distribution of the hypomaxilla within clupeiforms and specifically in Herengula. is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011085 ! palatoquadrate arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002021 name: ascending process of the parasphenoid def: "Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic." [TAO:wd] synonym: "ascending ramus of the parasphenoid" EXACT [TAO:0002021] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0004745 ! parasphenoid property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002022 name: dermethmoid def: "Dermal bone of the dorsal surface of the olfactory region. Dermethmoid can be paired or median." [TAO:wd] is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003112 ! olfactory region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002023 name: second preethmoid bone def: "Endochondral bone found between the preethmoid and maxilla." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:4300286 ! second preethmoid element relationship: develops_from UBERON:4300285 ! second preethmoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002024 name: mental barbel def: "Barbel that originates on the chin." [TAO:wd] xref: ZFA:0005433 is_a: UBERON:2000622 ! barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002026 name: pectoral fin proximal radial bone 1 def: "Pectoral fin proximal radial 1 element that is composed of bone tissue." [OBOL:automatic] synonym: "first pectoral basal radial" EXACT [TAO:0002026] is_a: UBERON:2001587 ! pectoral fin proximal radial bone is_a: UBERON:2102026 ! pectoral fin proximal radial element 1 relationship: develops_from UBERON:2202026 ! pectoral fin proximal radial cartilage 1 [Term] id: UBERON:2002027 name: pectoral fin proximal radial bone 2 def: "Pectoral fin proximal radial 2 element that is composed of bone tissue." [OBOL:automatic] synonym: "second pectoral basal radial" EXACT [TAO:0002027] is_a: UBERON:2001587 ! pectoral fin proximal radial bone is_a: UBERON:2102027 ! pectoral fin proximal radial element 2 relationship: develops_from UBERON:2202027 ! pectoral fin proximal radial cartilage 2 [Term] id: UBERON:2002028 name: pectoral fin proximal radial bone 3 def: "Pectoral fin proximal radial 3 element that is composed of bone tissue." [OBOL:automatic] synonym: "third pectoral basal radial" EXACT [TAO:0002028] is_a: UBERON:2001587 ! pectoral fin proximal radial bone is_a: UBERON:2102028 ! pectoral fin proximal radial element 3 relationship: develops_from UBERON:2202028 ! pectoral fin proximal radial cartilage 3 [Term] id: UBERON:2002029 name: pectoral fin proximal radial bone 4 def: "Pectoral fin proximal radial 4 element that is composed of bone tissue." [OBOL:automatic] synonym: "fourth pectoral basal radial" EXACT [TAO:0002029] is_a: UBERON:2001587 ! pectoral fin proximal radial bone is_a: UBERON:2102029 ! pectoral fin proximal radial element 4 relationship: develops_from UBERON:2202029 ! pectoral fin proximal radial cartilage 4 [Term] id: UBERON:2002030 name: ventral keel of coracoid def: "Process on the ventral surface of the horizontal limb of the coracoid, close to and parallel to the coracoid-cleithrum joint. Ventral keel of coracoid is paired." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004743 ! coracoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002031 name: orbital foramen def: "Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal)." [TAO:wd] xref: ZFA:0005430 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002032 name: lateral ethmoid-frontal joint def: "Joint that articulates the lateral ethmoid and frontal. lateral ethmoid-frontal joint is paired." [TAO:wd] xref: ZFA:0005477 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002033 name: prootic-pterosphenoid joint def: "Joint that articulates the prootic and pterosphenoid. prootic-pterosphenoid joint is paired." [TAO:wd] xref: ZFA:0005482 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002034 name: prootic-exoccipital joint def: "Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired." [TAO:wd] xref: ZFA:0005481 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002038 name: basioccipital-exoccipital joint def: "Joint that articulates the basioccipital and exoccipital. Basioccipital-exoccipital joint is paired." [TAO:wd] xref: ZFA:0005423 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002039 name: dilatator fossa def: "Fossa located on the neurocranium that is formed from portions of the sphenotic, frontal and pterotic bones." [TAO:wd] comment: Dilatator fossa is present in some characiform fishes. is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002040 name: inter-coracoid joint def: "Joint between the right and left coracoid bones of the pectoral girdle." [TAO:wd] xref: ZFA:0005470 is_a: UBERON:0008114 ! joint of girdle relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002041 name: parapophysis 6 def: "Parapophysis that is the lateral projection from the sixth centrum." [TAO:wd] is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:2001980 ! vertebral element 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002042 name: parapophysis 5 def: "Parapophysis that is the lateral projection from the fifth centrum." [TAO:wd] is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:2001732 ! vertebral element 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002043 name: posterior limb of parapophysis 4 def: "Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] synonym: "posterior branch of parapophysis 4" EXACT [TAO:0002043] synonym: "posterior wing of parapophysis 4" EXACT [TAO:0002043] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001971 ! parapophysis 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002044 name: anterior limb of parapophysis 4 def: "Process that arises and projects anterolaterally from parapophysis 4. Anterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] synonym: "anterior branch of parapophysis 4" EXACT [TAO:0002044] synonym: "anterior wing of parapophysis 4" EXACT [TAO:0002044] synonym: "Mullerian ramus" EXACT [TAO:0002044] synonym: "Müllerian ramus" EXACT [TAO:0002044] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:2001971 ! parapophysis 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002049 name: obsolete alarm substance cell def: "Epithelial cell that produces a chemical that triggers antipredator behavior." [TAO:wd] comment: replace with CL_0007021 once cl is released. is_obsolete: true [Term] id: UBERON:2002050 name: obsolete Schreckstoff def: "Chemical substance that functions as an alarm signal." [PHENOSCAPE:wd] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: CHEBI:133299 [Term] id: UBERON:2002051 name: scale circulus def: "Fine ridge on surface of scale, often parallel to the circumference of scale." [TAO:wd] synonym: "circuli" EXACT OMO:0003004 [TAO:0002051] synonym: "crétule" EXACT [PSPUB:0000149] xref: ZFA:0005499 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002052 name: prootic depression def: "Shallow area that exists on the prootic." [TAO:wd] xref: ZFA:0005510 is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002053 name: bony plate def: "Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series." [TAO:wd] synonym: "armor" EXACT [TAO:0002053] synonym: "armor plate" EXACT [TAO:0002053] synonym: "osteoderms" EXACT [TAO:0002053] xref: ZFA:0005532 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0002199 ! integument relationship: part_of UBERON:2002096 ! bony plate series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002054 name: vertebra 5-vertebra 6 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses." [TAO:wd] xref: ZFA:0005505 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002055 name: vertebra 6 - vertebra 7 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7." [TAO:wd] xref: ZFA:0005506 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002056 name: hypural 6 is_a: UBERON:2000364 ! hypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002057 name: gill opening def: "Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head." [TAO:wd] comment: In teleosts, there is typically a single gill opening posterior to the operculum. synonym: "branchial aperture" EXACT [TAO:0002057] synonym: "branchial opening" EXACT [TAO:0002057] synonym: "gill aperture" EXACT [TAO:0002057] synonym: "opercular opening" EXACT [TAO:0002057] xref: ZFA:0005389 is_a: UBERON:0000464 ! anatomical space relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0001042 ! chordate pharynx property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002058 name: Weberian complex centrum def: "Centrum that is the fusion of centra 2-4." [TAO:wd] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002059 name: posttemporal-parietal joint is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002061 name: predorsal vertebra def: "Vertebra that is positioned between the vertebra immediately anterior to the first dorsal-fin pterygiophore to the anteriormost vertebra." [TAO:wd] is_a: UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002062 name: branched caudal fin ray def: "Caudal fin lepidotrichium that is distally branched." [TAO:wd] xref: ZFA:0005533 is_a: UBERON:4000174 ! caudal fin lepidotrichium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002063 name: nuchal plate series def: "Anatomical cluster that consists of more than one type of nuchal plate in an individual." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002064 name: uroneural 1 def: "Uroneural that is the anteriormost element of the uroneural series." [TAO:wd] is_a: UBERON:2000602 ! uroneural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002065 name: ural centrum 1 def: "A vertebral centrum that is immediately posterior to preural vertebra 1. Ural centrum 1 is an unpaired median bone." [TAO:GA_TG, TAO:wd] comment: Ural centrum 1 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent and with hypural 1 ventrally. Ural centrum 1 may be defined also as the first ural centrum bearing hypurals 1 and 2 (diural terminology). is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:2002085 ! ural centrum relationship: part_of UBERON:2002163 ! ural vertebra 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002066 name: auditory fenestra def: "Opening in the neurocranium to allow communication between the swimbladder and the inner ear." [TAO:wd] xref: ZFA:0005418 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002067 name: upper hypural set def: "Anatomical cluster including hypural 3 and more dorsal hypurals that supports the dorsal series of principal caudal lepidotrichia or rays. The upper hypural set articulates or fuses to ural centra 3, 4 or 5 (polyural terminology) or ural centrum 2 (diural terminology) depending on the teleost subgroup. The upper hypural set is composed of unpaired median bones." [TAO:GA_TG, TAO:wd] comment: The number of hypurals included in the upper hypural set differs among teleostean subgroups. In basal teleosts this may include hypurals 3 to 9 or 10, whereas in more advanced groups this many include hypurals 3 to 5 or even less. synonym: "upper hypurals" EXACT [TAO:0002067] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002068 name: lower hypural set def: "Anatomical cluster including hypurals 1 and 2 that supports part of the ventral principal caudal lepidotrichia or rays and that separates from the dorsal hypural set through the hypural diastema. The lower hypural set articulates or fuses to ural centra 1 and 2 (polyural terminology) or ural centrum 1 (diural terminology) depending on the teleost subgroup. The lower hypural set is composed of unpaired median bones." [TAO:GA_TG, TAO:wd] synonym: "lower hypurals" EXACT [TAO:0002068] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002069 name: distal cartilage of posterior process of basipterygium def: "Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001539 ! basipterygium cartilage relationship: part_of UBERON:2001734 ! posterior process of basipterygium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002070 name: internal anterior process of basipterygium def: "Process that is bony and arises from anteromedial corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] synonym: "internal anterior arm of basipterygium" EXACT [TAO:0002070] synonym: "internal arm of the basipterygium" EXACT [TAO:0002070] synonym: "mesial anterior arm of basipterygium" EXACT [TAO:0002070] synonym: "mesial anterior process of basipterygium" EXACT [TAO:0002070] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002071 name: distal cartilage of internal anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002072 name: middle anterior process of basipterygium def: "Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially." [TAO:wd] synonym: "middle anterior arm of basipterygium" EXACT [TAO:0002072] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002073 name: distal cartilage of middle anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002074 name: external anterior process of basipterygium def: "Process that is bony and arises from anterolateral corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] synonym: "external anterior arm of basipterygium" EXACT [TAO:0002074] synonym: "external arm of basipterygium" EXACT [TAO:0002074] synonym: "lateral anterior process of basipterygium" EXACT [TAO:0002074] synonym: "lateral pelvic process" EXACT [http://hdl.handle.net/10088/11710] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002075 name: distal cartilage of external anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002076 name: lateral process of basipterygium def: "Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally." [TAO:wd] synonym: "posterolateral process of basipterygium" EXACT [TAO:0002076] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002077 name: lateropterygium def: "Bone that is attached or adjacent to lateral margin of basipterygium and anterior to pelvic fin lepidotrichium 1. The lateropterygium is a paired bone." [TAO:wd] comment: The lateropterygium is present only in a few teleostean subgroups, e.g., some siluriforms. is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:0004376 ! fin bone is_a: UBERON:0010742 ! bone of pelvic complex relationship: part_of UBERON:0010711 ! pelvic fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002078 name: hypural plate def: "Perichondrally ossified bone that results from the fusion of two or more hypurals and support a variable number of principal caudal lepidotrichia. The hypural plate is an unpaired median bone." [TAO:GA_TG] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002079 name: leptocephalous larva def: "Larval stage in some teleosts before metomorphosis." [TAO:wd] is_a: UBERON:0002548 ! larva property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002080 name: spina occipitalis def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002082 name: basal fulcrum def: "Fulcrum that is large, laterally expanded, paired or unpaired, scale-like, and that precedes the base of a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:GA_TG] comment: Basal fulcra may precede the median fins or both of the paired and median fins. Basal fulcra may be lanceolate, leaf-like or arrow-like in shape. The series of basal fulcra may be formed by unpaired plus paired elements depending on the fish group. Most teleosts lack basal fulcra. For additional information on basal fulcra see Arratia (2008, 2009). synonym: "basal fulcra" EXACT OMO:0003004 [TAO:0002082] is_a: UBERON:2002291 ! fulcrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002083 name: fringing fulcrum def: "Fulcrum that is a small, paired dermal structure associated with the marginal, leading rays of paired and/or unpaired fins. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] synonym: "fringing fulcra" EXACT OMO:0003004 [TAO:0002083] is_a: UBERON:2002291 ! fulcrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002084 name: pleurostyle def: "Postero-dorsal process of preural vertebra 1 or postero-dorsal process of the compound terminal centrum. The pleurostyle is a paired membrane bone." [TAO:GA_TG] comment: The pleurostyle is currently interpreted as a modified pair of uroneurals that fuse to preural vertebra 1 or compound centrum early in ontogeny. However, it is unclear which pair of the series of uroneurals forms the pleurostyle in different teleost subgroups. synonym: "uroneural" RELATED [TAO:0002084] synonym: "uroneural 1" RELATED [TAO:0002084] is_a: UBERON:2000602 ! uroneural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002085 name: ural centrum def: "A vertebral centrum that is posterior to preural vertebra 1 and consequently the most posterior vertebral centra. Ural centrum is a unpaired median bone." [TAO:GA_TG] comment: A ural centrum may be formed by a chordacentrum alone, or chordacentrum plus autocentrum or autocentrum alone depending on the teleost subgroup. An ural centrum may articulate or fuse with its neural arch dorsally or the neural arch my be absent and with a hypural ventrally. The term ural centrum was proposed by Nybelin (1963). For the composition and formation of caudal vertebrae and centra see Arratia (1991), Arratia and Schultze (1992) and Arratia et al. (2001). is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002086 name: pelvic axillary process def: "Anatomical cluster consisting of only a bony element or a combination of a bony element and one or more scales, or only modified scales, which lies in a fin fold at the base of the uppermost ray." [TAO:GA_TG] is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:0004376 ! fin bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010742 ! bone of pelvic complex relationship: part_of UBERON:0010711 ! pelvic fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002087 name: pectoral axillary process def: "Pectoral axillary process is an elongate structure formed by one or more additional postcleithra or modified scales or a combination of both, that is firmly attached to a skin fold above the articular condyle of the uppermost pectoral fin ray or lepidotrichium 1." [TAO:GA_TG, TAO:wd] comment: For additional information see Arratia (1997). is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:0004376 ! fin bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010741 ! bone of pectoral complex relationship: part_of UBERON:0010710 ! pectoral fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002088 name: interhaemal bone def: "A small bone articulating distally with the haemal arch or a short haemal spine." [TAO:wd] comment: Definition from Arratia 1999. is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002089 name: gular plate def: "Dermal bone located on the ventral surface of the skull and positioned between the two rami of the lower jaw. Anteriorly the gular attaches to the symphysis of the lower jaw through fibrous connective tissue. The gular is an unpaired median bone." [TAO:ga_tg, TAO:wd] comment: A gular plate is absent in most extant teleosts. synonym: "median gular" EXACT [TAO:0002089] synonym: "median gular plate" EXACT [] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002090 name: pro-otic fossa synonym: "prootic fossa" EXACT [TAO:0002090] xref: ZFA:0005492 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002091 name: median caudal cartilage def: "Cartilage associated with hypurals." [TAO:wd] comment: Definition from Johnson and Patterson 1993. is_a: UBERON:2001457 ! postcranial axial cartilage relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002092 name: rostral cartilage def: "Median chondrified cartilage bound to premaxillary ascending process by a rostro-premaxilla ligament." [TAO:wd] is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001709 ! upper jaw region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002094 name: dorsal fin pterygiophore 1 def: "Dorsal fin pterygiophore that is the anteriormost pterygiophore of the dorsal fin." [TAO:wd] xref: ZFA:0005364 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002095 name: ventromedial opening of posttemporal fossa def: "A third opening of the posttemporal fossa posteriorly located relative to the fossa. It is bordered completely by the epiocciptial, or by both the epioccipital and exoccipital." [PHENOSCAPE] {def="http://dx.doi.org/10.1590/S1679-62252010000300001"} comment: Present in some characiforms. synonym: "third posttemporal fossa" EXACT [] is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:2001753 ! posttemporal fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002096 name: bony plate series def: "Anatomical cluster that consists of more than one bony plate in an individual." [TAO:wd] synonym: "armor plate series" EXACT [TAO:0002096] is_a: UBERON:0010912 ! subdivision of skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002097 name: sensory canal pore series def: "Anatomical cluster that consists of more than one sensory canal pore." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002098 name: hemal spine series is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002099 name: lateral line scale series def: "Anatomical cluster that consists of more than one lateral line scale." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002101 name: branchiostegal ray series def: "Anatomical cluster that consists of the branchiostegal rays within an individual." [TAO:wd] synonym: "branchiostegals" RELATED [TAO:0002101] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002102 name: epibranchial series def: "Anatomical cluster that consists of the epibranchial elements within an individual." [TAO:wd] synonym: "epibranchials" EXACT OMO:0003004 [TAO:0002102] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002103 name: ceratobranchial series def: "Anatomical cluster that consists of the ceratobranchial elements within an individual." [TAO:wd] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002105 name: electrosensory lateral line lobe def: "Anatomical structure located in the hindbrain that receives primary electroreceptor input." [TAO:wd] comment: Definition reference: McNamara, AM., JP Denizot, CD Hopkins. 2005. Comparative Anatomy of the Electrosensory Lateral Line Lobe of Mormyrids: The Mystery of the Missing Map in the Genus Stomatorhinus (Family: Mormyridae). Brain, Behavior and Evolution 65:188-201. synonym: "ELL" EXACT [TAO:0002105] is_a: UBERON:0009662 ! hindbrain nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002106 name: eminentia granularis def: "Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses." [TAO:wd] comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] synonym: "EG" EXACT [TAO:0002106] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002107 name: medullary command nucleus def: "Anatomical structure that consists of two neuron types: pacemaker cells and relay cells. The medullary command nucleus commands the timing of the electric organ discharge." [TAO:wd] comment: Definition reference: Moortgat, KT, Bullock, TH, and Sejnowski TJ. 2000. J Neurophysiol 83: 971-983. Precision of the Pacemaker Nucleus in a Weakly Electric Fish: Network Versus Cellular Influences. synonym: "MCN" EXACT [TAO:0002107] synonym: "medullary pacemaker nucleus" EXACT [TAO:0002107] synonym: "pacemaker nucleus" EXACT [TAO:0002107] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002028 ! hindbrain property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002108 name: buccal papilla def: "Papilla that is part of the mouth." [TAO:wd] is_a: UBERON:2001995 ! papilla relationship: part_of UBERON:0000165 ! mouth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002109 name: uroneural 2 is_a: UBERON:2000602 ! uroneural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002110 name: metapterygoid-quadrate fenestra is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002111 name: prootic bulla xref: ZFA:0005500 is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002112 name: preural 3 vertebra synonym: "preural centrum 3" EXACT [TAO:0002112] synonym: "pu3" EXACT [TAO:0002112] is_a: UBERON:2000734 ! preural vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002114 name: cotylephore def: "Multi-tissue structure that is a transient outgrowth of tissue on skin brooding fish that acts as an attachment site for embryos." [TAO:wd] comment: Definition reference: James Wetzel, John P. Wourms and John Friel 1997. Comparative morphology of cotylephores in Platystacus and Solenostomus: modifications of the integument for egg attachment in skin-brooding fishes. Environmental Biology of Fishes. Volume 50, Number 1 / September, 1997. Pages 13 - 25. synonym: "cotylephores" EXACT OMO:0003004 [TAO:0002114] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0005156 ! reproductive structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002115 name: uroneural 3 is_a: UBERON:2000602 ! uroneural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002116 name: epibranchial organ is_a: UBERON:0003103 ! compound organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001042 ! chordate pharynx property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002117 name: ovipositor def: "Organ that functions in egg deposition." [TAO:wd] is_a: UBERON:0003103 ! compound organ is_a: UBERON:0005156 ! reproductive structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002118 name: scale radius def: "Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli." [ISBN-10:0226870138] synonym: "radii" EXACT OMO:0003004 [TAO:0002118] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002119 name: dermal scale focus comment: A demarcation on the scale signfiyning the initial growth point. Requires further classification see Lagler 1947. is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002120 name: orbitosphenoid septum is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0002478 ! orbitosphenoid property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002122 name: pouch scale def: "Scale that forms part of the posterior border of the caudal-fin organ. Pouch scales are usually hypertrophied." [TAO:wd] comment: Definition reference: Weitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of the Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a description of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS, Lucena CAS, editors. Phylogeny and Classification of Neotropical Fishes. Porto Alegre: EDIPUCRS. p 171-192. is_a: UBERON:0007380 ! dermal scale relationship: part_of UBERON:2002125 ! caudal-fin organ property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002123 name: neural arch 5 is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002124 name: nuptial tubercle def: "Surface structure that is a small protuberance on the surface of the body. Nuptial tubercles primarily function to facilitate contact between individuals for breeding." [TAO:wd] comment: Nuptial tubercles may be keratinized or nonkeratinized. Also may function in territorial defense or stimulation of females in breeding.\n\nDefinition reference: Wiley, M. L. and B. B. Collette. 1970. Breeding tubercles and contact organs in fishes: Their occurrence, structure, and significance. Bull Am Mus Nat Hist 143: 143-216. synonym: "breeding tubercle" EXACT [TAO:0002124] synonym: "contact organ" EXACT [TAO:0002124] is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002125 name: caudal-fin organ def: "Organ that consists of a pouch located on the ventral caudal-fin lobe, opening posteriorly, and composed of glandular tissue. The caudal-fin organ presumably functions to secrete pheromones during courtship." [TAO:wd] comment: Definition reference:\nWeitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of\nthe Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a\ndescription of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS,\nLucena CAS, editors. Phylogeny and Classification of Neotropical Fishes.\nPorto Alegre: EDIPUCRS. p 171-192. synonym: "caudal fin organ" EXACT [TAO:0002125] synonym: "caudal organ" BROAD [TAO:0002125] synonym: "caudal sac" EXACT [TAO:0002125] synonym: "glandular organ" BROAD [TAO:0002125] is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:4000164 ! caudal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002126 name: caudal-fin ray pump def: "Anatomical cluster that consists of thickened caudal-fin rays modified into a pumping mechanism associated with the caudal-fin organ." [TAO:wd] comment: Caudal fin rays can vary in thickness and form of the pump can vary from a simple open groove to complex chambered structure.\n\nDefinition reference:\nWeitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of\nthe Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a\ndescription of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS,\nLucena CAS, editors. Phylogeny and Classification of Neotropical Fishes.\nPorto Alegre: EDIPUCRS. p 171-192. is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000164 ! caudal fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002127 name: myorhabdoid bone def: "Intermuscular bone that is located in the dorsal and ventral forward flexures of the myoseptum." [TAO:wd] comment: Definition reference:\nPatterson, C., Johnson, G.D. 1995. The intermuscular bones and ligaments of teleostean fishes. Smithosonian Contributions to Zoology 559:1-85. synonym: "myorhabdoi" EXACT OMO:0003004 [TAO:0002127] is_a: UBERON:2000526 ! intermuscular bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002128 name: cavum sinus imparis synonym: "cavum sinus impar" EXACT [TAO:0002128] is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002129 name: caudal rod def: "Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage." [TAO:wd] comment: Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC\nRELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES\n(OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA . Journal\nof Vertebrate Paleontology 27(1):17-25 synonym: "hypural-opisthural rod" EXACT [TAO:0002129] is_a: UBERON:0000481 ! multi-tissue structure relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002130 name: caudal appendage def: "Multi-tissue structure that is region of the body posterior to the last anal-fin ray." [TAO:wd] comment: Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones.\nDefinition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. synonym: "caudal filament" EXACT [TAO:0002130] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002131 name: obsolete horizontal septum def: "Anatomical structure that consists of a sheet of connective tissue attached to the vertebral column and dividing the epaxial and hypaxial musculature." [TAO:wd] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0003901 [Term] id: UBERON:2002132 name: hypural 7 is_a: UBERON:2000364 ! hypural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002133 name: dorsal organ def: "Surface structure that is a midsaggital strap of flattened ectodermal tissue extending along the posterodorsal midline." [TAO:wd] comment: Dorsal organ is a structure found in apteronotid gymnotiform fishes. Definition reference:\n\nAlbert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical electric fish (Osteichthyes: Gymnotiformes) from the Upper Miocene of Bolivia. Journal of Vertebrate Paleontology 27:17-25. is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002141 name: annular ligament def: "Ligament that is in the eye and is located at the angle between the cornea and the iris." [ZFA:curator] xref: ZFA:0001676 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002144 name: obsolete anterior catecholaminergic tract def: "CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract." [ZFIN:ZDB-PUB-091221-28] xref: ZFA:0005342 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002145 name: anterior swim bladder bud def: "Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder." [ZFIN:090511-18] xref: ZFA:0005337 is_a: UBERON:0000479 ! tissue relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002147 name: arrector muscle xref: ZFA:0005275 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002149 name: vertebral element 9 def: "Vertebra that is posteriorly adjacent to vertebra 8." [TAO:curator] xref: ZFA:0005351 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "9" xsd:nonNegativeInteger [Term] id: UBERON:2002150 name: vertebral element 10 def: "Vertebra that is posteriorly adjacent to vertebra 9." [TAO:curator] xref: ZFA:0005353 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "10" xsd:nonNegativeInteger [Term] id: UBERON:2002151 name: vertebral element 11 def: "Vertebra that is posteriorly adjacent to vertebra 10." [TAO:wd] xref: ZFA:0005354 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "11" xsd:nonNegativeInteger [Term] id: UBERON:2002152 name: vertebral element 12 def: "Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib." [TAO:wd] xref: ZFA:0005352 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: vertebra_number "12" xsd:nonNegativeInteger [Term] id: UBERON:2002154 name: opercular cavity def: "Anatomical space which is located beneath the operculum and external to the gills." [ZFIN:curator] xref: ZFA:0001654 is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002158 name: obsolete palatine def: "Compound endochdondral and dermal bone that results from the fusion of the dermal dermopalatine and the endochondral autopalatine and forms the antero-lateral region of the palate. Commonly, it articulates with the maxilla antero-laterally and with the ethmoidal region medially. The palatine is paired." [TAO:GA_TG] comment: Depending on the teleostean group, the palatine may articulate with the entopterygoid posteriorly. The term palatine is usually used for the more advanced teleosts with a large autopalatine and a small dermopalatine represented by a few teeth. property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0001682 [Term] id: UBERON:2002159 name: caudal basal fulcrum def: "Basal fulcrum that precedes a caudal fin lobe. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:GA_TG] comment: Caudal basal fulcra precede the bases of both lobes of the caudal fin or only the dorsal one in basal teleosts. Most teleosts lack basal fulcra on the caudal fin. For additional information on basal fulcra see Arratia (2008, 2009). synonym: "caudal basal fulcra" EXACT OMO:0003004 [TAO:0002159] is_a: UBERON:2002082 ! basal fulcrum relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002160 name: ural centrum 3 def: "A vertebral centrum that is located immediately posterior to ural centrum 2 (polyural terminology). Ural centrum 3 articulates with hypural 3 ventrally. Ural centrum 3 is an unpaired median bone." [TAO:GA_TG] comment: Ural centrum 3 lacks a neural arch in teleosts. is_a: UBERON:2002085 ! ural centrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002161 name: ural centrum 4 def: "A vertebral centrum that is located immediately posterior to ural centrum 3 (polyural terminology) and may fuse to ural centrum 3 early in ontogeny. Ural centrum 4 articulates with hypural 4 ventrally. Ural centrum 4 is an unpaired median bone." [TAO:GA_TG] comment: Ural centrum 4 lacks a neural arch in teleosts. is_a: UBERON:2002085 ! ural centrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002162 name: ural vertebra def: "Vertebra that is incomplete or rudimentary and may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent. Ural vertebrae are one of the last bony elements of the vertebral column, usually smaller than the preural centra. Ural vertebrae are numbered beginning from anterior (1) to posterior (2, 3, 4, etc.). Ural vertebra is an unpaired median bone." [TAO:GA_TG] is_a: UBERON:0001095 ! caudal vertebra is_a: UBERON:0004376 ! fin bone relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/tracker/294" xsd:string [Term] id: UBERON:2002163 name: ural vertebra 1 def: "Ural vertebra that is located directly posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 1 (polyural terminology). Ural vertebra 1 is an unpaired median bone." [TAO:GA_TG] comment: Ural vertebrae 1 may be defined also as the first ural vertebrae bearing hypurals 1 and 2 (diural terminology). is_a: UBERON:2002162 ! ural vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002164 name: caudal principal ray set def: "Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones." [TAO:GA_TG] comment: In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). The presence of marginal principal caudal rays as long or longer than the branched-and-segmented principal rays is a synapomorphy of teleosts (Arratia, 2008, 2009). synonym: "branched caudal rays" EXACT [TAO:0002164] synonym: "caudal principal lepidotrichia" EXACT OMO:0003004 [TAO:0002164] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002165 name: caudal procurrent ray set def: "An anatomical cluster of short rays, shorter than the principal ones, which form the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with neural spines, epurals and uroneurals (dorsal series) and haemal spines of preural vertebrae (ventral series) (Arratia, 2008). The anteriormost procurrent rays are commonly unsegmented, but the posteriormost ones are usually segmented. The procurrent rays are numbered from caudal to rostral direction. The caudal procurrent ray series is an unpaired median series." [TAO:Arratia_2008, TAO:GA_TG] synonym: "caudal precurrent rays" EXACT [TAO:0002165] synonym: "caudal spiny rays" EXACT [TAO:0002165] synonym: "rudimentary rays" EXACT [TAO:0002165] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002166 name: pseudourostyle def: "An elongate lateral process ventrally placed to the proximal region of the pleurostyle. The pseudourostyle is paired." [TAO:GA_TG] comment: The pseudourostyle occurs only in certain teleost subgroups. It may be well developed in certain characiforms. is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2002084 ! pleurostyle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002167 name: stegural alt_id: UBERON:2002081 def: "Modified neural arch, probably of ural centrum 4, formed by a bony base that may extend along the dorso-lateral surfaces of ural centra and preural centra 1 or 2 and by a well-developed antero-dorsal membranous projection that extends lateral to the base of epural(s) and anterior toward the neural arches and/or spines of preural centra 1 or 2 (Arratia and Schultze, 1992). The stegural is a paired bone." [TAO:GA_TG] comment: It is unclear if the structure named stegural is homologous among teleost subgroups. synonym: "uroneural" RELATED [TAO:0002167] is_a: UBERON:2000602 ! uroneural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002168 name: preural centrum 1 + ural centrum 1 + ural centrum 2 def: "Urostyle that is the result of fusion of preural centrum 1 with ural centra 1 and 2." [TAO:wd] is_a: UBERON:0003106 ! urostyle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002172 name: branchial mesenchyme xref: ZFA:0001650 is_a: UBERON:0005253 ! head mesenchyme property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002174 name: octaval nerve motor nucleus def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [PMID:17182783] xref: ZFA:0001697 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002175 name: rostral octaval nerve motor nucleus synonym: "ROLE" EXACT [TAO:0002175] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [TAO:0002175] xref: ZFA:0001698 is_a: UBERON:2002174 ! octaval nerve motor nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002176 name: caudal octaval nerve motor nucleus xref: ZFA:0001699 is_a: UBERON:2002174 ! octaval nerve motor nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002179 name: obsolete peripheral nucleus of ventral telencephalon def: "Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: ZFA:0001667 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002180 name: obsolete central nucleus of ventral telencephalon def: "Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus centralis" EXACT [TAO:0002180] xref: ZFA:0001668 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002185 name: climbing fiber def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] xref: ZFA:0001711 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002192 name: dorsolateral motor nucleus of vagal nerve def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhomobomere 8." [ZFIN:ZDB-PUB-090417-11] synonym: "dlX" EXACT [TAO:0002192] xref: ZFA:0001695 is_a: UBERON:2000297 ! vagal lobe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002193 name: dorsolateral septum def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [ZFIN:ZDB-PUB-961014-383] synonym: "dorsal bar" RELATED [TAO:0002193] xref: ZFA:0001672 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001841 ! anterior semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002195 name: epidermal placode def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] xref: ZFA:0001703 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002025 ! stratum basale of epidermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002198 name: obsolete head muscle def: "Muscle which is part of the head." [ZFIN:curator] synonym: "cephalic muscle" EXACT [TAO:0002198] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0002376 [Term] id: UBERON:2002199 name: obsolete hindbrain commissure def: "CNS white matter that crosses the midline within the hindbrain." [ZFIN:ZDB-PUB-090417-11] xref: ZFA:0001692 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002200 name: hypobranchial muscle def: "Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape." [ZFIN:ZDB-PUB-080306-33] synonym: "sternohyoideus" RELATED [TAO:0002200] xref: ZFA:0001651 is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002202 name: intermediate nucleus def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2] xref: ZFA:0001669 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002203 name: obsolete immature Schwann cell comment: Range covers Schwann cell precursor and immature Schwann cell, should be split and put into CL. xref: ZFA:0001725 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002204 name: obsolete lateral nucleus of ventral telencephalon def: "Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus lateralis" EXACT [TAO:0002204] xref: ZFA:0000176 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002206 name: macula communis xref: ZFA:0001671 is_a: UBERON:0006937 ! inner ear epithelium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002207 name: medial motor nucleus of vagal nerve synonym: "mmX" EXACT [TAO:0002207] xref: ZFA:0001696 is_a: UBERON:2000297 ! vagal lobe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002208 name: obsolete mesonephric podocyte def: "Podocyte that is part of the kidney (mesonephros)." [ZFIN:curator] xref: ZFA:0001674 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002210 name: mossy fiber xref: ZFA:0001710 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002213 name: obsolete optic nerve head def: "Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye." [ZFIN:curator] comment: removed axiom: part_of some 'cranial nerve II' synonym: "optic nerve heads" EXACT OMO:0003004 [TAO:0002213] xref: ZFA:0001625 is_obsolete: true replaced_by: UBERON:0001783 [Term] id: UBERON:2002214 name: os suspensorium medial flange xref: ZFA:0001599 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000461 ! Weberian ossicle relationship: part_of UBERON:2001171 ! os suspensorium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002215 name: otic vesicle protrusion xref: ZFA:0001715 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003051 ! ear vesicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002216 name: otic vesicle ventral protrusion xref: ZFA:0001716 is_a: UBERON:2002215 ! otic vesicle protrusion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002217 name: parasphenoid-pterosphenoid joint is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002218 name: parallel fiber, teleost def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it does not bifurcate and synapses on the dendritic branches of Purkinje cells and stellate cells. The parallel fibers in teleost fish do not bifurcate in contrast to other vertebrates." [doi:10.1007/978-94-007-1333-8_63] synonym: "parallel fibers" EXACT OMO:0003004 [TAO:0002218] xref: ZFA:0001713 is_a: UBERON:0000479 ! tissue is_a: UBERON:0700019 ! parallel fiber relationship: part_of UBERON:2000394 ! molecular layer corpus cerebelli relationship: part_of UBERON:2000913 ! molecular layer valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002219 name: parvocellular preoptic nucleus xref: ZFA:0001680 is_a: UBERON:0006569 ! diencephalic nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002221 name: pericardial muscle xref: ZFA:0001653 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005177 ! trunk region element relationship: part_of UBERON:0001774 ! skeletal muscle of trunk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002222 name: obsolete periventricular nucleus of ventral telencephalon xref: ZFA:0001666 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002223 name: pillar of the semicircular canal xref: ZFA:0001717 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002224 name: pleuroperitoneal cavity xref: ZFA:0001656 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002323 ! coelemic cavity lumen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002225 name: posterior pronephric duct synonym: "posterior pronephric ducts" EXACT OMO:0003004 [TAO:0002225] xref: ZFA:0001623 is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0003060 ! pronephric duct property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002226 name: preglomerular nucleus def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ZFIN:curator] xref: ZFA:0001662 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002229 name: presumptive atrium primitive heart tube xref: ZFA:0001721 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0005498 ! primitive heart tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002232 name: presumptive cardiac ventricle primitive heart tube xref: ZFA:0001720 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0005498 ! primitive heart tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002235 name: presumptive ventral mesoderm xref: ZFA:0001714 is_a: UBERON:0006603 ! presumptive mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002237 name: obsolete pronephric podocyte def: "Podocyte that is part of the pronephros." [ZFIN:curator] xref: ZFA:0001673 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2002240 name: Purkinje cell layer corpus cerebelli xref: ZFA:0001706 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000188 ! corpus cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002241 name: Purkinje cell layer valvula cerebelli xref: ZFA:0001709 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002242 name: scale primordium xref: ZFA:0001704 is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0002067 ! dermis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002244 name: supraoptic tract synonym: "SOT" EXACT [TAO:0002244] xref: ZFA:0001657 is_a: UBERON:0003544 ! brain white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002248 name: supratemporal commissure def: "Lateral line canal that that crosses the supratemporal region posterior to the openings of the endolymphatic ducts and connects the lateral canals of each side." [DOI:10.1002/cne.900280102] comment: Not clear what the taxon constraints are here. The cited reference discusses two species of dogfish. is_a: UBERON:1500003 ! lateral line canal lumen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002249 name: ctenius synonym: "ctenii" EXACT OMO:0003004 [TAO:0002249] is_a: UBERON:0013703 ! integumentary projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2002273 ! ctenoid scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002250 name: epural 2 is_a: UBERON:2000660 ! epural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002251 name: epural 3 is_a: UBERON:2000660 ! epural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002252 name: epural 1 is_a: UBERON:2000660 ! epural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002253 name: obsolete pyloric caecum synonym: "pyloric appendage" EXACT [TAO:0002253] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: UBERON:0008248 [Term] id: UBERON:2002255 name: ocular side def: "Organism subdivision that is the side of the body possessing eyes." [TAO:wd] synonym: "eyed side" EXACT [TAO:0002255] is_a: UBERON:0000475 ! organism subdivision property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002256 name: blind side def: "Organism subdivision that is the side of the body lacking eyes." [TAO:wd] is_a: UBERON:0000475 ! organism subdivision property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002257 name: premaxilla dentigerous process synonym: "premaxilla alveolar process" EXACT [TAO:0002257] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002258 name: trituration tooth is_a: UBERON:0001091 ! calcareous tooth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002260 name: premaxillary-maxillary joint def: "Joint that articulates the premaxilla and maxilla. Premaxillary-maxillary joint is paired." [TAO:wd] is_a: UBERON:2001950 ! inter-premaxillary joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002261 name: dorsal fin spine synonym: "dorsal spine" RELATED [] is_a: UBERON:4000177 ! dorsal fin lepidotrichium is_a: UBERON:4200070 ! median fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002262 name: anal fin spine is_a: UBERON:4000176 ! anal fin lepidotrichium is_a: UBERON:4200070 ! median fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002263 name: epineural 1 is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002264 name: epineural 2 is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002265 name: epineural 3 is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002266 name: epineural 4 is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002267 name: epineural 5 is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002268 name: epineural 6 is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002269 name: interarcual cartilage def: "Pharyngeal arch cartilage located between uncinate process of epibranchial 1 and pharyngobranchial 2." [TAO:wd] comment: An interarcual cartilage is present in percomorph fishes (Johnson and Patterson 1993). synonym: "IAC" EXACT [TAO:0002269] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002270 name: pelvic fin spine synonym: "pelvic spine" EXACT [TAO:0002270] is_a: UBERON:4000173 ! pelvic fin lepidotrichium is_a: UBERON:4500009 ! paired fin spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002271 name: ventral caudal procurrent ray 2 is_a: UBERON:2001830 ! caudal fin ventral procurrent ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002272 name: ventral caudal procurrent ray 1 is_a: UBERON:2001830 ! caudal fin ventral procurrent ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002273 name: ctenoid scale def: "Scale that possesses cteni (discrete spines)." [TAO:wd] is_a: UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002274 name: transforming ctenoid scale def: "Ctenoid scale with two or three alternating rows of cteni marginally and truncated cteni submarginally. (Roberts 1993)." [TAO:wd] is_a: UBERON:2002273 ! ctenoid scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002275 name: Jakubowski's organ def: "Neuromast of the supraorbital sensory canal in the nasal bone. It is innervated by the buccal nerve rather than by the supraorbital nerve, which invariably innervates neuromasts of the supraorbital canal. (Johnson and Patterson 1993)." [TAO:wd] is_a: UBERON:0008904 ! neuromast property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002276 name: obsolete median fin def: "Fin that is an unpaired fin located in the sagittal plane of the organism." [TAO:wd] synonym: "nageoire impaire" EXACT [PSPUB:0000164] synonym: "périssoptérygie" EXACT [PSPUB:0000140] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: VSAO:0000162 [Term] id: UBERON:2002277 name: pectoral fin distal radial bone 1 def: "Pectoral fin distal radial 1 element that is composed of bone tissue." [OBOL:automatic] is_a: UBERON:2001588 ! pectoral fin distal radial bone is_a: UBERON:2102277 ! pectoral fin distal radial element 1 relationship: develops_from UBERON:2202277 ! pectoral fin distal radial cartilage 1 [Term] id: UBERON:2002279 name: pectoral fin distal radial bone 2 def: "Pectoral fin distal radial 2 element that is composed of bone tissue." [OBOL:automatic] is_a: UBERON:2001588 ! pectoral fin distal radial bone is_a: UBERON:2102279 ! pectoral fin distal radial element 2 relationship: develops_from UBERON:2202279 ! pectoral fin distal radial cartilage 2 [Term] id: UBERON:2002280 name: pectoral fin distal radial bone 3 def: "Pectoral fin distal radial 3 element that is composed of bone tissue." [OBOL:automatic] is_a: UBERON:2001588 ! pectoral fin distal radial bone is_a: UBERON:2102280 ! pectoral fin distal radial element 3 relationship: develops_from UBERON:2202280 ! pectoral fin distal radial cartilage 3 [Term] id: UBERON:2002281 name: retractor posttemporalis is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002282 name: preopercle-opercle joint def: "Joint that articulates the preopercle and opercle. Preopercle-opercle joint is paired." [TAO:wd] is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002283 name: melanophore spot synonym: "spot" EXACT [TAO:0002283] synonym: "spots" EXACT OMO:0003004 [TAO:0002283] is_a: UBERON:2002284 ! body marking property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002284 name: body marking def: "Surface structure that is a visible mark on the body resulting from pigmentation." [TAO:wd] synonym: "markings" EXACT OMO:0003004 [TAO:0002284] is_a: UBERON:3000961 ! external integument structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002285 name: cycloid scale def: "Scale that is smooth-edged, round or oval and composed of acellular dermal bone lacking small spines on the posterior exposed edge. (from http://www.briancoad.com/Dictionary/introduction.htm)." [TAO:wd] comment: Typical of many teleosts. Some cycloid scales may have a serrated margin and are then termed spinoid scales. (from http://www.briancoad.com/Dictionary/introduction.htm). is_a: UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002288 name: obsolete aqueous humor def: "Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells." [ZFIN:ZDB-PUB-050701-15] xref: ZFA:0005564 is_obsolete: true replaced_by: UBERON:0001796 [Term] id: UBERON:2002289 name: obsolete sclera def: "Multi-tissue structure that composes the opaque fibrous outer layer of the eye." [ZFIN:ZDB-PUB-050701-15] is_obsolete: true replaced_by: UBERON:0001773 [Term] id: UBERON:2002290 name: obsolete vitreous def: "Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye." [PMID:18344966] xref: ZFA:0005561 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0001797 [Term] id: UBERON:2002291 name: fulcrum def: "Dermal bone that is typically associated with a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] is_a: UBERON:0004376 ! fin bone is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002292 name: epaxial basal fulcrum def: "Basal fulcrum that is positioned at the dorsal or anterodorsal margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] synonym: "dorsal basal fulcra" RELATED OMO:0003004 [TAO:0002292] synonym: "dorsal basal fulcrum" EXACT [TAO:0002292] synonym: "epaxial basal fulcra" RELATED OMO:0003004 [TAO:0002292] is_a: UBERON:2002082 ! basal fulcrum relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002293 name: hypaxial basal fulcrum def: "Basal fulcrum that is positioned at the anteroventral margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] synonym: "hypaxial basal fulcra" EXACT OMO:0003004 [TAO:0002293] synonym: "ventral basal fulcra" EXACT OMO:0003004 [TAO:0002293] synonym: "ventral basal fulcrum" EXACT [TAO:0002293] is_a: UBERON:2002082 ! basal fulcrum relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002294 name: fish scute def: "Dermal bone that is an unpaired, scale-like structure. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] comment: temporarily relabeled 'fish scute' to distinguish from reptilian scute class. To DO: reconcile definitions for the two sets of classes. synonym: "ridge scale" EXACT [TAO:0002294] is_a: UBERON:0008907 ! dermal bone relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0002416 ! integumental system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005000 name: basal communicating artery synonym: "BCA" EXACT [TAO:0005000] xref: ZFA:0005000 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005010 name: mid cerebral vein def: "The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceede lateraly in a ventral direction to drain into the paired primordial midbrain channels (PHBC). ogai et al. 2001., Kimmel et al. 1993." [ZFIN:curator] synonym: "MCeV" EXACT [TAO:0005010] synonym: "mid-cerebral vein" EXACT [TAO:0005010] synonym: "middle cerebral vein" EXACT [TAO:0005010] xref: ZFA:0005010 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005011 name: pseudobranchial artery def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. Isogai et al. 2001." [ZFIN:curator] xref: ZFA:0005011 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005012 name: afferent filamental artery synonym: "AFA" EXACT [TAO:0005012] synonym: "afferent filamental arteries" EXACT OMO:0003004 [TAO:0005012] xref: ZFA:0005012 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000666 ! filamental artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005013 name: concurrent branch afferent branchial artery def: "The branch of the afferent branchial artery that continues posteriodorsally. Isogai et al. 2001." [ZFIN:curator] synonym: "CCB" EXACT [TAO:0005013] xref: ZFA:0005013 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005014 name: recurrent branch afferent branchial artery def: "The anterioventral proceeding branch of the afferent branchial artery. Isogai et al. 2001." [ZFIN:curator] synonym: "RCB" EXACT [TAO:0005014] synonym: "recurrent branch afferent branchial arteries" EXACT OMO:0003004 [TAO:0005014] xref: ZFA:0005014 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005015 name: afferent lamellar arteriole synonym: "afferent lamellar arterioles" EXACT OMO:0003004 [TAO:0005015] synonym: "AFL" EXACT [TAO:0005015] xref: ZFA:0005015 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005012 ! afferent filamental artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005017 name: primordial midbrain channel def: "The vessel between the anterior cerebral vein and the mid cerebral vein. Isogai et al. 2001." [ZFIN:curator] synonym: "PMBC" EXACT [TAO:0005017] xref: ZFA:0005017 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005018 name: efferent filamental artery synonym: "EFA" EXACT [TAO:0005018] xref: ZFA:0005018 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000202 ! efferent portion of pharyngeal arch artery relationship: part_of UBERON:2000666 ! filamental artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005019 name: efferent lamellar arteriole synonym: "efferent lamellar arterioles" EXACT OMO:0003004 [TAO:0005019] synonym: "ELA" EXACT [TAO:0005019] xref: ZFA:0005019 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005018 ! efferent filamental artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005020 name: central artery def: "Arteries that irrigate the forebrain and midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "CtA" EXACT [TAO:0005020] xref: ZFA:0005020 is_a: UBERON:0001637 ! artery is_a: UBERON:0003499 ! brain blood vessel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005021 name: cerebellar central artery def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC Isogai et al. 2001." [ZFIN:curator] synonym: "CCtA" EXACT [TAO:0005021] xref: ZFA:0005021 is_a: UBERON:2005020 ! central artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005022 name: opercular artery def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [ZFIN:curator] synonym: "external carotid artery" RELATED [TAO:0005022] synonym: "ORA" EXACT [TAO:0005022] xref: ZFA:0005022 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003119 ! pharyngeal arch artery 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005025 name: dorsal longitudinal anastomotic vessel def: "Trunk vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] synonym: "DLAV" EXACT [TAO:0005025] xref: ZFA:0005025 is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0003524 ! tail blood vessel relationship: part_of UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0010204 ! tail vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005026 name: primary head sinus def: "Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. Isogai et al. 2001." [ZFIN:curator] synonym: "lateral head vein" EXACT [TAO:0005026] synonym: "PHS" EXACT [TAO:0005026] xref: ZFA:0005026 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005027 name: posterior cerebral vein def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] synonym: "caudal cerebral vein" EXACT [TAO:0005027] synonym: "PCeV" EXACT [TAO:0005027] xref: ZFA:0005027 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005029 name: rostral blood island def: "Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005." [ZFIN:curator] synonym: "RBI" EXACT [TAO:0005029] xref: ZFA:0005029 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0009881 ! anterior lateral plate mesoderm relationship: part_of UBERON:0002390 ! hematopoietic system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005030 name: dorsal ciliary vein synonym: "DCV" EXACT [TAO:0005030] xref: ZFA:0005030 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: develops_from UBERON:2005082 ! dorsal branch nasal ciliary artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005031 name: dorsal longitudinal vein def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] synonym: "DLV" EXACT [TAO:0005031] xref: ZFA:0005031 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005032 name: optic vein def: "Vein that connects to the hyaloid vein that drains the eye. External to eye. Isogai et al. 2001." [ZFIN:curator] synonym: "OV" EXACT [TAO:0005032] xref: ZFA:0005032 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005034 name: parachordal vessel def: "Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. Isogai et al. 2003." [ZFIN:curator] synonym: "PAV" EXACT [TAO:0005034] xref: ZFA:0005034 is_a: UBERON:0003481 ! tail vein is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0002065 ! posterior cardinal vein relationship: develops_from UBERON:0007679 ! intersomitic vein relationship: part_of UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0010204 ! tail vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005036 name: supraintestinal artery def: "A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. Isogai et al. 2001." [ZFIN:curator] synonym: "SIA" EXACT [TAO:0005036] xref: ZFA:0005036 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005038 name: supraintestinal vein xref: ZFA:0005038 is_a: UBERON:0001638 ! vein is_a: UBERON:0003513 ! trunk blood vessel relationship: part_of UBERON:0002201 ! vasculature of trunk property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005039 name: anterior lateral mesoderm xref: ZFA:0005039 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003081 ! lateral plate mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005040 name: obsolete posterior lateral mesoderm synonym: "PLM" EXACT [TAO:0005040] xref: ZFA:0005040 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005044 name: optic artery def: "The artery that carries blood to the eye. It branches from the internal carotid artery and enters the eye ventrally through the optic fissure. Isogai et al. 2001." [ZFIN:curator] xref: ZFA:0005044 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005048 name: primitive prosencephalic artery def: "Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. Isogai et al. 2001." [ZFIN:curator] synonym: "PPrA" EXACT [TAO:0005048] xref: ZFA:0005048 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005049 name: prosencephalic artery def: "After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery." [ZFIN:curator] synonym: "PrA" EXACT [TAO:0005049] xref: ZFA:0005049 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:2005048 ! primitive prosencephalic artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005050 name: palatocerebral artery def: "The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. Isogai et al. 2001." [ZFIN:curator] synonym: "PLA" EXACT [TAO:0005050] xref: ZFA:0005050 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005051 name: communicating vessel palatocerebral artery def: "Connect the palatocerebral artery with the prosencephalic artery. Isogai et al. 2001." [ZFIN:curator] synonym: "CMV" EXACT [TAO:0005051] synonym: "communicating vessels" EXACT [TAO:0005051] xref: ZFA:0005051 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005052 name: anterior mesencephalic central artery def: "Arteries that irrigate rostral regions of the midbrain. They extend between the Basial communicating artery to the anterior cerebral vein. Isogai et al. 2001." [ZFIN:curator] synonym: "AMCtA" EXACT [TAO:0005052] synonym: "rostral mesencephalic central artery" EXACT [TAO:0005052] xref: ZFA:0005052 is_a: UBERON:2005020 ! central artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005053 name: nasal ciliary artery synonym: "NCA" EXACT [TAO:0005053] xref: ZFA:0005053 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005054 name: inner optic circle synonym: "IOC" EXACT [TAO:0005054] xref: ZFA:0005054 is_a: UBERON:0002203 ! vasculature of eye relationship: develops_from UBERON:2005082 ! dorsal branch nasal ciliary artery relationship: develops_from UBERON:2005083 ! ventral branch nasal ciliary artery relationship: part_of UBERON:0002200 ! vasculature of head property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005055 name: median palatocerebral vein def: "Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. Isogai et al. 2001." [ZFIN:curator] synonym: "MPLV" EXACT [TAO:0005055] xref: ZFA:0005055 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005056 name: palatocerebral vein def: "Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001." [ZFIN:curator] synonym: "PLV" EXACT [TAO:0005056] xref: ZFA:0005056 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005066 name: bulbus arteriosus outer layer def: "Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus externa" EXACT [TAO:0005066] xref: ZFA:0005066 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004706 ! bulbus cordis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005067 name: bulbus arteriosus middle layer def: "Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus media" EXACT [TAO:0005067] xref: ZFA:0005067 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0004706 ! bulbus cordis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005068 name: bulbus arteriosus inner layer def: "Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus intima" EXACT [TAO:0005068] xref: ZFA:0005068 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0004706 ! bulbus cordis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005072 name: endocardial ring xref: ZFA:0005072 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002165 ! endocardium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005073 name: atrioventricular ring synonym: "AV ring" EXACT [TAO:0005073] xref: ZFA:0005073 is_a: UBERON:2005072 ! endocardial ring relationship: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002082 ! cardiac ventricle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005074 name: central cardiac conduction system def: "Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods." [ZFIN:curator] xref: ZFA:0005074 is_a: UBERON:0002350 ! conducting system of heart property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005075 name: peripheral cardiac conduction system def: "Portion of the cardiac conduction system, with rapid impulse propagation." [ZFIN:curator] xref: ZFA:0005075 is_a: UBERON:0002350 ! conducting system of heart property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005076 name: obsolete primordial vasculature xref: ZFA:0005076 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005078 name: middle mesencephalic central artery def: "Project rostrally and dorsally from the AMCtA to to irrigate the midportion of the midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "MMCtA" EXACT [TAO:0005078] xref: ZFA:0005078 is_a: UBERON:2005020 ! central artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005079 name: posterior mesencephalic central artery def: "Project dorsally from BCA to irrigate the caudal part of midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "caudal mesencephalic central artery" EXACT [TAO:0005079] synonym: "PMCtA" EXACT [TAO:0005079] xref: ZFA:0005079 is_a: UBERON:2005020 ! central artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005080 name: anterior mesenteric artery def: "Unpaired artery departing from dorsal aorta, typically supplying the small intestine." [ISBN10:0073040584] synonym: "AMA" EXACT [TAO:0005080] synonym: "rostral mesenteric artery" EXACT [TAO:0005080] xref: ZFA:0005080 is_a: UBERON:0005616 {source="cjm"} ! mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005082 name: dorsal branch nasal ciliary artery xref: ZFA:0005082 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:2005053 ! nasal ciliary artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005083 name: ventral branch nasal ciliary artery xref: ZFA:0005083 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:2005053 ! nasal ciliary artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005084 name: metencephalic artery def: "These arteies branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. Isogai et al. 2001." [ZFIN:curator] xref: ZFA:0005084 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005085 name: nasal artery def: "The nasal arteries start at the internal carotid artey and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. Isogai et al. 2001." [ZFIN:curator] synonym: "NA" EXACT [TAO:0005085] xref: ZFA:0005085 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005087 name: pectoral vein synonym: "PV" EXACT [TAO:0005087] xref: ZFA:0005087 is_a: UBERON:0001638 ! vein is_a: UBERON:0007300 ! pectoral appendage blood vessel relationship: part_of UBERON:0007302 ! pectoral appendage vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005088 name: posterior mesenteric artery def: "Unpaired artery departing from dorsal aorta that typically supplies the large intestine." [ISBN10:0073040584] synonym: "caudal mesenteric artery" EXACT [TAO:0005088] synonym: "PMA" EXACT [TAO:0005088] xref: ZFA:0005088 is_a: UBERON:0005616 {source="cjm"} ! mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005089 name: swim bladder artery def: "An elaborate set of vessels that branche off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder. Isogai et al. 2001." [ZFIN:curator] synonym: "SBA" EXACT [TAO:0005089] xref: ZFA:0005089 is_a: UBERON:0001637 ! artery relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005093 name: nasal vein synonym: "NV" EXACT OMO:0003000 [TAO:0005093] xref: ZFA:0005093 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005097 name: caudal fin vasculature xref: ZFA:0005097 is_a: UBERON:0007304 ! appendage vasculature relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005098 name: central ray artery def: "Positioned in the intraray mesenchym between the hemirays of the lepidotrichia,. Huang et al. 2003." [ZFIN:curator] xref: ZFA:0005098 is_a: UBERON:0007304 ! appendage vasculature relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005099 name: ray vein def: "Lie flanking and just lateral to the fin ray, in the interray mesenchyme. Huang et al. 2003." [ZFIN:curator] xref: ZFA:0005099 is_a: UBERON:0007304 ! appendage vasculature relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005100 name: intervessel commissure def: "Vessels that travel between artery and veins or vein and vein in a single ray." [ZFIN:curator] synonym: "intervessel comisures" EXACT OMO:0003004 [TAO:0005100] xref: ZFA:0005100 is_a: UBERON:0007304 ! appendage vasculature relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005101 name: interray vessel def: "Vessels that travel between veins in adjacent rays." [ZFIN:curator] synonym: "interray vessels" EXACT OMO:0003004 [TAO:0005101] xref: ZFA:0005101 is_a: UBERON:0007304 ! appendage vasculature relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005102 name: presumptive median fin fold synonym: "presumptive median fin-fold" EXACT [TAO:0005102] xref: ZFA:0005102 is_a: UBERON:0006598 ! presumptive structure relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005103 name: presumptive ventral fin fold synonym: "presumptive ventral fin-fold" EXACT [TAO:0005103] xref: ZFA:0005103 is_a: UBERON:2005102 ! presumptive median fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005104 name: presumptive dorsal fin fold synonym: "presumptive dorsal fin-fold" EXACT [TAO:0005104] xref: ZFA:0005104 is_a: UBERON:2005102 ! presumptive median fin fold property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005106 name: longitudinal lateral lymphatic vessel synonym: "LLL" EXACT [TAO:0005106] xref: ZFA:0005106 is_a: UBERON:0004536 ! lymph vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005113 name: dorsal lateral line neuromast def: "Neuromast that is part of the dorsal lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast dorsal" EXACT [TAO:0005113] xref: TAO:0005113 xref: ZFA:0005113 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003095 ! dorsal lateral line [Term] id: UBERON:2005114 name: middle lateral line system xref: ZFA:0005114 is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005115 name: primary posterior lateral line primordium def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [ZFIN:curator] synonym: "primary posterior lateral line primordia" EXACT OMO:0003004 [TAO:0005115] synonym: "primI" EXACT [TAO:0005115] xref: ZFA:0005115 is_a: UBERON:2001157 ! posterior lateral line primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005116 name: secondary posterior lateral line primordium def: "Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction." [ZFIN:curator] synonym: "secondary posterior lateral line primordia" EXACT OMO:0003004 [TAO:0005116] xref: ZFA:0005116 is_a: UBERON:2001157 ! posterior lateral line primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005117 name: anterior lateral line primordium def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [ZFIN:curator] synonym: "anterior lateral line primordia" EXACT OMO:0003004 [TAO:0005117] xref: ZFA:0005117 is_a: UBERON:2000228 ! lateral line primordium relationship: part_of UBERON:2001468 ! anterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005118 name: middle lateral line primordium def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [ZFIN:curator] synonym: "middle lateral line primordia" EXACT OMO:0003004 [TAO:0005118] xref: ZFA:0005118 is_a: UBERON:2000228 ! lateral line primordium relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005119 name: barbel primordium def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [ZFIN:curator] synonym: "barbel primordia" EXACT OMO:0003004 [TAO:0005119] xref: ZFA:0005119 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005121 name: middle lateral line placode xref: ZFA:0005121 is_a: UBERON:0003067 ! dorsolateral placode relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005122 name: dorsal axial hypoblast xref: ZFA:0005122 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2001378 ! axial hypoblast property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005126 name: intestinal bulb epithelium def: "Intestinal epithelium which lines the lumen of the intestinal bulb." [ZFIN:curator] xref: ZFA:0005126 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:2001076 ! intestinal bulb property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005135 name: primary dental epithelium def: "Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth." [ZFIN:curator] synonym: "pharyngeal tooth epithelium" EXACT [TAO:0005135] synonym: "primary tooth epithelium" EXACT [TAO:0005135] xref: ZFA:0005135 is_a: UBERON:0003843 ! dental epithelium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005142 name: obsolete enameloid def: "Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0011692 [Term] id: UBERON:2005144 name: ampullary nerve def: "A branch of the 8th cranial nerve that innervates the cristae ampullaris." [ZFIN:curator] xref: ZFA:0005144 is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005149 name: distal epidermal cap of regenerating fin/limb def: "Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]." [ZFIN:curator] xref: TAO:0005149 xref: ZFA:0005149 is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb [Term] id: UBERON:2005150 name: basal regeneration epithelium of regenerating fin/limb def: "Layer of the wound epidermis that surrounds the blastema in the fin or limb[ZFA,modified]." [ZFIN:curator] synonym: "basal wound epidermis" EXACT [TAO:0005150] xref: TAO:0005150 xref: ZFA:0005150 is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb [Term] id: UBERON:2005151 name: obsolete gold iridophore def: "Iridescent iridophore containing gold reflecting platelets." [ZFIN:curator] xref: ZFA:0005151 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005152 name: obsolete silver iridophore def: "Iridescent iridophore containing silver reflecting platelets." [ZFIN:curator] xref: ZFA:0005152 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005170 name: extrahepatic duct def: "Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct." [ZFIN:curator] xref: ZFA:0005170 is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0005171 ! hepatic duct property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005174 name: ventral liver lobe def: "Portion of the liver which develops on the fish's ventral side." [ZFIN:curator] synonym: "3rd lobe" EXACT [TAO:0005174] synonym: "third lobe" EXACT [TAO:0005174] xref: ZFA:0005174 is_a: UBERON:0000481 ! multi-tissue structure relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0002107 ! liver property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005175 name: obsolete CoPA def: "An interneuron in the spinal cord. CoPA are bipolar with 'T' shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-274, ZFIN:ZDB-PUB-961014-649] comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. incorrectly generalized to teleosts synonym: "primary commissural interneuron" EXACT [TAO:0005175] xref: ZFA:0005175 is_obsolete: true [Term] id: UBERON:2005176 name: obsolete CoSA def: "An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-649] comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. obsoleting because incorrectly generalized to teleosts. synonym: "secondary commissural interneuron" EXACT [TAO:0005176] xref: ZFA:0005176 is_obsolete: true [Term] id: UBERON:2005177 name: obsolete VeLD comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. incorrectly generalized to teleosts so being obsoleted. synonym: "V2b interneuron" RELATED [TAO:0005177] synonym: "ventral longitudinal interneuron" EXACT [TAO:0005177] xref: ZFA:0005177 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005178 name: obsolete DoLA comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. incorrectly generalized to teleosts so being obsoleted. synonym: "dorsal longitudinal interneuron" EXACT [TAO:0005178] xref: ZFA:0005178 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005179 name: obsolete MiP motor neuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle primary motoneuron" EXACT [TAO:0005179] xref: ZFA:0005179 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005180 name: obsolete RoP motor neuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "rostral primary motoneuron" EXACT [TAO:0005180] xref: ZFA:0005180 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005181 name: obsolete VaP motor neuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "variable primary motoneuron" EXACT [TAO:0005181] xref: ZFA:0005181 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005182 name: obsolete t-interneuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. xref: ZFA:0005182 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005183 name: obsolete MiD2i comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 ipsilateral interneuron" EXACT [TAO:0005183] xref: ZFA:0005183 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005184 name: obsolete MiD2cl comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 contralateral llf interneuron" EXACT [TAO:0005184] xref: ZFA:0005184 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005185 name: obsolete MiD2cm comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 contralateral mlf interneuron" EXACT [TAO:0005185] xref: ZFA:0005185 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005186 name: obsolete CoB def: "A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body." [ZFIN:ZDB-PUB-961014-649] comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL.\n\nThis may be the same as CoBL. incorrectly generalized to teleosts so being obsoleted. synonym: "bifurcate commissural interneuron" EXACT [TAO:0005186] xref: ZFA:0005186 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005187 name: obsolete MiM1 synonym: "middle medial interneuron" EXACT [TAO:0005187] xref: ZFA:0005187 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005188 name: obsolete MiR1 synonym: "middle rostral 1 interneuron" EXACT [TAO:0005188] xref: ZFA:0005188 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005189 name: obsolete MiR2 synonym: "middle rostral 2 interneuron" EXACT [TAO:0005189] xref: ZFA:0005189 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005190 name: obsolete MiV1 synonym: "middle ventral 1 neuron" EXACT [TAO:0005190] xref: ZFA:0005190 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005191 name: obsolete MiV2 synonym: "middle ventral 2 neuron" EXACT [TAO:0005191] xref: ZFA:0005191 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005192 name: obsolete RoI2C synonym: "rostral intermediate 2 caudal interneuron" EXACT [TAO:0005192] xref: ZFA:0005192 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005193 name: obsolete RoI2R synonym: "rostral intermediate 2 rostral interneuron" EXACT [TAO:0005193] xref: ZFA:0005193 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005194 name: obsolete RoL1 comment: May have 12 neurons in each hemi rhombomere ZDB-PUB-060217-9\n7 neurons in each hemi rhombomere 080227-17 and 931014-770 synonym: "rostral lateral 1 interneuron" EXACT [TAO:0005194] xref: ZFA:0005194 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005195 name: obsolete MiD3cl comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 contralateral llf interneuron" EXACT [TAO:0005195] xref: ZFA:0005195 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005196 name: obsolete MiD3cm comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 contralateral mlf interneuron" EXACT [TAO:0005196] xref: ZFA:0005196 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005197 name: obsolete MiD3i comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 ipsilateral interneuron" EXACT [TAO:0005197] xref: ZFA:0005197 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005198 name: obsolete RoL2 synonym: "rostral lateral 2 interneuron" EXACT [TAO:0005198] xref: ZFA:0005198 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005199 name: obsolete RoL2r synonym: "rostral lateral 2 rostral interneuron" EXACT [TAO:0005199] xref: ZFA:0005199 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005200 name: obsolete RoL2c synonym: "rostral lateral 2 caudal interneuron" EXACT [TAO:0005200] xref: ZFA:0005200 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005201 name: obsolete obsolete RoL3 synonym: "rostral lateral 3 interneuron" EXACT [TAO:0005201] xref: ZFA:0005201 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005202 name: obsolete RoM1c synonym: "rostral medial 1 caudal interneuron" EXACT [TAO:0005202] xref: ZFA:0005202 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005203 name: obsolete RoM1r synonym: "rostral medial 1 rostral interneuron" EXACT [TAO:0005203] xref: ZFA:0005203 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005204 name: obsolete rostral ventral 3 interneuron synonym: "RoV3" EXACT [TAO:0005204] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005205 name: obsolete RoM2l synonym: "rostral medial 2 lateral interneuron" EXACT [TAO:0005205] xref: ZFA:0005205 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005206 name: obsolete RoM2m synonym: "rostral medial 2 medial interneuron" EXACT [TAO:0005206] xref: ZFA:0005206 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005207 name: obsolete RoM3l synonym: "rostral medial 3 lateral interneuron" EXACT [TAO:0005207] xref: ZFA:0005207 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005208 name: obsolete RoM3m synonym: "rostral medial 3 medial interneuron" RELATED [TAO:0005208] xref: ZFA:0005208 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005209 name: obsolete hindbrain interneuron xref: ZFA:0005209 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005210 name: obsolete midbrain interneuron def: "CNS interneurons located in the midbrain." [ZFIN:Curator] xref: ZFA:0005210 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005211 name: obsolete MeL synonym: "mesencephalon lateral interneuron" EXACT [TAO:0005211] xref: ZFA:0005211 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005212 name: obsolete MeM synonym: "mesencephalon medial interneuron" EXACT [TAO:0005212] xref: ZFA:0005212 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005213 name: obsolete MeLr synonym: "mesencephalon lateral rostral interneuron" EXACT [TAO:0005213] xref: ZFA:0005213 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005214 name: obsolete MeLc synonym: "mesencephalon lateral caudal interneuron" EXACT [TAO:0005214] xref: ZFA:0005214 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005215 name: obsolete MeLm synonym: "mesencephalon lateral medial interneuron" EXACT [TAO:0005215] xref: ZFA:0005215 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005216 name: obsolete MeM1 synonym: "mesencephalon medial 1 interneuron" EXACT [TAO:0005216] xref: ZFA:0005216 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005217 name: obsolete CaV def: "Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "caudal ventral interneuron" EXACT [TAO:0005217] xref: ZFA:0005217 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005218 name: obsolete CaD synonym: "caudal dorsal interneuron" EXACT [TAO:0005218] xref: ZFA:0005218 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005219 name: choroid plexus vascular circuit def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11] synonym: "choroid vascular circuit" RELATED [TAO:0005219] synonym: "CVC" EXACT [TAO:0005219] xref: ZFA:0005219 is_a: UBERON:0008998 ! vasculature of brain relationship: part_of UBERON:0001886 ! choroid plexus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005220 name: larval melanophore stripe xref: ZFA:0005220 is_a: UBERON:2001463 ! melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005221 name: dorsal larval melanophore stripe xref: ZFA:0005221 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005222 name: ventral larval melanophore stripe xref: ZFA:0005222 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005223 name: lateral larval melanophore stripe xref: ZFA:0005223 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005224 name: yolk larval melanophore stripe xref: ZFA:0005224 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005225 name: median fin radial bone def: "Median fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "actinophore" EXACT [PSPUB:0000173] synonym: "actinoste" EXACT [PSPUB:0000163] synonym: "axonoste" EXACT [PSPUB:0000141] synonym: "ptrygiophore" EXACT [PSPUB:0000164] is_a: UBERON:2000271 ! radial bone is_a: UBERON:2105225 ! median fin radial element relationship: develops_from UBERON:2205225 ! median fin radial cartilage [Term] id: UBERON:2005226 name: median fin proximal radial bone def: "Median fin proximal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "basoste" EXACT [PSPUB:0000138] synonym: "ptrygiophore proximal" EXACT [PSPUB:0000164] is_a: UBERON:2005225 ! median fin radial bone is_a: UBERON:2105226 ! median fin proximal radial element relationship: develops_from UBERON:2205226 ! median fin proximal radial cartilage [Term] id: UBERON:2005227 name: protoneuromast synonym: "immature neuromast" RELATED [TAO:0005227] synonym: "proto neuromast" RELATED [TAO:0005227] synonym: "proto-neuromast" RELATED [TAO:0005227] xref: ZFA:0005227 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005228 name: obsolete segmented lepidotrichium def: "Lepidotrichium that is articulated or segmented, and that can be simple or branched." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "segmented ray" EXACT [TAO:0005228] synonym: "soft ray" EXACT [] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005230 name: obsolete CoBL def: "A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally." [ZFIN:ZDB-PUB-010807-17] comment: incorrectly generalized to teleosts so being obsoleted. synonym: "commissural bifurcating longitudinal" EXACT [TAO:0005230] xref: ZFA:0005230 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005231 name: obsolete bifurcate interneuron comment: Not in scope of uberon xref: ZFA:0005231 is_obsolete: true [Term] id: UBERON:2005232 name: obsolete MCoD comment: incorrectly generalized to teleosts so being obsoleted. synonym: "multipolar commissural descending interneuron" EXACT [TAO:0005232] xref: ZFA:0005232 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005233 name: obsolete CiD def: "An interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch." [ZFIN:ZDB-PUB-010807-17] comment: incorrectly generalized to teleosts synonym: "circumferential descending interneuron" EXACT [TAO:0005233] synonym: "V2a interneuron" RELATED [TAO:0005233] xref: ZFA:0005233 is_obsolete: true [Term] id: UBERON:2005234 name: obsolete CoLA def: "A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch." [ZFIN:ZDB-PUB-010807-17] comment: incorrectly generalized to teleosts synonym: "commissural longitudinal ascending interneuron" EXACT [TAO:0005234] xref: ZFA:0005234 is_obsolete: true [Term] id: UBERON:2005235 name: obsolete UCoD comment: incorrectly generalized to teleosts so being obsoleted. synonym: "unipolar commissural descending interneuron" RELATED [TAO:0005235] xref: ZFA:0005235 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005239 name: obsolete micropylar cell comment: replaced by CL_0007022 once cl is released. synonym: "plug cell" EXACT [TAO:0005239] xref: ZFA:0005239 is_obsolete: true [Term] id: UBERON:2005240 name: obsolete Kolmer-Agduhr neuron def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons." [ZFIN:ZDB-PUB-080825-21] synonym: "KA cell" EXACT [TAO:0005240] synonym: "Kolmer-Agduhr cell" EXACT [TAO:0005240] xref: ZFA:0005240 is_obsolete: true replaced_by: CL:0005007 [Term] id: UBERON:2005241 name: obsolete polychromatophilic erythroblast synonym: "intermediate erythroblast" EXACT [TAO:0005241] synonym: "intermediate normoblast" RELATED [TAO:0005241] synonym: "polychromatic erythroblast" EXACT [TAO:0005241] synonym: "polychromatic normoblast" EXACT [TAO:0005241] synonym: "polychromatophilic normoblast" RELATED [TAO:0005241] synonym: "rubricyte" EXACT [TAO:0005241] xref: ZFA:0005241 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: CL:0000550 [Term] id: UBERON:2005244 name: obsolete auditory epithelial support cell xref: ZFA:0005244 is_obsolete: true replaced_by: CL:0005014 [Term] id: UBERON:2005245 name: inter-parietal joint def: "Fibrous joint connecting the parietal bones." [ZFA:ZDB-PUB-060323-12] synonym: "sagittal suture" RELATED [TAO:0005245] xref: ZFA:0005607 is_a: UBERON:0002209 ! fibrous joint relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-02-10T04:18:40Z [Term] id: UBERON:2005246 name: obsolete regeneration fibroblast def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [ZFIN:curator] synonym: "blastemal fibroblast" EXACT [TAO:0005246] synonym: "blastemal fibroblasts" EXACT OMO:0003004 [TAO:0005246] xref: ZFA:0005246 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005247 name: obsolete CiA def: "Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord." [ZFIN:ZDB-PUB-040625-12, ZFIN:ZDB-PUB-060418-1] comment: incorrectly generalized to teleosts/vertebrates. synonym: "circumferential ascending interneuron" EXACT [TAO:0005247] xref: ZFA:0005247 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005248 name: trans-choroid plexus branch synonym: "TCB" EXACT [TAO:0005248] xref: ZFA:0005248 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel relationship: develops_from UBERON:2005027 ! posterior cerebral vein relationship: part_of UBERON:2005219 ! choroid plexus vascular circuit property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005255 name: obsolete frontal-parietal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true consider: UBERON:0016631 consider: ZFA:0005608 [Term] id: UBERON:2005256 name: intervillus pockets def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] xref: ZFA:0005256 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001277 ! intestinal epithelium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005259 name: continuous capillary def: "Capillary that has endothelial cells that provide an uninterrupted lining, and only allow small molecules, like water and ions to diffuse through tight junctions which leave gaps of unjoined membrane which are called intercellular clefts." [Wikipedia:Capillary#Types] synonym: "continuous blood vessel endothelium" BROAD [] synonym: "continuous blood vessel endothelium" EXACT [ZFA:0005259] synonym: "continuous capillary vessel" EXACT [FMA:63195] synonym: "continuous endothelium" BROAD [] xref: FMA:63195 xref: NCIT:C32370 xref: TAO:0005259 xref: UMLS:C1179614 {source="ncithesaurus:Continuous_Capillary"} xref: Wikipedia:Capillary#Types xref: ZFA:0005259 is_a: UBERON:0001982 {source="FMA"} ! capillary is_a: UBERON:0004638 {source="ZFA"} ! blood vessel endothelium property_value: external_definition "Blood vessel endothelium that has tight junctions between the endothelial cells[ZFA]." xsd:string [Term] id: UBERON:2005260 name: fenestrated capillary def: "Capillary that has pores in the endothelial cells (60-80 nm in diameter) that are spanned by a diaphragm of radially oriented fibrils and allow small molecules and limited amounts of protein to diffuse." [Wikipedia:Capillary#Types, Wikipedia:Fenestra_(histology)] synonym: "fenestrated blood vessel endothelium" BROAD [ZFA:0005260] synonym: "fenestrated capillary vessel" EXACT [FMA:63196] xref: FMA:63196 xref: NCIT:C32595 xref: TAO:0005260 xref: UMLS:C1179615 {source="ncithesaurus:Fenestrated_Capillary"} xref: Wikipedia:Capillary#Types xref: ZFA:0005260 is_a: UBERON:0001982 {source="FMA"} ! capillary is_a: UBERON:0004638 {source="ZFA"} ! blood vessel endothelium property_value: editor_note "the ZFA class from which this was derived is not explicitly classified as a capillary - need to verify for taxon histology differences" xsd:string property_value: external_definition "Blood vessel endothelium that has pores that allow passage small molecules and proteins[ZFA]." xsd:string [Term] id: UBERON:2005264 name: supraoccipital-parietal joint xref: ZFA:0005609 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005265 name: hyomandibula-opercle joint def: "Synovial joint that articulates the hyomandibula and the opercle." [ZFIN:CVS] xref: ZFA:0005626 is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T06:34:33Z [Term] id: UBERON:2005266 name: pterotic fossa def: "Fossa on the pterotic where the hyomandibula articulates." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005630 is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T06:50:18Z [Term] id: UBERON:2005267 name: erector muscle def: "Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle." [ZFIN:curator] xref: ZFA:0005267 is_a: UBERON:0001134 ! skeletal muscle tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005268 name: preopercle horizontal limb-symplectic joint def: "Joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic." [ZFIN:curator] comment: In ZFA, is a type of fibrous joint. May need to stay more general in TAO. xref: ZFA:0005631 is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:25:19Z [Term] id: UBERON:2005269 name: hypophyseal fenestra def: "Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005625 is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:33:26Z [Term] id: UBERON:2005270 name: depressor muscle def: "A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle." [ZFIN:curator] xref: ZFA:0005270 is_a: UBERON:0001134 ! skeletal muscle tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005272 name: immature gonad def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes." [ZFIN:ZDB-PUB-070305-2] synonym: "juvenile gonad" EXACT [TAO:0005272] xref: ZFA:0005272 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0005156 ! reproductive structure relationship: develops_from UBERON:0005564 ! gonad primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005273 name: intestinal mucosal muscle def: "A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold." [ZFIN:ZDB-PUB-090217-11] synonym: "intestinal lamina muscularis mucosae" RELATED [http:www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] xref: ZFA:0005273 is_a: UBERON:0004221 ! intestine smooth muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005275 name: hyomandibular foramen def: "Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII)." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005629 is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: part_of UBERON:0011608 ! hyomandibular element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:39:00Z [Term] id: UBERON:2005276 name: inclinator muscle xref: ZFA:0005276 is_a: UBERON:0001134 ! skeletal muscle tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005278 name: preopercle vertical limb-hyomandibula joint def: "Joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula." [ZFIN:curator] xref: ZFA:0005632 is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:41:34Z [Term] id: UBERON:2005279 name: enteric circular muscle def: "Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut." [ZFIN:curator] xref: ZFA:0005279 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:2001324 ! enteric musculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005292 name: distal late tubule def: "Portion of the renal tubule which is just posterior to the distal early tubule." [ZFIN:curator] xref: ZFA:0005292 is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0001231 ! nephron tubule property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005295 name: axial blood vessel xref: ZFA:0005295 is_a: UBERON:2001073 ! axial vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005303 name: caudal fin lymph vessel xref: ZFA:0005303 is_a: UBERON:0007384 ! appendage lymph vessel relationship: part_of UBERON:2005097 ! caudal fin vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005304 name: caudal fin blood vessel xref: ZFA:0005304 is_a: UBERON:0007301 ! appendage blood vessel relationship: part_of UBERON:2005097 ! caudal fin vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005311 name: pronephric glomerular capsule epithelium def: "Simple squamous epithelium that lines the capsule of the pronephric glomerulus." [ZFIN:curator] synonym: "pronephric parietal epithelial layer" EXACT [TAO:0005311] xref: ZFA:0005311 is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0004211 ! nephron epithelium relationship: part_of UBERON:0001230 ! glomerular capsule property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005316 name: fin fold pectoral fin bud def: "Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold." [ZFIN:ZDB-PUB-001101-7, ZFIN:ZDB-PUB-990210-18] synonym: "fin membrane pectoral fin bud" RELATED [TAO:0005316] synonym: "fin-fold pectoral fin bud" EXACT [TAO:0005316] xref: ZFA:0005316 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0005421 ! pectoral appendage apical ectodermal ridge relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} relationship: part_of UBERON:0005419 ! pectoral appendage bud property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005317 name: pectoral fin fold def: "The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds." [ZFIN:ZDB-PUB-990210-18] synonym: "pectoral fin-fold" EXACT [TAO:0005317] xref: ZFA:0005317 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:2005316 ! fin fold pectoral fin bud relationship: part_of UBERON:0000151 ! pectoral fin property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005319 name: intersegmental lymph vessel synonym: "islv" EXACT [TAO:0005319] xref: ZFA:0005319 is_a: UBERON:0004536 ! lymph vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005320 name: dorsal longitudinal lymphatic vessel synonym: "dllv" EXACT [TAO:0005320] xref: ZFA:0005320 is_a: UBERON:0004536 ! lymph vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005324 name: obsolete gill ionocyte def: "Ionocyte located in the gills." [ZFIN:curator] xref: ZFA:0005324 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005325 name: obsolete integument ionocyte def: "Ionocyte located in the integument during embryonic and larval stages." [ZFIN:curator] synonym: "extrabranchial ionocyte" RELATED [TAO:0005325] synonym: "skin ionocyte" EXACT [TAO:0005325] xref: ZFA:0005325 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005326 name: obsolete NaK ionocyte def: "Integument ionocyte rich in Na,K-ATPase." [ZFIN:curator] synonym: "NaK-MRC" RELATED [TAO:0005326] synonym: "NaR cell" RELATED [TAO:0005326] xref: ZFA:0005326 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005327 name: obsolete vH ionocyte def: "Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase." [ZFIN:curator] synonym: "HR cell" RELATED [TAO:0005327] synonym: "VH-MRC" RELATED [TAO:0005327] xref: ZFA:0005327 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005336 name: obsolete presumptive swim bladder xref: ZFA:0005336 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2005338 name: posterior recess def: "Posterior protrusion of the third ventricle." [ZFIN:curator] synonym: "posterior recess of diencephalic ventricle" EXACT [TAO:0005338] xref: ZFA:0005338 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002286 ! third ventricle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005339 name: nucleus of the lateral recess xref: ZFA:0005339 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005340 name: nucleus of the posterior recess xref: ZFA:0005340 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005341 name: medial longitudinal catecholaminergic tract synonym: "mlct" EXACT [TAO:0005341] xref: ZFA:0005341 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005343 name: endohypothalamic tract def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus." [ZFIN:ZDB-PUB-091221-28] xref: ZFA:0005343 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005344 name: preopticohypothalamic tract xref: ZFA:0005344 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005346 name: extrapancreatic duct def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] subset: human_reference_atlas xref: ZFA:0005346 is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0007329 ! pancreatic duct relationship: present_in_taxon NCBITaxon:9606 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005365 name: dorsal fin pterygiophore 2 xref: ZFA:0005365 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005366 name: dorsal fin pterygiophore 3 xref: ZFA:0005366 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005367 name: dorsal fin pterygiophore 4 xref: ZFA:0005367 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005368 name: dorsal fin pterygiophore 5 xref: ZFA:0005368 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005369 name: dorsal fin pterygiophore 6 xref: ZFA:0005369 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005370 name: dorsal fin pterygiophore 7 xref: ZFA:0005370 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005371 name: dorsal fin pterygiophore 8 xref: ZFA:0005371 is_a: UBERON:2001419 ! dorsal fin pterygiophore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005372 name: dorsal fin distal radial bone 1 def: "Dorsal fin distal radial 1 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005372 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105372 ! dorsal fin distal radial element 1 relationship: develops_from UBERON:2205372 ! dorsal fin distal radial cartilage 1 [Term] id: UBERON:2005373 name: dorsal fin distal radial bone 2 def: "Dorsal fin distal radial 2 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005373 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105373 ! dorsal fin distal radial element 2 relationship: develops_from UBERON:2205373 ! dorsal fin distal radial cartilage 2 [Term] id: UBERON:2005374 name: dorsal fin distal radial bone 3 def: "Dorsal fin distal radial 3 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005374 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105374 ! dorsal fin distal radial element 3 relationship: develops_from UBERON:2205374 ! dorsal fin distal radial cartilage 3 [Term] id: UBERON:2005375 name: dorsal fin distal radial bone 4 def: "Dorsal fin distal radial 4 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005375 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105375 ! dorsal fin distal radial element 4 relationship: develops_from UBERON:2205375 ! dorsal fin distal radial cartilage 4 [Term] id: UBERON:2005376 name: dorsal fin distal radial bone 5 def: "Dorsal fin distal radial 5 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005376 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105376 ! dorsal fin distal radial element 5 relationship: develops_from UBERON:2205376 ! dorsal fin distal radial cartilage 5 [Term] id: UBERON:2005377 name: dorsal fin distal radial bone 6 def: "Dorsal fin distal radial 6 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005377 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105377 ! dorsal fin distal radial element 6 relationship: develops_from UBERON:2205377 ! dorsal fin distal radial cartilage 6 [Term] id: UBERON:2005378 name: dorsal fin distal radial bone 7 def: "Dorsal fin distal radial 7 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005378 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105378 ! dorsal fin distal radial element 7 relationship: develops_from UBERON:2205378 ! dorsal fin distal radial cartilage 7 [Term] id: UBERON:2005379 name: dorsal fin distal radial bone 8 def: "Dorsal fin distal radial 8 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005379 is_a: UBERON:2000936 ! dorsal fin distal radial bone is_a: UBERON:2105379 ! dorsal fin distal radial element 8 relationship: develops_from UBERON:2205379 ! dorsal fin distal radial cartilage 8 [Term] id: UBERON:2005380 name: dorsal fin proximal radial bone 3 def: "Dorsal fin proximal radial 3 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005380 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2105380 ! dorsal fin proximal radial element 3 relationship: develops_from UBERON:2205380 ! dorsal fin proximal radial cartilage 3 [Term] id: UBERON:2005381 name: dorsal fin proximal radial bone 4 def: "Dorsal fin proximal radial 4 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005381 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2105381 ! dorsal fin proximal radial element 4 relationship: develops_from UBERON:2205381 ! dorsal fin proximal radial cartilage 4 [Term] id: UBERON:2005382 name: dorsal fin proximal radial bone 5 def: "Dorsal fin proximal radial 5 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005382 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2105382 ! dorsal fin proximal radial element 5 relationship: develops_from UBERON:2205382 ! dorsal fin proximal radial cartilage 5 [Term] id: UBERON:2005383 name: dorsal fin proximal radial bone 6 def: "Dorsal fin proximal radial 6 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005383 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2105383 ! dorsal fin proximal radial element 6 relationship: develops_from UBERON:2205383 ! dorsal fin proximal radial cartilage 6 [Term] id: UBERON:2005384 name: dorsal fin proximal radial bone 7 def: "Dorsal fin proximal radial 7 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005384 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2105384 ! dorsal fin proximal radial element 7 relationship: develops_from UBERON:2205384 ! dorsal fin proximal radial cartilage 7 [Term] id: UBERON:2005385 name: dorsal fin proximal radial bone 8 def: "Dorsal fin proximal radial 8 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] xref: ZFA:0005385 is_a: UBERON:2000947 ! dorsal fin proximal radial bone is_a: UBERON:2105385 ! dorsal fin proximal radial element 8 relationship: develops_from UBERON:2205385 ! dorsal fin proximal radial cartilage 8 [Term] id: UBERON:2005409 name: pars superior ear def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] xref: ZFA:0005409 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005410 name: pars inferior ear def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator] xref: ZFA:0005410 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005411 name: obsolete common crus comment: Obsoleted as it is redundant with 'common crus of semircular duct'. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/3161" xsd:anyURI is_obsolete: true replaced_by: UBERON:0013764 [Term] id: UBERON:2005412 name: transverse canal def: "Duct that crosses the midline connecting the sacculi." [ZFIN:curator] xref: ZFA:0005412 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005415 name: inner ear foramen def: "Foramen in the inner ear." [ZFIN:curator] xref: ZFA:0005415 is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005416 name: sacculoagenar foramen xref: ZFA:0005416 is_a: UBERON:2005415 ! inner ear foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007001 name: dorso-rostral cluster def: "Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). Ross et al., 1992." [ZFIN:curator] synonym: "dorsorostral cluster" EXACT [TAO:0007001] synonym: "drc" EXACT [TAO:0007001] xref: ZFA:0007001 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001893 ! telencephalon property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007002 name: ventro-rostral cluster def: "Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] synonym: "ventrorostral cluster" EXACT [TAO:0007002] synonym: "vrc" EXACT [TAO:0007002] xref: ZFA:0007002 is_a: UBERON:0006569 ! diencephalic nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007003 name: ventro-caudal cluster def: "Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] synonym: "vcc" EXACT [TAO:0007003] synonym: "ventrocaudal cluster" EXACT [TAO:0007003] xref: ZFA:0007003 is_a: UBERON:0001891 ! midbrain property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007004 name: epiphysial cluster def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. Ross et al., 1992." [ZFIN:curator] synonym: "ec" EXACT [TAO:0007004] xref: ZFA:0007004 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001905 ! pineal body property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007005 name: hemal prezygapophysis alt_id: UBERON:2001380 def: "Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygopophyses." [ZFIN:curator] synonym: "haemal prezygapophysis" EXACT [TAO:0007005] synonym: "hemal prezygopophysis" EXACT [TAO:0007005] xref: ZFA:0007005 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum relationship: part_of UBERON:0006065 ! hemal arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007008 name: ventral intermandibularis anterior synonym: "ventral intermandibulari anterior" EXACT OMO:0003004 [TAO:0007008] xref: ZFA:0007008 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007010 name: obsolete eminentia thalami def: "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development." [ZFIN:curator] xref: ZFA:0007010 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true [Term] id: UBERON:2007011 name: obsolete vagal root def: "Part of cranial nerve X." [ZFIN:curator] synonym: "rX" EXACT [TAO:0007011] synonym: "vagus root" EXACT [TAO:0007011] xref: ZFA:0007011 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0011213 [Term] id: UBERON:2007012 name: lateral forebrain bundle xref: ZFA:0007012 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007013 name: preplacodal ectoderm def: "Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes." [ZFIN:curator] xref: ZFA:0007013 is_a: UBERON:0005497 ! non-neural ectoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007014 name: anterior presumptive neural plate xref: ZFA:0007014 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0007284 ! presumptive neural plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007015 name: posterior presumptive neural plate xref: ZFA:0007015 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0007284 ! presumptive neural plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007023 name: posterior neural keel xref: ZFA:0007023 is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003057 ! chordal neural plate relationship: part_of UBERON:0007135 ! neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007024 name: anterior neural keel xref: ZFA:0007024 is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003056 ! pre-chordal neural plate relationship: part_of UBERON:0007135 ! neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007025 name: midbrain neural keel xref: ZFA:0007025 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0009611 ! midbrain neural plate relationship: part_of UBERON:2007024 ! anterior neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007026 name: forebrain neural keel xref: ZFA:0007026 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0009610 ! forebrain neural plate relationship: part_of UBERON:2007024 ! anterior neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007027 name: forebrain midbrain boundary neural keel xref: ZFA:0007027 is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:0009612 ! forebrain midbrain boundary neural plate relationship: part_of UBERON:2007024 ! anterior neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007028 name: spinal cord neural keel xref: ZFA:0007028 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2007023 ! posterior neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007029 name: hindbrain neural keel xref: ZFA:0007029 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0009614 ! hindbrain neural plate relationship: part_of UBERON:2007023 ! posterior neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007030 name: posterior neural rod xref: ZFA:0007030 is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007023 ! posterior neural keel relationship: part_of UBERON:0005068 ! neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007031 name: anterior neural rod xref: ZFA:0007031 is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007024 ! anterior neural keel relationship: part_of UBERON:0005068 ! neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007032 name: midbrain neural rod xref: ZFA:0007032 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007025 ! midbrain neural keel relationship: part_of UBERON:2007031 ! anterior neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007033 name: forebrain midbrain boundary neural rod xref: ZFA:0007033 is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007027 ! forebrain midbrain boundary neural keel relationship: part_of UBERON:2007031 ! anterior neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007034 name: forebrain neural rod xref: ZFA:0007034 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007026 ! forebrain neural keel relationship: part_of UBERON:2007031 ! anterior neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007035 name: spinal cord neural rod xref: ZFA:0007035 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2007030 ! posterior neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007036 name: hindbrain neural rod xref: ZFA:0007036 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007029 ! hindbrain neural keel relationship: part_of UBERON:2007030 ! posterior neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007040 name: forebrain midbrain boundary neural tube xref: ZFA:0007040 is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007033 ! forebrain midbrain boundary neural rod relationship: part_of UBERON:0003080 ! anterior neural tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007041 name: forebrain neural tube xref: ZFA:0007041 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007034 ! forebrain neural rod relationship: part_of UBERON:0003080 ! anterior neural tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007042 name: spinal cord neural tube xref: ZFA:0007042 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003076 ! posterior neural tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007043 name: hindbrain neural tube xref: ZFA:0007043 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007036 ! hindbrain neural rod relationship: part_of UBERON:0003076 ! posterior neural tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007045 name: midbrain hindbrain boundary neural keel xref: ZFA:0007045 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:0009615 ! midbrain hindbrain boundary neural plate relationship: part_of UBERON:0007135 ! neural keel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007046 name: midbrain hindbrain boundary neural rod xref: ZFA:0007046 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007045 ! midbrain hindbrain boundary neural keel relationship: part_of UBERON:0005068 ! neural rod property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007047 name: midbrain hindbrain boundary neural tube xref: ZFA:0007047 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007046 ! midbrain hindbrain boundary neural rod relationship: part_of UBERON:0001049 ! neural tube property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007048 name: ventral intermandibularis posterior synonym: "ventral intermandibulari posterior" EXACT OMO:0003004 [TAO:0007048] xref: ZFA:0007048 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007050 name: constrictor dorsalis xref: ZFA:0007050 is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007051 name: ventral interhyoideus synonym: "ventral interhyoidei" EXACT OMO:0003004 [TAO:0007051] xref: ZFA:0007051 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007052 name: hyohyoideus def: "Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure." [ZFIN:ZDB-PUB-020703-2] synonym: "hyohyoidei" EXACT OMO:0003004 [TAO:0007052] xref: ZFA:0007052 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007053 name: dorsal adductor hyomandibulae def: "Is a hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics." [ZFIN:ZDB-PUB-020703-2] xref: ZFA:0007053 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007054 name: pillar of the anterior semicircular canal synonym: "anterior hub of the semicircular canal" EXACT [TAO:0007054] synonym: "anterior pillar" EXACT [TAO:0007054] synonym: "anterior pillar of the semicircular canal" EXACT [TAO:0007054] synonym: "horizontal hub" RELATED [TAO:0007054] xref: ZFA:0007054 is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: develops_from UBERON:2000232 ! lateral semicircular canal primordium relationship: develops_from UBERON:2000469 ! anterior semicircular canal primordium relationship: part_of UBERON:0001841 ! anterior semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007055 name: pillar of the lateral semicircular canal synonym: "lateral hub of the semicircular canal" EXACT [TAO:0007055] synonym: "ventral bar" EXACT [TAO:0007055] synonym: "ventral pillar" EXACT [TAO:0007055] synonym: "ventral piller of the semicircular canal" EXACT [TAO:0007055] xref: ZFA:0007055 is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: develops_from UBERON:2001716 ! caudal principal ray 4 relationship: part_of UBERON:0001843 ! lateral semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007059 name: neurogenic field xref: ZFA:0007059 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:2007013 ! preplacodal ectoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007060 name: dorsolateral field xref: ZFA:0007060 is_a: UBERON:2007059 ! neurogenic field property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007061 name: epibranchial field xref: ZFA:0007061 is_a: UBERON:2007059 ! neurogenic field property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007062 name: olfactory field synonym: "olfactory fields" EXACT OMO:0003004 [TAO:0007062] xref: ZFA:0007062 is_a: UBERON:2007059 ! neurogenic field property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007067 name: obsolete vagal ganglion synonym: "gX" EXACT [TAO:0007067] xref: ZFA:0007067 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true replaced_by: UBERON:0005362 [Term] id: UBERON:2100268 name: anal fin proximal radial element def: "Rod-like internal median skeletal support elememts of the anal fin, which articulate with the distal radial elements." [ZFIN:curator] synonym: "basal radial of anal fin" RELATED [TAO:0000268] synonym: "proximal anal-fin radial" RELATED [TAO:0000268] is_a: UBERON:2101671 ! anal fin radial element relationship: part_of UBERON:2001420 ! anal fin pterygiophore [Term] id: UBERON:2100271 name: radial element def: "Radial elements are the internal skeletal supports of the median and paired fins." [TAO:wd] comment: Radial elements may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. synonym: "actinost" RELATED [TAO:0000271] synonym: "radials" RELATED OMO:0003004 [TAO:0000271] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:4440008 ! fin radial skeleton [Term] id: UBERON:2100508 name: pelvic fin radial element def: "Pelvic fin radial elements are internal skeletal supports of the pelvic fin." [TAO:wd] synonym: "pelvic actinost" RELATED [TAO:0000508] synonym: "pelvic radial" RELATED [TAO:0000508] is_a: UBERON:1600006 ! paired fin radial element relationship: part_of UBERON:4440010 ! pelvic fin radial skeleton [Term] id: UBERON:2100623 name: basipterygium element def: "Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:wd] synonym: "basipterygia" RELATED OMO:0003004 [TAO:0000623] synonym: "basipterygium" RELATED [] synonym: "basiptrygium ischiatique" RELATED [PSPUB:0000145] synonym: "os pelvien" RELATED [PSPUB:0000164] synonym: "pelvic bone" RELATED [TAO:0000623] synonym: "pelvic plate" RELATED [] synonym: "pubic plate" RELATED [] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:2100646 name: anal fin distal radial element def: "Rod-like internal median skeletal support elements of the anal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] synonym: "distal anal fin radial" RELATED [TAO:0000646] is_a: UBERON:2101671 ! anal fin radial element relationship: part_of UBERON:2001420 ! anal fin pterygiophore [Term] id: UBERON:2100936 name: dorsal fin distal radial element def: "Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] is_a: UBERON:2101672 ! dorsal fin radial element relationship: part_of UBERON:2001419 ! dorsal fin pterygiophore [Term] id: UBERON:2100947 name: dorsal fin proximal radial element def: "Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the distal radial elements." [ZFIN:curator] synonym: "basal radial of dorsal fin" RELATED [TAO:0000947] is_a: UBERON:2101672 ! dorsal fin radial element relationship: part_of UBERON:2001419 ! dorsal fin pterygiophore [Term] id: UBERON:2101415 name: pelvic fin distal radial element 2 is_a: UBERON:1600008 ! pelvic fin distal radial element [Term] id: UBERON:2101416 name: pelvic fin distal radial element 3 is_a: UBERON:1600008 ! pelvic fin distal radial element [Term] id: UBERON:2101417 name: pelvic fin distal radial element 1 is_a: UBERON:1600008 ! pelvic fin distal radial element [Term] id: UBERON:2101586 name: pectoral fin radial element def: "Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:GA_TG] comment: There are two paired series of pectoral radial elements, the proximal and the distal ones that may have variable shapes and sizes. synonym: "pectoral actinost" RELATED [TAO:0001586] is_a: UBERON:1600006 ! paired fin radial element relationship: develops_from UBERON:2001456 ! pectoral fin endoskeletal disc relationship: part_of UBERON:4440009 ! pectoral fin radial skeleton [Term] id: UBERON:2101587 name: pectoral fin proximal radial element def: "Pectoral fin radial element which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radial elements with the primary pectoral girdle (scapula and coracoid)." [TAO:GA_TG] comment: Two to four flat or slightly rod-like proximal pectoral radial elements, bilaterally, can be found in teleosts. Pectoral proximal radial elements are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radial elements is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). is_a: UBERON:2101586 ! pectoral fin radial element [Term] id: UBERON:2101588 name: pectoral fin distal radial element def: "Pectoral fin radial element that sometimes ossifies, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial element is paired." [TAO:GA_TG] comment: A variable number of pectoral distal radial elements may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. is_a: UBERON:2101586 ! pectoral fin radial element [Term] id: UBERON:2101613 name: dorsal fin middle radial element def: "Dorsal fin radial element that is the rod-like internal median skeletal support element of the dorsal fin located between the dorsal fin proximal radial element and dorsal fin distal radial element." [TAO:wd] comment: Synonym dorsal fin medial radial from Weitzman, 1962. synonym: "dorsal fin medial radial" RELATED [TAO:0001613] is_a: UBERON:2101672 ! dorsal fin radial element relationship: part_of UBERON:2001419 ! dorsal fin pterygiophore [Term] id: UBERON:2101614 name: anal fin middle radial element def: "Anal fin radial element that is the rod-like internal median skeletal support element of the anal fin located between the anal fin proximal radial element and anal fin distal radial element." [TAO:wd] comment: Synonym anal fin medial radial from Weitzman, 1962. synonym: "anal fin medial radial" RELATED [TAO:0001614] synonym: "medial anal-fin radial" RELATED [TAO:0001614] is_a: UBERON:2101671 ! anal fin radial element relationship: part_of UBERON:2001420 ! anal fin pterygiophore [Term] id: UBERON:2101671 name: anal fin radial element def: "Anal fin radial elements are internal skeletal supports of the anal fin." [TAO:wd] is_a: UBERON:2105225 ! median fin radial element relationship: part_of UBERON:4000166 ! anal fin skeleton [Term] id: UBERON:2101672 name: dorsal fin radial element def: "Dorsal fin radial elements are internal skeletal supports of the dorsal fin." [TAO:wd] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:2105225 ! median fin radial element relationship: part_of UBERON:4000168 ! dorsal fin skeleton [Term] id: UBERON:2101818 name: dorsal fin proximal radial element 1 is_a: UBERON:2100947 ! dorsal fin proximal radial element [Term] id: UBERON:2101819 name: dorsal fin proximal radial element 2 is_a: UBERON:2100947 ! dorsal fin proximal radial element [Term] id: UBERON:2102026 name: pectoral fin proximal radial element 1 def: "Pectoral fin proximal radial element that is the most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] synonym: "first pectoral basal radial" RELATED [TAO:0002026] synonym: "pectoral actinost 1" RELATED [] is_a: UBERON:2101587 ! pectoral fin proximal radial element [Term] id: UBERON:2102027 name: pectoral fin proximal radial element 2 def: "Pectoral fin proximal radial element that is the second most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] synonym: "pectoral actinost 2" RELATED [] synonym: "second pectoral basal radial" RELATED [TAO:0002027] is_a: UBERON:2101587 ! pectoral fin proximal radial element [Term] id: UBERON:2102028 name: pectoral fin proximal radial element 3 def: "Pectoral fin proximal radial element that is the third most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] synonym: "pectoral actinost 3" RELATED [] synonym: "third pectoral basal radial" RELATED [TAO:0002028] is_a: UBERON:2101587 ! pectoral fin proximal radial element [Term] id: UBERON:2102029 name: pectoral fin proximal radial element 4 def: "Pectoral fin proximal radial element that is the fourth most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] synonym: "fourth pectoral basal radial" RELATED [TAO:0002029] synonym: "pectoral actinost 4" RELATED [] is_a: UBERON:2101587 ! pectoral fin proximal radial element [Term] id: UBERON:2102277 name: pectoral fin distal radial element 1 is_a: UBERON:2101588 ! pectoral fin distal radial element [Term] id: UBERON:2102279 name: pectoral fin distal radial element 2 is_a: UBERON:2101588 ! pectoral fin distal radial element [Term] id: UBERON:2102280 name: pectoral fin distal radial element 3 is_a: UBERON:2101588 ! pectoral fin distal radial element [Term] id: UBERON:2105225 name: median fin radial element def: "Radial element that is part of a median fin." [TAO:curator] synonym: "actinophore" RELATED [PSPUB:0000173] synonym: "actinoste" RELATED [PSPUB:0000163] synonym: "axonoste" RELATED [PSPUB:0000141] synonym: "ptrygiophore" RELATED [PSPUB:0000164] is_a: UBERON:2100271 ! radial element relationship: part_of UBERON:4000162 ! median fin [Term] id: UBERON:2105226 name: median fin proximal radial element synonym: "basoste" RELATED [PSPUB:0000138] synonym: "ptrygiophore proximal" RELATED [PSPUB:0000164] is_a: UBERON:2105225 ! median fin radial element [Term] id: UBERON:2105372 name: dorsal fin distal radial element 1 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2002094 ! dorsal fin pterygiophore 1 [Term] id: UBERON:2105373 name: dorsal fin distal radial element 2 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2005365 ! dorsal fin pterygiophore 2 [Term] id: UBERON:2105374 name: dorsal fin distal radial element 3 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2005366 ! dorsal fin pterygiophore 3 [Term] id: UBERON:2105375 name: dorsal fin distal radial element 4 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2005367 ! dorsal fin pterygiophore 4 [Term] id: UBERON:2105376 name: dorsal fin distal radial element 5 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2005368 ! dorsal fin pterygiophore 5 [Term] id: UBERON:2105377 name: dorsal fin distal radial element 6 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2005369 ! dorsal fin pterygiophore 6 [Term] id: UBERON:2105378 name: dorsal fin distal radial element 7 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2005370 ! dorsal fin pterygiophore 7 [Term] id: UBERON:2105379 name: dorsal fin distal radial element 8 is_a: UBERON:2100936 ! dorsal fin distal radial element relationship: part_of UBERON:2005371 ! dorsal fin pterygiophore 8 [Term] id: UBERON:2105380 name: dorsal fin proximal radial element 3 is_a: UBERON:2100947 ! dorsal fin proximal radial element relationship: part_of UBERON:2005366 ! dorsal fin pterygiophore 3 [Term] id: UBERON:2105381 name: dorsal fin proximal radial element 4 is_a: UBERON:2100947 ! dorsal fin proximal radial element relationship: part_of UBERON:2005367 ! dorsal fin pterygiophore 4 [Term] id: UBERON:2105382 name: dorsal fin proximal radial element 5 is_a: UBERON:2100947 ! dorsal fin proximal radial element relationship: part_of UBERON:2005368 ! dorsal fin pterygiophore 5 [Term] id: UBERON:2105383 name: dorsal fin proximal radial element 6 is_a: UBERON:2100947 ! dorsal fin proximal radial element relationship: part_of UBERON:2005369 ! dorsal fin pterygiophore 6 [Term] id: UBERON:2105384 name: dorsal fin proximal radial element 7 is_a: UBERON:2100947 ! dorsal fin proximal radial element relationship: part_of UBERON:2005370 ! dorsal fin pterygiophore 7 [Term] id: UBERON:2105385 name: dorsal fin proximal radial element 8 is_a: UBERON:2100947 ! dorsal fin proximal radial element relationship: part_of UBERON:2005371 ! dorsal fin pterygiophore 8 [Term] id: UBERON:2200268 name: anal fin proximal radial cartilage def: "Anal fin proximal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "basal radial of anal fin cartilage" EXACT [TAO:0000268] synonym: "proximal anal-fin radial cartilage" EXACT [TAO:0000268] is_a: UBERON:2100268 ! anal fin proximal radial element is_a: UBERON:2201671 ! anal fin radial cartilage [Term] id: UBERON:2200271 name: radial cartilage def: "Radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] comment: Radials may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. synonym: "actinost" RELATED [TAO:0000271] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:2100271 ! radial element [Term] id: UBERON:2200508 name: obsolete pelvic fin radial cartilage def: "Pelvic fin radial element that is composed of cartilage tissue." [OBOL:automatic] synonym: "pelvic actinost" EXACT [TAO:0000508] synonym: "pelvic radial" EXACT [TAO:0000508] is_obsolete: true [Term] id: UBERON:2200623 name: obsolete basipterygium cartilage def: "Basipterygium element that is composed of cartilage tissue." [OBOL:automatic] synonym: "basipterygia" EXACT OMO:0003004 [TAO:0000623] synonym: "basiptrygium ischiatique" EXACT [PSPUB:0000145] synonym: "os pelvien" EXACT [PSPUB:0000164] synonym: "pelvic cartilage" RELATED [TAO:0000623] synonym: "pelvic plate" EXACT [] synonym: "pubic plate" EXACT [] is_obsolete: true [Term] id: UBERON:2200646 name: anal fin distal radial cartilage def: "Anal fin distal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2100646 ! anal fin distal radial element is_a: UBERON:2201671 ! anal fin radial cartilage [Term] id: UBERON:2200936 name: dorsal fin distal radial cartilage def: "Dorsal fin distal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2100936 ! dorsal fin distal radial element is_a: UBERON:2201672 ! dorsal fin radial cartilage [Term] id: UBERON:2200947 name: dorsal fin proximal radial cartilage def: "Dorsal fin proximal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "basal radial cartilage of dorsal fin" EXACT [TAO:0000947] is_a: UBERON:2100947 ! dorsal fin proximal radial element is_a: UBERON:2201672 ! dorsal fin radial cartilage [Term] id: UBERON:2201415 name: pelvic fin distal radial cartilage 2 def: "Pelvic fin distal radial 2 element that is composed of cartilage tissue." [OBOL:automatic] is_a: UBERON:1700006 ! paired fin radial cartilage is_a: UBERON:2101415 ! pelvic fin distal radial element 2 [Term] id: UBERON:2201416 name: pelvic fin distal radial cartilage 3 def: "Pelvic fin distal radial 3 element that is composed of cartilage tissue." [OBOL:automatic] is_a: UBERON:1700006 ! paired fin radial cartilage is_a: UBERON:2101416 ! pelvic fin distal radial element 3 [Term] id: UBERON:2201417 name: pelvic fin distal radial cartilage 1 def: "Pelvic fin distal radial 1 element that is composed of cartilage tissue." [OBOL:automatic] is_a: UBERON:1700006 ! paired fin radial cartilage is_a: UBERON:2101417 ! pelvic fin distal radial element 1 [Term] id: UBERON:2201586 name: pectoral fin radial cartilage def: "Pectoral fin radial element that is composed of cartilage tissue." [OBOL:automatic] comment: There are two paired series of pectoral radials, the proximal and the distal ones that may have variable shapes and sizes. is_a: UBERON:1700006 ! paired fin radial cartilage is_a: UBERON:2101586 ! pectoral fin radial element [Term] id: UBERON:2201587 name: pectoral fin proximal radial cartilage def: "Pectoral fin proximal radial element that is composed of cartilage tissue." [OBOL:automatic] comment: Two to four flat or slightly rod-like proximal pectoral radials, bilaterally, can be found in teleosts. Pectoral proximal radials are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radials is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). is_a: UBERON:2101587 ! pectoral fin proximal radial element is_a: UBERON:2201586 ! pectoral fin radial cartilage [Term] id: UBERON:2201588 name: pectoral fin distal radial cartilage def: "Pectoral fin distal radial element that is composed of cartilage tissue." [OBOL:automatic] comment: A variable number of pectoral distal radials may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. is_a: UBERON:2101588 ! pectoral fin distal radial element is_a: UBERON:2201586 ! pectoral fin radial cartilage [Term] id: UBERON:2201613 name: dorsal fin middle radial cartilage def: "Dorsal fin middle radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] comment: Synonym dorsal fin medial radial from Weitzman, 1962. synonym: "dorsal fin medial radial cartilage" EXACT [TAO:0001613] is_a: UBERON:2101613 ! dorsal fin middle radial element is_a: UBERON:2201672 ! dorsal fin radial cartilage [Term] id: UBERON:2201614 name: anal fin middle radial cartilage def: "Anal fin middle radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] comment: Synonym anal fin medial radial from Weitzman, 1962. synonym: "anal fin medial radial cartilage" EXACT [TAO:0001614] synonym: "medial anal-fin radial cartilage" EXACT [TAO:0001614] is_a: UBERON:2101614 ! anal fin middle radial element is_a: UBERON:2201671 ! anal fin radial cartilage [Term] id: UBERON:2201671 name: anal fin radial cartilage def: "Anal fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2101671 ! anal fin radial element is_a: UBERON:2205225 ! median fin radial cartilage [Term] id: UBERON:2201672 name: dorsal fin radial cartilage def: "Dorsal fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2101672 ! dorsal fin radial element is_a: UBERON:2205225 ! median fin radial cartilage [Term] id: UBERON:2201818 name: dorsal fin proximal radial cartilage 1 def: "Dorsal fin proximal radial 1 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2101818 ! dorsal fin proximal radial element 1 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2201819 name: dorsal fin proximal radial cartilage 2 def: "Dorsal fin proximal radial 2 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2101819 ! dorsal fin proximal radial element 2 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2202026 name: pectoral fin proximal radial cartilage 1 def: "Pectoral fin proximal radial 1 element that is composed of cartilage tissue." [OBOL:automatic] synonym: "first pectoral basal radial cartilage" EXACT [TAO:0002026] is_a: UBERON:2102026 ! pectoral fin proximal radial element 1 is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage [Term] id: UBERON:2202027 name: pectoral fin proximal radial cartilage 2 def: "Pectoral fin proximal radial 2 element that is composed of cartilage tissue." [OBOL:automatic] synonym: "second pectoral basal radial cartilage" EXACT [TAO:0002027] is_a: UBERON:2102027 ! pectoral fin proximal radial element 2 is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage [Term] id: UBERON:2202028 name: pectoral fin proximal radial cartilage 3 def: "Pectoral fin proximal radial 3 element that is composed of cartilage tissue." [OBOL:automatic] synonym: "third pectoral basal radial cartilage" EXACT [TAO:0002028] is_a: UBERON:2102028 ! pectoral fin proximal radial element 3 is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage [Term] id: UBERON:2202029 name: pectoral fin proximal radial cartilage 4 def: "Pectoral fin proximal radial 4 element that is composed of cartilage tissue." [OBOL:automatic] synonym: "fourth pectoral basal radial cartilage" EXACT [TAO:0002029] is_a: UBERON:2102029 ! pectoral fin proximal radial element 4 is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage [Term] id: UBERON:2202277 name: pectoral fin distal radial cartilage 1 def: "Pectoral fin distal radial 1 element that is composed of cartilage tissue." [OBOL:automatic] is_a: UBERON:2102277 ! pectoral fin distal radial element 1 is_a: UBERON:2201588 ! pectoral fin distal radial cartilage [Term] id: UBERON:2202279 name: pectoral fin distal radial cartilage 2 def: "Pectoral fin distal radial 2 element that is composed of cartilage tissue." [OBOL:automatic] is_a: UBERON:2102279 ! pectoral fin distal radial element 2 is_a: UBERON:2201588 ! pectoral fin distal radial cartilage [Term] id: UBERON:2202280 name: pectoral fin distal radial cartilage 3 def: "Pectoral fin distal radial 3 element that is composed of cartilage tissue." [OBOL:automatic] is_a: UBERON:2102280 ! pectoral fin distal radial element 3 is_a: UBERON:2201588 ! pectoral fin distal radial cartilage [Term] id: UBERON:2205225 name: median fin radial cartilage def: "Median fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105225 ! median fin radial element is_a: UBERON:2200271 ! radial cartilage [Term] id: UBERON:2205226 name: median fin proximal radial cartilage def: "Median fin proximal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] synonym: "ptrygiophore proximal cartilage" EXACT [PSPUB:0000164] is_a: UBERON:2105226 ! median fin proximal radial element is_a: UBERON:2205225 ! median fin radial cartilage [Term] id: UBERON:2205372 name: dorsal fin distal radial cartilage 1 def: "Dorsal fin distal radial 1 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105372 ! dorsal fin distal radial element 1 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205373 name: dorsal fin distal radial cartilage 2 def: "Dorsal fin distal radial 2 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105373 ! dorsal fin distal radial element 2 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205374 name: dorsal fin distal radial cartilage 3 def: "Dorsal fin distal radial 3 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105374 ! dorsal fin distal radial element 3 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205375 name: dorsal fin distal radial cartilage 4 def: "Dorsal fin distal radial 4 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105375 ! dorsal fin distal radial element 4 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205376 name: dorsal fin distal radial cartilage 5 def: "Dorsal fin distal radial 5 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105376 ! dorsal fin distal radial element 5 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205377 name: dorsal fin distal radial cartilage 6 def: "Dorsal fin distal radial 6 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105377 ! dorsal fin distal radial element 6 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205378 name: dorsal fin distal radial cartilage 7 def: "Dorsal fin distal radial 7 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105378 ! dorsal fin distal radial element 7 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205379 name: dorsal fin distal radial cartilage 8 def: "Dorsal fin distal radial 8 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105379 ! dorsal fin distal radial element 8 is_a: UBERON:2200936 ! dorsal fin distal radial cartilage [Term] id: UBERON:2205380 name: dorsal fin proximal radial cartilage 3 def: "Dorsal fin proximal radial 3 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105380 ! dorsal fin proximal radial element 3 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2205381 name: dorsal fin proximal radial cartilage 4 def: "Dorsal fin proximal radial 4 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105381 ! dorsal fin proximal radial element 4 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2205382 name: dorsal fin proximal radial cartilage 5 def: "Dorsal fin proximal radial 5 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105382 ! dorsal fin proximal radial element 5 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2205383 name: dorsal fin proximal radial cartilage 6 def: "Dorsal fin proximal radial 6 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105383 ! dorsal fin proximal radial element 6 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2205384 name: dorsal fin proximal radial cartilage 7 def: "Dorsal fin proximal radial 7 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105384 ! dorsal fin proximal radial element 7 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:2205385 name: dorsal fin proximal radial cartilage 8 def: "Dorsal fin proximal radial 8 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] is_a: UBERON:2105385 ! dorsal fin proximal radial element 8 is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage [Term] id: UBERON:3000002 name: alary cartilage def: "Paired, cup-shaped cartilage that are dorsal to the septomaxillae and anterior to the oblique cartilage. The anterior, convex face of each alary cartilage is synchondrotically fused to the superior prenasal cartilage and the ventral edge is fused to the superior margin of the crista intermedia." [AAO:LAP] synonym: "alinasal cartilage" RELATED [UBERON:3000002] synonym: "cartilago alaris" RELATED [UBERON:3000002] synonym: "cartilago alaris nasi" RELATED [UBERON:3000002] synonym: "cartilago cupullaris" RELATED [UBERON:3000002] synonym: "copula anterior" RELATED [UBERON:3000002] synonym: "naseflngelknorpel" RELATED [UBERON:3000002] synonym: "processus alaris" RELATED [UBERON:3000002] synonym: "second upper labial" RELATED [UBERON:3000002] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000003 name: alary process of premaxilla def: "Dorsal process that extends toward the nasal bone. The posterior (inner) face of each alary process is concave and is invested dorsomedially by the superior prenasal cartilage and ventromedially by the inferior prenasal cartilage." [AAO:LAP] synonym: "dorsal process of premaxilla" RELATED [UBERON:3000003] synonym: "pars dorsalis of premaxilla" RELATED [UBERON:3000003] synonym: "pars facialis of premaxilla" RELATED [UBERON:3000003] synonym: "pars frontalis of premaxilla" RELATED [UBERON:3000003] synonym: "pars prenasalis of premaxilla" RELATED [UBERON:3000003] synonym: "premaxillary spine" RELATED [UBERON:3000003] synonym: "processus ascendens of premaxilla" RELATED [UBERON:3000003] synonym: "processus frontalis of premaxilla" RELATED [UBERON:3000003] synonym: "processus nasalis of premaxilla" RELATED [UBERON:3000003] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000006 name: alveolar foramen def: "Foramen for the R. alveolaris of Nerve VII and the alveolar artery." [AAO:LAP] synonym: "inferior dental foramen" RELATED [UBERON:3000006] is_a: UBERON:0011772 ! lower jaw opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000012 name: angulosplenial coronoid process def: "Point of insertion of the adductor mandibulae musculature." [AAO:LAP] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000966 ! angulosplenial property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000015 name: anterior maxillary process def: "Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla." [AAO:LAP] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000016 name: anterior nasal wall def: "Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule." [AAO:LAP] synonym: "prenasal wall" RELATED [UBERON:3000016] synonym: "solum anterius" RELATED [UBERON:3000016] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000017 name: anterior process of pars palatina of maxilla is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0004527 ! alveolar process of maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000018 name: anterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends anteriorly towards the maxilla." [AAO:LAP] synonym: "ramus maxillaris of pterygoid" RELATED [UBERON:3000018] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0010389 ! pterygoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000020 name: anterolateral process of frontoparietal is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0011639 ! frontoparietal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000022 name: antorbital process is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000400 ! pars facialis of maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000031 name: ascending process of palatoquadrate synonym: "apophyse ascendens" RELATED [UBERON:3000031] synonym: "cartilage craniofacial" RELATED [UBERON:3000031] synonym: "oberste abteilung des zweiten visceralbogens" RELATED [UBERON:3000031] synonym: "pedicle" RELATED [UBERON:3000031] synonym: "pediculus" RELATED [UBERON:3000031] synonym: "processus ascendens of palatoquadrate" RELATED [UBERON:3000031] synonym: "schlafenflugelknorpel" RELATED [UBERON:3000031] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000032 name: auditory muscles is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000036 name: basal process of palatoquadrate def: "Process that extends medially from the ventromedial corner of the palatoquadrate cartilage and articulates or fuses to the anterior wall of the otic capsule via the basitrabecular process." [AAO:LAP] synonym: "processus basalis" RELATED [UBERON:3000036] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000037 name: basicranial fenestra def: "Ventral opening of the neurocranium." [AAO:LAP] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000038 name: basimandibulare is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003278 ! skeleton of lower jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000041 name: Bidder's organ def: "Anatomical structure which forms from an enlargement of the anterior portion of each gonad in all male bufonid larvae and consists of ovarian tissues." [AAO:BJB] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0005156 ! reproductive structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000044 name: obsolete blastomere alt_id: UBERON:3010282 def: "Undifferentiated cell that is produced by early cleavages of the fertilized egg (zygote)." [AAO:BJB] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:2000093 [Term] id: UBERON:3000050 name: braincase and auditory apparatus def: "The part of the skull that encloses the brain and surrounds the inner ear." [AAO:LAP] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0010323 ! cranial skeletal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000051 name: braincase and otic capsule opening is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:3000050 ! braincase and auditory apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000052 name: braincase and otic capsule skeleton is_a: UBERON:3000050 ! braincase and auditory apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000057 name: canalis semicircularis anterior is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000059 name: capsular process def: "Narrow process of the skeletal support that projects forward." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3000565 ! skeletal support for eminentia olfactoria property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000061 name: obsolete cartilage bridge of nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:3000381 [Term] id: UBERON:3000065 name: obsolete forelimb opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000068 name: cartilago ectochoanalis def: "Lateral cartilaginous border of the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000069 name: cartilago infranarina is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000074 name: cartilago orbitalis def: "Lateral wall of chondrocranial braincase between lamina orbitonasalis and pila metoptica." [AAO:LT] synonym: "dorsale randspange" RELATED [UBERON:3000074] is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000078 name: cartilago prootico-occipitalis is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000079 name: cartilago retronarina is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000085 name: cavum inferius def: "Accessory cavity located ventral to the cavum principale and cavum medius." [AAO:LAP] is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000086 name: cavum internasale is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000087 name: cavum medius def: "Small accessory cavity located between the cavum principale and cavum inferius." [AAO:LAP] is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000088 name: cavum praenasale is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000089 name: cavum principale def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:LAP] {comment="AAO:EJS"} is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000099 name: obsolete connective tissue proper is_obsolete: true consider: UBERON:0002384 [Term] id: UBERON:3000101 name: hyale def: "Anterior-lateral projections from the corpus of the hyoid apparatus." [PHENOSCAPE] comment: Found in Anura (frogs) only. synonym: "anterior cornua" EXACT [] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000110 name: crista contacta def: "Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000111 name: crista dentalis of maxilla is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004527 ! alveolar process of maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000112 name: crista dentalis of premaxilla synonym: "dental ridge of premaxilla" RELATED [UBERON:3000112] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0034898 ! alveolar ridge of premaxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000113 name: crista intermedia def: "Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000115 name: crista lateralis of premaxilla is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000117 name: crista subnasalis def: "Ventral crest of the paries nasi." [AAO:LAP] synonym: "subnasal crest" RELATED [UBERON:3000117] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000118 name: crista supraorbitalis def: "Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000121 name: obsolete dense connective tissue def: "Also known as fibrous connective tissue. Forms ligaments and tendons and is characterized by densely packed collagen fibers that have great tensile strength." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0011823 [Term] id: UBERON:3000131 name: dilatatio alaris def: "Flange that extends ventrally from about the middle portion of the margo mandibularis." [AAO:LAP] synonym: "ventral flange of anterior ramus of pterygoid" RELATED [UBERON:3000131] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000280 ! margo mandibularis of pterygoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000132 name: obsolete dorsal plate comment: Term describes shape of tectum nasi property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000141 name: endolymphatic system is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000155 name: extremitas anterior def: "Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior." [AAO:LAP] synonym: "anterior ramus" RELATED [UBERON:3000155] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011167 ! septomaxilla bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000160 name: fenestra dorsalis nasi is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000161 name: fenestra endochoanalis def: "Opening on the ventral aspect of the nasal capsule. It contains the apertura nasalis interna." [AAO:LAP] synonym: "fenestra exochoanalis" RELATED [UBERON:3000161] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000162 name: fenestra endonarina communis def: "Opening on the anterolateral aspect of the nasal capsule. It contains the apertura nasalis externa." [AAO:LAP] synonym: "apertura nasalis externa" RELATED [UBERON:3000162] synonym: "fenestra narina" RELATED [UBERON:3000162] synonym: "narial fenestra" RELATED [UBERON:3000162] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000164 name: fenestra lateralis nasi def: "Opening on the lateral side of the nasal capsule." [AAO:LAP] synonym: "fenestra infraconchalis" RELATED [UBERON:3000164] synonym: "fenestra retronarina" RELATED [UBERON:3000164] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000166 name: fenestra nasobasalis def: "Small opening at the anterior tip of the nasal capsule, on the floor of the cavum inferius. It is located medially to the base of the inferior prenasal cartilage and serves for the passage of the ramus medialis narium and arteria orbitonasalis." [AAO:LAP] synonym: "basal fenestra" RELATED [UBERON:3000166] synonym: "fenestra basalis nasi" RELATED [UBERON:3000166] synonym: "foramen apicale" RELATED [UBERON:3000166] synonym: "foramen epiphaniale" RELATED [UBERON:3000166] synonym: "nasobasal fenestra" RELATED [UBERON:3000166] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000167 name: fenestra nasolateralis def: "Elongated opening located on the lateral side of the nasal capsule." [AAO:LAP] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000170 name: fenestra precerebralis is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000171 name: fenestra prechoanalis def: "Large opening of the nasal floor anterior to the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000177 name: flange of quadratojugal is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011267 ! quadratojugal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000178 name: footplate of pars media plectri def: "Independent, horizontal bar of cartilage located on the anterior part of the fenestra ovalis in front of the pars interna plectri." [AAO:LAP] synonym: "fenestral plate" RELATED [UBERON:3000178] synonym: "interstapediale" RELATED [UBERON:3000178] synonym: "otostapes" RELATED [UBERON:3000178] synonym: "pars otica columellae" RELATED [UBERON:3000178] synonym: "pseudooperculum" RELATED [UBERON:3000178] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000408 ! pars media plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000179 name: foramen acusticum synonym: "acoustic foramen" RELATED [UBERON:3000179] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000180 name: foramen acusticum anterius is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000179 ! foramen acusticum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000181 name: foramen acusticum maius is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000180 ! foramen acusticum anterius property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000182 name: foramen acusticum minus is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000180 ! foramen acusticum anterius property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000183 name: foramen acusticum posterius is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000179 ! foramen acusticum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000185 name: foramen endolymphaticum synonym: "endolymphatic foramen" RELATED [UBERON:3000185] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000189 name: foramen orbitonasale laterale is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000190 name: foramen orbitonasale mediale synonym: "canalis orbitonasalis" RELATED [UBERON:3000190] synonym: "canalis orbitonasalis medialis" RELATED [UBERON:3000190] synonym: "foramen orbitonasale" RELATED [UBERON:3000190] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000192 name: foramen perilymphaticum is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000193 name: foramen perilymphaticum accessorium is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000192 ! foramen perilymphaticum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000195 name: foramen perilymphaticus inferius synonym: "foramen pro aquaeducto cochleae" RELATED [UBERON:3000195] synonym: "inferior perilymphatic foramen" RELATED [UBERON:3000195] is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000192 ! foramen perilymphaticum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000208 name: obsolete frontoparietal constriction property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000209 name: frontoparietal fontanelle def: "Dorsal opening of the neurocranium." [AAO:LAP] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000224 name: hyobranchial muscle is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000226 name: hyolaryngeal complex def: "Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton." [AAO:LAP] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0008895 ! splanchnocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000234 name: inferior prenasal cartilage def: "Elongate cartilage that extends anteroventrally from the solum nasi to abut the ventral portion of the posterior aspect of the alary process of the premaxilla. It was first described by Wiedersheim in 1876." [AAO:LAP] synonym: "inferior prenasal process" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior lateralis" RELATED [UBERON:3000234] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000237 name: infrarostral cartilage def: "Larval lower jaw lies anterior to Meckels cartilage." [AAO:EJS] synonym: "infralabial cartilage" RELATED [UBERON:3000237] synonym: "mentomeckelian cartilage" RELATED [UBERON:3000237] is_a: UBERON:0003933 ! cranial cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001708 ! jaw skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000254 name: lamella alaris def: "Dorsal plate of the squamosal." [AAO:LAP] synonym: "horizontal arm of squamosal" RELATED [UBERON:3000254] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001695 ! squamous part of temporal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000255 name: lamina anterior of pars facialis is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000400 ! pars facialis of maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000259 name: lamina inferior def: "Lateral expansion of the crista intermedia that serves as the floor of the cavum medium." [AAO:LAP] synonym: "lamina inferior cristae intermediae" RELATED [UBERON:3000259] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006332 ! nasal capsule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000260 name: lamina nariochoanalis def: "Free, dorsal margin of the lamina inferior." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006332 ! nasal capsule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000263 name: lamina precerebralis def: "Posterior face of septum nasi." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000264 name: lamina superior def: "Lateral expansion of the crista intermedia that serves as the roof of the cavum medium." [AAO:LAP] synonym: "lamina superior cristae intermediae" RELATED [UBERON:3000264] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000265 name: obsolete larval structure def: "Anatomical structure that is part of the larva." [AAO:EJS] comment: Obsolete term in XAO. redundant with stage+skeletal system. Can be properly reinstated if needed. property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000280 name: margo mandibularis of pterygoid def: "Ventrally directed margin that connects the anterior and posterior rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010389 ! pterygoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000281 name: margo orbitalis of maxilla def: "Dorsal margin of the maxilla between the frontal and zygomatico-maxillary processes." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000282 name: margo orbitalis of pterygoid def: "Margin that connects the anterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010389 ! pterygoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000283 name: margo orbitalis of squamosal def: "Anterior margin of the squamosal that takes part in the formation of the orbit." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000254 ! lamella alaris property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000284 name: margo tympanicus of pterygoid def: "Margin that connects the posterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010389 ! pterygoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000288 name: maxillopalatine def: "A compound bone consisting of maxilla and palatine, can also contain a prefrontal and/or lacrimal; present in adult Gymnophiona." [AAO:EJS] is_a: UBERON:0008193 ! pneumatized bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011597 ! bone of upper jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000290 name: medial inferior prenasal cartilage is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000291 name: medial orbitonasal foramen def: "Opening on the postnasal wall for the medial branch (= ramus medialis nasi) of the ophthalmicus nerve." [AAO:LAP] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000292 name: medial ramus of pterygoid def: "In a triradiate pterygoid, the process that extends medially towards the otic capsule." [AAO:LAP] synonym: "ramus interior of pterygoid" RELATED [UBERON:3000292] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010389 ! pterygoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000294 name: median prenasal process def: "Anterior projection of the septum nasi that protrudes through the anterior nasal wall." [AAO:LAP] synonym: "processus prenasalis medius" RELATED [UBERON:3000294] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001706 ! nasal septum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000295 name: median symphysis is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000309 name: narial muscles is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000316 name: nasal opening is_a: UBERON:0006332 ! nasal capsule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000323 name: nasopremaxilla def: "A compound bone consisting of premaxilla, nasal and sometimes septomaxilla in adult members of Caeciliidae and Typhlonectidae." [AAO:EJS] is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000329 name: oblique cartilage def: "Semi-circular cartilaginous sheet that lies lateral to the side of the septum nasi." [AAO:LAP] synonym: "cartilago obliqua" RELATED [UBERON:3000329] synonym: "cartilago obliqua nasi" RELATED [UBERON:3000329] synonym: "cartilago obliquo" RELATED [UBERON:3000329] synonym: "dorsal process" RELATED [UBERON:3000329] synonym: "lamina obliqua" RELATED [UBERON:3000329] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000332 name: oculomotor foramen synonym: "nerve foramen III" EXACT [] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000333 name: olfactory foramen is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000341 name: optic fenestra is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000344 name: orbitonasal foramen def: "Foramen that forms a passage for one of the branches of the trigeminal nerve into the nasal region." [AAO:LAP] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000347 name: obsolete os articulare def: "Ossified posterior articular portion of Meckel's cartilage." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:2001805 [Term] id: UBERON:3000348 name: os basale def: "A bone that forms both the floor of the braincase and the posterior part of the skull." [UBERON:cjm] is_a: UBERON:0001474 ! bone element relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000362 name: obsolete other muscles property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000363 name: otic ligament is_a: UBERON:0008846 ! skeletal ligament is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000364 name: otic plate of pterygoid def: "Osseous expansion of the posterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010389 ! pterygoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000365 name: otic process is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000367 name: otic ramus of squamosal def: "Ramus (process) that extends medially toward the otic capsule." [AAO:LAP] synonym: "posterior ramus" RELATED [UBERON:3000367] synonym: "ramus paroticus" RELATED [UBERON:3000367] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000368 name: otoccipital def: "Fused prootic and exoccipital bones." [AAO:LAP] synonym: "otooccipital" EXACT [] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000372 name: obsolete palatine def: "Sliver of bone that invest part of or all the posterior aspect of each antorbital plane." [AAO:LAP] synonym: "neopalatine" BROAD [UBERON:3000372] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0001682 [Term] id: UBERON:3000374 name: obsolete palatine process of pars palatina of premaxilla synonym: "median palatal squame" RELATED [UBERON:3000374] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000375 name: palatine process of the pars facialis of the maxilla is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000400 ! pars facialis of maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000376 name: obsolete palatine tooth synonym: "palatine teeth" RELATED [UBERON:3000376] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm." xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0012073 [Term] id: UBERON:3000380 name: palatoquadrate articular process is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000381 name: paranasal commissure def: "Cartilaginous bridge that extends posteriorly to the anterolateral corner of the posterior nasal wall." [AAO:LAP] synonym: "commissura lateralis nasi" RELATED [UBERON:3000381] synonym: "connection between lamina nariochoanalis and postnasal wall" RELATED [UBERON:3000381] synonym: "processus lingularis" RELATED [UBERON:3000381] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000384 name: parasagittal crest is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011639 ! frontoparietal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000386 name: cultriform process def: "Process that extends anteriorly from the orbitotemporal region." [AAO:LAP] synonym: "pars medialis" RELATED [UBERON:3000386] synonym: "rostrum" RELATED [UBERON:3000386] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000387 name: subotic alae def: "Paired processes extending lateraly from the posterior body of the parasphenoid that, when present, support the otic capsules ventrally." [AAO:LAP] synonym: "processus lateralis" RELATED [UBERON:3000387] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000388 name: parasphenoid tooth synonym: "parasphenoid teeth" RELATED [UBERON:3000388] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0003672 ! dentition property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000389 name: paries nasi def: "Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000393 name: pars amphibiorum is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000394 name: pars articularis of mandibular arch def: "Posterior end of Meckel's cartilage that forms the articular head of the mandibular arch." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003107 ! Meckel's cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000395 name: pars basilaris is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000396 name: obsolete pars dentalis of maxilla def: "Tooth-bearing part of the maxilla." [AAO:LAP] synonym: "crista dentalis" RELATED [UBERON:3000396] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0004527 [Term] id: UBERON:3000397 name: obsolete pars dentalis of premaxilla def: "Tooth-bearing part of the premaxilla." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0034898 [Term] id: UBERON:3000399 name: pars externa plectri synonym: "extracolumellare" RELATED [UBERON:3000399] synonym: "extrapediale" RELATED [UBERON:3000399] synonym: "extraplectral" RELATED [UBERON:3000399] synonym: "extrastapes" RELATED [UBERON:3000399] synonym: "hyostapes" RELATED [UBERON:3000399] synonym: "medio-stapedial" RELATED [UBERON:3000399] synonym: "pars quadrata columellae" RELATED [UBERON:3000399] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000443 ! plectral apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000400 name: pars facialis of maxilla is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000401 name: pars facialis of maxillopalatine is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000288 ! maxillopalatine property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000405 name: pars inferior of labyrinth is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000406 name: pars interna plectri def: "Plate-like structure that lies in the fenestra ovalis. It arises within the membrana opercularis in the posterior part of the fenestra." [AOO:LAP] synonym: "operculum auris" RELATED [UBERON:3000406] synonym: "operculum fenestrae ovalis" RELATED [UBERON:3000406] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000443 ! plectral apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000408 name: pars media plectri is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000443 ! plectral apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000413 name: obsolete pars palatina of maxilla def: "Lingual ledge on the inner surface of the maxilla." [AAO:LAP] synonym: "lamina horizontalis" RELATED [UBERON:3000413] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0005871 [Term] id: UBERON:3000414 name: obsolete pars palatina of premaxilla def: "Lingual ledge on the inner surface of the premaxilla." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0034900 [Term] id: UBERON:3000428 name: perilymphatic system def: "Consists of enlarged cistern against which the operculum and footplate of the columella rest in the oval window. Together with the endolymphatic systems comprises the membranous labryinth of the inner ear. Duellman and Trueb 1994." [PHENOSCAPE] is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000431 name: pila antoptica def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. The pila antoptica is posterior to pila metoptica together with which it may enclose the foramen for the ocular motor nerve and opthalmica magna artery." [PHENOSCAPE] is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000432 name: pila metoptica def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. The pila metoptica is anterior to pila antoptica together with which it may enclose the foramen for the ocular motor nerve and opthalmica magna artery. Anterior to the pila antoptica is the pila preoptica (another pillar of cartilage) between these two cartilages emerges the optic and trochlear nerves." [PHENOSCAPE] is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000433 name: pineal foramen is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0011639 ! frontoparietal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000434 name: planum antorbitale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000437 name: planum conchale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000438 name: planum internasale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000440 name: planum terminale def: "Vertical plate of cartilage that is fused posterodorsally to the oblique cartilage and anteriorly to the lamina inferior." [AAO:LAP] synonym: "pars terminalis" RELATED [UBERON:3000440] synonym: "terminal plate" RELATED [UBERON:3000440] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000441 name: planum triangulare def: "Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000443 name: plectral apparatus def: "Complex sound-conducting anatomical structure." [AAO:LAP] is_a: UBERON:0001686 ! auditory ossicle bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000446 name: posterior condyle is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:3000515 ! pseudoangular property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000448 name: posterior maxillary process def: "Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000449 name: posterior maxillary process dorsal process is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3000448 ! posterior maxillary process property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000450 name: posterior mental process is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0003278 ! skeleton of lower jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000451 name: posterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends posterolaterally towards the jaw articulation." [AAO:LAP] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0010389 ! pterygoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000453 name: posterolateral vomerine process is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000454 name: postnasal wall def: "Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi." [AAO:LAP] synonym: "posterior wall of nasal capsule" BROAD [] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000459 name: prearticular coronoid process def: "Point of insertion of the masticatory musculature." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011637 ! prearticular bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000464 name: obsolete premaxillary tooth synonym: "premaxillary teeth" RELATED [UBERON:3000464] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Modified by cjm: added logical definition" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:2001626 [Term] id: UBERON:3000467 name: preorbital process of the pars facialis of the maxilla synonym: "preorbital process" EXACT [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001697 ! orbit of skull relationship: part_of UBERON:3000400 ! pars facialis of maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000473 name: obsolete presumptive epidermis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000475 name: obsolete presumptive integument property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000486 name: processus ascendens plectri def: "Cartilaginous or ligamentous connection between the pars externa plectri and the crista parotica." [AAO:LAP] synonym: "laterohyale" RELATED [UBERON:3000486] synonym: "processus ascendens columellae" RELATED [UBERON:3000486] synonym: "processus dorsalis columellae" RELATED [UBERON:3000486] synonym: "processus superior columellae" RELATED [UBERON:3000486] synonym: "suprastapediale" RELATED [UBERON:3000486] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000399 ! pars externa plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000492 name: processus infrafenestralis def: "Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage." [AAO:LAP] synonym: "dorsal crest" RELATED [UBERON:3000492] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000493 name: processus internus of pseudoangular synonym: "processus internus" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000515 ! pseudoangular property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000494 name: processus lingualis of pterygoid def: "Dorsolateral process of the of the medial ramus of the pterygoid." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000292 ! medial ramus of pterygoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000500 name: processus posterior of maxilla def: "Posterior, toothless portion of the maxilla by which it usually comes in contact with the quadratojugal." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000505 name: processus pterygoideus of maxilla def: "Posterior end of the pars palatina of the maxilla that is in contact with the anterior ramus of the pterygoid." [AAO:LAP] is_a: UBERON:0004527 ! alveolar process of maxilla is_a: UBERON:0004530 ! bony projection property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000509 name: processus suprafenestralis is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000512 name: processus zygomatico-maxillaris def: "Posterodorsal extension of the maxilla by which it establishes contact with the squamosal." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000515 name: pseudoangular is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000516 name: pseudobasal process is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000518 name: pseudodentary def: "Compound bone of adult Gymnophiona, consisting of dentary, coronoid and mentomeckelian." [AAO:EJS] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000519 name: pseudodentary tooth is_a: UBERON:0003268 ! tooth of lower jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm." xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000521 name: obsolete pterygoid def: "Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae." [AAO:LAP] synonym: "pterygoidien" RELATED [UBERON:3000521] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0010389 [Term] id: UBERON:3000523 name: pterygoid process of palatoquadrate def: "Process that extends anteriorly from the anterolateral margin of the palatoquadrate and articulates or synchondrotically fuses to the posterior end of the posterior maxillary process." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000524 name: pterygoquadrate is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003108 ! suspensorium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000527 name: quadrate process of palatoquadrate is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000538 name: recessus fenestrae ovalis is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000428 ! perilymphatic system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000539 name: recessus marsupiatus of premaxilla def: "Is a recess on the surface of the premaxilla near to the base of the pars facialis." [PHENOSCAPE] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000540 name: recessus vaginiformis def: "Is a space on the interior surface of the pars facialis of the maxilla." [PHENOSCAPE] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000543 name: retroarticular process def: "Bony process that is part of the articular and is the point of insertion of the m. interhuoideus posterior." [AAO:LAP] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000515 ! pseudoangular property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000547 name: rostral process def: "Is a process of the nasal bone directed anteriorly towards the rostrum." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001681 ! nasal bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001709 ! upper jaw region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000560 name: septum semicircularium anterior def: "The anterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000561 name: septum semicircularium laterale def: "The lateral connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000562 name: septum semircularium posterior def: "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000563 name: seydels palatal process is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000068 ! cartilago ectochoanalis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000565 name: skeletal support for eminentia olfactoria def: "Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000569 name: solum nasi def: "Unpaired, horizontal plate that forms the floor of the nasal capsule." [AAO:LAP] synonym: "nasal floor" RELATED [UBERON:3000569] synonym: "planum basale" RELATED [UBERON:3000569] synonym: "solum nasale" RELATED [UBERON:3000569] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000570 name: spatium sacculare is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000428 ! perilymphatic system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000571 name: specialized connective tissue is_a: UBERON:0002384 ! connective tissue property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000572 name: sphenethmoid def: "Endochondral bone that forms the anterior portion of the braincase and forms from one ossification center on each side of the orbital cartilage." [AAO:LAP] synonym: "orbitosphenoid" RELATED [UBERON:3000572] synonym: "orbitotemporal" RELATED [UBERON:3000572] synonym: "Os sphenethmoidale" RELATED [UBERON:3000572] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000580 name: stylus of pars media plectri synonym: "columella" RELATED [UBERON:3000580] synonym: "columella auris" RELATED [UBERON:3000580] synonym: "columellare" RELATED [UBERON:3000580] synonym: "interstapediale" RELATED [UBERON:3000580] synonym: "mediostapediale" RELATED [UBERON:3000580] synonym: "mesostapediale" RELATED [UBERON:3000580] synonym: "os columellare" RELATED [UBERON:3000580] synonym: "os intermedium" RELATED [UBERON:3000580] synonym: "stapes" RELATED [UBERON:3000580] synonym: "stelidium" RELATED [UBERON:3000580] synonym: "stilus columellare" RELATED [UBERON:3000580] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000408 ! pars media plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000581 name: sulcus dentalis of maxilla def: "Groove located between the pars dentalis and the bases of the maxillary teeth." [AAO:LAP] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000582 name: sulcus dentalis of premaxilla def: "Groove located between the pars dentalis and the bases of the premaxillary teeth." [PHENOSCAPE] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000583 name: sulcus for Meckels cartilage def: "A groove on the palatoquadrate that is occupied by the Meckel's cartilage." [PHENOSCAPE] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:3000012 ! angulosplenial coronoid process property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000586 name: superior prenasal cartilage def: "Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000587 name: obsolete supraangular def: "The suprangular or surangular is a jaw bone found in most land vertebrates, except mammals. It's usually in the back of the jaw, on the upper edge, and is connected to all other jaw bones: dentary, angular, splenial and articular. It is often a muscle attachment site." [PHENOSCAPE] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0011636 [Term] id: UBERON:3000588 name: obsolete supraoccipital alt_id: UBERON:3010834 def: "Median, unpaired bone that can form the dorsal margin of the foramen magnum." [AAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0004747 [Term] id: UBERON:3000590 name: supraorbital flange is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011639 ! frontoparietal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000591 name: suprasphenoid def: "Endochondral ossification of the dorsomedial portion of the braincase." [AAO:LAP] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000597 name: symphysis maxillaris is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000599 name: taenia tecti marginalis def: "Cartilaginous connection between the orbital cartilage and otic capsules." [PHENOSCAPE] is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000601 name: tectum nasi def: "Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi." [AAO:LAP] synonym: "tectum nasale" RELATED [UBERON:3000601] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000605 name: tentacular foramen is_a: UBERON:0011773 ! upper jaw opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000610 name: trochlear foramen synonym: "nerve foramen IV" EXACT [] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000619 name: tympanosquamosal def: "Central, funnel-shaped, ossified portion of the tympanic annulus fused to the squamosal bone." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003108 ! suspensorium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000628 name: ventral ramus of squamosal def: "Longest of the three squamosal rami; it invests the dorsolateral margin of the palatoquadrate. The distal end of the ventral ramus invests the quadrate and articulates with the quadratojugal." [AAO:LAP] synonym: "processus posterolateralis" RELATED [UBERON:3000628] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001695 ! squamous part of temporal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000634 name: vomerine canal is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000639 name: zygomatic ramus of squamosal def: "Ramus (process) that projects anteriorly from the dorsal body of the squamosal and forms part of the posterior margin of the orbit." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000640 name: arcus praeoccipitalis def: "Skeletal structure that separates the inferior and superior perilymphatic foramina." [AAO:LAP] is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000642 name: maxillopalatine tooth is_a: UBERON:0003267 ! tooth of upper jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000644 name: processus lingularis of nasal skeleton def: "Rod-shaped process that extends caudally from the inferior edge of the planum terminale." [AAO:LAP] synonym: "lingular process" RELATED [UBERON:3000644] synonym: "processus lingularis" BROAD [] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000645 name: corpus alt_id: UBERON:3010459 def: "Basal part of the septomaxilla." [AAO:LAP] synonym: "centrum" RELATED [UBERON:3000645] synonym: "pars horizontalis" RELATED [UBERON:3000645] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0012360 ! bone of jaw relationship: part_of UBERON:0011167 ! septomaxilla bone relationship: part_of UBERON:3000998 ! suprarostral cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000646 name: margo libera def: "Anterior, rounded portion of the corpus of the septomaxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000647 name: crista interna def: "Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000492 ! processus infrafenestralis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000648 name: crista praeopercularis def: "Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000408 ! pars media plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000649 name: anterior process of vomer def: "Process that extends anterolaterally toward the maxilla-premaxilla articulation." [AAO:LAP] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000650 name: processus frontalis of maxilla def: "Anterio portion of the maxilla that may contact the nasal and take part in the formation of a groove for the nasolacrimal duct." [AAO:LAP] synonym: "processus frontalis" BROAD [] synonym: "processus praeorbitalis of the pars facialis" RELATED [UBERON:3000650] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000651 name: lamina anterior of maxilla def: "Most anterior part of the maxilla, which is in contact with the premaxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000652 name: fossa maxillaris def: "Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina." [AAO:LAP] comment: Alternative more fish orientated definition: A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]. [PHENOSCAPE] synonym: "maxillary saddle" EXACT [] is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000653 name: pars glenoidalis of quadratojugal def: "Portion of the quadratojugal that makes contact dorsally with the distal portion of the squamosal." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011267 ! quadratojugal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000654 name: pars jugalis def: "Anterior part of the quadratojugal that is in contact with the processus posterior of the maxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011267 ! quadratojugal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000655 name: processus dorsalis of lamella alaris def: "Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it." [AAO:LAP] synonym: "processus dorsailis" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000656 name: processus posterodorsalis of lamella alaris def: "Posterior process of the lamella alaris." [AAO:LAP] synonym: "processus posterodorsalis" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000657 name: dentigerous process def: "Tooth-bearing process of the vomer." [AAO:LAP] synonym: "torus dentigerous" RELATED [UBERON:3000657] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000658 name: prechoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the postchoanal process occurs at the level of the dentigerous process." [AAO:LAP] synonym: "processus choanalis anterior" RELATED [UBERON:3000658] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000659 name: postchoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the prechoanal process occurs at the level of the dentigerous process." [AAO:LAP] synonym: "processus choanalis posterior" RELATED [UBERON:3000659] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000660 name: margo choanalis def: "Margin between the prechoanal and postchoanal process. It bounds the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000661 name: crista vomeri def: "Ridge on the dorsal surface of the vomer that runs from the anterior to the postchoanal processes of the vomer; it takes part in the fixation of the bone to the lateral margin of the solum nasi." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000662 name: processus posterior of parasphenoid def: "Posterior projection of the median part of the parsphenoid, which may extend over the posterior margins of the subotic alae." [AAO:LAP] synonym: "processus posterior" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000663 name: parahyoid is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000664 name: hyoid plate def: "Azygous or paired bone that occurs on the ventral surface of the hyoid plate." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000667 name: pars reuniens def: "Area of fusion of the ceratohyals." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0005884 ! hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000668 name: hyoglossal sinus def: "Is the space along the anterior edge of the hyoid plate between the hyale and through which passes the hyoglossus muscle as it passes dorsally into the tongue." [PHENOSCAPE] comment: A anuran (frog) term is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:3000664 ! hyoid plate property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000670 name: anterior process of hyoid apparatus is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000671 name: anterolateral process of hyoid plate def: "Processes that flank the hyales laterally and extend anterolaterally from the anterolateral margin of the hyoid plate. They are formed as a result of new cartilaginous growth lateral to the basibranchial." [AAO:LAP] synonym: "processus alaris" RELATED [UBERON:3000671] synonym: "processus anterolateralis" RELATED [UBERON:3000671] synonym: "processus lateralis anterior" RELATED [UBERON:3000671] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000664 ! hyoid plate property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000672 name: posterolateral process def: "Paired processes that extend posterolaterally from the posterolateral margin of the hyoid plate. These processes are formed as a result of new cartilaginous growth lateral to the basibranchial and hypobranchial plate." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3000664 ! hyoid plate property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000673 name: posteromedial process def: "Cartilaginous, paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes invest the laryngeal apparatus and are ossified in the adult." [AAO:LAP] synonym: "cornua posteriores" RELATED [UBERON:3000673] synonym: "hyoid" RELATED [UBERON:3000673] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3000664 ! hyoid plate property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000676 name: bronchial process def: "Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring." [AAO:LAP] synonym: "processus trachealis" RELATED [UBERON:3000676] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000677 name: lateral process of cricoid cartilage synonym: "lateral process" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000678 name: esophageal process def: "Median process located on the posterior end of the cricoid cartilage." [AAO:LAP] synonym: "spina oesophagea" RELATED [UBERON:3000678] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000680 name: manubrium of hyale def: "Proximal section of the hyale." [AAO:LAP] synonym: "processus anteriores" RELATED [UBERON:3000680] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000101 ! hyale property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000681 name: hyoid apparatus opening is_a: UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000683 name: sinus nervi hypoglossi def: "Depression that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale." [AAO:Rocek_2003] is_a: UBERON:3000681 ! hyoid apparatus opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000685 name: foramen nervi hypoglossi def: "Foramen that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale." [AAO:Rocek_2003] synonym: "foramen laterale" RELATED [UBERON:3000685] is_a: UBERON:3000681 ! hyoid apparatus opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000687 name: processus confluens def: "Strip of cartilage that forms the lateral margin of the foramen nervi hypoglossi." [AAO:LAP] synonym: "processus alaris" RELATED [UBERON:3000687] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000101 ! hyale property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000688 name: prominentia apicalis dorsalis def: "Anterior end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis anterior" RELATED [UBERON:3000688] is_a: UBERON:0011769 ! cartilaginous projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001740 ! arytenoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000689 name: prominentia apicalis ventralis def: "Posterior (cardiac) end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis posterior" RELATED [UBERON:3000689] is_a: UBERON:0011769 ! cartilaginous projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001740 ! arytenoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000692 name: pedicel def: "Paired stalks located dorsolateral to the vertebral centrum that provide support to the lateral margins of the neural arch laminae." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000694 name: atlantal cotyle def: "Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle." [AAO:Francis_1934] synonym: "cavitas glenoidalis" RELATED [UBERON:3000694] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001092 ! vertebral bone 1 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000696 name: posterior intervertebral notch def: "Indentation on the anterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space." [AAO:LAP] is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000701 name: intervertebral space def: "Space formed by the anterior and posterior intervertebral notches. The intervertebral spaces accommodate the spinal nerves as they emerge from the spinal canal." [AAO:LAP] synonym: "intervertebral space" RELATED [UBERON:3000701] is_a: UBERON:0010276 ! space in vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000704 name: anterior intervertebral notch def: "Indentation on the posterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space." [AAO:LAP] is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000707 name: pleurapophysis def: "Paired processes that represent the rib attachments to the vertebra plus the ribs." [AAO:Duellman_and_Trueb_1994] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000711 name: procoelous def: "Holochordal vertebral centra that are concave anteriorly and convex posteriorly; they bear a condyle on the posterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions." [AAO:Pugener_2002, AAO:Trueb_1973] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000712 name: opisthocoelous def: "Ectochordal or stegochordal vertebral centra that are convex anteriorly and concave posteriorly; they bear a condyle on the anterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions." [AAO:Pugener_2002, AAO:Trueb_1973] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000713 name: epichordal def: "Vertebral centrum that originates from ossification of the dorsal portion of the perichordal tube; the resulting element tends to be depressed in cross section." [AAO:Kluge_and_Farris_1969] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000714 name: perichordal def: "Vertebral centrum that originates from ossification of the entire perichordal tube; the resulting element is cylindrical in cross section and may have an open (notochord retained) or solid center." [AAO:Kluge_and_Farris_1969] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000715 name: heterocoelous def: "Vertebral centrum that bears saddle-shaped articular surfaces at both ends, having a convexity in the right-left axis and a concavity in the dorsoventral axis. This morphology allows great lateral and vertical flexion." [AAO:LAP] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000716 name: acoelous def: "Vertebral centrum with flat ends. Between successive vertebrae there is a fibrocartilaginous intervertebral body with a gel-like core, the nucleus pulposus, which is derived from the embryonic notochord. Acoelous vertebrae seem especially suited to receive and distribute compressive forces within the vertebral column." [AAO:LAP] synonym: "amphiplatyan" BROAD [] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000717 name: amphicoelous def: "Ectochordal, biconcave or terminally flat vertebral centrum. This design seems to allow limited motion in most directions. An intervertebral body (which may or may not be independent from the adjacent centra) fills the cavity between successive centra. The intervertebral body usually is formed by soft material that may be derived, at least in part, from the embryonic notochord." [AAO:Pugener_2002, AAO:Trueb_1973] comment: The tuatara spine is made up of hourglass-shaped amphicoelous vertebrae, concave both before and behind. This is the usual condition of fish vertebrae and some amphibians, but is unique to tuatara within the amniotes[Wikipedia]. is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000718 name: ectochordal def: "Spool-shaped vertebral centrum with an open center in which the notochord lies." [AAO:Griffiths_1959] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000719 name: holochordal def: "Spool-shaped vertebral centrum with a solid center. All traces of the notochord dissapear." [AAO:Griffiths_1959] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000720 name: stegochordal def: "Vertebral centrum that is depressed dorsoventrally and solid. All traces of the notochord dissapear." [AAO:Griffiths_1959] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000727 name: haemal arch lamina def: "Paired plates that form the haemal arch. The lateral margin of each lamina is firmly attached to the ventral surface of the caudal vertebral centrum and the medial end fuses to the medial end of the opposite lamina." [AAO:Pugener_2002] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006065 ! hemal arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000728 name: nucal keel def: "Longitudinal process found in all cervical vertebrae, except the atlas, for the attachment of dorsal head musculature." [AAO:Duellman_and_Trueb_1994] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001092 ! vertebral bone 1 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000730 name: foramen nutritium def: "Opening on the lateral side of the vertebra for the passage of blood vessels." [AAO:LAP] is_a: UBERON:0010276 ! space in vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000735 name: mid-dorsal keel def: "Ridge-shaped structure present on the dorsomedial surface of the neural arch lamina; this structure is produced at the point of junction of the contralateral sides of each neural arch." [AAO:Pugener_2002] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000736 name: obsolete deltopectoral crest def: "Ridge on the ventral aspect of the humeral shaft. It serves for the attachment of the mm pectoralis and shoulder musculature used primarily for limb adduction." [AAO:LAP] synonym: "crista ventralis" EXACT [] synonym: "crista ventralis humeri" EXACT [UBERON:3000736] synonym: "deltoid crest" RELATED [UBERON:3000736] is_obsolete: true replaced_by: UBERON:0002498 [Term] id: UBERON:3000743 name: sacral condyle def: "Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003690 ! fused sacrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000744 name: urostyle cotyle def: "Anterior, single or paired concave facets for articulation with the sacral condyle(s)." [AAO:LAP] synonym: "fossa condyloidea ossis coccygei" RELATED [UBERON:3000744] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000745 name: webbing of bone in vertebral column def: "In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle." [AAO:Pugener_and_Maglia_2008] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001130 ! vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000746 name: urostyle ridge def: "Longitudinal crest on the dorsal side of the urostyle formed by the caudal neural arches." [AAO:Maglia_et_al_2007] synonym: "crista ossi coccygei" RELATED [UBERON:3000746] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000748 name: suprascapula def: "Paired, cartilaginous elements located in the dorsolateral shoulder region. Each suprascapula is a flat broad blade that extends medially." [AAO:LAP] synonym: "adscapulum" RELATED [UBERON:3000748] synonym: "episcapulum" RELATED [UBERON:3000748] synonym: "omolita" RELATED [UBERON:3000748] synonym: "scapula major" RELATED [UBERON:3000748] is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000752 name: pars acromialis def: "Prominent structure (anteromedial head) that forms the anterior section of the ventral margin of the scapula." [AAO:LAP] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000753 name: pars glenoidalis of scapula def: "Concave structure (posteromedial head) that forms the posterior head of the ventral margin of the scapula. The pars glenoidalis articulates with the humerus, and comprises the dorsal portion of the glenoid fossa." [AAO:LAP] synonym: "glenoid head of scapula" EXACT [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000755 name: pectoral girdle opening is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000756 name: crista dorsalis humeri def: "Small hooked process on the dorsal aspect of the humeral shaft; it does not extend on to the glenoid head. The m subscapularis is inserted on it." [AAO:LAP] synonym: "crista dorsalis" RELATED [UBERON:3000756] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000757 name: zonal area def: "All those parts of the pectoral girdle ventral and medial to the glenoid fossa." [AAO:LAP] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000759 name: omosternum def: "Proximal portion of the prezonal element of the pectoral girdle. It may be a flat, midventral cartilaginous structure or a calcified or bony element elaborated into a stylum." [AAO:LAP] synonym: "episternum" RELATED [UBERON:3000759] synonym: "interclavicle" RELATED [UBERON:3000759] synonym: "prezonal element" RELATED [UBERON:3000759] synonym: "prezonal sternum" RELATED [UBERON:3000759] synonym: "sternum superior" RELATED [UBERON:3000759] is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0010363 ! endochondral element is_a: UBERON:3000936 ! zonal element relationship: part_of UBERON:0000975 ! sternum relationship: part_of UBERON:3000937 ! prezonal element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000762 name: epicoracoid def: "Paired, flat cartilaginous arches that compose the central portion of the zonal area, unites the clavicle and coracoid of each half of the pectoral girdle, and form the medial margins of the pectoral fenestrae." [AAO:LAP] synonym: "coracoid cartilage" RELATED [UBERON:3000762] synonym: "corpus sterni" RELATED [UBERON:3000762] synonym: "entosternal" RELATED [UBERON:3000762] synonym: "infracoracoid" RELATED [UBERON:3000762] synonym: "sterni ossa media" RELATED [UBERON:3000762] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:3000936 ! zonal element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000763 name: epicoracoid bridge def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum." [AAO:LAP] synonym: "procoracoid bridge" RELATED [UBERON:3000763] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000767 name: pelvic girdle opening is_a: UBERON:0007832 ! pelvic girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000771 name: acetabular depression def: "The central, most concave portion of the acetabulum, which remains open." [AAO:LAP] is_a: UBERON:3000767 ! pelvic girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000773 name: ilial ridge def: "Longitudinal crest on the dorsal side of the shaft of the ilium." [AAO:LAP] synonym: "ala ossis ilei" RELATED [UBERON:3000773] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000774 ! ilial shaft property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000774 name: ilial shaft def: "Anterior rod that articulates with the sacrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001273 ! ilium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000775 name: obsolete ilial corpus def: "Posterior body of the ilium that forms the anterior half of the acetabulum." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0010747 [Term] id: UBERON:3000776 name: glenoid foramen def: "Opening on the glenoid fossa." [AAO:LAP] is_a: UBERON:3000755 ! pectoral girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000777 name: epicoracoid horn def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000778 name: supracoracoid foramen def: "Opening on the scapulocoracoid bone through which passes the n. supracoracoideus and the corresponding artery and vein." [AAO:LAP] synonym: "foramen supracoracoideum" RELATED [UBERON:3000778] is_a: UBERON:3000755 ! pectoral girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000779 name: pectoral fenestra def: "Ovoid space on the pectoral girdle limited anteriorly by the procoracoid, medially by the epicoracoid, and posteriorly by the coracoid." [AAO:LAP] synonym: "fenestra between procoracoid and coracoid" RELATED [UBERON:3000779] is_a: UBERON:3000755 ! pectoral girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000780 name: incisura coracoidea def: "Notch that separates the cartilaginous regions of the procoracoid and coracoid." [AAO:LAP] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000783 name: fovea capitis of humerus def: "Ovoid roughened pit, which is situated a little below and behind the center of the head, and serves as a site of attachment for ligaments." [AAO:LAP] comment: Not to be confused with the fovea capitis of the femur is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0006801 ! proximal head of humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000784 name: ulnar condyle def: "Semi-elliptical ball located at the lower end of the humerus, adjacent to the humeral ball." [AAO:LAP] synonym: "medial condyle" RELATED [UBERON:3000784] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000976 ! humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000785 name: trochlear groove of humerus def: "Furrow between the humeral head and the ulnar condyle." [AAO:LAP] synonym: "trochlear sulcus of humerus" EXACT [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000976 ! humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000786 name: fossa cubitalis ventralis def: "Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed." [AAO:LAP] is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000787 name: collum antibrachii def: "In a fused radio-ulna, the proximal portion of the compound bone (where the sulcus longitudinalis is barely evident or absent) is a cylindrical pillar." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006715 ! radio-ulna property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000792 name: anterior ramus of cleithrum def: "Subdivision of the cleithrum that extends along the anterior edge of the suprascapula." [AAO:LAP] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000793 name: anomocoelous def: "Stegochordal slightly biconcave or flat terminally vertebral centrum. Each intervertebral cartilage is subdivided anteriorly and posteriorly, producing a free intervertebral element between adjacent vertebrae. This element subsequently ossifies and remains free." [AAO:Trueb_1973] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000794 name: displasiocoelous def: "Vertebral column in which the first seven vertebrae have holochordal centra and the intervertebral cartilages are posteriorly subdivided in the procoelous manner. The eighth presacral vertebra has a holochordal centrum and the intervertebral cartilage is subdivided in the opisthocoelous manner. Thus, the first seven presacral vertebrae are concave anteriorly and convex posteriorly, whereas the eighth is biconcave." [AAO:Trueb_1973] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000796 name: imbricate neural arch def: "Overlapping neural arches that obscure the spinal cord dorsally." [AAO:Trueb_1973] is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000797 name: non-imbricate neural arch def: "Neural arches that do not overlap, thus exposing the spinal cord dorsally." [AAO:Trueb_1973] is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000798 name: presacral shield def: "Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates." [AAO:Trueb_1973] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009568 ! trunk region of vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000799 name: cartilago paraglenoidalis def: "Strip of cartilage that separates the coracoid from the scapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000800 name: intercotylar space def: "Space between the atlantal cotyles." [AAO:LAP] synonym: "spatium interglenoidale" RELATED [UBERON:3000800] is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0001092 ! vertebral bone 1 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000801 name: caput glenoidale def: "Convex articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000802 name: fossa glenoidalis def: "Concave articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000803 name: sulcus articularis lateralis def: "In a zygapophysis that has ridges and sulci, the lateral canal between the carina distalis and the carina medialis." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000804 name: sulcus articularis medialis def: "In a zygapophysis that has ridges and sulci, the medial canal between the carina medialis and the carina proximalis." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000805 name: carina proximalis def: "In a zygapophysis that has ridges and sulci, the proximal ridge." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000806 name: carina medialis def: "In a zygapophysis that has ridges and sulci, the medial ridge." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000807 name: carina distalis def: "In a zygapophysis that has ridges and sulci, the distal ridge." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000808 name: parasagittal processes def: "Paired, posteriorly directed process at the posterior margin of each neural arch lamina." [AAO:Cannatella_1985] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000809 name: accessory articulation def: "Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum." [AAO:Cannatella_1985] is_a: UBERON:0004905 ! articulation relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000810 name: fissura sagittalis def: "Medial groove in the longitudinal ridge of the urostyle formed by the incomplete dorsal fusion of the caudal neural arches." [AAO:Maglia_et_al_2007] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000746 ! urostyle ridge property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000811 name: glenoid end of clavicle def: "Lateral end of the clavicle, which usually lies in close proximity to the pars acromialis of the scapula, and occassionally may fuse to it." [AAO:LAP] synonym: "extremitas glenoidalis" RELATED [UBERON:3000811] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001105 ! clavicle bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000813 name: sulcus pro cartilagine praecoracoidealis def: "Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage." [AAO:LAP] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001105 ! clavicle bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000814 name: glenoid head of coracoid def: "Lateral end of the coracoid, which forms the medial portion of the glenoid fossa." [AAO:LAP] synonym: "intumescentia glenoidalis" RELATED [UBERON:3000814] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004743 ! coracoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000815 name: sternal head of coracoid def: "Medial end of the coracoid, which is synchondrotically fused to the epicoracoid cartilage." [AAO:LAP] synonym: "pars epicoracoidealis" RELATED [UBERON:3000815] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004743 ! coracoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000816 name: margo fenestralis def: "Anterior margin of the coracoid, which forms the posterior edge of the pectoral fenestra." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004743 ! coracoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000817 name: margo posterior def: "Posterior margin of the coracoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004743 ! coracoid bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000818 name: margo anterior of scapula def: "Anterior margin of the scapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000819 name: margo clavicularis def: "Inferior margin of the pars acromialis of the scapula, which articulates with the clavicule." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000820 name: margo posterior of scapula def: "Posterior margin of the scapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000821 name: margo suprascapularis def: "Superior margin of the scapula, which articulates with the suprascapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000822 name: pars suprascapularis def: "Superior portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000823 name: sinus interglenoidalis def: "Notch or indentation between the pars glenoidalis and pars acromialis of the scapula." [AAO:LAP] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000824 name: tenuitas cristaeformis def: "Leading (anterior) portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000825 name: crista longitudinalis scapula def: "Longitudinal ridge on the medial (inner) face of the scapula." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000827 name: margo anterior of cleithrum def: "Anterior margin of the anterior ramus of the cleithrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000828 name: margo posterior of cleithrum def: "Posterior margin of the posterior ramus of the cleithrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000829 name: margo scapularis def: "Lateral margin of the suprascapula, which articulates with the scapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000830 name: margo vertebralis def: "Medial margin of the suprascapula, which lies dorsal to the vertebral column." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000831 name: spina acromioidea def: "Small process of the lamina recurvata that extends laterally toward the scapular-suprascapular articulation." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000832 name: anterior lamina recurvata def: "Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000833 name: sinus dorsalis def: "Notch or indentation between the anterior and posterior rami of the cleithrum." [AAO:LAP] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000834 name: posterior lamina recurvata def: "Portion of the posterior ramus of the cleithrum that invests the posterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000836 name: crista lateralis humeri def: "Ridge on the lateral aspect of the humeral shaft located just anterior to the radial (lateral) epicondyle." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000837 name: crista medialis humeri def: "Ridge on the medial aspect of the humeral shaft that extends from the level of the middle portion of the shaft to ulnar (medial) epicondyle." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000839 name: crista radii def: "Small ridge on the lateral aspect of the radial shaft, located at the level of the collum antibrachii." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001423 ! radius bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000840 name: capitulum of radius def: "Lateral portion of the proximal (upper) articular surface of the radius that consists of an eminence with a rounded apex." [AAO:LAP] is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001423 ! radius bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000841 name: obsolete capitulum radii def: "Small eminence on the distal articular head of the radius." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:3000840 [Term] id: UBERON:3000842 name: capitulum ulnae def: "Small eminence on the distal articular head of the ulna." [AAO:LAP] is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001424 ! ulna property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000844 name: sulcus longitudinalis def: "In a fused radio-ulna, longitudinal furrow that demarcates the area of fusion of both elements. This sulcus is deep in the distal portion of the compound bone, but barely evident or absent at the proximal end." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006715 ! radio-ulna property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000846 name: element Y of fore mesopodium def: "Oval carpal element that is located on the anteromedial side of the radiale and the anterolateral side of the ulnare. Anteriorly, it articulates with carpals 1 through 4 (or 2 through 5 according to some authors). It is also recognized as centrale by some authors. This element originates from one, two, or three condensation centers. Occasionally it may fuse to carpal 2(1), carpal 3(2), the ulnare, or other elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009880 ! carpal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000856 name: intercalary element of fore digit def: "Small elements present in all digits of the manus, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally." [AAO:LAP] is_a: UBERON:0004249 ! manual digit bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000859 name: foramen perforans carpi def: "Opening for the passage of the perforans carpi artery from the ventral to the dorsal side. It perforates the compound ulnare + intermedium." [AAO:LAP] is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:3000856 ! intercalary element of fore digit property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000862 name: pubo-ischium def: "Composite element formed by the fusion of the ischium and pubis." [AAO:LAP] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000865 name: epileon def: "Dorsal extremity of the ilial shaft, which remains cartilaginous." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000774 ! ilial shaft property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000866 name: agger limitans anterior of ilium def: "Shelf-like expansion of the ilial corpus that forms the anterior border of the acetabulum." [AAO:LAP] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006802 ! acetabular rim property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000867 name: agger limitans anterior of ischium def: "Shelf-like expansion of the ischium that forms the posterior border of the acetabulum." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001274 ! ischium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000868 name: obsolete supra-acetabular expansion def: "Dorsal portion of the ilial corpus, located above the acetabulum." [AAO:LAP] synonym: "dorsal acetabular expansion" RELATED [UBERON:3000868] synonym: "pars ascendens ilei" RELATED [UBERON:3000868] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:4200125 [Term] id: UBERON:3000869 name: ilial protuberance def: "Small, dorsolaterally projecting knob located just anterior to the supra-acetabular expansion and about the level of the anterior border of the acetabulum." [AAO:LAP] synonym: "dorsal protuberance" RELATED [UBERON:3000869] synonym: "tuber superior" RELATED [UBERON:3000869] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000774 ! ilial shaft property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000870 name: preacetabular expansion def: "Ventral portion of the ilial corpus, located anteroventral to the acetabulum." [AAO:LAP] synonym: "pars descendens ilei" RELATED [UBERON:3000870] synonym: "ventral acetabular expansion" RELATED [UBERON:3000870] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0010747 ! body of ilium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000871 name: fossula tuberis superioris def: "Small depression dorsal to the proximal portion of the collum ilei and ventral to the ilial protuberance." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010747 ! body of ilium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000872 name: collum ilei def: "Cyllindrical pillar that originates anterior to the acetabulum and extends to the ilial shaft." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010747 ! body of ilium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000873 name: pars cylindriformis ilei def: "Elongate, cylindrical structure on the ventral side of the shaft of the ilium that extends through its entire length." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000774 ! ilial shaft property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000874 name: crista ischii def: "Crest on the posterior side of the ischium, which may also extend to the posteroventral aspect of pubis." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000875 name: spina pelvis posterior def: "Small, rounded process on the anterodorsal margin of the ischium, just posterior to the area of articulation with the ilium." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000876 name: spina pelvis anterior def: "Small, rounded process on the anteroventral margin of the preacetabular expansion of the ilial corpus." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010747 ! body of ilium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000877 name: intumescentia bilateralis inferior def: "Small protuberance on the ischium, located close to its posteroventral margin." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001274 ! ischium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000878 name: intumescentia bilateralis superior def: "Small protuberance on the ischium, located at the level of the superior margin of the acetabulum and close to its posterior margin." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000879 name: incisura terminalis def: "Small indentation on the posterior margin of the ischium, ventral to the intumescentia bilateralis superior." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001274 ! ischium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000880 name: crista hypertrophica ischium def: "Large protuberance on the dorsal aspect of the ischium that extends from the ischio-ilium articulation to the spina pelvis posterior." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000882 name: interilial region def: "Area of convergence of the ilial shafts. When the preacetabular ilium is narrow, the interilial configuration is V-shaped or narrowly rounded, whereas when the interilial region is broadly expanded the interilial configuration is U-shaped." [AAO:LAP] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000883 name: recessus coccygealis def: "Area dorsal to the pelvic girdle symphysis, between the dorsal portions of the ilial corpora, where lies the posterior terminus of the urostyle." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000774 ! ilial shaft property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000884 name: epipubis def: "Small prepubic element formed by a plate of cartilage (which may calcify in the adult) that is synchondrotically united with the pubis." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000885 name: obsolete Nobelian bone def: "Paired cartilaginous rods that lie within the copulatory organ (or so-called tail) and are attached to the posteroventral part of the pelvic girdle." [AAO:LAP] synonym: "postpubis" RELATED [] is_obsolete: true replaced_by: UBERON:3010240 [Term] id: UBERON:3000886 name: ypsiloid cartilage def: "Y-shaped cartilage lying in the middle line, anterior to the pubo-ischium with which it articulates. It lies dorsal to the rectus abdominis muscle with which it articulates." [AAO:LAP] synonym: "abdominal sternum" RELATED [UBERON:3000886] synonym: "cartilago epipubes" RELATED [UBERON:3000886] synonym: "cartilago marsupial" RELATED [UBERON:3000886] synonym: "cartilago ypsiloidea" RELATED [UBERON:3000886] synonym: "cartilago ypsiloides" RELATED [UBERON:3000886] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000894 name: femoral ridge def: "Low crest that arises just behind the acetabular head and extends distally for about one-third the length of the femoral shaft." [AAO:LAP] synonym: "crista femoris" RELATED [UBERON:3000894] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000895 name: obsolete trochlear groove of femur def: "Canal on the posteroventral surface of the femoral head, which articulates with the ischial process on the rim of the acetabulum." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000896 name: foveal depression def: "Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted." [AAO:LAP] is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0006767 ! head of femur property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000898 name: trochanteric crest def: "Paired ridges on the ventral surface of the femoral shaft that run toward the femoral trochanter; the posterior crest is less developed." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000903 name: tibial crest def: "Ridge that arises from the dorso-masial side of the extensor surface of the tibia. It receives the insertion of the tendon of the extensor ilio-tibialis muscle." [AAO:LAP] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000979 ! tibia property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000904 name: apophysis distalis of tibiofibula def: "Swelling on the extensor surface of the distal head of the tibiofibula." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006714 ! tibiofibula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000905 name: caput ossis cruris def: "Proximal head of the tibiofibula that articulates with the distal head of the femur." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006714 ! tibiofibula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000906 name: sulcus pro musculo extensori cruris brevis def: "Small canal on the proximal head of to the tibiofibula, lateral to the apophysis distalis, for the insertion of the cruris brevis muscle." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006714 ! tibiofibula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000907 name: eminentia arcuata def: "Small crest on the extensor surface of the proximal head of the tibiofibula (tibial side)." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006714 ! tibiofibula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000908 name: sulcus distalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the distal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006714 ! tibiofibula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000909 name: sulcus proximalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the proximal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006714 ! tibiofibula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000910 name: obsolete hind limb opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000911 name: foramen nutritium exterius def: "Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula." [AAO:LAP] is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0006714 ! tibiofibula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000915 name: spatium intertarsale def: "Separation of the tibiale and fibulare along their longitudinal axia." [AAO:LAP] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004454 ! tarsal region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000916 name: apophysis proximalis def: "Swelling on the extensor surface of the proximal compound head of the tibiale and fibulare." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000917 name: apophysis distalis of tibiale fibulare def: "Swelling on the extensor surface of the distal compound head of the tibiale and fibulare." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000921 name: element Y of hind mesopodium def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] is_a: UBERON:0015050 ! tarsus endochondral element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000922 name: prehallux skeleton def: "One to three or four elements located ventral and medial to the metatarsal of digit I. When more than one elements are present, they are smaller than the proximal prehallux." [AAO:LAP] synonym: "prehallux" BROAD [] is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: part_of UBERON:0012136 ! prehallux property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). It was modified by cjm in the following way: the class was relabeled from 'prepollex' to 'prepollex skeleton', to distinguish it from the digit-like structure which it is a part of. It was re-classified from bone to subdivision of skeleton, as it may in fact be composed of multiple individual bones. TODO: definition needs reviewed, and it still requires placement under the UBERON:0012136 ! prehallux" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000931 name: intercalary element of hind digit def: "Small elements present in all digits of the pes, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally." [AAO:LAP] is_a: UBERON:0004248 ! pedal digit bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000934 name: foramen perforans tarsi def: "Small opening between the centrale and fibulare that allows the perforans tarsi artery to pass from the ventral to the dorsal side of the ankle." [AAO:LAP] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000935 name: obsolete scapular area def: "Dorso-lateral portion of the pectoral girdle." [AAO:LAP] synonym: "pars scapularis" RELATED [UBERON:3000935] synonym: "scapula et adscapulum" RELATED [UBERON:3000935] synonym: "scapula-suprascapula area" RELATED [UBERON:3000935] synonym: "scapulum et episcapulum" RELATED [UBERON:3000935] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0006849 [Term] id: UBERON:3000936 name: zonal element def: "All those parts of the pectoral girdle in the central region of the zonal area." [AAO:LAP] is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:3000757 ! zonal area property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000937 name: prezonal element def: "All those parts of the pectoral girdle that lie anterior to the zonal area." [AAO:LAP] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:3000757 ! zonal area property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000938 name: postzonal element def: "All those parts of the pectoral girdle that lies posterior to the zonal area." [AAO:LAP] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:3000757 ! zonal area property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000941 name: arciferal girdle def: "Pectoral girdle in which the epicoracoid cartilages are elaborated into posteriorly directed epicoracoid horns. Most arciferal pectoral girdles are characterized by fusion of the epicoracoid cartilages in the interclavicle region. Posterior to the clavicles, the epicoracoids usually are free and overlapping." [AAO:LAP] is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000942 name: firmisternal girdle def: "Pectoral girdle that lacks epicoracoid horns. The sternum is fused to the pectoral arch, and the epicoracoid cartilages of each half of the girdle are fused to one another. The midzonal length of the girdle is shorter than that of an arciferal girdle, but pre- and postzonal elements tend to be longer." [AAO:LAP] is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000943 name: pseudofirmisternal girdle def: "Modified arciferal pectoral girdle in which the fusion of the epicoracoid cartilages in the interclavicle region is extended posteriorly. Thus, the cartilages no longer overlap freely, and functionally a partially firmisternal condition is created." [AAO:LAP] is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000944 name: pseudoarciferal girdle def: "Modified firmisternal pectoral girdle in which the epicoracoid cartilages are partly free and overlapping; however, the epicoracoids are fused to one another and the sternum postermodially." [AAO:LAP] is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000945 name: inscriptional rib def: "Three pairs of cartilaginous elements posterior to the sternum that lie in the myosepta of the ventral trunk musculature." [AAO:LAP] synonym: "abdominal ribs" RELATED [UBERON:3000945] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000938 ! postzonal element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000948 name: articular process def: "Paired processes located on the anterior end of the cricoid cartilage." [AAO:LAP] synonym: "processus articularis anterior" RELATED [UBERON:3000948] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000949 name: posterior ramus of cleithrum def: "Laminar subdivision of the cleithrum that extends along the ventral (lateral) midbody of the suprascapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004741 ! cleithrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000950 name: os triangulare def: "Small, broadly triangular bar of bone lying across the ventral side of the pharynx at the junction of the M. genio-hyoideus and the M. rectus cervicis superficialis." [AAO:Francis_1934] synonym: "basi-branchial II" RELATED [UBERON:3000950] synonym: "os thyroideum" RELATED [UBERON:3000950] synonym: "os triquetum" RELATED [UBERON:3000950] synonym: "sternum" RELATED [UBERON:3000950] synonym: "urohyal" RELATED [UBERON:3000950] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000951 name: anterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. These elements contitute the hypohyals." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000952 name: posterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. They arise secondarily during metamorphosis, and are therefore not strictly part of the visceral skeleton." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000953 name: ceratobranchials II--IV def: "Paired bars that articulate with hypobranchial II. Reduction of loss of these elements is common in salamanders." [AAO:LAP] synonym: "epibranchials" RELATED [UBERON:3000953] is_a: UBERON:2002103 ! ceratobranchial series relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000954 name: hypobranchial I def: "Paired bar that articulates with basibranchial I. It forms the anterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000955 name: ceratobranchial I def: "Paired bar that articulates with, or is fused to, hypobranchial I. It forms the posterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] synonym: "epibranchial" RELATED [UBERON:3000955] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000956 name: hypobranchial II def: "Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV." [AAO:Duellman_and_Trueb_1994] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000957 name: obsolete basihyal def: "Paired, anterior element that articulates medially with basibranchial I and posterolaterally with the paired hypohyals." [AAO:LAP] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true consider: UBERON:0011614 [Term] id: UBERON:3000961 name: external integument structure def: "Structures of the dermis, epidermis, glands and pigment cells recognizable on the external surfaces of the integument." [AAO:EJS] comment: Not clear how this differs from parent class. See https://github.com/obophenotype/uberon/issues/1305 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002199 ! integument property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000965 name: basale commune (carpal) def: "Amalgamation of distal carpals 1 and 2." [AAO:EJS] is_a: UBERON:0001481 ! distal carpal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000966 name: angulosplenial def: "Dermal bone of anuran lower jaw investing lingual and ventral surfaces of Meckel's cartilage; forming coronoid process and articulating with palatoquadrate posteriorly." [AAO:EJS] synonym: "angular" RELATED [UBERON:3000966] synonym: "goniale" RELATED [UBERON:3000966] is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000969 name: obsolete larval skeletal system comment: redundant with stage+skeletal system. Can be properly reinstated if needed. property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3000972 name: head external integument structure def: "Dermal, epidermal, glandular and pigment structures of the external head integument." [AAO:EJS] is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0000033 ! head property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000977 name: body external integument structure def: "Dermal, epidermal, glandular and pigment structures of the body integument." [AAO:EJS] is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0002100 ! trunk property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000981 name: limb external integument structure def: "Dermal, epidermal, glandular and pigment structures of the limb integument." [AAO:EJS] is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0002101 ! limb property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000982 name: tail external integument structure def: "Dermal, epidermal, glandular and pigment structures of the tail integument." [AAO:EJS] is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0007812 ! post-anal tail property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000989 name: pectoral fold is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000991 name: dorsal folds is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000992 name: obsolete principal cavity def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:EJS] is_obsolete: true replaced_by: UBERON:3000089 [Term] id: UBERON:3000993 name: otic and occipital is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3010013 ! larval chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000994 name: longitudinal dorsal folds is_a: UBERON:3000991 ! dorsal folds property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000995 name: transversal dorsal folds is_a: UBERON:3000991 ! dorsal folds property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000998 name: suprarostral cartilage def: "Larval upper jaws articulate with trabecular horns." [AAO:EJS] is_a: UBERON:0003933 ! cranial cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001708 ! jaw skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000999 name: dorsal pouch is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001000 name: obsolete palatoquadrate and suspensorium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3001001 name: obsolete lateral line receptor organ property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0008904 [Term] id: UBERON:3001002 name: basale commune (tarsal) def: "Amalgamation of distal tarsals 1 and 2." [AAO:EJS] is_a: UBERON:0010721 ! distal tarsal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001003 name: cloacal fold is_a: UBERON:3000977 ! body external integument structure relationship: part_of UBERON:0000162 ! cloaca property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001005 name: dorsolateral fold is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001007 name: body granules is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001008 name: body wart is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001009 name: body spicule is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001010 name: body tubercle is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010005 name: obsolete muscular process property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010006 name: dorsal skin texture is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010007 name: pit organ alt_id: UBERON:3010823 def: "Mechanoreceptive organ of the lateral line, smaller than neuromasts, they are located on the surface of the epidermis. These receptors receive afferent and efferent innervation." [AAO:EJS] is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010010 name: ventral skin texture is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010011 name: axillary glands is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010013 name: larval chondrocranium def: "Cartilaginous larval skull." [AAO:EJS] is_a: UBERON:0010323 ! cranial skeletal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010014 name: inguinal glands is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010018 name: M. glutaeus magnus def: "Originates from the superior process of the ilium and inserts on the aponeuronis of the M. cruralis." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010021 name: dorsal glands is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010022 name: M. tensor fasciae latae def: "Originates on the ventro-lateral aspect of the ala ossis ilei and the ventral surface of the iliacus externus. Inserts on the lateral surface of the cruralis, the dorso-lateral surface of the gluteus magnus, and on the aponeurosis of the cruralis." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010027 name: M. sartorius def: "Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010029 name: obsolete gonochoristic organism def: "Multi-cellular organism that has male and female sexes." [AAO:BJB] xref: CARO:0000048 "gonochoristic organism" property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010031 name: ventral glands is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010032 name: M. semitendinosus def: "Originates by two tendons: one on the postero-ventral aspect of the pelvic rim, the other, a dorsal tendon from the postero-dorsal pelvic rim under the ventral edge of M. semimembranosus. Inserts on the ventral surface of the tibiofibula." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010039 name: protandrous hermaphroditic organism def: "Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex." [AAO:BJB] is_a: UBERON:0010895 ! sequential hermaphroditic organism property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010042 name: protogynous hermaphroditic organism def: "Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex." [AAO:BJB] is_a: UBERON:0010895 ! sequential hermaphroditic organism property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010044 name: dorsal crest is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010045 name: centrale 1 def: "Distal-most centrale when two are present." [AAO:EJS] is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010047 name: M. quadratus femoris def: "Originates on the ventro-lateral border of the ischium and inserts on the ventro-medial surface of the femur at the base of caput femoris." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010049 name: M. gemellus def: "Originates from the dorso-lateral margin of the ischium and inserts on the medial surface of the femur." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010058 name: dermal annular fold def: "A dermal fold surrounding the body reflecting body segmentation. Found in Caecilians." [ISBN:080184780X] synonym: "annuli" BROAD OMO:0003004 [AAO:0010058] synonym: "annulus" BROAD [] synonym: "caecilian annulus" EXACT [] is_a: UBERON:3000977 ! body external integument structure [Term] id: UBERON:3010060 name: centrale (fore) def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0012131 ! centrale property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010061 name: anterior quadratocranial commissure def: "Cartilage that bridges palatoquadrate to ethmoid region." [AAO:EJS] is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010065 name: M. gracilis major def: "Originates by a broad tendon from the postero-ventral surface of the pelvic rim and inserts by two tendons. One broad tendon inserts on the knee aponeurosis, and in part on the ventro-medial surface of the tibiofibula. The other long tendon inserts on the posterior surface of the tibiofibula just below the proximal head." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010067 name: M. gracilis minor def: "Originates from the pelvic rim just ventral to the anus and merges with M. gracilis major. M. gracilis minor also attaches to the skin." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010068 name: M. semimembranosus def: "Originates on the ventro-lateral surface of the ischium below the anus and inserts on the ventro-medial aspect of the femur and the head of the tibiofibula by a stout tendon, which is formed by the ventral origin of the plantaris longus." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010069 name: intermedium (fore) def: "Quadrangular cartilage or bone lying between the preaxial radiale and the postaxial ulnare in the proximal level of the mesopodium." [AAO:EJS] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009880 ! carpal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010070 name: M. ileo-fibularis def: "Originates from the ventral border of the ala ossis ilei just posterior to the origin of M. glutaeus maximus. Insterts in the aponeurosis covering the knee joint." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010071 name: cranial crest is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010072 name: M. pyriformis def: "Originates on the dorso-lateral border of the distal urostyle and inserts on the dorsal surface of the crista femoris. This muscle inserts between the M. ilio-fibularis/M. glutaeus magnus and M. semimembranosus." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010073 name: centrale 2 def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010074 name: M. ileo-femoralis def: "Originates from the postero-ventral surface of the ala ossis ilei and from the insertion tendon of M. ileo-fibularis. Inserts along the dorso-medial border of the femur." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010075 name: tympanic fold is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010076 name: M. iliacus internus def: "Muscle originates on the ventral border of the ala ossis ilei to insert on the dorso-medial surface of the femur." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010078 name: M. iliacus externus def: "Originates on the ventral and lateral surfaces of the ala ossis ilei and inserts on the postero-dorsal face of the caput femoris." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010079 name: upper eyelid protuberances is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001712 ! upper eyelid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010080 name: snout protuberances is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010081 name: interorbital fold is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010082 name: M. pulmonum proprius def: "Originates along the connective tissue covering the dorsal surface of the lung and inserts on the dorsal surface of the femur. Muscle found only in Pipa." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010084 name: M. tibialis posticus def: "Originates on the entire medial surface of the shaft of the tibiofibula. Inserts on the tibiale by a long tendon proximo-lateral to the insertion of the medial belly of M. tibialis anticus longus." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010085 name: postrictal protuberances is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010087 name: M. tibialis anticus longus def: "Originates on the ventro-lateral surface of the medial condyle of the femur. Its tendon extends in a groove over the knee in the lateral surface of the tibiofibular head, and penetrates the M. peroneus tendon. Insertion is by a lateral and medial head on the dorso-lateral surface of the fibulare and the medial border of the proximal end of the tibiale respectively." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010089 name: M. extensor cruris brevis def: "Originates by a slender tendon from the ventral surface of the medial condyle of the femur and passes over the knee to insert as a fleshy belly on the ventro-lateral surface of the tibiofibula." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010090 name: M. tibialis anticus brevis def: "Originates from the dorso-lateral surface of the tibiofibula and inserts on the proximo-medial surface of the tibiale dorsal to the medial head of M. tibialis anticus longus." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010091 name: upper lip protuberances is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001834 ! upper lip property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010092 name: basitrabecular process def: "A process of the otic capsule that will bridge to the palatoquadrate basal process." [AAO:EJS] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:4200139 ! palatoquadrate element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010093 name: villosities def: "Small hair or nipple like projection on the integument." [DOI:10.1525/9780520331563] is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010094 name: quadratoethmoid process def: "Process that projects from anterior margin of commissure as site of attachment for quadratoethmoid ligament." [AAO:EJS] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3010061 ! anterior quadratocranial commissure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010096 name: vocal sac is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010097 name: M. tarsalis posticus def: "Originates on the medial border of the ligamentum calcanei and inserts along the ventral surface of the tibiale." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010098 name: M. plantaris profundus def: "Originates on the medial half of the ligamentum calcanei and inserts along the dorsal surface of the aponeurosis plantaris and extends to the level of the base of the prehallux." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010099 name: obsolete musculus rectus superior def: "Cranial nerve III innervated; dorsal in the rectus group." [AAO:EJS] is_obsolete: true replaced_by: UBERON:0006323 [Term] id: UBERON:3010100 name: mental gland is_a: UBERON:3010604 ! cranial glands property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010101 name: obsolete musculus rectus inferior def: "Cranial nerve III innervated; ventral in the rectus group." [AAO:EJS] is_obsolete: true replaced_by: UBERON:0006322 [Term] id: UBERON:3010103 name: vocal sac glands is_a: UBERON:3010604 ! cranial glands property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010104 name: pectoral glands is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010105 name: anterodorsal lateral line nerve (ADLLN) def: "Sensory nerve of the anterior lateral line component. It develops from the preotic anterodorsal placode. ADLLN branches into two rami innervating orbital lines of neuromasts." [AAO:SIQ] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010106 name: tympanic papilla is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010109 name: anteroventral lateral line nerve (AVLLN) def: "Sensory nerve of the anterior lateral line component. It develops from preotic anteroventral placode. AVLLN innervates lower jaw lines of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010113 name: obsolete musculus rectus medialis def: "Cranial nerve III innervated; medial in the rectus group." [AAO:EJS] is_obsolete: true replaced_by: UBERON:0001602 [Term] id: UBERON:3010115 name: posterior lateral line nerve (PLLN) def: "Sensory nerve of the posterior lateral line component. It develops from de postotic posterior placode. PLLN innervates the trunk lines of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010116 name: obsolete lower eyelid texture property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010117 name: obsolete musculus obliquus inferior def: "Cranial nerve III innverated; ventral in the obliquus group." [AAO:EJS] is_obsolete: true replaced_by: UBERON:0006320 [Term] id: UBERON:3010118 name: quadrato-orbital commissure def: "Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate." [AAO:EJS] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:4200139 ! palatoquadrate element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010123 name: finger fringes is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002389 ! manual digit property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010124 name: toe fringes is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010125 name: musculus levator bulbi def: "Cranial nerve V innervated; ventral to the eye." [AAO:EJS] is_a: UBERON:0001601 ! extra-ocular muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010126 name: middle lateral line nerve (MLLN) def: "Sensory nerve of the posterior lateral line component. It develops from the postotic middle placode. MLLN innervates neuromasts located over the otic capsule and the suprabranchial line of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010127 name: fringe on postaxial edge of finger IV comment: Kok & Castroviejo-Fisher (2008) Zootaxa. is_a: UBERON:3010123 ! finger fringes property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010128 name: taeniae tecti marginalis def: "Compose lateral rim of frontoparietal fenestra, ventrally confluent with orbital cartilages, posteriorly confluent with tectum synoticum." [AAO:EJS] is_a: UBERON:0003932 ! cartilage element of chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010130 name: taenia tecti transversalis def: "Cartilaginous connection that partitions frontoparietal fenestra into anterior and posterior regions. Often persists form larva into adults." [AAO:EJS] is_a: UBERON:0003932 ! cartilage element of chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010131 name: orbital cartilages def: "Forms lateral walls of braincase, confluent posteriorly with otic capsules via taenia tecti marginalis and anteriorly with lamina orbitonasalis via sphenethmoid commissure." [AAO:EJS] is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0001703 ! neurocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010132 name: taenia tecti medialis def: "Cartilaginous connection between the taenia tecti transversalis to the tectum synoticum, and subdividing the parietal fenestra into left and right fenestrae. Often persist from larva to adult." [PHENOSCAPE] is_a: UBERON:0003932 ! cartilage element of chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010136 name: M. cruralis def: "Originates from the anterior surface of the hip joint capsule between the iliacus internus and the pectineus. Inserts by an aponeurosis attaching to the condyles of the femur and on the head of the cruris. This continues over the cruris to cover the tibialis anticus longus and peroneus to insert on the dorsal surface of those muscles." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010137 name: obsolete trabecular plate def: "Ventral plate anterior to and confluent with ethmoid plate." [AAO:EJS] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0011242 [Term] id: UBERON:3010138 name: trabecular horn def: "Anterior extensions." [AAO:curator] synonym: "trabecular horns" RELATED [UBERON:3010138] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011241 ! ethmoid region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010142 name: occipital arch def: "Posterior chondrocranium forming ventral and lateral margins of foramen magnum, medial to otic capsules." [AAO:EJS] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:3000993 ! otic and occipital property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010144 name: odontoids def: "Toothlike processes found on the mandible of some anurans; can be formed by dentary or dentary + mentomeckelian bones; odontoids lack enamel and dentine present in true teeth." [AAO:EJS] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001710 ! lower jaw region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010145 name: obsolete otic operculum def: "Plate of cartilage occluding fenestra ovalis." [AAO:EJS] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:3010728 [Term] id: UBERON:3010146 name: obsolete lacrimal def: "OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS] comment: The synonym of this term has been merged into 'lacrimal bone'. synonym: "ectethmoid" RELATED [UBERON:3010146] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2804" xsd:string is_obsolete: true replaced_by: UBERON:0001680 [Term] id: UBERON:3010156 name: obsolete middle cavity is_obsolete: true replaced_by: UBERON:3000087 [Term] id: UBERON:3010159 name: obsolete olfactory receptor cell is_obsolete: true replaced_by: CL:0000207 [Term] id: UBERON:3010160 name: obsolete supporting cell comment: replaced with 'olfactory epithelium support cell' due to axiom (removed) that it was part of olfactory epithelium. is_obsolete: true replaced_by: CL:0000853 [Term] id: UBERON:3010161 name: obsolete olfactory basal cell comment: Obsoleted as it had no definition or logical axiom beyond being placed as an 'olfactory 'epithelium', which is incorrect for a cell (should be part of). If a definition is found we can rescuscitate this class.[UBERON:cjm] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010163 name: metacarpal fold comment: Kok & Castroviejo-Fisher (2008) Zootaxa. is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0004453 ! metacarpus region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010164 name: ulnar fold comment: Kok & Castroviejo-Fisher (2008) Zootaxa. is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002103 ! hindlimb property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010166 name: fringe on postaxial edge of toe V comment: Kok & Castroviejo-Fisher (2008) Zootaxa. is_a: UBERON:3010124 ! toe fringes property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010167 name: metatarsal fold comment: Kok & Castroviejo-Fisher (2008) Zootaxa. is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0000983 ! metatarsus region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010168 name: tarsal fringe comment: Kok & Castroviejo-Fisher (2008) Zootaxa. is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0004454 ! tarsal region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010170 name: ungual flap is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010172 name: subarticular tubercles def: "Is a integumentary structure located on the ventral surface of the hand and/or foot. Found at the junction between, in the hand, the metacarpal and most proximal phalanx of the digit and between phalanges, and in the foot between the metatarsal and most proximal phalanx of the digit and between phalanges." [PHENOSCAPE] is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010173 name: supernumerary tubercles is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010175 name: circumferential groove is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010177 name: obsolete nuptial pads property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010178 name: finger glands is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010179 name: web glands is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010181 name: humeral glands is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010182 name: tibial glands is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010183 name: femoral glands is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010184 name: inner metatarsal tubercle is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010186 name: outer metatarsal tubercle is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010187 name: inner metacarpal tubercle synonym: "thenar tubercle" RELATED [UBERON:3010187] is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010188 name: outer metacarpal tubercle synonym: "palmar tubercle" RELATED [UBERON:3010188] is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010189 name: ulnar protuberances is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002103 ! hindlimb property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010190 name: tibial protuberances is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002103 ! hindlimb property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010191 name: calcar anterior is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010192 name: calcar posterior is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010193 name: prepollical protuberances is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0005880 ! prepollex property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010194 name: mediale def: "A recurrent variant of salamanders; a rhomboidal cartilage lying immediately postaxial from the centrale or centrale 1." [AAO:EJS] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010195 name: lateral appendix def: "A small lateral diverticulum of the nasal cavity found in anuran larvae." [AAO:EJS] is_a: UBERON:0000064 ! organ part property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010197 name: lateral recess def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010200 name: vasculature of respiratory integument def: "Blood vessels in respiratory skin." [AAO:EJS] is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0002199 ! integument property_value: editor_note "Modified from the original AAO source" xsd:string property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010201 name: dorsal tail tubercle is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010202 name: tail base gland is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010203 name: dorsal tail fin is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010204 name: ventral tail fin is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010205 name: postminimus def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010209 name: keratinous claw is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010217 name: obsolete carotid def: "Either of two arteries which carry blood to the head." [AAO:BJB] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010218 name: obsolete external carotid def: "An artery which supplies blood to the muscles of the tongue and floor of the mouth via four major branches." [AAO:BJB] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010219 name: obsolete internal carotid def: "An artery which supplies the upper jaw and cranium." [AAO:BJB] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010220 name: obsolete orbital region def: "An anatomical cluster that is part of the cranium and structurally supports the eye." [AAO:EJS] is_obsolete: true replaced_by: UBERON:0001697 [Term] id: UBERON:3010224 name: obsolete vertebral property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true consider: UBERON:0010913 [Term] id: UBERON:3010226 name: postiliac glands is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010227 name: costal protuberances is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010229 name: costal grooves is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010231 name: costal folds is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010235 name: nuchal groove is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010239 name: subocular groove is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010240 name: Nobelian rod def: "Either of a pair of cartilaginous rods that support the intromittent organ of male Ascaphus, and are attached to the posteroventral part of the pelvic girdle." [AAO:EJS, http://orcid.org/0000-0002-6601-2165, http://purl.obolibrary.org/obo/uberon/tracker/200] synonym: "Nobelian bone" RELATED [] synonym: "Nobelian element" RELATED [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:3010260 ! intromittent organ (Ascaphus type) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010241 name: labial fold is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010242 name: nasolabial groove is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010243 name: ventricular musculature is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002082 ! cardiac ventricle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010256 name: obsolete spermatocyte alt_id: UBERON:3010302 is_obsolete: true replaced_by: CL:0000017 [Term] id: UBERON:3010259 name: phallodeum def: "Eversible phalloid portion of the cloaca that is inserted in the female's vent during copulation. Found in male Caecillians." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0008811 ! intromittent organ property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010260 name: intromittent organ (Ascaphus type) def: "A tail like posterior extension of the cloaca supported by a pair of Nobelian rods." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0008811 ! intromittent organ property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010262 name: capitulum of radio-ulna is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006715 ! radio-ulna property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010272 name: obsolete asexual organism def: "Multi-cellular organism that does not produce gametes." [AAO:BJB] xref: CARO:0000030 "asexual organism" property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010273 name: obsolete cell space def: "Anatomical space that is part of a cell." [AAO:BJB] xref: CARO:0000062 "cell space" property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010274 name: obsolete epithelial cell def: "Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity." [AAO:BJB] is_obsolete: true replaced_by: CL:0000066 [Term] id: UBERON:3010275 name: obsolete obsolete single cell organism def: "Cell that is an individual member of a species." [AAO:BJB] comment: TO DO: replace with new CARO term. is_obsolete: true [Term] id: UBERON:3010277 name: obsolete tip def: "Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage." [AAO:BJB] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010283 name: obsolete animal blastomere def: "Pigmented, smaller blastomere of the animal (upper) hemisphere of the cleaving embryo." [AAO:BJB] synonym: "micromere" RELATED [UBERON:3010283] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010284 name: obsolete vegetal blastomere def: "Unpigmented, larger blastomere of the vegetal (lower) hemisphere of the cleaving embryo." [AAO:BJB] synonym: "macromere" RELATED [UBERON:3010284] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010285 name: obsolete bottle cell def: "Cell type that is first to migrate inwards at the blastopore during gastrulation." [AAO:BJB] comment: replace with CL:0000020 once cl is released. property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010286 name: obsolete chondrocyte def: "Polymorphic cell type that forms cartilage." [AAO:BJB] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: CL:0000138 [Term] id: UBERON:3010287 name: obsolete ciliated cell synonym: "ciliated cell" BROAD [UBERON:3010287] is_obsolete: true replaced_by: CL:0000064 [Term] id: UBERON:3010288 name: obsolete fibroblast def: "A connective tissue cell that secretes an extracellular matrix rich in collagen and other macromolecules." [AAO:BJB] is_obsolete: true replaced_by: CL:0000057 [Term] id: UBERON:3010289 name: obsolete follicle cell is_obsolete: true replaced_by: CL:0000477 [Term] id: UBERON:3010290 name: obsolete germ line cell synonym: "germ line cells" RELATED [UBERON:3010290] is_obsolete: true replaced_by: CL:0000039 [Term] id: UBERON:3010291 name: obsolete gamete is_obsolete: true replaced_by: CL:0000300 [Term] id: UBERON:3010292 name: obsolete germ cell synonym: "germ cells" EXACT [UBERON:3010292] is_obsolete: true replaced_by: CL:0000586 [Term] id: UBERON:3010293 name: obsolete primordial germ cell def: "Primitive cell type that is involved in the reproduction of the organism beginning with the sexual differentiation of the gonads at NF stage 52. In males specifically, it migrates from the genital ridge cortical region into the medullary tissue, where it forms spermatogonia. In females it is embedded in the cortical region and multiplies as oogonia." [ISBN:0815318960] synonym: "PGC" EXACT [UBERON:3010293] synonym: "primitive germ cell" RELATED [UBERON:3010293] is_obsolete: true replaced_by: CL:0000670 [Term] id: UBERON:3010295 name: obsolete spermatozoon def: "A mature male germ cell that develops from a spermatid." [CL:0000019] synonym: "sperm" RELATED [UBERON:3010295] synonym: "spermatozoa" RELATED [UBERON:3010295] is_obsolete: true replaced_by: CL:0000019 [Term] id: UBERON:3010296 name: obsolete oocyte is_obsolete: true replaced_by: CL:0000023 [Term] id: UBERON:3010297 name: obsolete primary oogonium def: "A germ cell that is a primordial oocyte in a female and that develops into secondary oogonia by mitotic division." [XAO:EJS] synonym: "primary oogonia" RELATED [UBERON:3010297] is_obsolete: true replaced_by: CL:0000654 [Term] id: UBERON:3010298 name: obsolete primary spermatogonium def: "A germ cell that is a primordial spermatocyte in a male and that develops into secondary spermatogonia by mitotic division." [ISSN:0289-0003] synonym: "primary spermatogonia" RELATED [UBERON:3010298] is_obsolete: true replaced_by: CL:0000656 [Term] id: UBERON:3010299 name: obsolete secondary oogonium def: "A type of germ cell that results from the mitotic division of a primary oogonium." [XAO:EJS] synonym: "secondary oogonia" RELATED [UBERON:3010299] is_obsolete: true replaced_by: CL:0000655 [Term] id: UBERON:3010300 name: obsolete secondary spermatogonium def: "A type of germ cell that results from the mitotic division of a primary spermatogonium." [ISSN:0289-0003] synonym: "secondary spermatogonia" RELATED [UBERON:3010300] is_obsolete: true replaced_by: CL:0000657 [Term] id: UBERON:3010301 name: obsolete spermatid is_obsolete: true replaced_by: CL:0000018 [Term] id: UBERON:3010303 name: fasciculated network of fibrils synonym: "coelomic envelope" BROAD [UBERON:3010303] is_a: UBERON:0000478 ! extraembryonic structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010305 name: obsolete germinal vesicle synonym: "GV" EXACT [UBERON:3010305] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010306 name: obsolete mitochondrial aggregate def: "A large distinctive organelle aggregate comprised of mitochondria found in developing oocytes of many species. From Pepling et al. 2007." [PHENOSCAPE] synonym: "Balbiani body" EXACT [] synonym: "mitochondrial cloud" EXACT [] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: GO:0032019 [Term] id: UBERON:3010307 name: obsolete polar body is_obsolete: true replaced_by: CL:0002090 [Term] id: UBERON:3010308 name: obsolete lymphocyte def: "A cell of the B cell, T cell, or natural killer cell lineage." [AAO:BJB] is_obsolete: true replaced_by: CL:0000542 [Term] id: UBERON:3010309 name: obsolete B cell def: "A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive." [AAO:BJB] is_obsolete: true replaced_by: CL:0000236 [Term] id: UBERON:3010310 name: obsolete natural killer cell def: "A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [AAO:BJB] synonym: "NK cell" EXACT [UBERON:3010310] is_obsolete: true replaced_by: CL:0000623 [Term] id: UBERON:3010311 name: obsolete T cell def: "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [AAO:BJB] is_obsolete: true replaced_by: CL:0000084 [Term] id: UBERON:3010312 name: obsolete thymocyte def: "An immature T cell located in the thymus." [AAO:BJB] is_obsolete: true replaced_by: CL:0000893 [Term] id: UBERON:3010313 name: obsolete myoblast def: "Embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm." [AAO:BJB] is_obsolete: true replaced_by: CL:0000056 [Term] id: UBERON:3010314 name: obsolete abdominal myoblast def: "The myoblast that forms the muscles of the anterior abdominal walls." [UBERON:3010314] synonym: "abdominal musculature" RELATED [UBERON:3010314] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010315 name: obsolete neuron def: "Cell that is the basic unit of nervous tissue, each consisting of a body, an axon, and dendrites, and the purpose of which is to receive, conduct, and transmit impulses in the nervous system." [AAO:BJB] synonym: "nerve cell" RELATED [UBERON:3010315] is_obsolete: true replaced_by: CL:0000540 [Term] id: UBERON:3010317 name: obsolete pigment cell def: "Cell type that contains a deposition of coloring matter." [AAO:EJS] synonym: "chromatophore" RELATED [UBERON:3010317] is_obsolete: true replaced_by: CL:0000147 [Term] id: UBERON:3010318 name: obsolete iridophore def: "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color." [AAO:BJB] synonym: "guanophore" RELATED [UBERON:3010318] is_obsolete: true replaced_by: CL:0000431 [Term] id: UBERON:3010319 name: obsolete melanocyte def: "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [AAO:BJB] synonym: "melonophore" RELATED [UBERON:3010319] is_obsolete: true replaced_by: CL:0000148 [Term] id: UBERON:3010320 name: obsolete xanthophore def: "A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red." [AAO:BJB] is_obsolete: true replaced_by: CL:0000430 [Term] id: UBERON:3010321 name: obsolete podocyte def: "Cell type that is a component of the glomus." [AAO:BJB] is_obsolete: true replaced_by: CL:0000653 [Term] id: UBERON:3010322 name: obsolete stem cell def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [AAO:BJB] is_obsolete: true replaced_by: CL:0000034 [Term] id: UBERON:3010323 name: obsolete hematopoietic stem cell def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system." [AAO:BJB] comment: false synonym: "HSC" EXACT [UBERON:3010323] is_obsolete: true replaced_by: CL:0000037 [Term] id: UBERON:3010324 name: obsolete zygote def: "Diploid cell produced by the fusion of sperm cell nucleus and egg cell." [AAO:BJB] synonym: "fertilized egg" EXACT [UBERON:3010324] is_obsolete: true replaced_by: CL:0000365 [Term] id: UBERON:3010325 name: obsolete animal hemisphere synonym: "animal" RELATED [UBERON:3010325] is_obsolete: true replaced_by: UBERON:0012284 [Term] id: UBERON:3010326 name: obsolete blastocoel anlage def: "The first appearance of the antomical space that will become the blastocoel." [XAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010328 name: equatorial belt is_a: UBERON:0000479 ! tissue property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010329 name: obsolete perivitelline space property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010330 name: obsolete sperm entry point property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010331 name: obsolete vegetal hemisphere is_obsolete: true replaced_by: UBERON:0012285 [Term] id: UBERON:3010333 name: obsolete germ plasm property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010334 name: obsolete vegetal yolk mass property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010346 name: obsolete globe synonym: "eye ball" EXACT [UBERON:3010346] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0010230 [Term] id: UBERON:3010350 name: obsolete pigment layer comment: replaced with pigment epithelium of eye because was previously asserted to be part of a camera-type eye. is_obsolete: true replaced_by: UBERON:0007625 [Term] id: UBERON:3010369 name: obsolete branchial arch skeleton def: "Skeletal and cartilaginous elements of the branchial arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first branchial arch, or the third pharyngeal arch, but some authors do not follow this convention." [PMID:8589427] synonym: "gill arch skeleton" RELATED [UBERON:3010369] synonym: "Pharyngeal arch skeleton 3-7>" RELATED [UBERON:3010369] synonym: "visceral arch skeleton" RELATED [UBERON:3010369] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010377 name: unicellular gland is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010379 name: inner fin tissue def: "Part of the fin consisting of a supporting core of mesenchyme and extracellular matrix." [PMID:15188431] synonym: "inner fin" BROAD [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002415 ! tail relationship: part_of UBERON:0008897 ! fin property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010380 name: outer fin tissue def: "Part of the fin consisting of flattened epidermal cells elevated into a keel-like structure." [PMID:15188431] comment: In frogs (Anura) the outer fin tissue is present only in tadpoles and sometimes during the embryogenesis of species without tadpoles. In salamanders and caecilians tail fins can persist into reproductive maturity. synonym: "outer fin" BROAD [] synonym: "outer tail fin" RELATED [] synonym: "tail fin" RELATED [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002415 ! tail relationship: part_of UBERON:0008897 ! fin property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010392 name: mesonephric early proximal tubule is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0000083 ! mesonephric tubule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010393 name: mesonephric late distal segment def: "The site of bicarbonate resorption in the adult kidney. It is equivalent to the convoluted distal segment of metanephric nephrons." [Xenbase] synonym: "DT1" EXACT [UBERON:3010393] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000083 ! mesonephric tubule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010394 name: mesonephric late proximal tubule synonym: "late proximal segment" EXACT [UBERON:3010394] synonym: "opisthonephros" RELATED [UBERON:3010394] synonym: "proximal straight segment" RELATED [UBERON:3010394] synonym: "proximal tubule 3" EXACT [UBERON:3010394] synonym: "PT3" EXACT [UBERON:3010394] is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0000083 ! mesonephric tubule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010398 name: obsolete follicle layer property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010404 name: capillary system of liver def: "The smallest of the blood vessels, parts of the microcirculation, of the liver." [XAO:curator] synonym: "liver capillary" EXACT [UBERON:3010404] is_a: UBERON:0001982 ! capillary is_a: UBERON:0015796 ! liver blood vessel property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010413 name: left channel of ventral aorta is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0003085 ! ventral aorta property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010417 name: posterior palatine artery is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010423 name: larval aorta is_a: UBERON:0000947 ! aorta property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010424 name: right channel of ventral aorta is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0003085 ! ventral aorta property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010428 name: obsolete portion of is_obsolete: true [Term] id: UBERON:3010431 name: archenteron floor is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010432 name: archenteron roof synonym: "gastrocoel roof" EXACT [UBERON:3010432] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010436 name: blastocoel roof is_a: UBERON:0002050 ! embryonic structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010437 name: post-anal gut is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0004735 ! archenteron property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010447 name: M. extensor digitorum communis longus def: "It arises on the lateral epicondyle of the humerus by two heads: the lateral one arises by a thin tendon in common with the m.extensor carpi ulnaris with fibers proximally fused. The internal one arises by a short tendon in common with proximally fused fibers of the m. extensor carpi radialis. It divides distally in two heads: the external head inserts with a long and thin tendon on the metacarpal V, at the same point of insertion of the m. abductor brevis dorsalis digiti V; the internal one inserts by a thin tendon on the proximal region of the metacarpal IV, between the m. extensor brevis superficialis digiti IV and the m. extensor brevis medius digiti IV (Pristimantis bogotensis)." [AAO:EJS] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010449 name: dorsal marginal zone def: "Marginal zone that is a key embryonic tissue region of the early gastrula stage embryo and that houses the Spemann-Mangold organizer." [ASD:BJB] synonym: "DMZ" EXACT [PMID:17368611] synonym: "organizer" RELATED [UBERON:3010449] synonym: "Spemann organizer" RELATED [UBERON:3010449] is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010450 name: dorso-lateral marginal zone is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010451 name: involuting marginal zone is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010452 name: non-involuting marginal zone is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010453 name: ventral marginal zone synonym: "VMZ" EXACT [UBERON:3010453] is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010454 name: ventro-lateral marginal zone is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010455 name: blastopore lip is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000100 ! blastopore property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010456 name: lower blastopore lip synonym: "ventral blastopore lip" RELATED [UBERON:3010456] is_a: UBERON:3010455 ! blastopore lip property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010457 name: upper blastopore lip synonym: "dorsal blastopore lip" RELATED [UBERON:3010457] synonym: "organizer" RELATED [UBERON:3010457] is_a: UBERON:3010455 ! blastopore lip property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010458 name: suprarostral ala synonym: "ala" BROAD [] synonym: "alae" RELATED OMO:0003004 [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000998 ! suprarostral cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010463 name: animal cap synonym: "animal ectoderm" RELATED [UBERON:3010463] xref: BTO:0004724 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010464 name: animal cap inner layer is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010465 name: animal cap outer layer is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010489 name: muscular artery def: "Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior." [AAO:BJB] is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001070 ! external carotid artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010494 name: lateral pretrosal artery def: "Part of the internal carotid which supplies blood to the ear and branches to two additional arteries." [AAO:BJB] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0020550 ! auricular blood vessel relationship: part_of UBERON:0001532 ! internal carotid artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010496 name: mandibular artery def: "Part of lateral pretrosal artery which supplies blood to the roof of the mouth." [AAO:BJB] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:3010494 ! lateral pretrosal artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010498 name: cutaneus artery def: "Artery which supplies blood to the thymus and parotoid region." [AAO:BJB] is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010499 name: coeliaco-mesenteric artery def: "This artery has many branches which supply blood to various organs in the viscus." [AAO:BJB] is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010500 name: gastrico-linealis def: "Major branch which supplies blood to the spleen and dorsal wall of the stomach." [AAO:BJB] is_a: UBERON:0003509 ! arterial blood vessel relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010501 name: duodeno-pancreatic artery def: "Major branch which supplies blood to pancreas and duodenum." [AAO:BJB] is_a: UBERON:0001637 ! artery relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010502 name: duodeno-hepatic artery def: "Major branch supplying blood via many smaller branches to the liver, duodenum, ventral wall of the stomach, and gall bladder." [AAO:BJB] is_a: UBERON:0001637 ! artery relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010503 name: oviduct artery def: "One of three arteries which are part of the renal artery supplying blood to the anterior, middle, and posterior parts of the oviduct." [AAO:BJB] is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001184 ! renal artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010506 name: postcaval vein def: "One of three major veins which enter the sinus venosus." [AAO:BJB] is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010507 name: precaval vein def: "Either of a pair of veins which enter on either side of the sinus venosus." [AAO:BJB] is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010515 name: lateral vein def: "Either of the veins which collect blood from the trunk and skin and drain into the subclavian vein." [AAO:BJB] is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010516 name: cutaneus magnus def: "Anterior part of the lateral vein." [AAO:BJB] is_a: UBERON:0001638 ! vein relationship: part_of UBERON:3010515 ! lateral vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010517 name: ventral abdominal vein def: "A vein formed by the combination of veins in the pelvic region which collects blood from the liver, stomach, intestines, and gall bladder." [AAO:BJB] is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0010194 ! hepatic portal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010519 name: Jacobson's vein def: "Either of a pair of veins which receives many small vesicles from the kidney and collects blood from the oviducal vein." [AAO:BJB] is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0010195 ! renal portal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010520 name: oviducal vein def: "Vein which collects blood from the oviduct." [AAO:EJS] is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0010195 ! renal portal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010523 name: M. plantaris longus def: "Originates by two heads, one from the dorso-distal border of the aponeurosis covering the knee and the other from two tendinous branches along the medial border of the knee joint. Inserts by a thick, broad tendon to form the aponeurosis plantaris." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010524 name: bronchial tube def: "Either of the short tubes which bifurcate posteriorly from the trachea and lead into the lungs." [AAO:BJB] is_a: UBERON:0000489 ! cavitated compound organ relationship: part_of UBERON:0001004 ! respiratory system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010525 name: frontoparietal fenestra is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010528 name: articular process of palatoquadrate is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010529 name: ovisac alt_id: UBERON:3010782 def: "Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles." [AAO:BJB] is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! ovary relationship: part_of UBERON:0000993 ! oviduct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010530 name: obsolete mesorchium def: "A thin membrane which attaches the testes to the kidneys and supports the efferent ductules from the testes to the kidneys." [AAO:BJB] is_obsolete: true replaced_by: UBERON:0011879 [Term] id: UBERON:3010538 name: obsolete pars nervosa def: "Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance." [AAO:BJB] is_obsolete: true replaced_by: UBERON:0003217 [Term] id: UBERON:3010541 name: median pars intermedia def: "Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores." [AAO:BJB] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002196 ! adenohypophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010543 name: obsolete bilateral pars tuberalis is_obsolete: true replaced_by: UBERON:0002433 [Term] id: UBERON:3010552 name: obsolete gastrula cell def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [AAO:BJB] is_obsolete: true replaced_by: CL:0000361 [Term] id: UBERON:3010553 name: obsolete blastoderm cell def: "An undifferentiated cell produced by early cleavages of the fertilized egg (zygote)." [AAO:BJB] is_obsolete: true replaced_by: CL:0000353 [Term] id: UBERON:3010554 name: obsolete ectodermal cell def: "A cell of the outer of the three germ layers of the embryo." [AAO:BJB] synonym: "ectoderm cell" RELATED [UBERON:3010554] is_obsolete: true replaced_by: CL:0000221 [Term] id: UBERON:3010555 name: obsolete endodermal cell def: "A cell of the inner of the three germ layers of the embryo." [AAO:BJB] synonym: "endoderm cell" RELATED [UBERON:3010555] is_obsolete: true replaced_by: CL:0000223 [Term] id: UBERON:3010556 name: obsolete mesodermal cell def: "A cell of the middle germ layer of the embryo." [AAO:BJB] synonym: "mesoblast" RELATED [UBERON:3010556] synonym: "mesoderm cell" RELATED [UBERON:3010556] is_obsolete: true replaced_by: CL:0000222 [Term] id: UBERON:3010557 name: triangular process is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3010138 ! trabecular horn property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010558 name: quadrato-ethmoid ligament is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010559 name: retroarticular process of the palatoquadrate is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:4200139 ! palatoquadrate element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010560 name: anterior process of the palatoquadrate is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:4200139 ! palatoquadrate element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010562 name: suboccular foramen is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010563 name: craniopalatine foramen is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010564 name: carotid foramen is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010565 name: pila preoptica def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. Posterior to the pila preoptica is the pila antoptica between these two cartilages emerges the optic and trochlear nerves." [PHENOSCAPE] is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010566 name: prootic foramen is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010576 name: prenasal (amphibians) def: "A dermal bone that forms anterior to the premaxillae between the maxillae and articulates with the nasals posteriorly." [AAO:LT] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010583 name: basibranchial I def: "Bilaterally unpaired ventral element with which articulates with lateral paired elements." [AAO:DBW] synonym: "Copula I" RELATED [UBERON:3010583] is_a: UBERON:0004740 ! basibranchial bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010584 name: mandibular arch neural crest def: "Anterior most migratory stream of cranial neural crest." [AAO:EJS] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0003099 ! cranial neural crest property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010585 name: basibranchial II def: "Unpaired medial element that articulates with the anterior basibrachial I (if present)." [AAO:EJS] synonym: "Copula II" RELATED [UBERON:3010585] synonym: "urohyal" RELATED [UBERON:3010585] is_a: UBERON:0004740 ! basibranchial bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010586 name: vasa efferentia def: "Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney." [AAO:BMZ] xref: BTO:0002254 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006946 ! efferent duct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010587 name: hyoid arch neural crest def: "Population of cranial neural crest that give rise to hyoid arch elements." [AAO:EJS] is_a: UBERON:0002342 ! neural crest relationship: part_of UBERON:0003099 ! cranial neural crest property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010589 name: cloacal papilla def: "A small, ridge-like projection from the antero-ventral wall of the cloacal chamber." [AAO:BMZ] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000162 ! cloaca property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010590 name: amphibian cloacal gland def: "A structure that surrounds the cloacal opening, consisting of a mass of coarse tubules." [AAO:BMZ] is_a: UBERON:0012478 ! cloacal gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010593 name: obsolete erythrophore comment: Note that this class originally had axiom that it was part of the integument. However, the term had no definition and one can use the general erythrophore def from CL. is_obsolete: true replaced_by: CL:0000574 [Term] id: UBERON:3010599 name: stratum spongiosum is_a: UBERON:0002067 ! dermis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010602 name: granular gland def: "A gland that contains toxic secretions within the lumen. In frogs and salamanders, this is the larger of the two types of gland, the other being the mucuous gland[Kardong]." [ISBN10:0073040584, UBERON:cjm] synonym: "poison gland" BROAD [ISBN10:0073040584, UBERON:cjm] is_a: UBERON:0002530 ! gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010603 name: body gland is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010604 name: cranial glands is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010606 name: limb gland is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010612 name: obsolete sensory receptors property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0012451 [Term] id: UBERON:3010613 name: laryngo-tracheal chamber def: "Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid." [AAO:BMZ] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001737 ! larynx property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010614 name: cartilago lateralis of aryngo-tracheal chamber def: "A series of semicircular cartilages on the side of the laryngo-tracheal chamber." [AAO:BMZ] synonym: "cartilago lateralis" BROAD [] is_a: UBERON:0007844 ! cartilage element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010618 name: constrictor laryngis externus def: "Involved in the movement of the arytenoid cartilages; see also dilatator laryngis and constrictor laryngis anterior." [AAO:BMZ] synonym: "hyolaryngus" RELATED [UBERON:3010618] synonym: "sphincter anterior" RELATED [UBERON:3010618] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010620 name: dilatator laryngis def: "Involved in the movement of the arytenoid cartilages; see also constrictor laryngis externus and constrictor laryngis anterior." [AAO:BMZ] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010621 name: constrictor laryngis anterior def: "Involved in the movement of the arytenoid cartilages; see also constrictor laryngis externus and dilatator laryngis." [AAO:BMZ] synonym: "sphincter posterior" RELATED [UBERON:3010621] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010624 name: subarticular sesamoid alt_id: UBERON:3010674 def: "Is an endochondral structure located on the ventral to the junction between, in the hand, the metacarpal and most proximal phalanx of the digit and between phalanges, and in the foot between the metatarsal and most proximal phalanx of the digit and between phalanges. Typically subarticular sesamoids are found with the subarticular tubercles." [PHENOSCAPE] comment: to edit more later synonym: "subarticular sesamoids" RELATED [] is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0011141 ! appendicular ossicle is_a: UBERON:0012357 ! digitopodium bone relationship: part_of UBERON:0002544 ! digit property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010625 name: obsolete embryonic hypochord def: "A transient rod-like structure ventral to the notochord in salamander embryos. Derived from endoderm." [AAO:EJS] is_obsolete: true replaced_by: UBERON:0003058 [Term] id: UBERON:3010626 name: obsolete Merkel cell synonym: "Merkel cells" RELATED [UBERON:3010626] is_obsolete: true replaced_by: CL:0000242 [Term] id: UBERON:3010627 name: obsolete leydig cells def: "A type of mucus and/or fluid secreting cell in larvae." [AAO:BMZ] is_obsolete: true replaced_by: CL:0000178 [Term] id: UBERON:3010628 name: obsolete dorsal ramus of occulomotor nerve def: "Innervates m. rectus superior (m. dorsal rectus)." [AAO:EJS] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0015162 [Term] id: UBERON:3010629 name: obsolete sesamoid alt_id: UBERON:3010630 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0001479 [Term] id: UBERON:3010631 name: obsolete Stiftchenzellen def: "Possibly chemoreceptor cells in anuran larvae." [AAO:BMZ] comment: replace with CL_0007017 once CL is released. is_obsolete: true [Term] id: UBERON:3010632 name: obsolete ventral ramus of occulomotor nerve def: "Innervates m. rectus medialis, m. rectus inferior, m. obliquus inferior." [AAO:DSM] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0015161 [Term] id: UBERON:3010633 name: obsolete flask cell def: "Type of cell that appears in epidermis during metamorphosis and is rich in mitochondria." [AAO:BMZ] comment: replaced by CL_0007023 once cl is released. is_obsolete: true [Term] id: UBERON:3010635 name: obsolete goblet cell def: "A mucous surface cell type known in tadpoles of Xenopus." [AAO:BMZ] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: CL:0000160 [Term] id: UBERON:3010636 name: egg capsule def: "Protective membranes that surround amphibian embryos." [AAO:EJS] is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000478 ! extraembryonic structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010637 name: obsolete mucous surface cell def: "Type of mucous-producing cell that appears in early larval stages and persists after metamorphosis." [AAO:BMZ] comment: replace with CL_0007019 once cl is released. property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010638 name: obsolete ciliary cell def: "A type of cell that develops in embryos and functions in embryonic movements." [AAO:BMZ] comment: replace with CL_0007018 once cl is released. synonym: "ciliary cells" RELATED [UBERON:3010638] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010650 name: cephalodorsosubpharyngeus def: "Hyobranchial muscle used in swallowing." [AAO:BMZ] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010651 name: levator bulbi def: "One of the principal muscles used in swallowing." [AAO:BMZ] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010652 name: ramus nasalis lateralis def: "Ramule of ophthalmic nerve (see also ramus nasalis medialis). The first branch of ophthalmic nerve gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000348 ! ophthalmic nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010653 name: ramus nasalis medialis def: "Ramule of ophthalmic nerve (see also ramus nasalis lateralis). First branch gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000348 ! ophthalmic nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010654 name: rectus cervicis def: "Retracts the hyoid and, therefore, the tongue." [AAO:BMZ] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010657 name: subhyoideus def: "Hyobranchial muscle that is a deep, visceral muscle associated with tongue movement." [AAO:BMZ] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010659 name: subarcualis rectus I def: "Deep, visceral muscle associated with tongue movement." [AAO:BMZ] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010661 name: ramus nasalis internus def: "Distal part of the opthalmicus profundus gives rise to 2 ramules: palatinus and cutaneous." [AAO:EJS] is_a: UBERON:0000348 ! ophthalmic nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010664 name: m. intertransversarius capitus superior def: "Muscle of the neck involved in the movement of the head, see also m. intertransversarius capitis inferior." [AAO:BMZ] is_a: UBERON:0004465 ! musculature of neck property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010665 name: ramule palatinus def: "Ramules that descends towards the buccal roof and give rise to several short branches that anastomose with palatine ramus of the facial nerve." [AAO:EJS] is_a: UBERON:3010661 ! ramus nasalis internus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010667 name: m. intertransversarius capitis inferior def: "Muscle of the neck involved in the movement of the head, see also m. intertransversarius capitis superior." [AAO:BMZ] is_a: UBERON:0004465 ! musculature of neck property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010668 name: ramules cutaneous alt_id: UBERON:3010672 def: "Many branches of the maxillary ramus that terminate in the integument of the maxillary region." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000377 ! maxillary nerve relationship: part_of UBERON:3010661 ! ramus nasalis internus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010669 name: trunk maxillary-mandibularis def: "Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010671 name: ramule palatonasalis def: "Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve." [AAO:EJS] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000377 ! maxillary nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010673 name: m. rhomboideus anterior def: "Muscle which originates on the posterior surface of the frontoparietal and the anterior part of the dorsal fascia. Inserts on the ventral surface of the anteromedial corner of the suprascapula." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010675 name: bony nodule of terminal phalanx of hind digit def: "Endochondral element distal to terminal phalanx of hind digit." [AAO:EJS] synonym: "bony nodule" BROAD [] is_a: UBERON:0004248 ! pedal digit bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010682 name: proximal-most prepollical element def: "Is the proximal-most prepollical element." [PHENOSCAPE] is_a: UBERON:4200140 ! prepollical element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010683 name: distal-most prepollical element def: "Is the distal-most prepollical element." [PHENOSCAPE] is_a: UBERON:4200140 ! prepollical element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010684 name: proximal-most prehallical element is_a: UBERON:4200141 ! prehallical element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010685 name: distal-most prehallical element is_a: UBERON:4200141 ! prehallical element property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010690 name: fetal tooth def: "Type of deciduous dentition found in foetuses and altricial juveniles of some caecilians." [AAO:HM] synonym: "fetal teeth" EXACT [UBERON:3010690] is_a: UBERON:0007115 ! deciduous tooth property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010691 name: m. opercularis def: "Muscle which arises from the dorsal m. levator scapulae and extends between the operculum and suprascapula." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010692 name: m. cucullaris def: "Muscle which originates on the prootic and the otic ramus of the squamosal and inserts on the anterior border of the suprascapula." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010693 name: ramus posterior profundus of V3 def: "In the adult anuran, this innervates the muscles levator mandibulare internus and longus." [AAO:EJS] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000375 ! mandibular nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010694 name: m. rhomboideus posterior def: "Muscle which originates from the transverse process of presacral vertebrae IV and insert on the dorso-medial surface of the suprascapula." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010695 name: m. serratus superior def: "Muscle which originates from the transverse process of presacral vertebrae IV and inserts on the dorso-medial surface of the suprascapula beneath the insertion M. rhomboideus posterior." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010698 name: m. serratus medius def: "Muscle which originates from the transverse process of presacral vertebrae III and inserts on the central and medial surface of the suprascapula." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010699 name: m. serratus inferior def: "Muscle which originates as a posterior and anterior head. The posterior head originates from the transverse process and cartilaginous epiphysis of presacral vertebra IV. The anterior head originates on the same parts of presacral vertebrae III. Both insert on the medial surface of the suprascapula near its postero-ventral edge." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010700 name: levator mandibulae externus def: "Jaw muscle responsible for the closing of the jaw, and innervated by the mandibular nerve." [AAO:BMZ] is_a: UBERON:0011648 ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010701 name: m. latissimus dorsi def: "Muscle which originates from the ventral surface of the dorsal fascia and inserts on the deltoid crest of the humerus." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010704 name: levator mandibulae longus def: "Jaw muscle responsible for the closing of the jaw, and innvervated by ramus posterior profundus of V3." [AAO:BMZ] is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010705 name: obsolete lateral line receptor property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0008904 [Term] id: UBERON:3010706 name: lateral line nucleus is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010707 name: m. dorsalis scapulae def: "Muscle which originates on the lateral surface of the suprascapulae and inserts on the deltoid crest of the humerus." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010708 name: levator mandibulae articularis def: "Muscle which is responsible for the closing of the jaw, and is innervated by mandibular nerve." [AAO:BMZ] synonym: "m. adductor mandibulae anterior articularis" RELATED [UBERON:3010708] synonym: "m. adductor mandibulae externus minor" RELATED [UBERON:3010708] synonym: "m. adductor mandibulae posterior" RELATED [UBERON:3010708] synonym: "m. adductor mandibulae posterior articularis" RELATED [UBERON:3010708] is_a: UBERON:0011648 ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010709 name: levator mandibulae lateralis def: "Responsible for the closing of the jaw, and innvervated by the mandibular nerve." [AAO:BMZ] synonym: "m. adductor mandibulae posterior articularis" RELATED [UBERON:3010709] is_a: UBERON:0011648 ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010710 name: m. interscapularis def: "Muscle which originates from the ventro-medial surface of the suprascapula and inserts on the ventral surface of the scapula." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010711 name: levator mandibulae externus superficialis def: "Responsible for the closing of the jaw." [AAO:BMZ] is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010712 name: levator mandibulae externus profundus def: "Jaw muscle which is responsible for the closing of the jaw." [AAO:BMZ] is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010713 name: m. sternoepicoracoideus def: "Muscle which originates on the anterior border of the distal part of the sternal horn and inserts antero-medially on the postero-dorsal surface of the epicoracoid cartilage." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010717 name: obsolete diverticulum comment: obsoleted for an unknown reason property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010719 name: dilated medial process of metacarpal IV is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010720 name: ramus hyomandibularis def: "The posttrematic branch of the facial nerve, both motor and sensory in function." [AAO:CAM] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001647 ! facial nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010721 name: limb villosities is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010722 name: ramus palatinus def: "Sensory branch of facial nerve from palatal region." [AAO:CAM] is_a: UBERON:0001647 ! facial nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010724 name: levator quadrati def: "Responsible for the closing of the jaw, and innervated by the trigeminal nerve." [AAO:BMZ] is_a: UBERON:0011648 ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010725 name: M. coracoradialis def: "Muscle which originates from the omosternum and epicoracoid cartilage and inserts on the proximal radioulna." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010726 name: ramus muscularis of glossopharyngeus nerve def: "Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001649 ! glossopharyngeal nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010728 name: otic opercular element def: "Round, flat bone or cartilage that lies in the fenestra ovalis and articulates with the columella." [AAO:DBW] synonym: "otic operculum" EXACT [] is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0001690 ! ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010729 name: M. coracobrachialis longus def: "Muscle which originates as a long belly from the dorsal coracoid near the sternum and inserts on the shaft of the humerus." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010730 name: obsolete pterygoideus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0006720 [Term] id: UBERON:3010731 name: M. coracobrachialis brevis def: "Muscle which originates on the dorsal surface of the coracoid and scapula and inserts on the deltoid crest of the humerus." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010734 name: M. flexor carpi ulnaris def: "Muscle which originates from the medial condyle of the humerus and inserts on the carpus." [AAO:MEJ] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010735 name: ramus anterior of CN VIII def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010736 name: ramus posterior of CN VIII def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010737 name: M. palmaris longus def: "Originates from the medial epicondyle of the humerus and inserts on the palmar aponeurosis." [AAO:EJS] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010738 name: M. palmaris profundis def: "Originates on the ulnar aspect of the radioulna and inserts on the palmar aponeurosis." [AAO:EJS] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010739 name: M. flexor antibrachii medialis def: "Originates on the medial epicondyle of the humerus and inserts on the radial aspect of the radioulna." [AAO:EJS] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010740 name: ramus auricularis of the vagus nerve def: "An afferent branch of the vagus nerve." [AAO:EJS] is_a: UBERON:0001759 ! vagus nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010741 name: M. ulnocarpalis def: "Originates along distal third of the ulna and inserts on the ulnare." [AAO:EJS] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010742 name: interhyoideus posterior is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010743 name: M. flexor antibrachii lateralis superficialis def: "Originates as a superior and inferior head. The superior head originates on the outer edge of the humerus and the inferior head originates on the lateral epicondyle of the humerus. Both bellies converge to form a tendon, which inserts on the carpus and the extensor tendon of digit I." [AAO:EJS] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010744 name: M. flexor antibrachii lateralis profundus def: "Originates on the lateral epicondyle of the humerus and inserts on the lower ridge of the radioulna." [AAO:EJS] is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010745 name: M. coccygeosacralis def: "Originates on the lateral surface of the urostyle and inserts on the neural arch of the sacrum or on the sacral diapophysis." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010746 name: T-shaped terminal phalanx is_a: UBERON:0004300 ! distal phalanx property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010747 name: submentalis is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010748 name: M. coccygeoiliacus def: "Originates on the lateral surface of the urostyle and passes ventral to the sacral diapophysis to insert on the anterior and medial surfaces of the ilial shaft." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010749 name: M. iliolumbaris def: "Originates on the anterior and lateral aspect of the ilial shaft and inserts on the transverse processes of presacral vertebrae IV-VII." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010750 name: descending branch of the vagus nerve def: "Major branch of the vagus supplying parasympathetic innervation to viscera." [AAO:EJS] is_a: UBERON:0004293 ! parasympathetic nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001759 ! vagus nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010751 name: ramus muscularis of vagus nerve def: "Motor nervous branch of the vagus innervating m. subarcualis rectus I." [AAO:CAM] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:3010754 ! ramus recurrens property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010752 name: obsolete lobe property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3010754 name: ramus recurrens def: "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx." [AAO:EJS] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001759 ! vagus nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010757 name: ramus superficial ophthalmic def: "Dorsal branch of ADLLN that innervates supraorbital line of neuromasts." [AAO:EJS] is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010758 name: M. coccygeocutaneus def: "Originates from the posterior tip of the urostyle and inserts on the cloacal musculature and the overlying skin." [AAO:EJS] is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010759 name: ramus buccal def: "Ventral ramus of the ADLLN that innervates the infraorbital line of neuromasts." [AAO:EJS] is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010764 name: laryngeus ventralis def: "A branch of the vagus nerve innervating heart, stomach, and lung muscle." [AAO:CAM] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:3010754 ! ramus recurrens property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010765 name: ramus mandibularis externus def: "Runs together with motor fibers of the hyomandibular trunk of VII. The mandibularis externus of AVLLN branches into three ramules ." [AAO:SIQ] is_a: UBERON:3010109 ! anteroventral lateral line nerve (AVLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010770 name: dorsal sympathetic chain is_a: UBERON:0000407 ! sympathetic trunk property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010771 name: ventral sympathetic chain is_a: UBERON:0000407 ! sympathetic trunk property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010772 name: M. dorsalis trunci def: "Originates on the postero-dorsal edge of the postzygopophyses and insert on the dorsal surface of the neural arch of the posterior, adjacent vertebra." [AAO:EJS] is_a: UBERON:0008778 ! epaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010778 name: jugal ramule def: "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus." [AAO:SIQ] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010780 name: pars recta is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000993 ! oviduct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010781 name: pars convoluta of oviduct synonym: "pars convoluta" BROAD [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000993 ! oviduct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010783 name: m. oblique externus def: "Originates on the posterior margin of the suprascapula and the epaxial fascia and inserts ventrally on the lateral fascia of the M. rectus abdominus and the ilial shaft." [AAO:MEJ] is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010784 name: m. oblique internus def: "A muscular sheet in which the fibers run in right angles to those of the m. oblique externus, slanting downward anteriorly. This is one of three sheets composing the flank musculature." [AAO:BJB] is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010785 name: m. transversus is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010786 name: pars subvertebralis is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010787 name: pars transversalis is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010790 name: muscle rectus abdominis superficialis def: "A component of the rectus abdominal muscle that is some taxa." [PHENOSCAPE] is_a: UBERON:0002461 ! anterior abdominal wall muscle relationship: part_of UBERON:0002382 ! rectus abdominis muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010792 name: musculus rectus abdominis profundus def: "A component of the rectus abdominal muscle that is some taxa (see comment) forms a disctinct and separate muscle." [PHENOSCAPE] comment: In salamanders (Caudata) the m. rectus abdominis profundus is sometimes continuous with the m. rectus cervicis profundus. In extreme cases (family Plethodontidae) represents an undivided muscle that arises from the psoterior border of the ischium that proceds uninterrupted to the tongue pad. is_a: UBERON:0002461 ! anterior abdominal wall muscle relationship: part_of UBERON:0002382 ! rectus abdominis muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010793 name: m. ypsiloideus anterior def: "Hypaxial muscle in which contraction elevates the ypsiloid cartilage; originates from the anterior edge of the lateral process of the ypsiloid cartilage and insert on the anteriorly adjacent inscription." [AAO:BMZ] is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010794 name: oral ramule def: "Medial branch of the ramus mandibularis externus. This ramule innervates the oral and angular lines of neuromasts." [AAO:EJS] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010795 name: preopercular ramule def: "Ventral branch of the ramus mandibularis externus. This ramule have a superior and an inferior division, both innervating the preopercular line of neuromasts." [AAO:EJS] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010796 name: ramus supraotic def: "Small ramus of the MLLN that innervates neuromasts located at the posterior margin of the otic capsule." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010797 name: m. ypsiloideus posterior def: "Contraction depresses the ypsiloid cartilage; arises from the anterodorsal edge of the pubis deep to the m. rectus abdominis profundus and spreads anteriorly in a fan shape to insert on the lateral edges of the shaft and the posterior edges of the lateral processes of the ypsiloid cartilage ." [AAO:BMZ] is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010798 name: ramulus suprabranchialis anterior def: "Ramulus that innervates the suprabranchial line of neuromasts." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010799 name: ramulus suprabranchialis posterior def: "Ramulus innervating the suprabranchial line of neuromasts." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010801 name: ramus lateral def: "Ventral division of the trunk of the PLLN, this prominent ramus extends over the lateral trunk and caudal musculature innervating the lateral line of neuromasts." [AAO:SIQ] is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010802 name: courtship gland is_a: UBERON:3010604 ! cranial glands relationship: part_of UBERON:0001003 ! skin epidermis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010804 name: ramus ventral def: "This ramus leaves the postotic ganglionic complex together with the third branchial ramus of X. This ramule innervates the ventral line of neuromasts." [AAO:SIQ] is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010812 name: obsolete Dorsal tail tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:3010201 [Term] id: UBERON:3010813 name: vent glands is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010815 name: m. flexor indicis superficialis proprius def: "Originates on the internal border of the distal carpal 5-4-3 and inserts on the distal end of phalynx I." [AAO:MEJ] is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010818 name: hepatic peritoneum def: "Peritoneum that surrounds the liver." [AAO:JMG] is_a: UBERON:0002358 ! peritoneum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010819 name: gastrointestinal peritoneum def: "Peritoneum that surrounds the stomach and intestines." [AAO:JMG] is_a: UBERON:0002358 ! peritoneum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010820 name: suboccular arch is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010821 name: hyoquadrate process def: "A projection on the suboccular arch, ventral to the muscular process, that serves as the articulation point for the lateral process of the ceratohyal of the hyobranchial skeleton." [AAO:AMM] is_a: UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010824 name: processus triangularis of palatoquadrate cartilage synonym: "processus triangularis" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010827 name: anterior prenasal cartilage is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010828 name: commissura terminales of hyoid apparatus synonym: "commissura terminales" BROAD [] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010829 name: sulcus intermedius is_a: UBERON:0006846 ! surface groove property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010830 name: spicule is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0005884 ! hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010831 name: occipito-petrosal def: "Fusion of the occipital segment or occipital ring and otic capsule (Francis, 1934)." [AAO:EJS] synonym: "occipital-petrosal" EXACT [] synonym: "occipito-otic" RELATED [] synonym: "otic-occipital complex" RELATED [Phenoscape:DB] is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010832 name: occipital segment def: "Metameric segment forming the back of the skull." [AAO:EJS] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001676 ! occipital bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010836 name: posterolateral supplementary element def: "A muscle slip arising from the ventral surface of the mandible by means of the ligament near the site of mandibular articulation. The fibers pass anteromedially and attach upon the ventral surfaces of the principal element of the m. intermandibularis (Tyler, 1971)." [AAO:EJS] is_a: UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010837 name: apical supplementary element def: "A muscle slip arising from the lingual surface of the mandible on each side of the m. submentalis. The fibers pass posteromedially and attach upon the median raphe of the principal element (Tyler, 1971)." [AAO:EJS] is_a: UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010838 name: anterolateral supplementary element def: "A muscle slip arising from the lingual surface of the mandible on the anterior portion of the bone. The fibers pass anteriorly, parallel to the mandible, and attach upon the ventral surface of the m. submentalis (Tyler, 1971)." [AAO:EJS] is_a: UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010840 name: obsolete portion of cell substance def: "Portion of organism substance located within a cell." [AAO:BJB] xref: CARO:0000063 "portion of cell substance" property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true [Term] id: UBERON:3011040 name: first pancreatic bud synonym: "pancreas" BROAD [UBERON:3011040] is_a: UBERON:0002050 ! embryonic structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3011045 name: obsolete gasserian ganglion comment: Obsoleted as gasserian ganglion is an exact synonym to trigeminal ganglion per Wikipedia is_obsolete: true replaced_by: UBERON:0001675 [Term] id: UBERON:3011048 name: obsolete genital system def: "OBSOLETE Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs." [https://www.merriam-webster.com/dictionary/genitalia, XAO:0000142] comment: https://github.com/obophenotype/uberon/issues/2493 synonym: "genitalia" BROAD [] synonym: "reproductive system" BROAD [] property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0000990 [Term] id: UBERON:3011081 name: obsolete posterior cardinal vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} is_obsolete: true replaced_by: UBERON:0002065 [Term] id: UBERON:3011108 name: obsolete tympanum synonym: "tympanic membrane" EXACT [UBERON:3011108] is_obsolete: true replaced_by: UBERON:0002364 [Term] id: UBERON:3011120 name: early proximal tubule synonym: "PT2" EXACT [UBERON:3011120] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005309 ! pronephric nephron property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} creation_date: 2011-04-20T05:19:55Z [Term] id: UBERON:3011121 name: late distal segment is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0005309 ! pronephric nephron property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} creation_date: 2011-04-20T05:21:45Z [Term] id: UBERON:3011122 name: obsolete late proximal tubule is_obsolete: true replaced_by: UBERON:0009622 creation_date: 2011-04-20T05:22:49Z [Term] id: UBERON:4000002 name: obsolete mode of ossification def: "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance." [GOC:mtg_mpo, PMID:17572649] xref: GO:0001503 property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0001503 [Term] id: UBERON:4000003 name: permanent cartilage def: "Chondrogenic element that is composed of cartilage that is not replaced." [PSPUB:0000170] is_a: UBERON:0007844 ! cartilage element property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000004 name: obsolete opercle bone def: "Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone." [TAO:curator] comment: Term resides in TAO. property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: UBERON:2000250 [Term] id: UBERON:4000005 name: obsolete basihyal element comment: Term resides in TAO. property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: UBERON:0011614 [Term] id: UBERON:4000007 name: obsolete basihyal bone def: "Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch." [TAO:curator] comment: Term resides in TAO. property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: UBERON:0011618 [Term] id: UBERON:4000009 name: obsolete notochordal cell def: "Cell of the notochord, often vacuolated or resembles a chondrocyte." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007005 [Term] id: UBERON:4000010 name: obsolete notochordal mesodermal cell property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007006 [Term] id: UBERON:4000012 name: obsolete skeletogenic cell def: "Cell that has the potential to form a skeletal cell type (e.g., cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized)." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007001 [Term] id: UBERON:4000013 name: mineralized skeletal tissue def: "Skeletal tissue that is mineralized." [XAO:0004039, XAO:EJS] synonym: "mineralized tissue" BROAD [VSAO:0000013] xref: VSAO:0000013 xref: XAO:0004039 is_a: UBERON:0004755 ! skeletal tissue [Term] id: UBERON:4000014 name: obsolete basihyal cartilage def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch." [TAO:curator] comment: Term resides in TAO. property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: UBERON:0011615 [Term] id: UBERON:4000016 name: obsolete basihyal condensation property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true [Term] id: UBERON:4000018 name: obsolete ventral hyoid arch comment: Term resides in TAO. property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: UBERON:0011153 [Term] id: UBERON:4000019 name: obsolete chordablast def: "Epithelial cell that is large, vacuolated, and part of the notochord." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007008 [Term] id: UBERON:4000020 name: mineralized extracellular matrix def: "Extracellular matrix that is mineralized." [PSPUB:0000170] is_a: UBERON:0000479 ! tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000021 name: obsolete proteinaceous extracellular matrix def: "A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus. [GOC:mtg_sensu, ISBN:0198547684]." [GO_REF:0000034, GOC:mtg_sensu, ISBN:0198547684, VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0005578 [Term] id: UBERON:4000022 name: obsolete extracellular matrix def: "Combination of protein fibers, ground substance and tissue fluid; typically has embedded cells." [PSPUB:0000170] synonym: "ECM" EXACT [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0031012 [Term] id: UBERON:4000024 name: obsolete intercalar def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [TAO:curator] comment: Term resides in TAO. property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: UBERON:2000474 [Term] id: UBERON:4000028 name: integumentary papilla def: "Odontogenic papilla that is located in the integument." [PSPUB:0000170] synonym: "scale papilla" EXACT [VSAO:curator] is_a: UBERON:0001763 ! odontogenic papilla property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000030 name: oropharyngeal papilla def: "Odontogenic papilla located along the jaws or pharyngeal skeleton." [PSPUB:0000170] synonym: "oropharyngeal dental papilla" EXACT [VSAO:curator] is_a: UBERON:0001763 ! odontogenic papilla property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000038 name: obsolete preameloblast def: "Skeletogenic cell that has the potential to develop into an ameloblast." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007000 [Term] id: UBERON:4000039 name: obsolete chordoblast def: "Skeletogenic cell that is derived from the notochordal mesoderm and produces notochordal tissue (and cartilage tissue in some taxa)." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007008 [Term] id: UBERON:4000041 name: obsolete preodontoblast def: "Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a neural crest cell." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007003 [Term] id: UBERON:4000043 name: obsolete precementoblast def: "Skeletogenic cell that has the potential to develop into a cementoblast." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007002 [Term] id: UBERON:4000044 name: obsolete prechondroblast def: "Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007009 [Term] id: UBERON:4000045 name: obsolete preosteoblast def: "Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0007010 [Term] id: UBERON:4000051 name: lepidosteoid scale def: "Multi-layer ganoid scale composed of ganoine and cellular bone." [PSPUB:0000170] is_a: UBERON:4000052 ! ganoid scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000052 name: ganoid scale def: "Thick, rhomboid-shaped integumentary skeletal element composed of multiple tissues including ganoine and bone." [PSPUB:0000170] is_a: UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000053 name: vacuolated notochordal tissue def: "Connective tissue that is matrix-poor with large number of vacuolated cells." [PSPUB:0000170] synonym: "notochord proper" EXACT [VSAO:curator] is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002328 ! notochord property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000055 name: polypteroid scale def: "Multi-tissue structure composed of ganoine, dentine, elasmodine and cellular bone." [PSPUB:0000170] synonym: "polypterid scale" EXACT [VSAO:curator] is_a: UBERON:4000052 ! ganoid scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000059 name: avascular GAG-rich matrix def: "Proteinaceous extracellular matrix that is avascular and consists primarily of glycosaminoglycans." [PSPUB:0000170] synonym: "avascular glycosaminoglycan-rich matrix" EXACT [VSAO:curator] synonym: "cartilage matrix" EXACT [VSAO:curator] synonym: "cartilage-like matrix" EXACT [VSAO:curator] is_a: UBERON:0000479 ! tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000070 name: elasmoid scale def: "Multi-tissue integumentary element composed dentine, elasmodine, and hypermineralized tissue." [PSPUB:0000170] is_a: UBERON:0007380 ! dermal scale is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000074 name: palaeoniscoid scale def: "Multi-tissue structure composed of ganoine, dentine and bone; not known in extant taxa." [PSPUB:0000170] synonym: "Palaeoniscus-type scale" EXACT [VSAO:curator] is_a: UBERON:4000052 ! ganoid scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000077 name: non-mineralized chondroid tissue is_a: UBERON:0004755 ! skeletal tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000078 name: chondroid tissue def: "Skeletal tissue that is mineralized, has large chondrocyte-like cells, sparse extracellular matrix, and minimal perichondrium; develops from non-mineralized chondroid tissue." [PSPUB:0000170, TAO:curator] synonym: "chondroid bone tissue" EXACT [VSAO:curator] is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:4000077 ! non-mineralized chondroid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000080 name: keratin-based scale def: "Fold or elevation of the epidermis rich in keratin proteins; possibly calcified but does not contain skeletal elements." [PSPUB:0000170] is_a: UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000081 name: cosmoid scale def: "Multi-tissue integumentary element composed of enamel or enameloid, dentine and lamellar bone, and characterized by pore-canal system." [PSPUB:0000170] is_a: UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000086 name: secondary cartilage tissue def: "Cartilage tissue that is part of the exoskeleton, deposited adjacent to bone after bone formation." [PSPUB:0000170] is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0010364 ! dermal skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000087 name: cosmine synonym: "cosmoid scale tissue" EXACT [PSPUB:0000170] is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000088 name: mineralized cartilage tissue def: "Cartilage tissue that is mineralized." [PSPUB:0000170] is_a: UBERON:0002418 ! cartilage tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000090 name: integumentary skeleton def: "Skeletal subdivision that is part of the extra-oral dermal skeletal system that develops and remains invested within the integument, primarily the dermis." [PSPUB:0000170] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0010364 ! dermal skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000095 name: obsolete non-terminally differentiated odontoblast def: "Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell." [PSPUB:0000170] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:00007012 [Term] id: UBERON:4000096 name: obsolete terminally differentiated odontoblast def: "Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:00007013 [Term] id: UBERON:4000097 name: orthodentine def: "Odontoid tissue that typically contains tubules and is acellular." [PSPUB:0000170] is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000102 name: osteodentine is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000104 name: ganoine def: "Odontogenic tissue that is hypermineralized acellular, noncollagenous, covered by an epidermis and often deposited in multiple layers." [PSPUB:0000170] xref: MESH:C067951 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003585 ! dermis connective tissue is_a: UBERON:0010365 ! odontoid tissue relationship: part_of UBERON:4000052 ! ganoid scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000105 name: limiting layer of elasmoid scale def: "Hypermineralized tissue lacking collagen (except Sharpey's fibres), developing in close proximity to the basal cells of the overlying epithelium." [PSPUB:0000170] comment: Not clear if this layer is acellular, making a tissue type for now. is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:4000070 ! elasmoid scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000106 name: vasodentine def: "Dentine tissue that lacks dentine tubules and that is penetrated by blood capillaries." [PSPUB:0000170] synonym: "vascular dentine" EXACT [VSAO:curator] is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000107 name: elasmodine def: "Odontogenic tissue that consists of multiple layers of collagen fibers organized in orthogonal or twisted arrangements." [PSPUB:0000170] is_a: UBERON:0003585 ! dermis connective tissue is_a: UBERON:0010365 ! odontoid tissue relationship: part_of UBERON:4000070 ! elasmoid scale property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000108 name: non-mineralized hyaline cartilage tissue def: "Hyaline cartilage tissue that is not mineralized." [PSPUB:0000170] is_a: UBERON:0001994 ! hyaline cartilage tissue is_a: UBERON:0011589 ! non-mineralized cartilage tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000109 name: mineralized hyaline cartilage tissue def: "Hyaline cartilage tissue that is mineralized." [PSPUB:0000170] is_a: UBERON:0001994 ! hyaline cartilage tissue is_a: UBERON:4000013 ! mineralized skeletal tissue is_a: UBERON:4000088 ! mineralized cartilage tissue relationship: develops_from UBERON:0001994 ! hyaline cartilage tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000115 name: mineralized bone tissue def: "Bone tissue mineralized with hydroxyapatite." [PSPUB:0000170] is_a: UBERON:0002481 ! bone tissue is_a: UBERON:4000013 ! mineralized skeletal tissue relationship: develops_from UBERON:0008883 ! osteoid property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000116 name: obsolete terminally differentiated osteoblast def: "Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0001039 [Term] id: UBERON:4000117 name: obsolete non-terminally differentiated osteoblast def: "Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: CL:0001040 [Term] id: UBERON:4000118 name: cellular bone tissue def: "Mineralized bone tissue that always includes non-terminally differentiated osteoblasts and osteocytes." [PSPUB:0000170] is_a: UBERON:4000115 ! mineralized bone tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000119 name: non-mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is not mineralized." [PSPUB:0000170] synonym: "non-mineralized cartilage" EXACT [VSAO:curator] is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:0011589 ! non-mineralized cartilage tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000120 name: mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is mineralized." [PSPUB:0000170] is_a: UBERON:4000020 ! mineralized extracellular matrix is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:4000088 ! mineralized cartilage tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000122 name: acellular bone tissue def: "Mineralized bone tissue that has terminally differentiated osteoblasts but lacks osteocytes." [PSPUB:0000170] is_a: UBERON:4000115 ! mineralized bone tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000123 name: odontode tissue def: "Skeletal tissue that is avascular tubular mineralized matrix, primarily made of dentine that is deposited by odontoblasts that are excluded from the matrix; develops from pre-dentine tissue." [PSPUB:0000170] synonym: "dental tissue" RELATED [VSAO:curator] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010365 ! odontoid tissue relationship: develops_from UBERON:0011587 ! pre-dentine property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000134 name: ossified tendon def: "Sesamoid that develops within a tendon, distal to an articulation or joint." [PSPUB:0000169] synonym: "intratendonous ossification" RELATED [VSAO:0000134] is_a: UBERON:0001479 ! sesamoid bone property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000136 name: obsolete direct ossification def: "Ossification that does not require the replacement of pre-existing tissues, most often a cartilaginous model." [PSPUB:0000170] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0036072 [Term] id: UBERON:4000138 name: ligamentous replacement element def: "Replacement element that forms as a replacement of a ligament." [PSPUB:0000170] is_a: UBERON:0010522 ! replacement element property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000140 name: obsolete replacement ossification def: "Ossification that requires the replacement of a pre-existing tissue prior to bone tissue formation." [VSAO:curator] synonym: "indirect ossification" EXACT [VSAO:0000140] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0036075 [Term] id: UBERON:4000141 name: obsolete intramembranous ossification def: "Direct ossification that occurs within mesenchyme with the formation of an osteogenic condensation not associated with a perichondrium." [VSAO:curator] xref: GO:0001957 property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0001957 [Term] id: UBERON:4000142 name: obsolete metaplastic ossification def: "Direct ossification in which transformation of the pre-existing tissue occurs without dedifferentiation of cells or reinitiation of cell division; direct transformation of a non-bone tissue into a bone tissue." [VSAO:curator] synonym: "metaplasia" EXACT [VSAO:0000142] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0036074 [Term] id: UBERON:4000143 name: obsolete endochondral ossification def: "Replacement ossification wherein bone tissue replaces cartilage." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0001958 [Term] id: UBERON:4000144 name: obsolete perichondral ossification def: "Intramembranous ossification on the surface of a cartilage element as the perichondrium becomes a periosteum, without replacement of cartilage." [VSAO:curator] property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} is_obsolete: true replaced_by: GO:0036073 [Term] id: UBERON:4000146 name: transient cartilaginous element def: "Chondrogenic element that is composed of cartilage during development and has the potential to become replaced by another tissue." [PSPUB:0000170] synonym: "endochondral replacement cartilage" EXACT [VSAO:0000146] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0010363 ! endochondral element property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000159 name: ossified ligament def: "Sesamoid that develops within a ligament, distal to an articulation or joint." [GO_REF:0000034, PSPUB:0000169] is_a: UBERON:0001479 ! sesamoid bone property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000160 name: anocleithrum def: "Dermal bone of pectoral girdle that is dorsal to and articulates with the cleithrum." [VSAO:curator] comment: In sarcopterygians; analogous in position to postcleithrum in actinopterygians. synonym: "anocleithra" EXACT OMO:0003004 [VSAO:0000160] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000162 name: median fin def: "Fin that is an unpaired fin located in the sagittal plane of the organism." [TAO:curator] synonym: "nageoire impaire" EXACT [PSPUB:0000164] synonym: "périssoptérygie" EXACT [PSPUB:0000140] xref: ZFA:0005597 is_a: UBERON:0008897 ! fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000163 name: anal fin def: "Median fin that is located posterior to the anus." [TAO:curator] synonym: "nageoire anale" EXACT [PSPUB:0000164] synonym: "proctoptère" EXACT [PSPUB:0000136] synonym: "proctoptérygie" EXACT [PAPUB:0000142, PSPUB:0000140] xref: BTO:0004652 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001162 is_a: UBERON:4000162 ! median fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000164 name: caudal fin def: "The caudal fin is the most posterior median fin. It is composed of a complex of modified centra and modified neural and hemal arches and spines." [Phenoscape:PM] synonym: "nageoire caudale" EXACT [PSPUB:0000164] synonym: "tail" RELATED [VSAO:0000164] synonym: "tail fin" RELATED [VSAO:0000164] synonym: "uroptère" EXACT [PSPUB:0000135] synonym: "uroptérygie" EXACT [PSPUB:0000140] xref: BTO:0001827 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001058 is_a: UBERON:4000162 ! median fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000166 name: anal fin skeleton def: "Median fin skeleton that is located posterior to the anus." [TAO:curator] xref: ZFA:0000167 is_a: UBERON:4000170 ! median fin skeleton relationship: part_of UBERON:4000163 ! anal fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000167 name: caudal fin skeleton def: "Median fin skeleton supporting the caudal fin." [TAO:curator] xref: ZFA:0000862 is_a: UBERON:4000170 ! median fin skeleton relationship: part_of UBERON:4000164 ! caudal fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000168 name: dorsal fin skeleton def: "Median fin skeleton located on the dorsal surface of the organism." [TAO:curator] xref: ZFA:0001124 is_a: UBERON:4000170 ! median fin skeleton relationship: part_of UBERON:0003097 ! dorsal fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000170 name: median fin skeleton def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:curator] synonym: "axial fin skeleton" EXACT [VSAO:0000170] synonym: "unpaired fin skeleton" EXACT [VSAO:0000170] xref: ZFA:0001123 is_a: UBERON:0012353 ! fin skeleton relationship: part_of UBERON:4000162 ! median fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000171 name: scapular complex def: "Skeletal subdivision of dermal bones that may include the anterolateral plate (AL), the spinal process (Sp), and anteroventral plate (AV) and other dermal bones that are part of the pectoral girdle." [VSAO:curator] comment: A scapular complex is described in placoderms (Goujet and Young, 1995). synonym: "pectoral complex" BROAD [ISBN:3-89937-052-X] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000172 name: lepidotrichium def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [TAO:curator] comment: Need to review develops_from relationship to actinotrichia. Lepidotrichia require actinotrichia for development, but develops_from may not be appropriate relationship. See Zhang et al 2010 for details. doi:10.1038/nature09137 synonym: "fin ray" BROAD [VSAO:0000172] xref: ZFA:0001554 is_a: UBERON:0008907 ! dermal bone is_a: UBERON:4300037 ! bony fin ray relationship: develops_from UBERON:2000089 ! actinotrichium property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000173 name: pelvic fin lepidotrichium def: "Lepidotrichium that is part of the pelvic fin skeleton." [TAO:curator] synonym: "pelvic fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000173] synonym: "pelvic fin ray" NARROW [VSAO:0000173] xref: ZFA:0001552 is_a: UBERON:0010742 ! bone of pelvic complex is_a: UBERON:4440011 ! paired fin lepidotrichium relationship: part_of UBERON:0010711 ! pelvic fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000174 name: caudal fin lepidotrichium def: "Lepidotrichium that is part of the caudal fin skeleton." [TAO:curator] synonym: "caudal fin ray" NARROW [VSAO:0000174] xref: ZFA:0001550 is_a: UBERON:4500008 ! median fin lepidotrichium relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000175 name: pectoral fin lepidotrichium def: "Lepidotrichium that is part of the pectoral fin skeleton." [TAO:curator] comment: Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. synonym: "pectoral fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000175] synonym: "pectoral fin ray" NARROW [VSAO:0000175] xref: ZFA:0001551 is_a: UBERON:0010741 ! bone of pectoral complex is_a: UBERON:4440011 ! paired fin lepidotrichium relationship: part_of UBERON:0010710 ! pectoral fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000176 name: anal fin lepidotrichium def: "Lepidotrichium that is part of the anal fin skeleton." [TAO:curator] synonym: "anal fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000176] synonym: "anal fin ray" NARROW [VSAO:0000176] xref: ZFA:0001421 is_a: UBERON:4500008 ! median fin lepidotrichium relationship: part_of UBERON:4000166 ! anal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000177 name: dorsal fin lepidotrichium def: "Lepidotrichium that is part of the dorsal fin skeleton." [TAO:curator] synonym: "dorsal fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000177] synonym: "dorsal fin ray" NARROW [VSAO:0000177] xref: ZFA:0001418 is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:4500008 ! median fin lepidotrichium relationship: part_of UBERON:4000168 ! dorsal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000182 name: suprabranchial fin def: "Paired fin that is a bilaterally paired anterior outgrowth located high on the side of the animal, not far behind the orbit, with the posterior extremity corresponding with the expected posterior end of the branchial region." [PSPUB:0000172] comment: Suprabranchial fins are anterior outgrowths from the cephalothorax of thelodonts. Typically scale covered. They do not appear to contain skeletal tissues or elements. is_a: UBERON:0002534 ! paired fin property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4100000 name: skeletal element projection def: "Anatomical projection that is composed of bone or cartilage tissue." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0004765 ! skeletal element [Term] id: UBERON:4100001 name: obsolete astragalus-calcaneum unit def: "Anatomical cluster that is an osteological unit consisting of the astragalus and calcaneum." [PHENOSCAPE:ni] comment: TO DO: add astragalus after it has been added. is_obsolete: true [Term] id: UBERON:4100002 name: obsolete ectepicondylar flange def: "Flange on the dorsal part of the humerus, associated with extensor musculature of the forelimb (manus. carpus)." [PHENOSCAPE:ni] is_obsolete: true [Term] id: UBERON:4100003 name: articular surface def: "Anatomical surface that is part of a skeletal element and articulates with another skeletal element." [PHENOSCAPE:NI] comment: Not necessarily part of a joint. is_a: UBERON:0006984 ! anatomical surface relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004765 ! skeletal element [Term] id: UBERON:4100004 name: ischial peduncle def: "Bony projection (peduncle) that is located on the posterior portion of the ilium, posterior to the acetabulum." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:4100005 name: second phalanx def: "Second most proximal phalanx in manual or pedal digits." [PHENOSCAPE] comment: Consider merging with 'intermediate phalanx' is_a: UBERON:0003221 ! phalanx [Term] id: UBERON:4100006 name: parasternal process def: "Posterior projection of the interclavicle that extends betwen and sometimes beyond the clavicles." [PHENOSCAPE:AD] synonym: "posterior stalk of intercalvicle" EXACT [] synonym: "posterior stem of interclavicle" EXACT [] is_a: UBERON:0011655 ! interclavicle relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 [Term] id: UBERON:4100007 name: pectoral articular facet def: "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995)." [PHENOSCAPE:pm] comment: Should be part of some joint. is_a: UBERON:4100003 ! articular surface relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] id: UBERON:4100008 name: obsolete pedal claws def: "OBSOLETE Claws on the pes." [PHENOSCAPE] comment: Term is redundant with 'nail of pedal digit' (UBERON:0009567). property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1699" xsd:string is_obsolete: true replaced_by: UBERON:0009567 [Term] id: UBERON:4100009 name: pedal digit 7 phalanx def: "Phalanx of the 7th pedal digit." [PHENOSCAPE:AD] is_a: UBERON:0001449 ! phalanx of pes relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0012137 ! pedal digit 7 [Term] id: UBERON:4100010 name: post-glenoid process def: "Distinct notch ventral to the glenoid." [PHENOSCAPE:NI] comment: Fix def'n is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] id: UBERON:4100011 name: postacetabular buttress def: "A bony process at the distal margin of the acetabulum formed by the ischium and/or the ischial peduncle of the ilium." [PHENOSCAPE:AD] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001269 ! acetabular part of hip bone [Term] id: UBERON:4100012 name: postacetabular zone def: "Region of the ilium posterior and dorsal to the acetabulum." [PHENOSCAPE:AD] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4100013 name: postcoracoid def: "The posterior of the two coracoid elements found in basal tetrapods. Corresponds directly to the 'coracoid' of synapsids." [PHENOSCAPE:AD] is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001421 ! pectoral girdle region [Term] id: UBERON:4100014 name: posterior dorsal fin def: "Dorsal fin located posterior to the anterior dorsal fin." [PHENOSCAPE:WD] is_a: UBERON:0003097 ! dorsal fin relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 [Term] id: UBERON:4100015 name: obsolete posterior iliac process def: "Posterior most of the two 'double heads' of the blade of the ilium in some take. Distinct and separate for the dorsal iliac process." [PHENOSCAPE:AD] is_obsolete: true [Term] id: UBERON:4100016 name: posterior process of ilium def: "A posteriorly directed bony projection from the ilium that is the attachment site of the iliofibularis muscle (see Sumida, 1997)." [PHENOSCAPE:AD] synonym: "posterior iliac process" RELATED [] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4100100 name: parasphenoid flange def: "Lateral expansion of the parasphenoid." [PHENOSCAPE:BC] synonym: "parasphenoid wing" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004745 ! parasphenoid [Term] id: UBERON:4100111 name: hemipenal sheath alt_id: UBERON:0017158 def: "Soft tissue sheath covering the hemipenis." [PHENOSCAPE:NI] synonym: "hemipenial sheath" EXACT [] synonym: "sheath of hemipenis" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0008812 ! hemipenis [Term] id: UBERON:4100112 name: radial facet def: "Facet to accommodate the radius on the distal end of the humerus." [PHENOSCAPE:NI] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4100113 name: dermal intracranial joint def: "Hinge in the skull skeleton to allow for kinetic movement of different parts." [PHENOSCAPE:NI] is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 [Term] id: UBERON:4100114 name: anterior distal condyle of femur def: "Anatomical projection in the distal region of the femur." [PHENOSCAPE:NI] is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4100115 name: spiracular notch def: "Soft tissue notch/opening lying on a spiracle." [PHENOSCAPE:NI] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004704 ! bone fossa [Term] id: UBERON:4100116 name: posterior distal condyle of femur def: "Anatomical projection in the posterior/distal region of the femur." [PHENOSCAPE:NI] is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4100117 name: presacral rib def: "Rib located anterior to the sacral region." [PHENOSCAPE:NI] is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 [Term] id: UBERON:4100118 name: trunk rib def: "Rib located in the trunk (ribcage) area (i.e. excluding cervical and caudal axial series." [PHENOSCAPE:NI] is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 [Term] id: UBERON:4100119 name: extratemporal bone def: "Extratemporal bone: Skull bone in the posterior half of the cranium, bordering the squamosal and opercular." [PHENOSCAPE:NI] synonym: "postspiracular" EXACT [] is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: UBERON:4100120 name: obsolete prezygapophyses def: "Anteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets." [PHENOSCAPE:NI] is_obsolete: true replaced_by: UBERON:0001079 [Term] id: UBERON:4100121 name: thagomizer def: "The distinctive arrangement of four to ten spikes on the tails of stegosaurid dinosaurs. These spikes are believed to have been a defensive measure against predators." [https://en.wikipedia.org/wiki/Thagomizer] comment: The arrangement of spikes originally had no distinct name; the term Thagomizer was coined in 1982 by cartoonist Gary Larson in his comic 'The Far Side', and thereafter became gradually adopted as an informal term within scientific circles, research, and education. {xref="https://en.wikipedia.org/wiki/Thagomizer"} synonym: "tail spikes" BROAD [] is_a: UBERON:0034768 ! morphological feature relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:4200000 name: medial blade of ilium def: "The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues." [PHENOSCAPE:ad] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0010746 ! iliac blade [Term] id: UBERON:4200001 name: postpubis def: "The region of the pubis posterior to the acetabulum." [PHENOSCAPE] comment: In some non-avian reptile this terminology refers to a distinct rear facing process of the pubis. In avians and some closely related theropod taxa this term is used to denote the pubis itself which has been rotated to face backwards. is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis [Term] id: UBERON:4200002 name: coracoid plate def: "Broad, convex expansion of the coracoid bone below the level of the glenoid. Based on Romer 1956." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004743 ! coracoid bone [Term] id: UBERON:4200003 name: archipterygial fin def: "A type of pectoral fin in which the endoskeletal elements have a main axis that runs through the center of the fin. This creates a bilaterally symmetrical fin. (Modified from Kardong 2012)." [PHENOSCAPE] comment: Is homologous to the tetrapod limb. is_a: UBERON:0000151 ! pectoral fin relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200004 name: intertrochanteric fossa def: "Depression on the ventreal side of the femoral head. Associated with the pubioischiofemoralis externus muscle." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200005 name: obsolete postbranchial lamina def: "Medial facing projection or surface on the anterior ( cranial) region of the cleithrum that is often textured or denticled. This process has two primary functions: 1) its shape enhances the vertical strength of the cleithrum and 2) it forms the edge of the gill chamber and helps to direct water after it has passed over the gills (modified from Clack 2012)." [PHENOSCAPE] is_obsolete: true [Term] id: UBERON:4200006 name: infraglenoid buttress def: "An anatomical projection ventral to the glenoid fossa on the scapulocoracoid that abuts on the cliethrum (if present)." [PHENOSCAPE] comment: Can exist in taxa without a cleithrum. is_a: UBERON:0000064 ! organ part is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] id: UBERON:4200007 name: transverse pelvic ridge def: "The transverse pelvic ridge is a short crest directly anterior to, and not extending posterior to, the prominent supra-acetabular buttress from Pawley and Warren 2006." [PHENOSCAPE] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200008 name: inter-clavicle joint def: "Joint that articulates left and right clavicles." [PHENOSCAPE] synonym: "interclavicle joint" EXACT [] xref: PHENOSCAPE:wd is_a: UBERON:0008114 ! joint of girdle relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200009 name: hypochordal lepidotrichium def: "Caudal fin lepidotrichium located ventral to the notochord." [PHENOSCAPE] xref: PHENOSCAPE:wd is_a: UBERON:4000174 ! caudal fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200010 name: ventral humeral ridge def: "A distinct bony ridge on ventralsurface of the humeral shaft that corresponds to the attachment site of the pectoralis muscle." [PHENOSCAPE] synonym: "pectoral process" RELATED [] xref: PHENOSCAPE:ad is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200011 name: pedal centrale def: "A centrale found in the pes." [PHENOSCAPE] synonym: "navicular bone of pes" BROAD [] xref: PHENOSCAPE:AD is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200012 name: ectepicondylar flange def: "Flange present of the distal region of the humerus, associated with extensor musculature of forelimb." [PHENOSCAPE] xref: PHENOSCAPE:ni is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus [Term] id: UBERON:4200013 name: flexor surface def: "Surface of a long bone that possess the flexor muscle attachment sites." [PHENOSCAPE] xref: PHENOSCAPE:ni is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:4200014 name: lateral tuber of ulna def: "Projection on the lateral side of proximal part of the ulna." [PHENOSCAPE:NI] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001424 ! ulna [Term] id: UBERON:4200015 name: inner digits of foot def: "The medial most digits of the pes." [PHENOSCAPE] comment: In most tetrapods this corresponds to digits II-IV, but the exact identiy of digits in this region varies taxonomically based on digit numbering. xref: PHENOSCAPE:ad is_a: UBERON:0005445 ! segment of pes relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0012142 ! pedal digitopodium region [Term] id: UBERON:4200016 name: postbranchial lamina def: "Medial facing projection or surface on the anterior ( cranial) region of the cleithrum that is often textured or denticled. This process has two primary functions: 1) its shape enhances the vertical strength of the cleithrum and 2) it forms the edge of the gill chamber and helps to direct water after it has passed over the gills (modified from Clack 2012)." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:4200017 name: obsolete infraglenoid buttress def: "An anatomical projection venteral to the glenoid fossa on the scapulocoracoid that abuts on the cliethrum." [PHENOSCAPE] xref: PHENOSCAPE:ad is_obsolete: true [Term] id: UBERON:4200018 name: calcaneal tuber def: "An enlargement of the distal region of the calcaneum that corresponds to the attachment site for the foot extensor muscles." [PHENOSCAPE] xref: PHENOSCAPE:ad is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:4200019 name: preacetabular process def: "Process on ilium located anteriorly to acetabulum." [PHENOSCAPE] xref: PHENOSCAPE:ad is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200020 name: suprascapular fossa def: "Fossa on the medial surface on the scapula above the glenoid." [PHENOSCAPE] xref: PHENOSCAPE:ad is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:4200021 name: astragalus-calcaneum unit def: "Osteological unit consisting of the astragalus and calcaneum." [PHENOSCAPE] xref: PHENOSCAPE:NI is_a: UBERON:0000075 ! subdivision of skeletal system relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:4200022 name: extracleithrum def: "Narrow bone that lies ventral to the level of insertion of the pectoral fin and is sutured to the posterior edges of both the clavicle and cleithrum. Based on Forey 1998." [PHENOSCAPE] comment: The presence of this bone is a synapomorphy of coelacanth fishes. is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200023 name: anterior dorsal fin def: "A dorsal fin located anterior to posterior dorsal fin." [PHENOSCAPE:WD] is_a: UBERON:0003097 ! dorsal fin relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200024 name: obsolete suprascapular fossa def: "Fossa located on the medial surface of the scapula above the glenoid." [PHENOSCAPE] is_obsolete: true [Term] id: UBERON:4200025 name: ascending process of the astragalus def: "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly." [PHENOSCAPE:NI] xref: PHENOSCAPE:NI is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200026 name: supraglenoid foramen def: "Foramen that perforates supraglenoid buttress." [PHENOSCAPE] is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:4200027 ! supraglenoid buttress [Term] id: UBERON:4200027 name: supraglenoid buttress def: "A bony projection dorsal to the glenoid articulation on the scapulocoracoid." [PHENOSCAPE] comment: In basal tetrapodomorphs this structure braces the scapula on the cleithrum, but this function is lost in derived tetrapods. is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] id: UBERON:4200028 name: adductor blade def: "A prominent ridge in basal tetrapods on the ventral side of the femur that includes the fourth trochater, internal trochanter and the adductor crest (based on Coates, 1996)." [PHENOSCAPE:AD] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200029 name: adductor crest def: "A bony crest on venteral side of femur that is the attachment site for the adductor muscles." [PHENOSCAPE:AD] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:4200028 ! adductor blade [Term] id: UBERON:4200030 name: antitrochanter def: "Raised surface at the posterior portion of the acetabulum (see Nesbitt, 2011)." [PHENOSCAPE:NI] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001269 ! acetabular part of hip bone [Term] id: UBERON:4200031 name: caudalipuboischiotibialis def: "Muscle that is associated with tail flexion. Orginates on one of the first post sacral vertebrae posteriorly and inserts on the posterior edge of the m.puboischiotibialis. (modified from Duellman and Trueb 1994)." [PHENOSCAPE] comment: To Do: add attachment site terms to ext is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200032 name: clavicle blade def: "Expanded and flattened ventral region of clavicle bone." [PHENOSCAPE] is_a: UBERON:0005055 ! zone of long bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200033 name: cleithrum head def: "Expanded dorsal region of the cleithrum." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:4200034 name: cnemial crest def: "Longitudnal bony ridge on tibia, attachment site of the major extensor muscle of the hind limb." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000979 ! tibia [Term] id: UBERON:4200036 name: internal trochanter def: "A boney projection on the internal diaphysis of the femur anterior or medial to the intertrochanteric fossa, below the femoral head. Muscle attachment site for ventral muscle mass notably the puboischiofemoralis externus. Modified from Romer 1956." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200037 name: supinator process def: "A bony process that corresponds to the attachment site for the forelimb supinator muscles in tetrapods, distal to the deltopectoral crest and anterior to the radial condyle." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200038 name: subscapular fossa def: "A marked depression on the medial side of the scapula blade, often opposite the glenoid region." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:4200039 name: supraacetabular buttress def: "A bony protuberance dorsal to the acetabulum on the ilium, confluent with the supraacetabular crest (when present). Acts as a bone brace to prevent excessive femoral abduction and the origin site for part of the M. iliofemoralis." [PHENOSCAPE] synonym: "acetabular buttress" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200040 name: acrocoracoid process def: "Anatomical process located in the proximal region of the coracoid in avian theropods, that is hook-shaped." [PHENOSCAPE:NI] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004743 ! coracoid bone [Term] id: UBERON:4200041 name: aponeurosis palmaris def: "The palmar aponeurosis is a fibrotendinous complex that functions as the tendinous extension of the palmaris longus, when present, and as a strong stabilizing structure for the palmar skin of the hand. It has five longitudinal slips that project into the base of each digit and a deeper transverse portion that crosses the palm at the proximal end of the metacarpals bones (from Wikipedia)." [PHENOSCAPE] is_a: UBERON:0006614 ! aponeurosis relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002398 ! manus [Term] id: UBERON:4200042 name: brevis shelf def: "Anatomical projection on the ilium, anchoring caudal muscles." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200043 name: brevis fossa def: "Fossa located on the brevis shelf." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:4200042 ! brevis shelf [Term] id: UBERON:4200044 name: articular surface for the calcaneum on the astragalus def: "Contact surface between the calcaneum and the astragalus located on the astragalus." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200045 name: articular surface for the astragalus on the calcaneum def: "Contact surface between the calcaneum and the astragalus located on the calcaneum." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:4200046 name: astragalo-calcaneal canal def: "The astragalo-calcaneal canal forms a foramen between the articulated astragalus and calcaneum when the canal is ossified (Nesbitt, 2011)." [PHENOSCAPE] is_a: UBERON:0004705 ! fenestra relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:4200021 ! astragalus-calcaneum unit [Term] id: UBERON:4200047 name: attachment site def: "Morphological structure denoting the extent of an attachment site for a soft tissue on a skeletal element." [PHENOSCAPE] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004765 ! skeletal element [Term] id: UBERON:4200048 name: bicipital crest def: "Anatomical projection that is an expansion on the proximal region of the humerus." [PHENOSCAPE] comment: Origin of the aponeursis of humeral head of the M. biceps brachii. From Bamuel et al. 1993 synonym: "crista bicipitalis" EXACT [] synonym: "crista tuberculi majoris" EXACT [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200049 name: cartilago sesamoides def: "A sesamoid found in the found in the ligamentum calcanei of a wide variety of frogs. (based on Nussbaum, R. A. 1982." [PHENOSCAPE] is_a: UBERON:0001479 ! sesamoid bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000211 ! ligament [Term] id: UBERON:4200050 name: cotyla def: "A cup shaped articular surface on a bone." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200051 name: cotyloid notch def: "A notch or opening in the ventral part of the acetabular rim." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006802 ! acetabular rim [Term] id: UBERON:4200052 name: crista tibiofibularis def: "Tuberosity on the posterior surface of the lateral femoral condyle." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200053 name: diphycercal tail def: "An internally and externally symmetrical tail (caudal) fin." [PHENOSCAPE] comment: In Dipnoi, may be secondarily acquired from the homocercal condition by loss of the real caudal fin and the gaining of a new one from dorsal and anal elements, e.g. in Gadidae. http://www.briancoad.com/Complete%20Dictionary%20latest%20version.htm synonym: "isocercal tail" EXACT [] is_a: UBERON:4000164 ! caudal fin [Term] id: UBERON:4200054 name: heterocercal tail def: "Type of tail (caudal) fin in which the vertebral column turns upwards into the upper lobe which is longer than the lower. Asymmetrical externally as well as internally." [PHENOSCAPE] comment: Elasmobranchii, Acipenseridae, Polyodontidae and in many larval Teleostomi. May also be used for an asymmetrical caudal fin but with epicercal defining upper lobe longer and hypocercal the lower lobe longer. http://www.briancoad.com/dictionary/DicPics/heterorercal.htm is_a: UBERON:4000164 ! caudal fin relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200055 name: homocercal tail def: "Type of tail fin in which the vertebrae generally turn upward at the hind end of the column, but which is externally symmetrical. The fin rays of the caudal are supported by hypaxial elements." [PHENOSCAPE] comment: Found in most Teleostei. http://www.briancoad.com/dictionary/DicPics/homocercal2.htm is_a: UBERON:4000164 ! caudal fin relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200056 name: hypocercal tail def: "Type of tail fin where the lower lobe is the longer and is supported by the vertebral column. Asymmetrical externally as well as internally." [PHENOSCAPE] comment: found in Pteraspides (fossil). is_a: UBERON:4000164 ! caudal fin relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200060 name: ectepicondylar foramen def: "Formen present on the ectepicondyle of the humerus." [PHENOSCAPE] is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus [Term] id: UBERON:4200061 name: epicercal tail def: "Tail fin in which the the caudal part of the notochord tapers posterodorsally. Based on Pradel et al. 2007." [PHENOSCAPE] comment: Osteostracans are the only jawless vertebrates that share with gnathostomes an epicercal tail. is_a: UBERON:4000164 ! caudal fin relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200062 name: epichordal lepidotrichium def: "Caudal fin lepidotrichium located upon or above the notochord." [PHENOSCAPE] is_a: UBERON:4000174 ! caudal fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200063 name: ectocondylar tubercle def: "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200068 name: prepubic element def: "A small plate of cartilage synchondrotically united with the pubis. Modified from Baez and Harrison 2005." [PHENOSCAPE] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001271 ! pelvic girdle region [Term] id: UBERON:4200069 name: sternal keel def: "The vertical plate of bone or cartilage attached to the median line of the sternum. Modified from Baumel et al. 1993." [PHENOSCAPE] comment: An enlarged ossified keel is found in most, but not all, volant birds. synonym: "carina" EXACT [] synonym: "carina sterni" EXACT [] synonym: "crista sterni" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:4200070 name: median fin spine def: "Fin spine that is part of a median fin." [PHENOSCAPE] is_a: UBERON:4200075 ! fin spine is_a: UBERON:4500008 ! median fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200075 name: fin spine def: "A spine that is part of some fin." [PHENOSCAPE] is_a: UBERON:4000172 ! lepidotrichium relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200076 name: trunk armor pectoral fenestra def: "An opening in the dermal armour of basal gnathostomes that encloses the pectoral fins. (modified from Young 2010)." [PHENOSCAPE] comment: Disjoint from 'pectoral fenestra' of Amphibians (AAO_0000779). synonym: "trunk armour pectoral fenestra" EXACT [] is_a: UBERON:3000755 ! pectoral girdle opening relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200077 name: obsolete posterior iliac process def: "Distinct posterior most of the two 'double heads' of the blade of the ilium." [PHENOSCAPE] is_obsolete: true [Term] id: UBERON:4200078 name: clavicular facet def: "A notch for the articulation of the clavicle on other girdle elements." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] id: UBERON:4200079 name: dorsal iliac process def: "Posteriordorsal process of the ilium." [PHENOSCAPE] comment: It spresences gives the ilium a 'double headed' appearence. is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200080 name: fibular crest def: "A bony projection on the lateral side of the tibia, allowing contact between the later and the fibula." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001446 ! fibula [Term] id: UBERON:4200081 name: hypocleideum def: "Zone of bone organ located on the flat ventral side of the distal region of the furcula, serving as attachment region for pectoral muscles." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007841 ! furcula [Term] id: UBERON:4200083 name: postaxial centrale def: "Centrale in the postaxial region of the mesopodium." [PHENOSCAPE] comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. is_a: UBERON:0012131 ! centrale relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200084 name: preaxial centrale def: "Centrale in the preaxial side of the mesopodium." [PHENOSCAPE] comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. is_a: UBERON:0012131 ! centrale relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200085 name: obsolete glenoid head of scapula def: "The scapula's contribution to the glenoid fossa." [PHENOSCAPE] comment: replaced by 'pars glenoidalis of scapula' is_obsolete: true [Term] id: UBERON:4200086 name: iliac neck def: "A constricted region of the ilium which is dorsal to the acetabulular region. Prior to the expansion of the iliac blade." [PHENOSCAPE] synonym: "neck of ilium" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200087 name: iliac peduncle def: "Bony projection that is part of the dorsal surface of the ischim, where it articulates with the ilium." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:4200088 name: iliac peduncle of the pubis def: "Bony projection that is part of the dorsal surface of the pubis where it meets the ilium." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis [Term] id: UBERON:4200089 name: fibular facet of the calcaneum def: "Articular surface on calcaneum for the fibula." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:4200090 name: fibular facet of the astragalus def: "Articular surface on the astragalus for the fibula." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200091 name: ethomosphenoid region def: "Region consisitng of the ethmoid and sphenoid bones." [PHENOSCAPE] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0001679 ! ethmoid bone [Term] id: UBERON:4200092 name: flexor tubercle of ungual def: "Eminence on the proximo-dorsal surface of the ungual, for attachment of flexor muscles." [PHENOSCAPE] is_a: UBERON:0013703 ! integumentary projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:3010209 ! keratinous claw [Term] id: UBERON:4200093 name: guard scale comment: Need definition is_a: UBERON:0002542 ! scale relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200094 name: inner digits of hand def: "The medial most digit of the manus skeleton." [PHENOSCAPE] comment: In most taxa this is digits II-IV, but this varies based on the number of digits and thier identity in the taxa examined. is_a: UBERON:0005451 ! segment of manus relationship: part_of UBERON:0012140 ! digitopodium region [Term] id: UBERON:4200095 name: infraspinous process def: "Process on infraspinous (region below the spine) of scapula." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:4200096 name: intercondylar fossa def: "The deep fossa between the femoral condyles in which the cruciate ligaments are attached. From Medilexicon.com." [PHENOSCAPE] synonym: "femoral groove" EXACT [] synonym: "femoral sulcus" EXACT [] synonym: "femoropatellar groove" EXACT [] synonym: "patellar groove" EXACT [] synonym: "patellar sulcus" EXACT [] synonym: "patellar surface of femur" EXACT [] synonym: "patellofemoral groove" EXACT [] synonym: "trochlea of femur" EXACT [] synonym: "trochlear groove of femur" EXACT [] synonym: "trochlear sulcus of femur" EXACT [] synonym: "trochlear surface of femur" EXACT [] is_a: UBERON:0004704 ! bone fossa is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004406 ! distal epiphysis of femur [Term] id: UBERON:4200097 name: intermediate spine def: "Spine ventrally located on the body and not part of the pectoral, pelvic or anal fins." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200098 name: ischial foot def: "Expansion of the distal region of the ischium." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:4200099 name: lateral extrascapular def: "The most lateral of the paired series of extrascapular bones and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur." [PHENOSCAPE] is_a: UBERON:2000663 ! extrascapula relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200100 name: latissimus dorsi process def: "A bony process on the dorsal side of the proximal region of the humerus which corresponds to the insertion site of the Latissimus dorsi muscle." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200101 name: m.scapulotriceps def: "Muscle that represents one branch of the larger triceps brachii, origination site near the glenoid fossa on the scapula." [PHENOSCAPE] is_a: UBERON:0003662 ! forelimb muscle relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200102 name: median dorsal plate def: "Dermal armour plate that is situated behind the head and constitute the dorsal most portion of the dermal shoulder girdle. Modified from Brazeau 2009, Young 2010." [PHENOSCAPE] comment: Present in some basal gnathostomes. is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4200103 name: median extrascapular def: "The medial of the the paired series of extrascapular bones which carries the extrascapular or supratemporal canal." [PHENOSCAPE] is_a: UBERON:2000663 ! extrascapula relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200104 name: metacarpal extensor pit def: "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002374 ! metacarpal bone [Term] id: UBERON:4200105 name: nerve foramen def: "Opening and/or passageway for nerve(s) in bone." [PHENOSCAPE] is_a: UBERON:0004111 ! anatomical conduit relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200106 name: muscle scar def: "A distinct region on a skeletal element that demarcates the attachment area of a muscle or tendon. Often associated with rugosity or tubercles." [PHENOSCAPE] comment: While this term is applicable to both vertebrates and invertebrates, the qualities used to demarcate muscle attachment areas between the two groups may not be identical. synonym: "muscle insertion site" BROAD [] is_a: UBERON:4200047 ! attachment site relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200107 name: obturator process of ischium def: "Process located on the ventral shaft of the ischium that denotes the attachment site of the pubio-ischio-femoralis externus." [PHENOSCAPE] comment: In birds the pubio-ischio-femoralis externus is sometimes called the M.oburatorius lateralis and medialis. is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:4200108 name: outer digit of hand def: "The flanking digit of the manus." [PHENOSCAPE] comment: In most taxa this is digits I and V, but this varies based on the number of digits in the manus is_a: UBERON:0005451 ! segment of manus relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0012140 ! digitopodium region [Term] id: UBERON:4200109 name: outer digits of pes def: "The flanking digit of the pes." [PHENOSCAPE] comment: In most taxa this is digits I and V, but this varies based on the number of digits in the pes. is_a: UBERON:0005445 ! segment of pes relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0012140 ! digitopodium region [Term] id: UBERON:4200110 name: prepectoral spine def: "Spine located anterior to the pectoral fin." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200111 name: prepelvic fin spine def: "Spine located anterior to the pelvic fin and posterior to the pectoral fin." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200112 name: prepectoral space def: "A triangular, anteroventrally facing area developed between the preaxial margin of the humerus and the proximal limb of the ventral humeral ridge. Based on Callier et al. 2009 ." [PHENOSCAPE] is_a: UBERON:0005055 ! zone of long bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200113 name: predorsal scute is_a: UBERON:2002294 ! fish scute relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200114 name: prepubic process def: "Elongate process forming the anteriormost part of the pubis." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis [Term] id: UBERON:4200115 name: presupracleithrum def: "An skeletal element of the upper pectoral girdle overlapped by the opercular and posttemporal bones." [PHENOSCAPE] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200116 name: pteroid def: "Slender bone connected to the carpus in pterosaurs. The bone, which may have pointed forward, supports the propatagium, a membrane located between the carpus and pectoral region." [PHENOSCAPE] comment: This structure is unique to pterosaurs. There is debate wherther this structure is derived from metacarpal I, the carpal bones or is a a novel bone. See Unwin et al. 1996 is_a: UBERON:0008962 ! forelimb bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200117 name: pubic boot def: "Anteroposterior expansion of the distal region of the pubis." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis [Term] id: UBERON:4200118 name: pubic peduncle def: "Bony projection on the anterior portion of the ilium, anterior to the acetabulum that articulates with the pubis." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200119 name: pubis-ischium contact def: "Contact zone between the pubis and the ischium." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone [Term] id: UBERON:4200120 name: puboischiadic plate def: "A broad expnase of bone incorperating both the pubis and the ischium. Origin site for ventral limb muscle including the pubioishciofemoralis externus. Modified from Romer 1956 ." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone [Term] id: UBERON:4200121 name: puboischiotibialis muscle alt_id: UBERON:0011914 def: "A muscle that originates from the puboischaidic plate and inserts on the tibia. Acts to adduct the hindlimb. Is anterior to cloacal gland in males. Modified from De luliis and Pulera." [http://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ad] synonym: "M. puboischiotibialis" EXACT [] synonym: "puboischiotibialis" EXACT [PHENOSCAPE:ad] is_a: UBERON:0014794 ! pectoral appendage muscle property_value: taxon_notes "Homologous to mammalian gracilis [ISBN:0073040584]" xsd:string [Term] id: UBERON:4200122 name: pubotibialis def: "Originates in on the pubic cartillage and inserts on the tibia, acts to adduct the hindlimb. Modified from De luliis and Pulera." [PHENOSCAPE] is_a: UBERON:0001325 ! muscle of pelvis relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200123 name: scapular process def: "The dorsal extension of the scapulocoracoid above the level of the glenoid region in basal gnathostomes. Modified from Brazeau 2009." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:4200124 name: sternal trabecula def: "Anatomical projections that are elongate processes in the mid and posterior regions of the sternum." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:4200125 name: supraacetabular crest def: "Anatomical projection (crest) located dorsaly to the acetabulum." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200126 name: supraacetabular rim def: "Bony rim that is part of the supraacetabular region." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200127 name: suprascapula foramen def: "The route through which structures pass between the base of the neck and the posterior scapular region. It is formed by the suprascapular notch of the scapula and the superior transverse scapular ligament. From http://medical-dictionary.thefreedictionary.com/suprascapular+foramen." [PHENOSCAPE] is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:4200128 name: synarcual region of vertebral column def: "Series of fused cervical vertebrae or vertebral elements. Based on Jeffrey C. Carrier. Biology of Sharks and Their Relatives, 2012. CRC Press." [PHENOSCAPE] comment: 'The synarcual is a structure incorporating the anterior vertebrae of the axial skeleton and occurs in vertebrate taxa such as the fossil group Placodermi and the Chondrichthyes (Holocephali, Batoidea)' DOI:10.1007/s00435-012-0169-9 synonym: "synarcuum" EXACT [] is_a: UBERON:0006077 ! subdivision of vertebral column relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:4200129 ! synarcual region [Term] id: UBERON:4200129 name: synarcual region def: "Axial subdivision that includes a series of fused cervical vertebrae or vertebral elements. Based on Jeffrey C. Carrier. Biology of Sharks and Their Relatives, 2012. CRC Press." [PHENOSCAPE] is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:4200130 name: tibial facet of astragalus def: "Facet for the articulation of the tibia on the astragalus (talus)." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200131 name: trochanteric shelf def: "Anatomical projection on the anterolateral region of the proximal end of the femur." [PHENOSCAPE] comment: In Archosaurs was originally a possible insertion site for the m. iliofemoralis externus (Hutchinson 2001). In more derived dinosaurs this becomes a distinct process possibly providing the attachment surface for mm. iliotrochanteri in addition to m. iliofemoralis externus (Carrano and Hutchinson 2002) is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200132 name: obsolete tuber def: "OBSOLETE Eminence or swelling on anatomical surface." [PHENOSCAPE] comment: Term is redundant with "tubercle" (UBERON:0005813). is_obsolete: true replaced_by: UBERON:0005813 [Term] id: UBERON:4200133 name: crest def: "A ridge or similar projection rising above the surface of an anatomical structure." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200134 name: antimere def: "A part in the body of an organism that corresponds to an opposite symmetrical part." [PHENOSCAPE] is_a: UBERON:0000475 ! organism subdivision relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200135 name: puboischiadic bar def: "A transverse flattened or cylindrical plate in the posterior body wall opposite the anterior ends of the pelvic fins, in front of the vent and at the posterior end of the body cavity, that supports a few anterior pelvic radials and a basal cartilage, the basipterygium. from Leonard J. V. Compagno. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2." [PHENOSCAPE] comment: Potentially homologous to the pelvic girdle. is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:4200136 name: triphycercal tail def: "A caudal fin with three lobes." [PHENOSCAPE] comment: Found in coelacanths is_a: UBERON:4000164 ! caudal fin relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200139 name: palatoquadrate element def: "Endochondral element that is part of the suspensorium sometimes ossifying distally as the quadrate bone and linking the basal section of the braincase to the lower jaw." [PHENOSCAPE] comment: The palatoquadrate cartilage is the primary element of the suspensorium in larval amphibians and can ossify distally in some taxa, becoming the quadrate bone. In mammals the quadrate bone becomes the incus. is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0002-1810-9886 relationship: part_of UBERON:0003108 ! suspensorium [Term] id: UBERON:4200140 name: prepollical element def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [PHENOSCAPE] is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0012135 ! prepollex skeleton [Term] id: UBERON:4200141 name: prehallical element def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [PHENOSCAPE] is_a: UBERON:0015050 ! tarsus endochondral element relationship: dc-contributor https://orcid.org/0000-0002-1810-9886 relationship: part_of UBERON:3000922 ! prehallux skeleton [Term] id: UBERON:4200150 name: accessory foramen def: "Foramen found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen 'c' and 'd' after Jarvik 1996." [PHENOSCAPE] is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200151 name: toe disc is_a: UBERON:3000981 ! limb external integument structure relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:4200152 name: intertarsale sesamoid def: "Sesamoid bone in the tarsal region." [PHENOSCAPE] synonym: "os sesamoides tarsale" BROAD [] is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0008000 ! sesamoid bone of pes is_a: UBERON:0017261 ! intertarsal sesamoid relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200153 name: metatarsal bone of digit 6 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:4200154 ! metapodium bone 6 [Term] id: UBERON:4200154 name: metapodium bone 6 is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:0016866 ! digit 6 plus metapodial segment [Term] id: UBERON:4200155 name: metapodium bone 7 is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:0016867 ! digit 7 plus metapodial segment [Term] id: UBERON:4200156 name: metapodium bone 8 is_a: UBERON:0003821 ! metapodium bone relationship: part_of UBERON:0016868 ! digit 8 plus metapodial segment [Term] id: UBERON:4200157 name: metatarsal bone of digit 7 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:4200155 ! metapodium bone 7 [Term] id: UBERON:4200158 name: metatarsal bone of digit 8 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:4200156 ! metapodium bone 8 [Term] id: UBERON:4200159 name: ventral ridge system def: "A collection of attached ridges on the ventrl surface of the femur consisting of the internal and fourth trochanters plus the adductor blade and crest. Most notible in early amniotes (based on Romer 1956)." [PHENOSCAPE] is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200160 name: mesomere (fin) def: "The median series of bones supporting the pectoral fin of sarcopterygian fish. See Dipnomorpha. In the pectoral fin, the first mesomere is the humerus, the second the ulna, and the third probably the intermedium. The radius is the first preaxial radial. All other homologies are suspect. from http://palaeos.com/vertebrates/glossary." [PHENOSCAPE] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0012353 ! fin skeleton [Term] id: UBERON:4200161 name: mesomere 5 is_a: UBERON:4200160 ! mesomere (fin) [Term] id: UBERON:4200162 name: mesomere 4 is_a: UBERON:4200160 ! mesomere (fin) [Term] id: UBERON:4200165 name: basal scute def: "A scute parte of the basal surface of the fin in Sarcopterygian fish." [PHENOSCAPE] is_a: UBERON:0008201 ! scute relationship: part_of UBERON:0002534 ! paired fin [Term] id: UBERON:4200166 name: hindlimb interepipodial space def: "The space between the bones of the tibia and the fibula." [PHENOSCAPE] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:4200167 name: mesial pelvic ridge is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:4200168 name: obsolete neck of ilium is_obsolete: true [Term] id: UBERON:4200169 name: process 2 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and associated with subscapularis muscle (based on Coates 1996)." [PHENOSCAPE] synonym: "process 2" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1819" xsd:string [Term] id: UBERON:4200170 name: process 3 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 4 of entepicondyle (see Coates 1996)." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200171 name: process 4 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 3 of entepicondyle (see Coates 1996)." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200172 name: neck of humerus synonym: "anatomic neck of humerus" RELATED [FMA:23356] synonym: "collum anatomicum (Humerus)" EXACT [FMA:23356] synonym: "collum anatomicum humeri" EXACT OMO:0003011 [FMA:23356, FMA:TA] synonym: "humeral neck" EXACT [] xref: FMA:23356 xref: NCIT:C33164 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus [Term] id: UBERON:4200173 name: dorsal ridge is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200174 name: distal condyle of humerus def: "The area encompassing the radial and ulnar condyles of the humerus." [PHENOSCAPE] is_a: UBERON:0009988 ! condyle of humerus [Term] id: UBERON:4200175 name: supraglenoid region is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:4200176 name: ascending process of clavicle def: "A bony dorsal extension of the clavicle." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200177 name: supracondyle tubercle is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200178 name: proximal mesomere is_a: UBERON:4200160 ! mesomere (fin) [Term] id: UBERON:4200179 name: obsolete manual claw comment: Term is redundant with 'nail of manual digit' (UBERON:0009565). property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1699" xsd:string is_obsolete: true replaced_by: UBERON:0009565 [Term] id: UBERON:4200180 name: semilunate carpal def: "The moon shaped fusion of distal carpals 1 and 2 found in some theropod dinosaurs, permitting greater wrist mobility." [PHENOSCAPE] is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:4200181 name: astragalus head def: "The region of the astragalus/ talus that carries the articular surface for the navicular or central metatarsal." [PHENOSCAPE] synonym: "talus head" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200182 name: lateral tubercle of astragalus is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200183 name: bicipital tuberosity def: "The rough eminence which is on the anterior inner aspect of the neck of the radius and into which the tendon of the biceps is inserted. From http://www.merriam-webster.com/medical." [PHENOSCAPE] is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001423 ! radius bone [Term] id: UBERON:4200184 name: ulnar tuberosity def: "His roughened area of bone sits distomedially at the base of the coronoid process. It is the attachment site for the brachialis muscle. From http://www.anatomyexpert.com/." [PHENOSCAPE] is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001424 ! ulna [Term] id: UBERON:4200185 name: entepicondyle fossa def: "A fossa on the distal humerus proximal to the entepicondyle." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200186 name: distal keel of metacarpal III is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 [Term] id: UBERON:4200187 name: obsolete hyperphalangy of manus def: "Increase the number of phalanges per digit beyond their ancestral digital\nformulas. Modified from Cooper and Dawson 2009." [PHENOSCAPE] comment: This class was obsoleted as it did not represent an anatomical structure property_value: seeAlso "https://github.com/obophenotype/uberon/issues/442" xsd:anyURI is_obsolete: true [Term] id: UBERON:4200188 name: manual toe disc is_a: UBERON:4200151 ! toe disc relationship: part_of UBERON:0002389 ! manual digit [Term] id: UBERON:4200189 name: pedal toe disc is_a: UBERON:4200151 ! toe disc relationship: part_of UBERON:0001466 ! pedal digit [Term] id: UBERON:4200190 name: zygosphene def: "An articular process on anterior surface of neural arch of vertebrae which fits into zygantrum. Modified from Henderson's dictionary of Biological terms 12th Edition." [PHENOSCAPE] comment: Found in snakes and some lizards. is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0003861 ! neural arch [Term] id: UBERON:4200191 name: obsolete humeral facet of the ulna is_obsolete: true [Term] id: UBERON:4200192 name: ulnar facet of the humerus synonym: "ulnar facet" BROAD [] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200193 name: posterodorsal process of ilium def: "Anatomical project part of the blade of the ilium that projects posteriorly." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4200194 name: intercentrum def: "The anteriormost of the two possible elements found in the tetrapod centrum (when the centrum is not a single element)." [PHENOSCAPE] comment: If there is only one element that makes part of the centrum it can be either the intercentrum (some amphibians) or the pleurocentrum (amniotes) (see Hildebrand and Goslow 's Analysis of Vertebrate structure) is_a: UBERON:0001075 ! bony vertebral centrum [Term] id: UBERON:4200195 name: pleurocentrum def: "The posteriormost of the two possible elements found in the tetrapod centrum (when the centrum is not a single element)." [PHENOSCAPE] comment: If there is only one element that makes part of the centrum it can be either the intercentrum (some amphibians) or the pleurocentrum (amniotes) (see Hildebrand and Goslow 's Analysis of Vertebrate structure) is_a: UBERON:0001075 ! bony vertebral centrum [Term] id: UBERON:4200196 name: atlas intercentrum def: "The intercentrum unit of the atlas vertebra." [PHENOSCAPE] is_a: UBERON:4200194 ! intercentrum relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 [Term] id: UBERON:4200197 name: anterior humeral ridge def: "Ridge or keel at the proximal end of the humerus. (see Laurin 1998)." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200198 name: incisor process def: "Process that is part of the mandible that is in close proximity to the incisor teeth." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:4200199 name: sallet sensory system def: "Ciliary restraint system in the inner ear that uses sallets instead of the tectorial membrane." [PHENOSCAPE] synonym: "sallet restraint system" EXACT [] is_a: UBERON:0011216 ! organ system subdivision relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002105 ! vestibulo-auditory system [Term] id: UBERON:4200203 name: humeral facet on the ulna def: "Facet on the ulna for articulation with the ulnar condyle of the humerus." [PHENOSCAPE] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001424 ! ulna [Term] id: UBERON:4200204 name: humeral facet on radius def: "Facet on the radius for articulation with the radial condyle of the humerus." [PHENOSCAPE] synonym: "proximal articular surface of radius" EXACT [] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001423 ! radius bone [Term] id: UBERON:4200205 name: obsolete glenoid facet is_obsolete: true [Term] id: UBERON:4200206 name: internal rim of coracoid foramen def: "The internal part of the rim denoting the coracoid foramen." [PHENOSCAPE] is_a: UBERON:2001737 ! coracoid foramen [Term] id: UBERON:4200207 name: external rim of the coracoid foramen def: "The external wall of the rim denoting the coracoid foramen." [PHENOSCAPE] is_a: UBERON:2001737 ! coracoid foramen [Term] id: UBERON:4200208 name: pectoral fin intermediate radial bone def: "Radial bone found in between the proximal and distal radial bones." [PHENOSCAPE] is_a: UBERON:2101586 ! pectoral fin radial element [Term] id: UBERON:4200209 name: postaxial process of the ulnare def: "A projection on the postaxial region of the ulnare." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002445 ! ulnare [Term] id: UBERON:4200210 name: postaxial process of the femur def: "A projection on the postaxial region of the femur." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200211 name: postaxial process of the fibula def: "A projection on the postaxial region of the fibula." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001446 ! fibula [Term] id: UBERON:4200212 name: pectoral process of humerus synonym: "pectoral process" RELATED [] is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200213 name: deltoid process is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200214 name: epipodial facet def: "Facets for the articulation of the epipodial (zeugopodial) elements." [PHENOSCAPE] is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0011583 ! stylopodial skeleton [Term] id: UBERON:4200215 name: suture def: "Line of junction between two parts immovably connected. Modified from Henderson's Dictionary of Biological Terms." [PHENOSCAPE] xref: MESH:D013537 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002209 ! fibrous joint [Term] id: UBERON:4200216 name: fibula facet of femur def: "Facet on the femur for the fibula." [PHENOSCAPE] synonym: "fibular fossa" BROAD [] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200217 name: tibial facet of femur def: "Facet on the femur for the tibia." [PHENOSCAPE] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:4200218 name: musculotendinous bundle def: "A collection of muscle and tendinous tissue." [PHENOSCAPE] is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:4200219 name: middle phalanx of manual digit 1 is_a: UBERON:0003620 ! manual digit 1 phalanx is_a: UBERON:0003864 ! middle phalanx of manus [Term] id: UBERON:4200220 name: iliac ramus is_a: UBERON:0001273 ! ilium [Term] id: UBERON:4200221 name: growth line def: "Distinct layer that indicate the growth of an organism." [PHENOSCAPE] is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:4200222 name: distal groove of humerus def: "Groove along the distal margin of the humerus, ventral to the radial and ulnar condyle." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200223 name: foramen C def: "Foramen located on the scapulocoracoid, located just behind the cleithral anteroventral process(the articulation with the cleithrum). Modified from Coates 1996." [PHENOSCAPE] is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] id: UBERON:4200224 name: columnar area def: "Modified from Garvey et al. 2005. ' Between the dorsal ridge and the caput humeri is a futher recessed area......that clearly separates the two structures and is slightly separted from the dorsal surface of the entepicondyle, and more specifically from the unfinished bone of the entepicondyle, by a narrow ridge.'." [PHENOSCAPE] is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200225 name: scapulohumeralis muscle def: "Muscle found primarily in basal sarcopterygians that runs between teh scapulocoracoid and the humerus. Its exact homologies with more derived shoulder muscles in Tetrapoda is unclear." [PHENOSCAPE] is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:4200226 name: anteroventral process of cleithrum def: "A ramus of the celithrum that descend along the girdle. Its rounded outer surface forms the articulation surface for the clavicle while its anterior surface overlaps with the anterior process of the scapulocoracoid." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:4200227 name: obsolete entepicondyle canal is_obsolete: true [Term] id: UBERON:4200228 name: excurrent foramen of ectepicondylar foramen is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen [Term] id: UBERON:4200229 name: incurrent foramen of ectepicondylar foramen is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen [Term] id: UBERON:4200230 name: surface of bone def: "An anatomical surface that is part of a bone." [PHENOSCAPE] synonym: "bone surface" EXACT [] is_a: UBERON:0006984 ! anatomical surface relationship: part_of UBERON:0001474 ! bone element [Term] id: UBERON:4200231 name: unfinished bone surface def: "A bone surface that is not smooth and periosteal. The usual implication is that the bone was still growing, was covered in cartilage, or both. From Paleos.com." [PHENOSCAPE] is_a: UBERON:4200230 ! surface of bone [Term] id: UBERON:4200232 name: finished bone surface def: "A smooth periosteal bone surface." [PHENOSCAPE] is_a: UBERON:4200230 ! surface of bone [Term] id: UBERON:4200233 name: dorsal clavicular process def: "A process, extending dorsally from the clavicular plate, that attaches to the cleithrum. Modified from Clack 2012 and Coates 1996." [PHENOSCAPE] synonym: "ascending dorsal clavicular process" EXACT [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200234 name: precoronoid bone is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200235 name: postcoronoid bone is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200236 name: anterior coronoid bone is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200237 name: posterior coronoid bone is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200238 name: coronoid fang is_a: UBERON:0011603 ! coronoid tooth [Term] id: UBERON:4200239 name: shagreen tooth field is_a: UBERON:0009678 ! tooth row [Term] id: UBERON:4200240 name: fronto-ethmoidal shield is_a: UBERON:0003113 ! dermatocranium [Term] id: UBERON:4200241 name: postrostral bone is_a: UBERON:4200240 ! fronto-ethmoidal shield [Term] id: UBERON:4200242 name: median postrostral bone is_a: UBERON:4200241 ! postrostral bone [Term] id: UBERON:4200243 name: surangular pit line def: "...a v-shaped pair of ridges, each carrying three or four smallpores Modified from Ahlberg et al. 2005." [PHENOSCAPE] is_a: UBERON:0011636 ! surangular bone [Term] id: UBERON:4200244 name: anterior supraorbital bone is_a: UBERON:2000691 ! supraorbital bone [Term] id: UBERON:4200245 name: parasymphysial plate def: "Bone, often with tooth attachments, on the lingual side of the anterior of the lower jaw." [PHENOSCAPE] is_a: UBERON:0004768 ! bone of lower jaw [Term] id: UBERON:4200246 name: mesial parasymphysial foramen is_a: UBERON:4200245 ! parasymphysial plate [Term] id: UBERON:4200247 name: lateral parasymphysial foramen is_a: UBERON:4200245 ! parasymphysial plate [Term] id: UBERON:4200248 name: hypophysial region comment: Region of the endocranium that encompasses the connection between the hypothalamus and the anterior pituitary. synonym: "hypophyseal region" EXACT [] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:4200250 name: meckelian bone def: "The ossification of the Meckel's cartilage." [PHENOSCAPE] is_a: UBERON:0001708 ! jaw skeleton is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0003107 ! Meckel's cartilage [Term] id: UBERON:4200251 name: meckelian foramen is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:4200250 ! meckelian bone [Term] id: UBERON:4300001 name: obsolete maxillary saddle def: "A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] is_obsolete: true replaced_by: UBERON:3000652 [Term] id: UBERON:4300002 name: palatine prong def: "A process on the palatine that projects outward and upward and articulates with a depression (maxillary saddle) in the proximal end of the maxilla [Gosline WA et al, 1966; Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001682 ! palatine bone [Term] id: UBERON:4300003 name: urodermal bone def: "Paired, thin dermal bones at the rear of the caudal fin skeleton, derived from scales." [PHENOSCAPE] xref: http://www.briancoad.com/Dictionary/R-Z\,%20Abbreviations\,%20Symbols%20and%20References.htm is_a: UBERON:0004376 ! fin bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000167 ! caudal fin skeleton [Term] id: UBERON:4300004 name: scale pocket def: "A continuous flap of skin with scales implanted in pockets or invaginations [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] is_a: UBERON:2001951 ! skin flap relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300005 name: aphakic space def: "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision." [PHENOSCAPE] xref: http://www.briancoad.com/Dictionary/Introduction%20and%20A-F.htm is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:4300006 name: scale row def: "A series of scales in alignment with each other along some axis of the body." [PHENOSCAPE:BF] is_a: UBERON:0000477 ! anatomical cluster relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300007 name: medial pelvic process def: "Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf]." [http://hdl.handle.net/10088/11710] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2000623 ! basipterygium bone [Term] id: UBERON:4300008 name: epipleural series def: "Anatomical cluster that consists of the epipleurals." [PHENOSCAPE:bf] is_a: UBERON:0000477 ! anatomical cluster relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300012 name: clavus def: "A rudder-like lobe formed from extensions of dorsal and anal fin rays." [PHENOSCAPE] comment: Found in ocean sunfishes (Molidae) which lack a caudal fin. TODO: consider relationship to fin. synonym: "pseudo-caudal fin" EXACT [] synonym: "pseudocaudal fin" EXACT [] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:4300013 name: paired fin radial skeleton synonym: "paired fin radial series" EXACT [] is_a: UBERON:4440008 ! fin radial skeleton relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0010713 ! paired fin skeleton [Term] id: UBERON:4300014 name: dorsal cleithrum comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300015 name: ventral cleithrum comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300016 name: pelvic cartilage def: "Cartilage element associated with the pelvic fin in aulopiform fishes." [PHENOSCAPE] comment: Paralepidids (except Anotopterus), Alepisaurus, and evermannellids have a well-developed cartilage that extends dorsally into the body musculature from the region where the lateral pelvic-fin rays articulate with the girdle. In some young specimens, this cartilage is attached by a small rod of cartilage to the cartilage capping the central process, suggesting that it originates as part of the lateral cartilage. A similar cartilage is present in myctophids (Fig. 4A) but lacking in other aulopiforms and outgroups. [From Baldwin CC & Johnson GD (1996) Interrelationships of Aulopiformes. Interrelationships of Fishes, eds Stiassny MLJ, Parenti LR, & Johnson GD (Academic Press, San Diego, CA), pp 355-404.] is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000152 ! pelvic fin [Term] id: UBERON:4300017 name: rostrodermethmoid def: "Dermal bone formed by the fusion of dermethmoids and rostral bones [Fink, W L Weitzman, S H. 1982. Relationships of the stomiiform fishes (Teleostei), with a description of Diplophos Bulletin of The Museum of Comparative Zoology 150:31-93. http://www.biodiversitylibrary.org/part/28697]." [PHENOSCAPE] is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0011597 ! bone of upper jaw relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003112 ! olfactory region [Term] id: UBERON:4300018 name: ventral marginal cartilage def: "In the clasper skeleton, a flat semicylindrical cartilage that is partially fused to the lateral edge of the axial cartilage, and forms the lateral wall of the clasper groove [Compagno, L. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]." [PHENOSCAPE] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0010518 ! pelvic fin clasper [Term] id: UBERON:4300019 name: dorsal fin basal cartilage (elasmobranchs) def: "The large cartilage of the dorsal fin, on which the radials articulate distally [Compagno 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]." [PHENOSCAPE] synonym: "basal plate" BROAD [] synonym: "dorsal fin basal plate" EXACT [] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000168 ! dorsal fin skeleton [Term] id: UBERON:4300020 name: anal fin basal cartilage def: "The large cartilage of the anal fin, on which the radials articulate distally [Compagno 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]." [PHENOSCAPE] synonym: "anal fin basal plate" EXACT [] synonym: "anal fin base plate" BROAD [] synonym: "basal plate" BROAD [] is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000166 ! anal fin skeleton [Term] id: UBERON:4300021 name: anterolateral plate def: "Dermal bone that is part of the scapular complex in placoderm fishes." [ISBN:3-89937-052-X] synonym: "AL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4300022 name: anteroventral plate def: "Dermal bone that is part of the scapular complex in placoderms, located in the ventral armour adjacent to the interolateral (IL) and anterior ventrolateral (AVL) plates." [PHENOSCAPE] synonym: "anterior ventral plate" EXACT [] synonym: "AV" EXACT [] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4300023 name: interolateral plate def: "Dermal bone that is part of the scapular complex in placoderms, and located anterior to the anterior ventrolateral (AVL) plate." [ISBN:3-89937-052-X] synonym: "IL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4300024 name: spinal plate def: "Dermal bone that is part of the scapular complex in placoderms, and located lateral to the anterior ventrolateral (AVL) plate." [ISBN:3-89937-052-X] synonym: "Sp" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4300025 name: posterior dorsolateral plate def: "Dermal bone that is part of the scapular complex in placoderms, located posterior to the main components of the complex." [ISBN:3-89937-052-X] synonym: "PDL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4300026 name: anterior ventrolateral plate def: "Dermal bone that is part of the ventral region of scapular complex in placoderms (see also posterior ventrolateral plate). In most placoderms with a long ventral armour, the ventral wall is typically composed of two large paired lateral plates (anterior and posterior ventrolaterals)." [ISBN:3-89937-052-X] synonym: "AVL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4300028 name: posterior ventrolateral plate def: "Dermal bone that is part of the ventral region of scapular complex in placoderms (see also anterior ventrolateral plate). In most placoderms with a long ventral armour, the ventral wall is typically composed of two large paired lateral plates (anterior and posterior ventrolaterals)." [ISBN:3-89937-052-X] synonym: "PVL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000171 ! scapular complex [Term] id: UBERON:4300029 name: dermal neck joint def: "Dermal articulation between skull and shoulder girdle localized to paired dermal neck-joint between anterior dorsolateral plate (ADL) and paranuchal (PNu) plates in placoderms." [DOI:10.1146/annurev-earth-040809-152507] comment: TODO: add ADL and PNu classes and relationships synonym: "cervical neck joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300030 name: flexor caudalis muscle comment: TODO: needs definition. is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300031 name: fin web def: "Membrane that connects the lepidotrichia or ceratotrichia of a fin." [PHENOSCAPE] synonym: "fin membrane" EXACT [] is_a: UBERON:0000014 ! zone of skin relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0008897 ! fin [Term] id: UBERON:4300032 name: posterior dorsal fin basal cartilage (elasmobranchs) def: "The large cartilage of the posterior dorsal fin, on which the radials articulate distally." [PHENOSCAPE] synonym: "posterior dorsal fin base plate" EXACT [] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4100014 ! posterior dorsal fin [Term] id: UBERON:4300033 name: anterior dorsal fin basal cartilage (elasmobranchs) def: "The large cartilage of the anterior dorsal fin, on which the radials articulate distally." [PHENOSCAPE] synonym: "anterior dorsal fin base plate" EXACT [] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4200023 ! anterior dorsal fin [Term] id: UBERON:4300034 name: antorbital cartilage def: "Cartilage element on the neurocranium of sawsharks and batoids, separate cartilages attached to the sides of the nasal capsules that support the sides or front of the head. [Compagno, L.J.V. Sharks of the world. An annotated and illustrated catalogue of shark species known to date. Volume 2. Bullhead, mackerel and carpet sharks (Heterodontiformes, Lamniformes and Orectolobiformes). FAO Species Catalogue for Fishery Purposes. No. 1, Vol. 2. Rome, FAO. 2001. 269p. ISBN 92-5-104543-7]." [ISBN:92-5-104543-7] is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:4300035 name: supraneural element def: "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [PHENOSCAPE] is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:4300036 name: supraneural cartilage is_a: UBERON:2001457 ! postcranial axial cartilage is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300037 name: bony fin ray def: "Fin ray that is composed of bone tissue." [PHENOSCAPE] is_a: UBERON:0004376 ! fin bone is_a: UBERON:4400005 ! fin ray relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300038 name: facet def: "A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding." [http://medical-dictionary.thefreedictionary.com/facet] is_a: UBERON:0006984 ! anatomical surface relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004765 ! skeletal element [Term] id: UBERON:4300081 name: mesopterygium element is_a: UBERON:2101587 ! pectoral fin proximal radial element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300082 name: metapterygium element is_a: UBERON:2101587 ! pectoral fin proximal radial element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300083 name: propterygium element is_a: UBERON:2101587 ! pectoral fin proximal radial element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300087 name: mesopterygium bone is_a: UBERON:2001587 ! pectoral fin proximal radial bone is_a: UBERON:4300081 ! mesopterygium element relationship: develops_from UBERON:1500007 ! mesopterygium cartilage [Term] id: UBERON:4300088 name: metapterygium bone is_a: UBERON:2001587 ! pectoral fin proximal radial bone is_a: UBERON:4300082 ! metapterygium element relationship: develops_from UBERON:4400000 ! metapterygium cartilage [Term] id: UBERON:4300089 name: propterygium bone is_a: UBERON:2001587 ! pectoral fin proximal radial bone is_a: UBERON:4300083 ! propterygium element relationship: develops_from UBERON:2001589 ! propterygium cartilage [Term] id: UBERON:4300090 name: X bone def: "The x bone is a detached neural spine anterior to the neural spine of preural centrum 2." [PHENOSCAPE] comment: In fishes, accessory bones (e.g., X bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300091 name: Y bone def: "The y bone is a detached neural spine anterior to the haemal spines of preural centrum 2." [PHENOSCAPE] comment: Comment: In fishes, accessory bones (e.g., Y bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300092 name: mesocoracoid element is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] id: UBERON:4300096 name: anal fin pterygiophore 1 def: "Anal fin pterygiophore that is the anteriormost of the series." [PHENOSCAPE] is_a: UBERON:2001420 ! anal fin pterygiophore relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300097 name: anal fin spine 1 def: "Anal fin spine that is the anteriormost element of the series." [PHENOSCAPE] is_a: UBERON:2002262 ! anal fin spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300098 name: anal fin spine 2 def: "Anal fin spine that is located posteriorly adjacent to the first anal fin spine." [PHENOSCAPE] is_a: UBERON:2002262 ! anal fin spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300101 name: dorsal fin ceratotrichial spine (elasmobranchs) def: "A small to large enameloid-covered, dentine-cored spine located on the anterior margins of one or both of the dorsal fins, found on bullhead sharks (Heterodontiformes), many dogfish sharks, fossil (but not living) batoids, chimaeroids, but lost entirely or buried in the fin bases of other shark-like fishes [Compagno, Sharks of the World]." [PHENOSCAPE] is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:4400001 ! ceratotrichium relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000168 ! dorsal fin skeleton [Term] id: UBERON:4300102 name: postcleithral scale def: "Scale that is posteriorly adjacent to the pectoral girdle [Cloutier and Arratia 2004, character 183]." [PHENOSCAPE] is_a: UBERON:0007380 ! dermal scale relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300103 name: rudimentary pectoral fin ray def: "Pectoral fin lepidtrichium that is small, unbranched and unsegmented." [PHENOSCAPE] is_a: UBERON:4500007 ! pectoral fin ray relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300104 name: ectocoracoid bone def: "A paired dermal bone in Gasterosteiformes connected with the coracoid and extending posteriorly. Has also been applied to the element below the scapula and applied to the coracoid in Dipnoi. Dictionary of Ichthyology." [PHENOSCAPE] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300105 name: caudal vertebra 1 def: "Caudal vertebra that is the anteriormost element of the series." [PHENOSCAPE] is_a: UBERON:0001095 ! caudal vertebra relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300106 name: ventral limb of posttemporal def: "Zone of bone organ that is the ventral extension of the posttemporal." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2000549 ! posttemporal [Term] id: UBERON:4300108 name: lepidotrichial segment def: "Zone of bone organ that is part of a lepidotrich and connected to other segments by collagen fibers. These segments lend flexibility to the lepidtrich." [DOI:10.1002/jmor.20161] synonym: "segment of fin ray" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000172 ! lepidotrichium [Term] id: UBERON:4300109 name: proximal segment of caudal ray def: "Lepidotrichial segment that is part of the proximal region of a caudal fin ray." [PHENOSCAPE] is_a: UBERON:4300108 ! lepidotrichial segment relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium [Term] id: UBERON:4300110 name: lateral ethmoid cartilage is_a: UBERON:0007844 ! cartilage element is_a: UBERON:4300111 ! lateral ethmoid element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300111 name: lateral ethmoid element def: "Endochondral element that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300112 name: distal segment of caudal ray def: "Lepidotrichial segment that is part of the distal region of a caudal fin ray." [PHENOSCAPE] is_a: UBERON:4300108 ! lepidotrichial segment relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium [Term] id: UBERON:4300114 name: pelvic sucking disc def: "An adhesive disk modified from the pelvic fins in, for example, clingfishes (Gobiesocidae), gobies (Gobiidae) and snailfishes (Liparidae)." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "adhesive disc" EXACT [] synonym: "pelvic fin sucking disc" EXACT [] synonym: "sucking disc" BROAD [] synonym: "ventral sucking disc" EXACT [] is_a: UBERON:0000152 ! pelvic fin relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300115 name: sucking disc def: "Distinctive first dorsal fin taking the form of a modified oval sucker-like organ with slat-like structures that open and close to create suction and take a firm hold against the skin of larger marine animals." [http://en.wikipedia.org/wiki/Remora] comment: For discussion of the homology of the sucking disc and dorsal fin, see Britz and Johnson (2012) (DOI: 10.1002/jmor.20063). synonym: "sucking disk" EXACT [] is_a: UBERON:0003097 ! dorsal fin relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300116 name: dorsal fin ray def: "Soft ray that is part of the dorsal fin." [PHENOSCAPE] synonym: "dorsal fin soft ray" EXACT [] is_a: UBERON:4000177 ! dorsal fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300117 name: pelvic fin ray def: "Soft ray that is part of the pelvic fin." [PHENOSCAPE] synonym: "pelvic fin soft ray" EXACT [] is_a: UBERON:4000173 ! pelvic fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300119 name: glenoid region def: "Region surrounding the glenoid fossa on the scapulocoracoid." [PHENOSCAPE:AD] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] id: UBERON:4300120 name: spinous region of dorsal fin def: "Region of dorsal fin that is composed of spinous rays (vs soft rays)." [PHENOSCAPE:LJ] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003097 ! dorsal fin [Term] id: UBERON:4300121 name: zygantrum def: "A fossa on the posterior median part of the neural arch of a vertebra (as of a snake) that accommodates the zygosphene of the next vertebra." [PHENOSCAPE:JL] is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0010276 ! space in vertebral column relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003861 ! neural arch [Term] id: UBERON:4300122 name: obsolete postzygapophysis def: "Posteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets." [PHENOSCAPE:NI] is_obsolete: true replaced_by: UBERON:0001080 [Term] id: UBERON:4300123 name: pre-axial region def: "Anatomical region lying to the anterior or dorsal side of the metapterygial axis." [PHENOSCAPE:AD] is_a: UBERON:0010538 ! paired limb/fin segment relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004710 ! pectoral appendage [Term] id: UBERON:4300124 name: axis intercentrum def: "The intercentrum unit of the axis vertebra. ." [PHENOSCAPE] is_a: UBERON:4200194 ! intercentrum relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300125 name: dorsal iliac ridge def: "Ridge that is part of the ilium." [PHENOSCAPE:AD, WD] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001273 ! ilium [Term] id: UBERON:4300126 name: tectorial restraint system def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear. In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates) [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]." [PHENOSCAPE] is_a: UBERON:0000467 ! anatomical system relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:4300127 name: nuchal crest def: "Bony protuberance on the external surface of the occipital bone.[PHENOSCAPE:AD]." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0005902 ! occipital region [Term] id: UBERON:4300128 name: sacral rib def: "Elements of the sacrum joining true sacral vertebrae to pelvis [12th edition of Henderson's Dictionary of Biological terms]." [PHENOSCAPE] is_a: UBERON:0002228 ! rib is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0005179 ! pelvic region element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0005473 ! sacral region [Term] id: UBERON:4300129 name: dorsal pelvic gland def: "Cloacal glands that secrete into the dorsal roof of the cloacal tube and or the anterior cloacal chamber. Found in male salamanders." [http://www.jstor.org/stable/1466953] is_a: UBERON:0012478 ! cloacal gland relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300130 name: lateral pelvic gland comment: Cloacal gland present in males that secrete into the dorsolateral walls of the cloaca (between dorsal pelvic gland and anterior ventral pelvic gland clusters). Found in salamanders. {xref="http://www.jstor.org/stable/1466953"} is_a: UBERON:0012478 ! cloacal gland relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300132 name: glossopharyngeal nerve foramen def: "Foramen for the passage of the glossopharyngeal nerve IX." [PHENOSCAPE:WD] synonym: "nerve foramen IX" EXACT [] is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300133 name: upper jaw symphyseal region def: "The region of the upper jaw on or near the midline." [PHENOSCAPE:WD] synonym: "upper jaw symphysial region" EXACT [] is_a: UBERON:0001709 ! upper jaw region relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300134 name: lateral commissure def: "Region of the braincase which bears the facets for the hyomandibula in fishes. This region disappears in the origin of tetrapods and the space it occipied comes to contribute to the fenestra vestibulii. Clack, JA, 2001. Ch. 23, The otoccipital region. In Major Events in Early Vertebrate Evolution. Per Ahlberg editor." [PHENOSCAPE] is_a: UBERON:0000075 ! subdivision of skeletal system relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:4300135 name: upper jaw symphyseal tooth def: "Tooth of the upper jaw that is adjacent to the upper jaw symphysis." [PHENOSCAPE:WD] synonym: "upper jaw symphysial tooth" EXACT [] is_a: UBERON:0001091 ! calcareous tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300137 name: lingual region def: "The region of an anatomical structure (such as a tooth or jaw bone) facing the tongue." [PHENOSCAPE:WD] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:4300138 name: labial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the lips.[PHENOSCAPE:WD]." [PHENOSCAPE] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:4300139 name: posterolingual region def: "The region of an anatomical structure, such as a tooth or jaw bone, oriented posteriorly and facing the lips." [PHENOSCAPE:WD] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:4300140 name: mesial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the midline of the jaw." [PHENOSCAPE:WD] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300142 name: internal carotid foramen def: "Foramen for the passage of the internal carotid artery." [PHENOSCAPE] is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300143 name: anal fin radial skeleton synonym: "anal fin radial series" EXACT [] is_a: UBERON:4440008 ! fin radial skeleton relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000166 ! anal fin skeleton [Term] id: UBERON:4300144 name: profundus foramen def: "Foramen for the profundus or ophthalmic nerve." [PHENOSCAPE:AD] is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300147 name: pectoral fin base def: "Subdivision of organism that is the basal region of the pectoral fin." [PHENOSCAPE:WD] is_a: UBERON:0010538 ! paired limb/fin segment relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000151 ! pectoral fin [Term] id: UBERON:4300150 name: gill membrane def: "Membrane organ that is usually supported by branchiostegal rays and forms the ventral and posterior wall of the gill cavity." [PHENOSCAPE:WD] synonym: "branchiostegal membrane" RELATED [] is_a: UBERON:0000094 ! membrane organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300151 name: pelvic intercleithral cartilage def: "Cartilage element that lies between processes of the cleithrum and pelvic girdle in gobioid fishes. Posterodorsal to the ventral end of each cleithrum is a posteriorly projecting process. The pelvic intercleithral cartilage (an unpaired, median structure) forms a bridge between the processes (From Springer, 1983)." [http://www.sil.si.edu/smithsoniancontributions/Zoology/pdf_hi/SCTZ-0390.pdf] is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] id: UBERON:4300152 name: accessory nasal sac def: "Accessory nasal sacs are found in a variety of teleosts (Webb, 1993) and likely assist in ventilating the olfactory epithelium by transmitting pressure fluctuations associated with gill irrigation from theoral cavity to the nasal (or sensory) sac (Jakubowski,1975; Webb, 1993; Belanger et al., 2003). [def from Eastman, J. T. and Lannoo, M. J. (2004)]." [DOI:10.1002/jmor.10221] is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300153 name: Sharpey's fiber def: "Sharpey's fibres (bone fibres, or perforating fibres) are a matrix of connective tissue consisting of bundles of strong collagenous fibres connecting periosteum to bone. They are part of the outer fibrous layer of periosteum, entering into the outer circumferential and interstitial lamellae of bone tissue." [https://en.wikipedia.org/wiki/Sharpey%27s_fibres] is_a: UBERON:0002384 ! connective tissue relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300154 name: procurrent spur def: "A ventrally projecting spur on the posteriormost ventral procurrent caudal ray overlapping ventrally the preceding ray in various percomorphs (Johnson, 1975)." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2001830 ! caudal fin ventral procurrent ray [Term] id: UBERON:4300155 name: pectoral splint def: "Unpaired bone that covers the base of the first pectoral ray. [Filleul and Lavoué 2001]." [PMID:11386087] is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:0004376 ! fin bone is_a: UBERON:0010741 ! bone of pectoral complex relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0010710 ! pectoral fin skeleton [Term] id: UBERON:4300156 name: anterodorsal crest is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] id: UBERON:4300157 name: midshaft def: "Region in the middle of the shaft of a long bone (e.g. humerus, femur etc)." [PHENOSCAPE:NI] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:4300158 name: ectepicondylar depression is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus [Term] id: UBERON:4300159 name: obsolete larval pelvic fin is_obsolete: true [Term] id: UBERON:4300160 name: obsolete larval pectoral fin is_obsolete: true [Term] id: UBERON:4300172 name: pectoral fin bud def: "A paired fin bud that develops into a pectoral fin." [PHENOSCAPE] is_a: UBERON:0002531 ! paired fin bud is_a: UBERON:0005419 ! pectoral appendage bud relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300173 name: pelvic fin bud def: "A paired fin bud that develops into a pelvic fin." [PHENOSCAPE] is_a: UBERON:0002531 ! paired fin bud relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300174 name: actinopterygian pyloric caecum def: "A finger-like out-pocketing of the intestine where it meets the end of the stomach (pylorus). Also spelled cecum (ceca). Serves to aid digestion." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "pyloric appendage" EXACT [TAO:0002253] synonym: "pyloric caeca" EXACT OMO:0003004 [] synonym: "pyloric caecum" EXACT [] xref: TAO:0002253 is_a: UBERON:0009854 ! digestive tract diverticulum relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 property_value: editor_note "See https://github.com/obophenotype/uberon/issues/368" xsd:string [Term] id: UBERON:4300175 name: procumbent dorsal fin spine def: "Fin spine that precedes the dorsal fin, oriented anteriorly towards the head of the fish." [PHENOSCAPE] is_a: UBERON:2002261 ! dorsal fin spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300176 name: parietal branch of the supraorbital canal def: "Branch of supraorbital sensory canal that extends to the parietal." [PHENOSCAPE] is_a: UBERON:2001612 ! sensory canal relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2001873 ! head sensory canal system [Term] id: UBERON:4300177 name: replacement tooth row def: "Tooth row consisting of replacement teeth." [PHENOSCAPE] is_a: UBERON:0009678 ! tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300178 name: inner tooth row of dentary def: "Dentary tooth row that is lingual in position relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001952 ! dentary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300179 name: inner tooth row of premaxilla def: "Tooth row on the premaxilla that is lingually located relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001833 ! premaxillary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300180 name: isthmus def: "The fleshy throat region of a fish which extends forward from the ventral part of the chest and narrows anteriorly, and externally separating the two gill chambers; that narrowed portion of the breast which lies between the gill chambers and separates them." [PHENOSCAPE] {comment="http://www.fishbase.org/glossary/Glossary.php?q=isthmus"} is_a: UBERON:0034929 ! external soft tissue zone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300181 name: posterior sclerotic cartilage def: "Sclerotic cartilage that is located posterior to the eye." [PHENOSCAPE] is_a: UBERON:0010289 ! scleral cartilage relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300182 name: anterior sclerotic cartilage def: "Sclerotic cartilage that is located anterior to the eye." [PHENOSCAPE] is_a: UBERON:0010289 ! scleral cartilage relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300184 name: neural spine 5 def: "Neural spine that is associated with the fifth vertebra." [PHENOSCAPE] is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300185 name: neural spine 6 def: "Neural spine that is associated with the sixth vertebra." [PHENOSCAPE] is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300186 name: neural spine 7 def: "Neural spine that is associated with the seventh vertebra." [PHENOSCAPE] is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300187 name: obsolete buccopharyngeal complex is_obsolete: true consider: UBERON:0000167 [Term] id: UBERON:4300188 name: terminal scale def: "The posteriormost scale in a scale series." [PHENOSCAPE:WD] is_a: UBERON:0007380 ! dermal scale relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300189 name: parapophysis 3 def: "Parapophysis that is the lateral projection from the third centrum. Parapophysis 3 is bilaterally paired." [PHENOSCAPE:WD] is_a: UBERON:0003109 ! parapophysis [Term] id: UBERON:4300190 name: claustrum element def: "Postcranial axial skeletal element and Weberian ossicle that is located dorsal to the scaphium. The claustrum skeletal element is bilaterally paired." [PHENOSCAPE] is_a: UBERON:0010363 ! endochondral element is_a: UBERON:2000461 ! Weberian ossicle relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:4300192 name: branched pelvic fin ray def: "Pelvic fin lepidotrichium that is distally branched and segmented." [PHENOSCAPE] is_a: UBERON:4300117 ! pelvic fin ray relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300193 name: unbranched anal fin ray def: "Anal fin lepidotrichium that is not distally branched." [PHENOSCAPE:WD] is_a: UBERON:4500006 ! anal fin ray relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300194 name: photophore def: "A light-emitting organ which appears as luminous spots on various marine animals, including fish and cephalopods." [PHENOSCAPE] {comment="https://en.wikipedia.org/wiki/Photophore"} xref: BTO:0001477 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: never_in_taxon NCBITaxon:314146 [Term] id: UBERON:4300195 name: rostral tubule def: "Consists of a set of tubuli occupying the space between the external dermal bones above the dorsal and anterior wal of the nasal capsule below. Thomson and Campbell (1971)." [PHENOSCAPE:AD] synonym: "rostral tubuli" EXACT OMO:0003004 [] is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:4300196 name: processus descendens of sphenoid synonym: "otico-sphenoid bridge" EXACT [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:4300197 name: Westoll line def: "More or less concentric lines of discontinuity in the cosmine of Dipnoi, probably due to cyclic resorption and redeposition during growth occurring on the bases of individual scales and also as large structures between headshield plates.[Fishbase]." [https://www.fishbase.de/glossary/Glossary.php?q=Westoll+lines] synonym: "Westoll lines" EXACT OMO:0003004 [] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:4000087 ! cosmine [Term] id: UBERON:4300198 name: epichordal radial def: "Radial found above the vertebral column." [PHENOSCAPE:AD] is_a: UBERON:2100271 ! radial element [Term] id: UBERON:4300199 name: postsplenial def: "Dermal bone of the lower jaw." [PHENOSCAPE] is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 ! dermal bone [Term] id: UBERON:4300200 name: postparietal shield def: "Dermal bones (postparietals, supratemporals, intertemporals, extrascapulars) posterior to the intracranial joint. Forey 1997." [ISBN:978-0-412-78480-4] synonym: "parietal shield" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0010323 ! cranial skeletal system [Term] id: UBERON:4300201 name: subepiotic fossa def: "Fossa for epaxial musculature inserting on the braincase. Forey et al. 1996." [ISBN:978-0-12-670950-6] is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:4300202 name: endoskeletal cranial joint def: "The braincase of most plesiomorphic sarcopterygians is divided by the intracranial point into ethmosphenoid and otic-occipital portions each covered by dermal bones. The function of the joint is presumably to increase the gape of the mouth rapidly during opening phases. (Forey 1997)." [ISBN:978-0-412-78480-4] synonym: "endoskeletal intracranial joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:4300203 name: tectum orbitale def: "The dorsal portion of the endocranium that covers the orbital region. Hanken and Hall (1993)." [ISBN:9780226315706] is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:4300204 name: obsolete accessory nasal sac def: "Structures that communicate with the main olfactory chamber and may be located posterior, ventral, or dorsal to it [De Pinna, 1996]." [PHENOSCAPE] comment: Duplicate term. is_obsolete: true replaced_by: UBERON:4300152 [Term] id: UBERON:4300205 name: palato-maxillary ligament def: "Ligament between the palatine and maxilla [Stiassny 1986]." [PHENOSCAPE] is_a: UBERON:0000211 ! ligament relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300206 name: mandibulo-lacrimal ligament def: "Ligament that connects the ventromedial end of the lacrimal to the anguloarticular (or 'mandible'). Parenti (2008)." [PHENOSCAPE] is_a: UBERON:0000211 ! ligament relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300207 name: submandibular bone comment: See Gardiner (1984) for discussion of possible homology with branchiostegal rays. Gardiner, B. G. (1984). The Relationships of the palaeoniscid fishes: a review based on new specimens of Mimia and Moythomasia from the Upper Devonian of Western Australia. Bulletin of the British Museum of Natural History (Geology), 37(4), 173-428. is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:4300208 ! submandibular series [Term] id: UBERON:4300208 name: submandibular series def: "A series of plate like bones found ventrally to the jaw." [PHENOSCAPE:AD] is_a: UBERON:0000477 ! anatomical cluster relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300209 name: palato-vomerine ligament synonym: "palatovomerine ligament" EXACT [] is_a: UBERON:0000211 ! ligament relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300210 name: transversus epibranchialis 2 def: "Dorsal gill-arch muscle connecting right and left epibranchial 2s. Springer and Johnson (2015)." [https://doi.org/10.1643/CI-14-152] is_a: UBERON:0000933 ! chordate pharyngeal muscle relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300211 name: lateral plate def: "Body plates on the lateral sides of the body that occur as single bilateral rows and their number is highly heritable. Bell and Richkind (1981)." [https://doi.org/10.1086/283693] is_a: UBERON:2002053 ! bony plate [Term] id: UBERON:4300212 name: acrodin def: "Odontoid tissue forming a cap on teeth found in teeth of actinopterygian fishes." [http://www.fishbase.org/glossary/Glossary.php?q=acrodin] is_a: UBERON:0010365 ! odontoid tissue [Term] id: UBERON:4300213 name: supraneural 1 element def: "Postcranial axial skeletal element located dorsal to vertebra 1." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300214 name: supraneural 2 element def: "Postcranial axial skeletal element located dorsal to vertebra 2." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300215 name: supraneural 3 element def: "Postcranial axial skeletal element located dorsal to vertebrae 3 and 4." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300216 name: supraneural 4 element def: "Supraneural element dorsal to neural spine 4." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300217 name: supraneural 5 element def: "Supraneural element dorsal to neural spine 5." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300218 name: supraneural 6 element def: "Supraneural element dorsal to neural spine 6." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300219 name: supraneural 7 element def: "Supraneural element dorsal to neural spine 7." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300220 name: supraneural 8 element def: "Supraneural element dorsal to neural spine 8." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300221 name: supraneural 9 element def: "Supraneural element dorsal to neural spine 9." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300222 name: axilar scale def: "Scale that is adjacent to the pelvic fin and aligned with the origin of the pelvic fin. It is typically an elongate scale.[Mattox and Toledo-Piza 2012]." [https://doi.org/10.1111/j.1096-3642.2012.00830.x] is_a: UBERON:0007380 ! dermal scale relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300223 name: precaudal vertebra def: "Vertebral bone lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. Bird and Mabee, 2003." [https://doi.org/10.1002/dvdy.10387] xref: TAO:0000263 xref: ZFA:0000263 is_a: UBERON:0002412 ! vertebra is_a: UBERON:4300224 ! precaudal vertebra endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300224 name: precaudal vertebra endochondral element def: "Vertebral elements lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.(Bird and Mabee, 2003)." [https://doi.org/10.1002/dvdy.10387] is_a: UBERON:0010913 ! vertebral element [Term] id: UBERON:4300225 name: precaudal vertebra cartilage element def: "Vertebral cartilage elements lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.(Bird and Mabee, 2003)." [https://doi.org/10.1002/dvdy.10387] is_a: UBERON:0011094 ! vertebra cartilage element is_a: UBERON:4300224 ! precaudal vertebra endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300226 name: forelimb bud mesenchyme def: "Mesenchyme that is part of a forelimb bud." [PHENOSCAPE] is_a: UBERON:0003413 ! pectoral appendage bud mesenchyme is_a: UBERON:0010328 ! limb bud mesenchyme relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0005417 ! forelimb bud [Term] id: UBERON:4300227 name: hindlimb bud mesenchyme def: "Mesenchyme that is part of a hindlimb bud." [PHENOSCAPE] is_a: UBERON:0003412 ! pelvic appendage bud mesenchyme is_a: UBERON:0010328 ! limb bud mesenchyme relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0005418 ! hindlimb bud [Term] id: UBERON:4300228 name: pectoral fin bud mesenchyme def: "Mesechyme that is part of a pectoral fin bud." [PHENOSCAPE] is_a: UBERON:0003413 ! pectoral appendage bud mesenchyme relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4300172 ! pectoral fin bud [Term] id: UBERON:4300229 name: pelvic fin bud mesenchyme def: "Mesechyme that is part of a pelvic fin bud." [PHENOSCAPE] is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4300173 ! pelvic fin bud [Term] id: UBERON:4300230 name: forelimb wing bud def: "A wing bud that develops into a wing." [PHENOSCAPE] is_a: UBERON:0005417 ! forelimb bud relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300231 name: forelimb wing bud mesenchyme def: "Mesenchyme that is part of a forelimb wing bud." [PHENOSCAPE] is_a: UBERON:4300226 ! forelimb bud mesenchyme relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4300230 ! forelimb wing bud [Term] id: UBERON:4300233 name: mammiliform tooth def: "Calcareous tooth with a hyptertrophied base." [http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252004000300008] is_a: UBERON:0001091 ! calcareous tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300234 name: scale sheath def: "Series of scales in which each scale envelopes or overlaps an adjacent scale." [PHENOSCAPE:WD] is_a: UBERON:0000477 ! anatomical cluster relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300235 name: spinoid scale def: "A cycloid scale bearing a serrated margin; superficially similar to ctenoid scales but having spines as outgrowths of the scale as oppose to true ctenii." [http://www.fishbase.se/glossary/Glossary.php?q=spinoid+scale] is_a: UBERON:2002285 ! cycloid scale relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300236 name: rib of vertebra 7 def: "Rib that articulates with the parapophysis of the seventh centrum." [PHENOSCAPE] is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300237 name: rib of vertebra 8 def: "Rib that articulates with the parapophysis of the eighth centrum." [PHENOSCAPE] is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300238 name: pored lateral line scale is_a: UBERON:2001824 ! lateral line scale relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300239 name: hind flipper def: "Hindlimb that is used to propel an animal through water." [PHENOSCAPE] synonym: "hindflipper" EXACT [] is_a: UBERON:0002103 ! hindlimb relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300240 name: rostral ossicle def: "Ossicle that surrounds the sensory canals of the snout when passing from the ethmoidal commissure to the infraorbital series and have first been noticed by Nybelin [14] in Elops. From: Filleul and Lavoué. (2001). Basal teleosts and the question of elopomorph monophyly. Morphological and molecular approaches. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 324. 393-9. 10.1016/S0764-4469(00)01302-0." [PHENOSCAPE] is_a: UBERON:0010911 ! ossicle relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300241 name: ethmoid commissure def: "Sensory canal that traverses the rostral bone." [PHENOSCAPE] synonym: "ethmoid lateral line commissure" EXACT [] is_a: UBERON:2001612 ! sensory canal relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300242 name: lateral line scale 6 def: "The sixth scale in the lateral line series." [PHENOSCAPE] is_a: UBERON:2001824 ! lateral line scale relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300243 name: premaxillary tooth 2 def: "Premaxillary tooth that is the second tooth in a premaxillary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] is_a: UBERON:2001626 ! premaxillary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300244 name: premaxillary tooth 3 def: "Premaxillary tooth that is the third tooth in a premaxillary tooth series, and positioned adjacent to the second tooth." [PHENOSCAPE] is_a: UBERON:2001626 ! premaxillary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300246 name: dentary tooth 2 def: "Dentary tooth that is the second tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] is_a: UBERON:0011594 ! dentary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300247 name: dentary tooth 3 def: "Dentary tooth that is the third tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] is_a: UBERON:0011594 ! dentary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300248 name: fused hypural 1 and 2 def: "Single hypural element formed from the fusion of hypural 1 and 2." [PHENOSCAPE] is_a: UBERON:2000364 ! hypural relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300249 name: lateral occipital foramen def: "Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development. [database_cross_reference: GOC:cvs][database_cross_reference: https://orcid.org/0000-0002-2244-7917][database_cross_reference: ZFIN:ZDB-PUB-961014-192]." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005892 is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001693 ! exoccipital bone [Term] id: UBERON:4300250 name: ventral caudal procurrent ray 3 is_a: UBERON:2001830 ! caudal fin ventral procurrent ray [Term] id: UBERON:4300251 name: ventral caudal procurrent ray 4 is_a: UBERON:2001830 ! caudal fin ventral procurrent ray [Term] id: UBERON:4300252 name: ethmo-palatine cartilage def: "The ethmo-palatine cartilage (EPC) is a distinct body situated between the posterior surface of the upper arm of the premaxilla and the anterior margin of the palatine. There is usually only a single cartilage mass lying between these bones, although that cartilage is apparently subdivided into two units in some taxa (e.g., the Old World characiform family Citharinidae, Vari, 1979:294). Vari 1989a." [https://doi.org/10.5479/si.00810282.471] is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0011085 ! palatoquadrate arch [Term] id: UBERON:4300261 name: pectoral fin hook def: "Process that is part of the pectoral fin lepidotrichium." [PHENOSCAPE] is_a: UBERON:4300284 ! fin hook relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium [Term] id: UBERON:4300262 name: pelvic fin hook def: "Process that is part of the pelvic fin lepidotrichium." [PHENOSCAPE] is_a: UBERON:4300284 ! fin hook relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000173 ! pelvic fin lepidotrichium [Term] id: UBERON:4300263 name: supraneural 4 cartilage is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300216 ! supraneural 4 element [Term] id: UBERON:4300264 name: supraneural 5 cartilage is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300217 ! supraneural 5 element [Term] id: UBERON:4300265 name: supraneural 6 cartilage is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300218 ! supraneural 6 element [Term] id: UBERON:4300266 name: supraneural 7 cartilage is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300219 ! supraneural 7 element [Term] id: UBERON:4300267 name: supraneural 8 cartilage is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300220 ! supraneural 8 element [Term] id: UBERON:4300268 name: supraneural 9 cartilage is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300221 ! supraneural 9 element [Term] id: UBERON:4300269 name: epioccipital bridge def: "Extension of the exoccipital that extends over the posttemporal fossa." [http://dx.doi.org/10.1590/S1679-62252010000300001] synonym: "epiotic bridge" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2001412 ! epiotic [Term] id: UBERON:4300270 name: outer tooth row of premaxilla def: "Tooth row on the premaxilla that is labially located relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001833 ! premaxillary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300271 name: interneural spine cartilage def: "Cartilage element adjacent to neural spine of preural centrum." [PHENOSCAPE] synonym: "CINPU" EXACT [] is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:4000167 ! caudal fin skeleton [Term] id: UBERON:4300272 name: interhaemal spine cartilage def: "Cartilage element adjacent to haemal spine of preural centrum." [PHENOSCAPE] synonym: "CIHPU" EXACT [] is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:4000167 ! caudal fin skeleton [Term] id: UBERON:4300274 name: adipose fin ray def: "Soft ray that is part of the adipose fin." [https://doi.org/10.1098/rspb.2013.3120] is_a: UBERON:4500008 ! median fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4500004 ! adipose fin skeleton [Term] id: UBERON:4300275 name: suborbital stay def: "A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]." [https://en.wikipedia.org/wiki/Scorpaeniformes] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001408 ! infraorbital 3 [Term] id: UBERON:4300279 name: outer tooth row of dentary def: "Dentary tooth row that is labial in position relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001952 ! dentary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300280 name: metapterygoid tooth def: "Tooth that is attached to the metapterygoid." [PHENOSCAPE] synonym: "metapterygoid teeth" RELATED [] is_a: UBERON:0001091 ! calcareous tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300281 name: dorsal fin hook def: "Anatomical projection that is part of the anal fin lepidotrichium." [PHENOSCAPE] synonym: "dorsal-fin hook" EXACT [] is_a: UBERON:4300284 ! fin hook relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000177 ! dorsal fin lepidotrichium [Term] id: UBERON:4300282 name: dorsal myorhabdoid bone def: "Myorhabdoid bones located dorsal to the epineurals." [PHENOSCAPE] {comment="https://doi.org/10.1111/cla.12345"} is_a: UBERON:2002127 ! myorhabdoid bone [Term] id: UBERON:4300283 name: ventral myorhabdoid bone def: "Myorhabdoid bones located ventral to the epipleurals." [PHENOSCAPE] {comment="https://doi.org/10.1111/cla.12345"} is_a: UBERON:2002127 ! myorhabdoid bone [Term] id: UBERON:4300284 name: fin hook def: "Anatomical projection that is part of a fin." [PHENOSCAPE] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000172 ! lepidotrichium [Term] id: UBERON:4300285 name: second preethmoid cartilage def: "Cartilage element found between the preethmoid and maxilla." [PHENOSCAPE] is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:4300286 ! second preethmoid element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300286 name: second preethmoid element def: "Endochondral skeletal element found between the preethmoid and maxilla." [PHENOSCAPE] is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003112 ! olfactory region [Term] id: UBERON:4300287 name: nasal barbel def: "Barbel that is associated with a nostril. Nasal barbels are paired." [PHENOSCAPE] is_a: UBERON:2000622 ! barbel relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300288 name: rictal barbel def: "Barbel located from the fleshy corner of the mouth." [PHENOSCAPE] comment: Definition needs review. Rictal barbels are described for trichomycterids and other catfishes. is_a: UBERON:2000622 ! barbel relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4400000 name: metapterygium cartilage def: "The posterior and innermost of the three principal basal cartilages in the fins of fishes." [http://www.thefreedictionary.com/Metapterygium] comment: Relevant to Elasmobranchii and Holocephali. It is usually the longest basal and is exceptionally long in males where it is distally modified into a clasper. {xref="http://www.briancoad.com/dictionary/DicPics/metapterygium.htm"} is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage is_a: UBERON:4300082 ! metapterygium element [Term] id: UBERON:4400001 name: ceratotrichium def: "Elastoidin fin ray that is thickened, generally unbranched and found in the fins of Chondrichthyes." [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] is_a: UBERON:4400006 ! elastoidin fin ray relationship: develops_from UBERON:0003104 ! mesenchyme [Term] id: UBERON:4400005 name: fin ray def: "A rod-like entity that functions in support of fin folds and fins." [PHENOSCAPE:pm] is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0008897 ! fin [Term] id: UBERON:4400006 name: elastoidin fin ray def: "Fin ray that is composed of elastoidin, unmineralized, and unsegmented." [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] is_a: UBERON:4400005 ! fin ray [Term] id: UBERON:4400007 name: camptotrichium def: "Fin ray found in dipnoans that are composed of a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (Géraudie and Meunier 1982)." [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] comment: From Witten & Huysseune (2007): 'Two zones have been recognized in these camptotrichia: a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (Géraudie and Meunier 1982).' is_a: UBERON:4300037 ! bony fin ray [Term] id: UBERON:4400009 name: obsolete paired fin radial comment: Was already defined is_obsolete: true replaced_by: UBERON:1500006 [Term] id: UBERON:4440008 name: fin radial skeleton synonym: "fin radial series" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0012353 ! fin skeleton [Term] id: UBERON:4440009 name: pectoral fin radial skeleton synonym: "pectoral fin radial series" EXACT [] is_a: UBERON:4300013 ! paired fin radial skeleton relationship: part_of UBERON:0010710 ! pectoral fin skeleton [Term] id: UBERON:4440010 name: pelvic fin radial skeleton synonym: "pelvic fin radial series" EXACT [] is_a: UBERON:4300013 ! paired fin radial skeleton relationship: part_of UBERON:0010711 ! pelvic fin skeleton [Term] id: UBERON:4440011 name: paired fin lepidotrichium def: "Lepidotrichium that is part of a paired fin." [PHENOSCAPE] is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:4000172 ! lepidotrichium relationship: part_of UBERON:0010713 ! paired fin skeleton [Term] id: UBERON:4450000 name: medial prefrontal cortex def: "The medial prefrontal cortex (mPFC) is a subdivision of the prefrontal cortex composed of BA12, BA25, and anterior cingulate cortex: BA32, BA33, BA24. Within this region is the dorsal nexus, which interconnects multiple brain networks and plays a role in maintenance and manipulation of information (working memory), as well as supporting the control of cognitive functions such as emotion processing and regulation, memory, decision making, and conflict resolution." [https://orcid.org/0000-0001-7628-5565, https://orcid.org/0000-0002-4964-5083, Wikipedia:Prefrontal_cortex] synonym: "mPFC" EXACT OMO:0003000 [] is_a: UBERON:0002616 ! regional part of brain relationship: dc-contributor https://orcid.org/0000-0001-7628-5565 relationship: dc-contributor https://orcid.org/0000-0002-4964-5083 relationship: part_of UBERON:0000451 ! prefrontal cortex creation_date: 2025-04-23 [Term] id: UBERON:4500002 name: upper uroneural def: "Uroneurals that form the uppermost three uroneural series that overlap, and lie at an angle to, longer anterior ones." [http://hdl.handle.net/2246/1224] is_a: UBERON:2000602 ! uroneural relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:4500003 name: predorsal scale def: "Scale that is part of row along the midline between the dorsal fin and the back of the skull. In counting, all scales crossing the midline are included. (Fishbase) ." [PHENOSCAPE] is_a: UBERON:0007380 ! dermal scale relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:4500004 name: adipose fin skeleton def: "Median fin skeleton supporting the adipose fin." [PHENOSCAPE] is_a: UBERON:4000170 ! median fin skeleton relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:2000251 ! adipose fin [Term] id: UBERON:4500005 name: prenasal ossicle def: "Tubular ossifications around extension of nasal lateral line canal in fishes; typically one or two." [PHENOSCAPE] is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 property_value: provenance_notes "One or two tubular ossifications (prenasals) around extension of nasal canal in Carangiformes (Freihofer 1978, Smith-Vaniz 1984, Johnson 1984; found elsewhere only in Toxotidae of Perciformes) and some Elopomorpha from Wiley and Johnson, 2010. Wiley, E.O. & Johnson, G.D. 2010. A teleost classification based on monophyletic groups. In J.S. Nelson, H.-P. Schultze & M.V.H. Wilson (eds.), Origin and Phylogenetic Interrelationships of Teleosts. Verlag Dr. Friedrich Pfeil, München, Germany: 123-182." xsd:string [Term] id: UBERON:4500006 name: anal fin ray def: "Soft ray that is part of the anal fin." [PHENOSCAPE] synonym: "anal fin soft ray" EXACT [] is_a: UBERON:4000176 ! anal fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:4500007 name: pectoral fin ray def: "Soft ray that is part of the pectoral fin." [PHENOSCAPE] synonym: "pectoral fin soft ray" EXACT [] is_a: UBERON:4000175 ! pectoral fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:4500008 name: median fin lepidotrichium def: "Lepidotrichium that is part of a median fin." [PHENOSCAPE] is_a: UBERON:4000172 ! lepidotrichium relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:4000170 ! median fin skeleton [Term] id: UBERON:4500009 name: paired fin spine def: "Fin spine that is part of a paired fin." [PHENOSCAPE] is_a: UBERON:4200075 ! fin spine is_a: UBERON:4440011 ! paired fin lepidotrichium relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:4500010 name: unbranched pectoral fin ray def: "Pectoral fin lepidotrichium that is not distally branched." [PHENOSCAPE] synonym: "pectoral fin unbranched ray" EXACT [] is_a: UBERON:4500007 ! pectoral fin ray relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:4500011 name: unbranched pelvic fin ray def: "Pelvic fin lepidotrichium that is not distally branched." [PHENOSCAPE] synonym: "pelvic fin unbranched ray" EXACT [] is_a: UBERON:4300117 ! pelvic fin ray relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:4500012 name: hypobranchial series def: "Anatomical cluster that consists of the hypobranchial elements within an individual." [PHENOSCAPE] is_a: UBERON:0000477 ! anatomical cluster relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] id: UBERON:4500013 name: pharyngobranchial series def: "Anatomical cluster that consists of the pharyngobranchial elements within an individual." [PHENOSCAPE] is_a: UBERON:0000477 ! anatomical cluster relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] id: UBERON:4500014 name: basibranchial series def: "Anatomical cluster that consists of the basibranchial elements within an individual." [PHENOSCAPE] is_a: UBERON:0000477 ! anatomical cluster relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] id: UBERON:4500016 name: premaxilla articular process def: "Pharyngeal arch bone immediately posterior to the ascending process, the medial surface of which articulates with the anterior end of the maxillary." [PHENOSCAPE] comment: The change from a premaxilla in which the ascending and articular processes are separate to one in which they are firmly united has occurred many times in higher teleosts. - Gosline, 1987 (Jaw Structures and Movements in Higher Teleostean Fishes) synonym: "articular process of the premaxilla" EXACT [] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0002244 ! premaxilla [Term] id: UBERON:4500017 name: interarcual bone def: "Pharyngeal arch bone located between uncinate process of epibranchial 1 and pharyngobranchial 2." [PHENOSCAPE] is_a: UBERON:0002513 ! endochondral bone relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: develops_from UBERON:2002269 ! interarcual cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] id: UBERON:4500018 name: premaxilla maxillary process def: "Process of the premaxilla that extends upward, and often lies against the medial surface of the maxillary." [PHENOSCAPE] synonym: "postmaxillary process" EXACT [] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0002244 ! premaxilla [Term] id: UBERON:4500020 name: pelvic fin distal radial cartilage def: "Pelvic fin distal radial element that is composed of cartilage tissue." [PHENOSCAPE] is_a: UBERON:1600008 ! pelvic fin distal radial element is_a: UBERON:1700006 ! paired fin radial cartilage is_a: UBERON:2001538 ! pelvic radial cartilage relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 [Term] id: UBERON:5001463 name: manual digit 1 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit I plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002389 ! manual digit plus metapodial segment is_a: UBERON:5006048 ! digit 1 plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5001466 name: pedal digit plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5002544 ! digit plus metapodial segment relationship: part_of UBERON:0002387 ! pes property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5002389 name: manual digit plus metapodial segment def: "A subdivision of the autopod consisting of manual digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5002544 ! digit plus metapodial segment relationship: part_of UBERON:0002102 ! forelimb property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5002544 name: digit plus metapodial segment def: "A subdivision of the autopod consisting of digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0012140 ! digitopodium region property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003622 name: manual digit 2 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit II plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002389 ! manual digit plus metapodial segment is_a: UBERON:5006049 ! digit 2 plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003623 name: manual digit 3 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit III plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002389 ! manual digit plus metapodial segment is_a: UBERON:5006050 ! digit 3 plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003624 name: manual digit 4 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit IV plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002389 ! manual digit plus metapodial segment is_a: UBERON:5006051 ! digit 4 plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003625 name: manual digit 5 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit V plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002389 ! manual digit plus metapodial segment is_a: UBERON:5006052 ! digit 5 plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003631 name: pedal digit 1 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit I plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment is_a: UBERON:5006048 ! digit 1 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003632 name: pedal digit 2 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit II plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment is_a: UBERON:5006049 ! digit 2 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003633 name: pedal digit 3 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit III plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment is_a: UBERON:5006050 ! digit 3 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003634 name: pedal digit 4 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit IV plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment is_a: UBERON:5006051 ! digit 4 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5003635 name: pedal digit 5 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit V plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment is_a: UBERON:5006052 ! digit 5 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5006048 name: digit 1 plus metapodial segment def: "A subdivision of the autopod consisting of digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit I plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5006049 name: digit 2 plus metapodial segment def: "A subdivision of the autopod consisting of digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit II plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5006050 name: digit 3 plus metapodial segment def: "A subdivision of the autopod consisting of digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit III plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5006051 name: digit 4 plus metapodial segment def: "A subdivision of the autopod consisting of digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit IV plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5006052 name: digit 5 plus metapodial segment def: "A subdivision of the autopod consisting of digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "digit V plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5011981 name: manual digit 6 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VI plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0016866 ! digit 6 plus metapodial segment is_a: UBERON:5002389 ! manual digit plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5011982 name: manual digit 7 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0016867 ! digit 7 plus metapodial segment is_a: UBERON:5002389 ! manual digit plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5011983 name: manual digit 8 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VIII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0016868 ! digit 8 plus metapodial segment is_a: UBERON:5002389 ! manual digit plus metapodial segment relationship: part_of UBERON:0002398 ! manus property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5011984 name: pedal digit 6 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VI plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5012137 name: pedal digit 7 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5012138 name: pedal digit 8 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8 ray" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VIII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5001466 ! pedal digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5012260 name: alular digit plus metapodial segment def: "A subdivision of the autopod consisting of alular digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "alular digit" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "alular digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "alular digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "alular digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5002389 ! manual digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5012261 name: manual major digit (Aves) plus metapodial segment def: "A subdivision of the autopod consisting of manual major digit (Aves) plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual major digit (Aves)" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual major digit (Aves) ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual major digit (Aves) digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual major digit (Aves) ray" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5002389 ! manual digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5012262 name: manual minor digit (Aves) plus metapodial segment def: "A subdivision of the autopod consisting of manual minor digit (Aves) plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] synonym: "manual minor digit (Aves)" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual minor digit (Aves) ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual minor digit (Aves) digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "manual minor digit (Aves) ray" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5002389 ! manual digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit." xsd:string {source="https://github.com/obophenotype/uberon/issues/458"} [Term] id: UBERON:5101463 name: manual digit 1 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102389 ! manual digit digitopodial skeleton is_a: UBERON:5106048 ! digit 1 digitopodial skeleton relationship: part_of UBERON:5001463 ! manual digit 1 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5101466 name: pedal digit digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:5001466 ! pedal digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5102389 name: manual digit digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:5002389 ! manual digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5102544 name: individual digit of digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of a single digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0012150 ! skeleton of digitopodium relationship: part_of UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103622 name: manual digit 2 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102389 ! manual digit digitopodial skeleton is_a: UBERON:5106049 ! digit 2 digitopodial skeleton relationship: part_of UBERON:5003622 ! manual digit 2 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103623 name: manual digit 3 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102389 ! manual digit digitopodial skeleton is_a: UBERON:5106050 ! digit 3 digitopodial skeleton relationship: part_of UBERON:5003623 ! manual digit 3 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103624 name: manual digit 4 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102389 ! manual digit digitopodial skeleton is_a: UBERON:5106051 ! digit 4 digitopodial skeleton relationship: part_of UBERON:5003624 ! manual digit 4 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103625 name: manual digit 5 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102389 ! manual digit digitopodial skeleton is_a: UBERON:5106052 ! digit 5 digitopodial skeleton relationship: part_of UBERON:5003625 ! manual digit 5 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103631 name: pedal digit 1 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton is_a: UBERON:5106048 ! digit 1 digitopodial skeleton relationship: part_of UBERON:5003631 ! pedal digit 1 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103632 name: pedal digit 2 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton is_a: UBERON:5106049 ! digit 2 digitopodial skeleton relationship: part_of UBERON:5003632 ! pedal digit 2 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103633 name: pedal digit 3 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton is_a: UBERON:5106050 ! digit 3 digitopodial skeleton relationship: part_of UBERON:5003633 ! pedal digit 3 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103634 name: pedal digit 4 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton is_a: UBERON:5106051 ! digit 4 digitopodial skeleton relationship: part_of UBERON:5003634 ! pedal digit 4 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5103635 name: pedal digit 5 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton is_a: UBERON:5106052 ! digit 5 digitopodial skeleton relationship: part_of UBERON:5003635 ! pedal digit 5 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5106048 name: digit 1 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:5006048 ! digit 1 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5106049 name: digit 2 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:5006049 ! digit 2 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5106050 name: digit 3 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:5006050 ! digit 3 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5106051 name: digit 4 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:5006051 ! digit 4 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5106052 name: digit 5 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton relationship: part_of UBERON:5006052 ! digit 5 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5111981 name: manual digit 6 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0016876 ! digit 6 digitopodial skeleton is_a: UBERON:5102389 ! manual digit digitopodial skeleton relationship: part_of UBERON:5011981 ! manual digit 6 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5111982 name: manual digit 7 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0016877 ! digit 7 digitopodial skeleton is_a: UBERON:5102389 ! manual digit digitopodial skeleton relationship: part_of UBERON:5011982 ! manual digit 7 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5111983 name: manual digit 8 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0016878 ! digit 8 digitopodial skeleton is_a: UBERON:5102389 ! manual digit digitopodial skeleton relationship: part_of UBERON:5011983 ! manual digit 8 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5111984 name: pedal digit 6 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton relationship: part_of UBERON:5011984 ! pedal digit 6 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5112137 name: pedal digit 7 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton relationship: part_of UBERON:5012137 ! pedal digit 7 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5112138 name: pedal digit 8 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:5101466 ! pedal digit digitopodial skeleton relationship: part_of UBERON:5012138 ! pedal digit 8 plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5112260 name: alular digit digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of alular digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "alular digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "alular digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5102389 ! manual digit digitopodial skeleton relationship: part_of UBERON:5012260 ! alular digit plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5112261 name: manual major digit (Aves) digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual major digit (Aves) plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual major digit (Aves)" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual major digit (Aves) skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5102389 ! manual digit digitopodial skeleton relationship: part_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:5112262 name: manual minor digit (Aves) digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual minor digit (Aves) plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] synonym: "manual minor digit (Aves)" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual minor digit (Aves) skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5102389 ! manual digit digitopodial skeleton relationship: part_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment property_value: curator_notes "this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials." xsd:string [Term] id: UBERON:6000000 name: obsolete embryonic germ layer derivative is_obsolete: true consider: FBbt:00000000 [Term] id: UBERON:6000002 name: arthropod tagma def: "One of the main divisions of the whole organism of arthropods formed from groups of segments." [doi:10.1016/B978-0-12-385026-3.00024-3] comment: Strictly speaking the term "tagma" cam be used for any metameric organism, however we follow the common usage which is to restrict the term to arthropods. xref: FBbt:00000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: never_in_taxon NCBITaxon:7742 [Term] id: UBERON:6000004 name: panarthropod head xref: FBbt:00000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000033 ! head [Term] id: UBERON:6000005 name: insect ocular segment def: "Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ." [FlyBase:FBrf0055841, FlyBase:FBrf0075072] synonym: "acron" RELATED [] xref: FBbt:00000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment relationship: never_in_taxon NCBITaxon:7742 [Term] id: UBERON:6000006 name: insect head segment def: "Any segment that is part of some insect head." [UBERON:cjm] xref: FBbt:00000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment relationship: never_in_taxon NCBITaxon:7742 relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:6000007 name: procephalic segment def: "A segment that is anterior to the gnathal segments." [FBC:gg] synonym: "cephalic segment" RELATED [] synonym: "pregnathal segment" EXACT [] synonym: "preoral segment" EXACT [] synonym: "procephalon" RELATED [] xref: FBbt:00000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment relationship: never_in_taxon NCBITaxon:7742 [Term] id: UBERON:6000008 name: labral segment def: "Procephalic segment anterior to the antennal segment. In the adult it bears the clypeo-labrum." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] synonym: "clypeo-labrum" RELATED [] xref: FBbt:00000008 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment [Term] id: UBERON:6000009 name: antennal segment def: "Segment anterior to the intercalary segment. In the adult it bears the antennae." [FBC:DOS] xref: FBbt:00000009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment [Term] id: UBERON:6000011 name: insect gnathal segment def: "The head segments that develop posterior to the embryonic/larval mouth." [FBC:gg] synonym: "postoral segment" RELATED [] xref: FBbt:00000011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment [Term] id: UBERON:6000014 name: insect labial segment def: "Most posterior of the gnathal segments. In the adult it bears a pair of fused appendages, the labia, and its ectodermal invaginations give rise to the salivary glands." [FlyBase:FBrf0007734] xref: FBbt:00000014 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment [Term] id: UBERON:6000015 name: insect thorax def: "The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs." [FlyBase:FBrf0166419] xref: FBbt:00000015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma [Term] id: UBERON:6000016 name: insect thoracic segment def: "Any segment (UBERON:6000003) that is part of some thorax (UBERON:6000015)." [FBC:auto_generated_definition] xref: FBbt:00000016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment relationship: part_of UBERON:6000015 ! insect thorax [Term] id: UBERON:6000017 name: insect prothoracic segment def: "The first (most anterior) segment of the thorax." [FBC:DOS] synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] xref: FBbt:00000017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment [Term] id: UBERON:6000018 name: insect mesothoracic segment def: "The second (middle) segment of the thorax." [FBC:DOS] synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] xref: FBbt:00000018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment [Term] id: UBERON:6000019 name: insect metathoracic segment def: "The third (most posterior) segment of the thorax." [FBC:DOS] synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] xref: FBbt:00000019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment [Term] id: UBERON:6000020 name: insect abdomen def: "The most posterior of the three tagma (UBERON:6000002)." [FlyBase:FBrf0166419] xref: FBbt:00000020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma [Term] id: UBERON:6000021 name: insect abdominal segment def: "Metameric subdivision of the abdomen." [FBC:SPR] xref: FBbt:00000021 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment relationship: part_of UBERON:6000020 ! insect abdomen [Term] id: UBERON:6000029 name: insect abdominal segment 8 synonym: "a8" RELATED [] xref: FBbt:00000029 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment [Term] id: UBERON:6000030 name: insect abdominal segment 9 synonym: "a9" RELATED [] xref: FBbt:00000030 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment [Term] id: UBERON:6000046 name: insect dorsal appendage def: "Paired appendage of the eggshell, located on the anterior-dorsal side of the egg, just posterior to the operculum. Functions as a respiratory structures." [FBC:DOS] synonym: "chorionic appendage" EXACT [FlyBase:FBrf0047871] xref: FBbt:00000046 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007248 ! insect chorionic specialization [Term] id: UBERON:6000094 name: obsolete clypeo-labral anlage in statu nascendi comment: No need for such a specific term in Uberon. See https://github.com/obophenotype/uberon/issues/2154. is_obsolete: true [Term] id: UBERON:6000096 name: insect ventral furrow xref: FBbt:00000096 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow [Term] id: UBERON:6000097 name: insect cephalic furrow xref: FBbt:00000097 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow relationship: part_of UBERON:0004734 ! gastrula [Term] id: UBERON:6000104 name: insect mesoderm anlage synonym: "ventral plate" RELATED [] xref: FBbt:00000104 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage [Term] id: UBERON:6000112 name: insect dorsal ectoderm synonym: "AdorEc" RELATED [] synonym: "dorEc" RELATED [] xref: FBbt:00000112 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: develops_from UBERON:6005427 ! insect ectoderm anlage relationship: part_of UBERON:6007045 ! insect trunk ectoderm [Term] id: UBERON:6000119 name: insect anterior ectoderm def: "The region of the ectoderm anterior to the cephalic furrow." [FBC:DOS] xref: FBbt:00000119 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:6000128 name: insect trunk mesoderm def: "The mesoderm of segments T1-A9. It first becomes morphologically distinct during ventral furrow formation. Following invagination during stages 6 and 7, it remains a coherent structure with no morphologically apparent subdivisions, apart from transient metamery during stage 9, until stage 11. It undergoes a number of morphological changes during this period: as its cells divide following invagination, it loses its epithelial integrity and by stage 9 has rearranged into a monolayer of cuboidal cells. A further division happens during stage 10 leading to two distinct layers by stage 11." [FlyBase:FBrf0089570] synonym: "AtrunkMes" RELATED [] synonym: "P2 TrMes" RELATED [FBC:DOS] synonym: "TrMes" RELATED [] xref: FBbt:00000128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000926 ! mesoderm relationship: develops_from UBERON:6000104 ! insect mesoderm anlage [Term] id: UBERON:6000130 name: insect visceral mesoderm xref: FBbt:00000130 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:6000128 ! insect trunk mesoderm [Term] id: UBERON:6000131 name: insect mesodermal crest is_a: UBERON:6026002 ! insect visceral mesoderm derivative relationship: part_of UBERON:6000130 ! insect visceral mesoderm [Term] id: UBERON:6000132 name: insect mesodermal crest of segment T3 is_a: UBERON:6026002 ! insect visceral mesoderm derivative relationship: part_of UBERON:6000131 ! insect mesodermal crest [Term] id: UBERON:6000137 name: embryonic tagma def: "Any tagma (UBERON:6000002) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] xref: FBbt:00000137 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:6000154 name: insect embryonic segment def: "Any insect segment that is part of some embryo." [UBERON:cjm] xref: FBbt:00000154 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:6000157 name: insect embryonic head segment def: "Any segment that is part of some insect embryonic head." [UBERON:cjm] xref: FBbt:00000157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment is_a: UBERON:6000154 ! insect embryonic segment relationship: part_of UBERON:0008816 ! embryonic head [Term] id: UBERON:6000158 name: insect embryonic procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some embryonic head (UBERON:6000155) in an insect." [FBC:auto_generated_definition] xref: FBbt:00000158 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6000157 ! insect embryonic head segment [Term] id: UBERON:6000160 name: insect embryonic antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] xref: FBbt:00000160 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6000158 ! insect embryonic procephalic segment [Term] id: UBERON:6000162 name: insect embryonic gnathal segment def: "Any gnathal segment (UBERON:6000011) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] xref: FBbt:00000162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment is_a: UBERON:6000157 ! insect embryonic head segment [Term] id: UBERON:6000165 name: insect embryonic labial segment def: "Any labial segment (UBERON:6000014) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] xref: FBbt:00000165 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000014 ! insect labial segment is_a: UBERON:6000162 ! insect embryonic gnathal segment [Term] id: UBERON:6000166 name: insect embryonic thorax def: "Any thorax (UBERON:6000015) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] xref: FBbt:00000166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6000137 ! embryonic tagma [Term] id: UBERON:6000167 name: insect embryonic thoracic segment def: "Any segment (UBERON:6000003) that is part of some embryonic thorax (UBERON:6000166)." [FBC:auto_generated_definition] xref: FBbt:00000167 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6000154 ! insect embryonic segment relationship: part_of UBERON:6000166 ! insect embryonic thorax [Term] id: UBERON:6000168 name: insect embryonic prothoracic segment def: "Prothoracic segment of the embryo." [FBC:DOS] synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] xref: FBbt:00000168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment [Term] id: UBERON:6000169 name: insect embryonic mesothoracic segment def: "Mesothoracic segment of the embryo." [FBC:DOS] synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] xref: FBbt:00000169 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment [Term] id: UBERON:6000170 name: insect embryonic metathoracic segment def: "Metathoracic segment of the embryo." [FBC:DOS] synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] xref: FBbt:00000170 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000019 ! insect metathoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment [Term] id: UBERON:6000171 name: insect embryonic abdomen def: "Abdomen of the embryo." [FBC:DOS] xref: FBbt:00000171 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6000137 ! embryonic tagma [Term] id: UBERON:6000172 name: insect embryonic abdominal segment def: "Metameric subdivision of the embryonic abdomen." [FBC:SPR] xref: FBbt:00000172 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6000154 ! insect embryonic segment relationship: part_of UBERON:6000171 ! insect embryonic abdomen [Term] id: UBERON:6000180 name: insect embryonic abdominal segment 8 def: "Any abdominal segment 8 (UBERON:6000029) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] synonym: "a8" RELATED [] xref: FBbt:00000180 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000029 ! insect abdominal segment 8 is_a: UBERON:6000172 ! insect embryonic abdominal segment [Term] id: UBERON:6000181 name: insect embryonic abdominal segment 9 def: "Any abdominal segment 9 (UBERON:6000030) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] synonym: "a9" RELATED [] xref: FBbt:00000181 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000030 ! insect abdominal segment 9 is_a: UBERON:6000172 ! insect embryonic abdominal segment [Term] id: UBERON:6000186 name: insect embryonic optic lobe primordium def: "Primordium of the insect embryo that gives rises to the embryonic/larval optic anlage." [ISBN:9783540570790] synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] xref: FBbt:00000186 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 [Term] id: UBERON:60005380 name: obsolete insect pharynx comment: Obsoleted because the ID was minted incorrectly. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/3051" xsd:anyURI is_obsolete: true replaced_by: UBERON:6005380 [Term] id: UBERON:6001055 name: insect presumptive embryonic/larval nervous system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval nervous system." [FlyBase:FBrf0031012] synonym: "embryonic nervous system" RELATED [FBC:DOS] xref: FBbt:00001055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system [Term] id: UBERON:6001056 name: insect presumptive embryonic/larval central nervous system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval central nervous system." [FlyBase:FBrf0031012] synonym: "embryonic central nervous system" RELATED [FBC:DOS] xref: FBbt:00001056 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system relationship: part_of UBERON:6001055 ! insect presumptive embryonic/larval nervous system [Term] id: UBERON:6001057 name: insect neurogenic region is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:6001059 name: insect visual primordium synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] synonym: "P2 VisSys" RELATED [FBC:DOS] xref: FBbt:00001059 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative [Term] id: UBERON:6001060 name: insect embryonic brain def: "Brain of the embryo." [FBC:SPR] xref: FBbt:00001060 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain relationship: part_of UBERON:6001056 ! insect presumptive embryonic/larval central nervous system [Term] id: UBERON:6001135 name: insect proneural cluster def: "An equivalence group of the neurectoderm where all cells can, although only one will, become a neural progenitor cell." [FlyBase:FBrf0074477, FlyBase:FBrf0089570] xref: FBbt:00001135 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage [Term] id: UBERON:6001648 name: insect embryonic imaginal precursor def: "Embryonic structure that will proliferate during larval development into a larval imaginal disc. During early embryogenesis the precursor is part of the epithelial sheet before segregating from the epithelial sheet by late embryogenesis (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] xref: FBbt:00001648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6005023 ! insect imaginal precursor [Term] id: UBERON:6001649 name: insect imaginal disc primordium def: "Population of contiguous, morphologically distinct cells that will form an imaginal disc." [FBC:SPR] synonym: "imaginal disc specific anlage" RELATED [] xref: FBbt:00001649 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:6001648 ! insect embryonic imaginal precursor relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium [Term] id: UBERON:6001650 name: insect labial disc primordium def: "Primordium that will form the labial disc." [FBC:SPR] synonym: "labial disc specific anlage" RELATED [] xref: FBbt:00001650 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: part_of UBERON:6000165 ! insect embryonic labial segment [Term] id: UBERON:6001652 name: insect eye-antennal disc primordium def: "Primordium from which the eye-antennal disc develops." [FBC:SPR] synonym: "eye-antennal disc specific anlage" RELATED [] xref: FBbt:00001652 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: part_of UBERON:6000160 ! insect embryonic antennal segment [Term] id: UBERON:6001653 name: insect dorsal thoracic disc primordium synonym: "dorsal thoracic disc specific anlage" RELATED [] xref: FBbt:00001653 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment [Term] id: UBERON:6001655 name: insect dorsal mesothoracic disc primordium synonym: "dorsal mesothoracic disc specific anlage" RELATED [] xref: FBbt:00001655 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium relationship: part_of UBERON:6000169 ! insect embryonic mesothoracic segment [Term] id: UBERON:6001656 name: insect dorsal metathoracic disc primordium synonym: "dorsal metathoracic disc specific anlage" RELATED [] xref: FBbt:00001656 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium relationship: part_of UBERON:6000170 ! insect embryonic metathoracic segment [Term] id: UBERON:6001657 name: insect ventral thoracic disc primordium synonym: "ventral thoracic disc specific anlage" RELATED [] xref: FBbt:00001657 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment [Term] id: UBERON:6001658 name: insect ventral prothoracic disc primordium synonym: "ventral prothoracic disc specific anlage" RELATED [] xref: FBbt:00001658 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001657 ! insect ventral thoracic disc primordium relationship: part_of UBERON:6000168 ! insect embryonic prothoracic segment [Term] id: UBERON:6001661 name: insect genital disc primordium def: "Primordium from which the genital disc develops." [FBC:SPR] synonym: "genital disc specific anlage" RELATED [] xref: FBbt:00001661 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium [Term] id: UBERON:6001662 name: insect male genital disc primordium def: "Primordium from which the male genital disc derives." [FBC:SPR] synonym: "male genital disc specific anlage" RELATED [] xref: FBbt:00001662 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001661 ! insect genital disc primordium relationship: part_of UBERON:6000181 ! insect embryonic abdominal segment 9 [Term] id: UBERON:6001663 name: insect female genital disc primordium def: "Primordium from which the female genital disc derives." [FBC:SPR] synonym: "female genital disc specific anlage" RELATED [] xref: FBbt:00001663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001661 ! insect genital disc primordium relationship: part_of UBERON:6000180 ! insect embryonic abdominal segment 8 [Term] id: UBERON:6001664 name: insect embryonic/larval circulatory system def: "Tubular system of the embryo/larva through which hemolymph flows." [FlyBase:FBrf0031012] synonym: "larval circulatory system" EXACT [] xref: FBbt:00001664 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001009 ! circulatory system relationship: part_of UBERON:0000323 ! late embryo relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6001668 name: insect embryonic/larval lymph gland def: "Hematopoietic organ of the larva, located along the dorsal vessel, behind the brain. It produces the plasmatocytes, crystal cells and lamellocytes which are released at the end of the larval instar and onset of metamorphosis. It is composed of 3 pairs of bilateral lobes: an anterior primary lobe, a posterior secondary lobe and the most posterior lobe (or multiple lobes), the tertiary lobe. Each lobe is separated by pericardial cells. In the late embryo, the lymph gland consists of a single pair of lobes (primary lobes) containing around 20 cells each that flank the dorsal vessel. By the second larval instar, the lymph gland is composed of two or three new pairs of posterior lobes, and the primary lobes have increased in size to contain around 200 cells. During the first and early second larval instars, the lymph gland comprises only the hematopoietic progenitor population. The lymph gland increases in size ten-fold by the late third instar, and at this stage the progenitor cells (prohemocytes) become restricted to the medial region (medullary zone) of the primary lobe and become quiescent. The differentiated hemocytes are found in the periphery (cortical zone) of the primary lobe and these cells proliferate extensively. The posterior signalling center is a group of about 30 cells at the posterior tip of the primary lobe that secretes several signalling molecules and functions as a stem-cell niche. The secondary and tertiary lobes contain prohemocytes, and rarely a differentiated cell. Lymph glands are eliminated at metamorphosis." [FlyBase:FBrf0031001, FlyBase:FBrf0032406, FlyBase:FBrf0074444, FlyBase:FBrf0155787, FlyBase:FBrf0162082, FlyBase:FBrf0187467] synonym: "embryonic/larval hematopoietic organ" EXACT [FlyBase:FBrf0074444] synonym: "hematopoietic organ" EXACT [] xref: FBbt:00001668 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:6000132 ! insect mesodermal crest of segment T3 relationship: develops_from UBERON:6005467 ! insect lymph gland primordium relationship: part_of UBERON:6001664 ! insect embryonic/larval circulatory system [Term] id: UBERON:6001722 name: insect ring gland def: "A closely associated cluster of three neuroendocrine glands located anterior to the aorta and dorsal to the esophagus. At embryonic stage 17 and in larva it is found anterior to the brain and is formed by the corpus cardiacum ventrally, the prothoracic gland laterally and the corpus allatum dorsally. The adult ring gland is located anterior to the proventriculus and is formed by the corpus cardiacum ventrally, the corpus allatum dorsally and the hypocerebral ganglion posterior to the corpus cardiacum. It is innervated by neurons of the nervus corporis cardiaci (NccI-III)." [FlyBase:FBrf0064803, FlyBase:FBrf0089570, FlyBase:FBrf0179777, PMID:12966498] xref: FBbt:00001722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:6001728 name: insect larval tagma def: "Any tagma (UBERON:6000002) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] xref: FBbt:00001728 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6001729 name: insect larval segment def: "Any segment that is part of some larva." [FBC:auto_generated_definition] xref: FBbt:00001729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment relationship: develops_from UBERON:6000154 ! insect embryonic segment relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6001730 name: insect larval head def: "Any head that is part of some larva." [FBC:auto_generated_definition] xref: FBbt:00001730 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000033 ! head relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6001731 name: insect larval ocular segment def: "Any ocular segment (UBERON:6000005) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval acron" RELATED [] xref: FBbt:00001731 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000005 ! insect ocular segment is_a: UBERON:6001733 ! insect larval procephalic segment [Term] id: UBERON:6001732 name: insect larval head segment def: "Any segment that is part of some larval head." [FBC:auto_generated_definition] xref: FBbt:00001732 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment is_a: UBERON:6001729 ! insect larval segment relationship: part_of UBERON:6001730 ! insect larval head [Term] id: UBERON:6001733 name: insect larval procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] xref: FBbt:00001733 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6001732 ! insect larval head segment [Term] id: UBERON:6001734 name: insect larval labral segment def: "Any labral segment (UBERON:6000008) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] xref: FBbt:00001734 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000008 ! labral segment is_a: UBERON:6001733 ! insect larval procephalic segment [Term] id: UBERON:6001735 name: insect larval antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] xref: FBbt:00001735 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6001733 ! insect larval procephalic segment [Term] id: UBERON:6001737 name: insect larval gnathal segment def: "Any gnathal segment (UBERON:6000011) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] xref: FBbt:00001737 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment is_a: UBERON:6001732 ! insect larval head segment [Term] id: UBERON:6001740 name: insect larval labial segment def: "Any labial segment (UBERON:6000014) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] xref: FBbt:00001740 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000014 ! insect labial segment is_a: UBERON:6001737 ! insect larval gnathal segment [Term] id: UBERON:6001741 name: insect larval thorax def: "Any thorax (UBERON:6000015) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] xref: FBbt:00001741 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6001728 ! insect larval tagma [Term] id: UBERON:6001742 name: insect larval thoracic segment def: "Any segment (UBERON:6000003) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] xref: FBbt:00001742 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6001729 ! insect larval segment relationship: part_of UBERON:6001741 ! insect larval thorax [Term] id: UBERON:6001743 name: insect larval prothoracic segment def: "Any prothoracic segment (UBERON:6000017) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] xref: FBbt:00001743 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment [Term] id: UBERON:6001744 name: insect larval mesothoracic segment def: "Any mesothoracic segment (UBERON:6000018) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] xref: FBbt:00001744 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment [Term] id: UBERON:6001745 name: insect larval metathoracic segment def: "Any metathoracic segment (UBERON:6000019) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] xref: FBbt:00001745 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000019 ! insect metathoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment [Term] id: UBERON:6001746 name: insect larval abdomen def: "Any abdomen (UBERON:6000020) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] xref: FBbt:00001746 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6001728 ! insect larval tagma [Term] id: UBERON:6001747 name: insect larval abdominal segment def: "Any segment (UBERON:6000003) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] xref: FBbt:00001747 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6001729 ! insect larval segment relationship: part_of UBERON:6001746 ! insect larval abdomen [Term] id: UBERON:6001755 name: insect larval abdominal segment 8 def: "Any abdominal segment 8 (UBERON:6000029) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] synonym: "a8" RELATED [] xref: FBbt:00001755 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000029 ! insect abdominal segment 8 is_a: UBERON:6001747 ! insect larval abdominal segment [Term] id: UBERON:6001756 name: insect larval abdominal segment 9 def: "Any abdominal segment 9 (UBERON:6000030) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] synonym: "a9" RELATED [] xref: FBbt:00001756 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000030 ! insect abdominal segment 9 is_a: UBERON:6001747 ! insect larval abdominal segment [Term] id: UBERON:6001760 name: insect embryonic/larval imaginal precursor def: "Imaginal precursor that is part of the embryo/larva." [FBC:SPR] synonym: "larval imaginal precursor" EXACT [] xref: FBbt:00001760 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005023 ! insect imaginal precursor relationship: part_of UBERON:0002548 ! larva relationship: part_of UBERON:0003142 ! prepupa relationship: part_of UBERON:0003143 ! pupa [Term] id: UBERON:6001764 name: insect labial disc def: "Imaginal disc that, in the adult, gives rise to the proboscis, including the prementum, prestomal cavity, labellum, labellar cap and pseudotrachea (Cohen, 1993)." [FlyBase:FBrf0033866, FlyBase:FBrf0064789] xref: FBbt:00001764 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001650 ! insect labial disc primordium relationship: part_of UBERON:6001740 ! insect larval labial segment [Term] id: UBERON:6001765 name: insect clypeo-labral disc def: "Imaginal disc that in the adults gives rise to the labrum, anterior and posterior cibarial plates, fish trap bristles, epipharyngeal sclerite and clypeus (Cohen, 1993)." [FlyBase:FBrf0064789] synonym: "clypeolabral disc" EXACT [] xref: FBbt:00001765 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6005514 ! insect adult clypeo-labral primordium relationship: part_of UBERON:6001734 ! insect larval labral segment [Term] id: UBERON:6001766 name: insect eye-antennal disc def: "Imaginal disc that, in the adults, gives rise to the eye, antenna, head capsule (including all bristles and external membranes) and the maxillary palps (Cohen, 1993)." [FlyBase:FBrf0064789] xref: FBbt:00001766 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001652 ! insect eye-antennal disc primordium [Term] id: UBERON:6001767 name: insect antennal disc def: "Posterior portion of the eye-antennal disc. It gives rise to the adult antennal segments and the maxillary palp, as well as contributing to the head capsule." [FlyBase:FBrf0064789] xref: FBbt:00001767 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc relationship: part_of UBERON:6001735 ! insect larval antennal segment relationship: part_of UBERON:6001766 ! insect eye-antennal disc [Term] id: UBERON:6001776 name: insect dorsal thoracic disc def: "Imaginal disc that is a precursor of dorsal thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] synonym: "dorsal thoracic disk" EXACT [] xref: FBbt:00001776 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001653 ! insect dorsal thoracic disc primordium relationship: part_of UBERON:6001742 ! insect larval thoracic segment [Term] id: UBERON:6001778 name: insect wing disc def: "Dorsal imaginal disc of the mesothorax. Precursor of dorsal mesothoracic structures of the adult including the postnotum, scutum, scutellum, wing, wing hinge and part of the notal pleura." [FlyBase:FBrf0064789] synonym: "dorsal mesothoracic disc" EXACT [] xref: FBbt:00001778 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001776 ! insect dorsal thoracic disc relationship: develops_from UBERON:6001655 ! insect dorsal mesothoracic disc primordium relationship: part_of UBERON:6001744 ! insect larval mesothoracic segment [Term] id: UBERON:6001779 name: insect haltere disc def: "Dorsal imaginal disc of the metathorax. Precursor of structure of the adult dorsal metathorax including the haltere." [FlyBase:FBrf0064789] synonym: "dorsal metathoracic disc" EXACT [] xref: FBbt:00001779 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001776 ! insect dorsal thoracic disc relationship: develops_from UBERON:6001656 ! insect dorsal metathoracic disc primordium relationship: part_of UBERON:6001745 ! insect larval metathoracic segment [Term] id: UBERON:6001780 name: insect ventral thoracic disc def: "Imaginal disc that is a precursor of ventral thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] synonym: "leg disc" RELATED [] synonym: "ventral thoracic disk" EXACT [] xref: FBbt:00001780 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001657 ! insect ventral thoracic disc primordium relationship: part_of UBERON:6001742 ! insect larval thoracic segment [Term] id: UBERON:6001781 name: insect prothoracic leg disc def: "Imaginal disc of the ventral prothoracic segment. Precursor of structures of the adult ventral prothorax including the prothoracic (1st) leg." [FlyBase:FBrf0064789] synonym: "1st leg disc" EXACT [] synonym: "T1 leg disc" EXACT [] synonym: "ventral prothoracic disc" EXACT [] xref: FBbt:00001781 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001780 ! insect ventral thoracic disc relationship: develops_from UBERON:6001658 ! insect ventral prothoracic disc primordium relationship: part_of UBERON:6001743 ! insect larval prothoracic segment [Term] id: UBERON:6001784 name: insect genital disc def: "Imaginal disc that gives rise to the internal and external genitalia, analia and adult hind gut (Cohen, 1993)." [FlyBase:FBrf0064789] xref: FBbt:00001784 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001661 ! insect genital disc primordium [Term] id: UBERON:6001785 name: insect male genital disc def: "Genital disc that gives rise to the penis and external genitalia, sperm pump, ejaculatory duct, paragonia and vas deferens, anal plates and adult hindgut (Cohen, 1993)." [FlyBase:FBrf0064789] xref: FBbt:00001785 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001784 ! insect genital disc relationship: develops_from UBERON:6001662 ! insect male genital disc primordium relationship: part_of UBERON:6001747 ! insect larval abdominal segment [Term] id: UBERON:6001787 name: insect female genital disc def: "Genital disc that gives rise to the vagina and vaginal plates, uterus, parovaria, spermatheca, seminal recepticle, oviducts, female analia and hindgut. (Cohen, 1993)." [FlyBase:FBrf0064789] xref: FBbt:00001787 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001784 ! insect genital disc relationship: develops_from UBERON:6001663 ! insect female genital disc primordium relationship: part_of UBERON:6001747 ! insect larval abdominal segment [Term] id: UBERON:6001789 name: obsolete insect histoblast comment: Obsoleted as this represents a cell type and therefore belongs to CL. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2867" xsd:anyURI is_obsolete: true replaced_by: CL:0000373 [Term] id: UBERON:6001790 name: insect histoblast nest def: "One of several groups of cells in the larval abdomen that gives rise to the adult external abdomen." [FBC:gg] xref: FBbt:00001790 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001760 ! insect embryonic/larval imaginal precursor relationship: part_of UBERON:6001747 ! insect larval abdominal segment [Term] id: UBERON:6001791 name: obsolete insect dorsal histoblast nest abdominal comment: Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2867" xsd:anyURI is_obsolete: true consider: UBERON:6001790 [Term] id: UBERON:6001792 name: obsolete insect anterior dorsal histoblast nest abdominal comment: Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2867" xsd:anyURI is_obsolete: true consider: UBERON:6001790 [Term] id: UBERON:6001809 name: obsolete insect posterior dorsal histoblast nest abdominal comment: Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2867" xsd:anyURI is_obsolete: true consider: UBERON:6001790 [Term] id: UBERON:6001842 name: insect embryonic/larval digestive system def: "Digestive system of the insect embryo or larva." [ISBN:9780879698287, ISBN:9780879698997] synonym: "larval digestive system" EXACT [] xref: FBbt:00001842 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001007 ! digestive system relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6001845 name: insect cephalopharyngeal skeleton def: "A group of connected sclerites of the anterior embryonic/larval digestive system (atrium, pharynx and dorsal pouch). The cibarial dilator muscles connect to the cephalopharyngeal skeleton to lift the roof of the pharynx and thereby widen its lumen (Jurgens, 1986)." [FlyBase:FBrf0007734, FlyBase:FBrf0045366] synonym: "cephalo-pharyngeal skeleton" EXACT [FlyBase:FBrf0045366] synonym: "larval head skeleton" EXACT [FlyBase:FBrf0205317] synonym: "mouth parts" EXACT [] xref: FBbt:00001845 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization relationship: part_of UBERON:0008816 ! embryonic head relationship: part_of UBERON:6001730 ! insect larval head relationship: part_of UBERON:6001842 ! insect embryonic/larval digestive system [Term] id: UBERON:6001848 name: insect epipharyngeal sclerite def: "Unpaired sclerite to which the median tooth (labrum) posteriorly merges, and bears the cuticular pores of the labral sense organ." [FlyBase:FBrf0045366] synonym: "epistomal sclerite" EXACT [FlyBase:FBrf0045366] xref: FBbt:00001848 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization relationship: part_of UBERON:6001845 ! insect cephalopharyngeal skeleton [Term] id: UBERON:6001911 name: insect embryonic/larval nervous system def: "Nervous system of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0075072, FlyBase:FBrf0105282] synonym: "larval nervous system" EXACT [] xref: FBbt:00001911 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system relationship: part_of UBERON:0000323 ! late embryo relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6001919 name: insect embryonic/larval central nervous system def: "Central nervous system of the embryo/larva." [FBC:SPR] synonym: "larval central nervous system" EXACT [] xref: FBbt:00001919 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6001911 ! insect embryonic/larval nervous system [Term] id: UBERON:6001920 name: insect embryonic/larval brain def: "Brain of the embryo/larva." [FBC:SPR] synonym: "larval brain" NARROW [] synonym: "larval supraesophageal ganglion" NARROW [] xref: FBbt:00001920 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain is_a: UBERON:0003339 ! ganglion of central nervous system relationship: develops_from UBERON:6001060 ! insect embryonic brain relationship: part_of UBERON:6001730 ! insect larval head relationship: part_of UBERON:6001919 ! insect embryonic/larval central nervous system [Term] id: UBERON:6001925 name: insect embryonic/larval protocerebrum def: "Protocerebrum of the embryo/larva." [FBC:SPR] synonym: "larval protocerebrum" RELATED [] xref: FBbt:00001925 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6001734 ! insect larval labral segment relationship: part_of UBERON:6001920 ! insect embryonic/larval brain [Term] id: UBERON:6002639 name: insect larval sense organ def: "Any sense organ that is part of some larva." [FBC:auto_generated_definition] synonym: "larval sense organ" EXACT [] xref: FBbt:00002639 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6002642 name: insect embryonic/larval ocular segment sensillum def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition] synonym: "larval ocular segment sensillum" EXACT [] xref: FBbt:00002642 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007280 ! insect embryonic/larval head sense organ relationship: part_of UBERON:6001731 ! insect larval ocular segment [Term] id: UBERON:6003005 name: insect adult tagma def: "Any tagma (UBERON:6000002) that is part of some adult (UBERON:6003004)." [FBC:auto_generated_definition] xref: FBbt:00003005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6003006 name: insect adult segment xref: FBbt:00003006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6003007 name: insect adult head def: "Head of the adult organism." [FBC:SPR] xref: FBbt:00003007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000004 ! panarthropod head is_a: UBERON:6003005 ! insect adult tagma [Term] id: UBERON:6003009 name: insect adult head segment def: "Segment of the adult head." [FlyBase:FBrf0064788] xref: FBbt:00003009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment is_a: UBERON:6003006 ! insect adult segment relationship: part_of UBERON:6003007 ! insect adult head [Term] id: UBERON:6003010 name: insect adult procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] xref: FBbt:00003010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6003009 ! insect adult head segment [Term] id: UBERON:6003011 name: insect adult labral segment def: "Any labral segment (UBERON:6000008) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] xref: FBbt:00003011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000008 ! labral segment is_a: UBERON:6003010 ! insect adult procephalic segment [Term] id: UBERON:6003012 name: insect adult antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] synonym: "adult antennal structure" EXACT [] xref: FBbt:00003012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6003010 ! insect adult procephalic segment [Term] id: UBERON:6003018 name: insect adult thorax def: "Thorax of the adult." [FlyBase:FBim0000792] xref: FBbt:00003018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6003005 ! insect adult tagma [Term] id: UBERON:6003019 name: insect adult thoracic segment def: "Any segment (UBERON:6000003) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] xref: FBbt:00003019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6003006 ! insect adult segment relationship: part_of UBERON:6003018 ! insect adult thorax [Term] id: UBERON:6003020 name: insect adult prothoracic segment def: "Any prothoracic segment (UBERON:6000017) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] synonym: "prothorax" EXACT [] synonym: "t1" EXACT [] synonym: "thoracic segment 1" EXACT [] xref: FBbt:00003020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6003019 ! insect adult thoracic segment [Term] id: UBERON:6003021 name: insect adult mesothoracic segment def: "Any mesothoracic segment (UBERON:6000018) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] synonym: "mesothorax" EXACT [] synonym: "t2" EXACT [] synonym: "thoracic segment 2" EXACT [] xref: FBbt:00003021 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6003019 ! insect adult thoracic segment [Term] id: UBERON:6003023 name: insect adult abdomen def: "Abdomen of the adult." [FlyBase:FBim0000809, FlyBase:FBim0000810] xref: FBbt:00003023 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6003005 ! insect adult tagma [Term] id: UBERON:6003024 name: insect adult abdominal segment def: "Any abdominal segment (UBERON:6000021) that is part of some adult abdomen (UBERON:6003023)." [FBC:auto_generated_definition] xref: FBbt:00003024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6003006 ! insect adult segment relationship: part_of UBERON:6003023 ! insect adult abdomen [Term] id: UBERON:6003039 name: dorsal trunk of insect trachea def: "Longitudinal tracheal branch of the insect tracheal system, dorsal to the lateral trunk." [FBbt:00005043] synonym: "dorsal trunk" BROAD SENSU [NCBITaxon:50557] xref: FBbt:00003039 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005043 ! insect trachea [Term] id: UBERON:6003218 name: insect adult muscle system def: "Muscle system of the adult." [FlyBase:FBrf0007735] is_a: UBERON:0000383 ! musculature of body relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6003259 name: insect adult somatic muscle def: "Muscle attached to the inner surface of the adult body wall, extending between articulated or flexibly joined areas, that serves to move the parts of the exoskeleton." [FlyBase:FBrf0007735] xref: FBbt:00003259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005090 ! muscle structure relationship: part_of UBERON:6003218 ! insect adult muscle system [Term] id: UBERON:6003559 name: insect adult nervous system def: "Nervous system of the adult insect." [ISBN:978-087969828-7] xref: FBbt:00003559 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6003623 name: insect adult central nervous system def: "Central nervous system of the adult." [FBC:SPR] xref: FBbt:00003623 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6003559 ! insect adult nervous system [Term] id: UBERON:6003624 name: insect adult brain def: "Brain of the adult." [FBC:SPR] xref: FBbt:00003624 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain relationship: part_of UBERON:6003007 ! insect adult head relationship: part_of UBERON:6003623 ! insect adult central nervous system [Term] id: UBERON:6003626 name: insect supraesophageal ganglion def: "The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "SPG" RELATED [] xref: FBbt:00003626 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0003339 ! ganglion of central nervous system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:6003627 name: insect protocerebrum def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "protocerebral neuromere" EXACT [FlyBase:FBrf0092819] xref: FBbt:00003627 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:6000008 ! labral segment relationship: part_of UBERON:6003626 ! insect supraesophageal ganglion [Term] id: UBERON:6003632 name: insect adult central complex def: "A midline crossing complex of 4 synaptic neuropil domains of the adult brain: the ellipsoid body, the fan-shaped body, the paired noduli, and the protocerebral bridge. It is closely associated with another paired synaptic neuropil domain, the lateral complex. It lies in the middle of the brain between the pedunculi of the mushroom bodies and is bounded ventrally by the esophagus, dorsally by the pars intercerebralis and laterally by the antenno-glomerular tracts." [FlyBase:FBrf0049409, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "adult central body complex" EXACT [] synonym: "central body" RELATED [] synonym: "central body complex" RELATED [] synonym: "CX" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] xref: FBbt:00003632 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6041000 ! insect synaptic neuropil block relationship: develops_from UBERON:6007070 ! insect centro-posterior medial synaptic neuropil domain relationship: part_of UBERON:6007145 ! insect adult protocerebrum [Term] id: UBERON:6004203 name: obsolete insect adult clypeo-labral anlage comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI is_obsolete: true consider: UBERON:6005514 [Term] id: UBERON:6004296 name: insect sex comb def: "A row of darkly pigmented, male specific chaetae located on the prothoracic metatarsal segment of the prothoracic leg. The number of chaetae (teeth) per sex comb varies between individuals, e.g.- Hannah-Alava and Stern report 10-13." [FlyBase:FBrf0011482, FlyBase:FBrf0012178] synonym: "ctenidium" EXACT [FlyBase:FBrf0012178] synonym: "metatarsal comb" EXACT [] xref: FBbt:00004296 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6100153 ! insect sensilla row relationship: part_of UBERON:6007020 ! insect metatarsus of male prothoracic leg [Term] id: UBERON:6004340 name: insect wing hair def: "The posteriorly oriented trichome of a cell of the wing blade. Each cell makes one of these trichomes at its posterior vertex." [FBC:DOS] synonym: "wing trichome" RELATED [] xref: FBbt:00004340 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004979 ! insect trichome relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: UBERON:6004475 name: insect sclerite def: "A region of integument whose external cuticular part is a hard, sclerotized plate." [FBC:gg] synonym: "integumentary plate" EXACT [] synonym: "plate" RELATED [] xref: FBbt:00004475 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6004476 name: insect tergite def: "The dorsal plate (sclerite) of an adult abdominal segment." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "abdominal tergite" EXACT [] xref: FBbt:00004476 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004475 ! insect sclerite relationship: develops_from UBERON:6001790 ! insect histoblast nest relationship: part_of UBERON:6003024 ! insect adult abdominal segment relationship: part_of UBERON:6004788 ! insect adult external abdomen [Term] id: UBERON:6004477 name: insect sternite def: "An adult ventral sclerite." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "abdominal sternite" EXACT [] xref: FBbt:00004477 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004475 ! insect sclerite [Term] id: UBERON:6004481 name: insect adult external head xref: FBbt:00004481 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003007 ! insect adult head relationship: part_of UBERON:6005396 ! insect adult integumentary system [Term] id: UBERON:6004519 name: insect arista def: "Highly specialised, slender sixth segment of the antenna covered in bristle-like outgrowths known as laterals. It extends laterally from the dorsal region of the third segment of the antenna." [FlyBase:FBrf0007734, FlyBase:FBrf0031004, FlyBase:FBrf0137012] synonym: "segment 6" EXACT [] xref: FBbt:00004519 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007149 ! segment of antenna relationship: develops_from UBERON:6110811 ! insect presumptive arista [Term] id: UBERON:6004520 name: insect mouthpart xref: FBbt:00004520 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:6004481 ! insect adult external head [Term] id: UBERON:6004521 name: insect clypeus def: "The anterior part of the head between the frons and the labrum, which occasionally may fuse with either one to form the frontoclypeus and the clypeolabrum. In the context of Drosophila refers to a round structure on the center of the frontal adult external head." [FBC:gg, FlyBase:FBrf0166419] xref: FBbt:00004521 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004475 ! insect sclerite relationship: develops_from UBERON:6001765 ! insect clypeo-labral disc relationship: part_of UBERON:6004540 ! insect basiproboscis [Term] id: UBERON:6004535 name: insect proboscis def: "The trunk-like extension of adult head, forming a protrusible sucking proboscis for the ingestion of liquid food (pg 425 Miller et al., 1950; pg 383, Ferris et al., 1950)." [FlyBase:FBrf0007734, FlyBase:FBrf0007735] xref: FBbt:00004535 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001764 ! insect labial disc relationship: part_of UBERON:6004520 ! insect mouthpart [Term] id: UBERON:6004540 name: insect basiproboscis xref: FBbt:00004540 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:6004520 ! insect mouthpart [Term] id: UBERON:6004551 name: insect adult external thorax def: "External structures that make up the adult insect thorax." [ISBN:9780879698287] xref: FBbt:00004551 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003018 ! insect adult thorax relationship: part_of UBERON:6005396 ! insect adult integumentary system [Term] id: UBERON:6004552 name: insect tergum def: "The upper, originally unpaired plate of the segmented insect body, which either independently or fused with a ventral plate covers the body dorsally, specifically that of the thorax." [FlyBase:FBrf0166419] xref: FBbt:00004552 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:6004551 ! insect adult external thorax [Term] id: UBERON:6004578 name: insect adult external mesothorax xref: FBbt:00004578 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007285 ! insect segmental subdivision of integument relationship: part_of UBERON:6003021 ! insect adult mesothoracic segment relationship: part_of UBERON:6004551 ! insect adult external thorax [Term] id: UBERON:6004579 name: insect dorsal mesothorax is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6007284 ! insect region of integument relationship: develops_from UBERON:6001778 ! insect wing disc relationship: part_of UBERON:6004578 ! insect adult external mesothorax [Term] id: UBERON:6004580 name: insect mesothoracic tergum def: "The dorsal sclerites (tergites) of the mesothorax." [FBC:DOS] synonym: "alinotum" EXACT [FlyBase:FBrf0111704] synonym: "mesonotum" EXACT [FlyBase:FBrf0166419] synonym: "notum" BROAD [] xref: FBbt:00004580 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004552 ! insect tergum relationship: develops_from UBERON:6006032 ! insect mesothoracic tergum primordium relationship: part_of UBERON:6004579 ! insect dorsal mesothorax [Term] id: UBERON:6004646 name: insect tarsal segment def: "A segment of the tarsus of the adult leg. The first tarsal segment, the metatarsus, is proximally connected to the tibia. Tarsal segments are covered in 8 longitudinal rows of bristles, with row 1 being the most ventral." [FlyBase:FBim0000836.html, FlyBase:FBrf0007734, FlyBase:FBrf0012178] synonym: "tarsomere" EXACT [FlyBase:FBrf0111704] xref: FBbt:00004646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007150 ! insect segment of leg [Term] id: UBERON:6004648 name: insect metatarsus def: "The first of the tarsal segments of the adult leg. It is located between the tibia and the second tarsal segment and is longer than the other tarsal segments. It has 8 longitudinal rows of bristles around the circumference." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0012178, FlyBase:FBrf0111704] synonym: "1st tarsal segment" EXACT [] synonym: "basitarsus" EXACT [FlyBase:FBrf0111704] synonym: "first segment of the tarsus" EXACT [] synonym: "first tarsal segment" EXACT [] synonym: "tarsal segment 1" EXACT [] xref: FBbt:00004648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004646 ! insect tarsal segment [Term] id: UBERON:6004663 name: insect prothoracic leg def: "Leg of the insect prothoracic segment." [doi:10.1017/CBO9780511818202.009] synonym: "insect first leg" EXACT [] synonym: "insect foreleg" EXACT [] synonym: "insect T1 leg" EXACT [] xref: FBbt:00004663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005895 ! insect leg relationship: part_of UBERON:6000017 ! insect prothoracic segment [Term] id: UBERON:6004668 name: insect prothoracic tarsal segment def: "Tarsal segment of the adult prothoracic leg." [FBC:MMC] xref: FBbt:00004668 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004646 ! insect tarsal segment relationship: part_of UBERON:6004663 ! insect prothoracic leg [Term] id: UBERON:6004670 name: insect prothoracic metatarsus def: "First tarsal segment of the prothoracic leg. Proximally, it articulates with the tibia and distally with the second tarsal segment. Its surface is covered with eight longitudinal rows of bristles and with transverse rows of bristles (TR) in the anterior compartment, between proximo-distal rows 7 and 8. There is sexual dimorphism in the number of TRs (transverse row bristles, TR). In males, 2 TRs are replaced by the sex comb and one central bristle." [FlyBase:FBrf0031004, FlyBase:FBrf0219028] synonym: "prothoracic basitarsus" EXACT [FlyBase:FBrf0111704] synonym: "prothoracic tarsal segment 1" EXACT [] synonym: "T1 tarsal segment 1" EXACT [] synonym: "T1 Ts1" EXACT [FlyBase:FBrf0219028] xref: FBbt:00004670 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004648 ! insect metatarsus is_a: UBERON:6004668 ! insect prothoracic tarsal segment relationship: develops_from UBERON:6110746 ! insect presumptive prothoracic metatarsus [Term] id: UBERON:6004788 name: insect adult external abdomen xref: FBbt:00004788 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003023 ! insect adult abdomen relationship: part_of UBERON:6005396 ! insect adult integumentary system [Term] id: UBERON:6004823 name: insect analia def: "The set of external structures of adult abdominal segment(s) that makes up the anal apparatus." [PMID:27747420] xref: FBbt:00004823 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001784 ! insect genital disc relationship: part_of UBERON:6004788 ! insect adult external abdomen [Term] id: UBERON:6004824 name: insect female analia xref: FBbt:00004824 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004823 ! insect analia relationship: develops_from UBERON:6001787 ! insect female genital disc [Term] id: UBERON:6004825 name: insect male analia xref: FBbt:00004825 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004823 ! insect analia relationship: develops_from UBERON:6001785 ! insect male genital disc [Term] id: UBERON:6004979 name: insect trichome def: "Non-innervated projection of the cuticle around an actin-rich cellular process of an underlying epidermal cell." [FBC:DOS] synonym: "cell hair" RELATED [] xref: FBbt:00004979 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization [Term] id: UBERON:6004983 name: insect embryonic/larval cuticle synonym: "larval cuticle" EXACT [] xref: FBbt:00004983 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001001 ! chitin-based cuticle relationship: part_of UBERON:6005393 ! insect embryonic/larval integumentary system [Term] id: UBERON:6004986 name: insect third instar larval cuticle xref: FBbt:00004986 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004983 ! insect embryonic/larval cuticle [Term] id: UBERON:6005023 name: insect imaginal precursor def: "Structure that proliferates to produce a larval imaginal disc and which gives rise to adult tissues (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] xref: FBbt:00005023 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:6005036 name: insect tracheal pit def: "Deep and narrow pit formed by the invagination of a tracheal placode in a late extended germ band embryo. Invagination of the placode begins during stage 11. Branches begin to bud from the pit during stage 11, with a dorsal and ventral stem being apparent by mid-stage 12. The pit closes over during stage 13. There are 10 pairs of tracheal pits - one pair in each tracheal metamere (each segment from T2 to A8). Pits are located in the central one third of each parasegment, with the most anterior in parasegment 4 and the most posterior in parasegment 14." [FlyBase:FBrf0064787, FlyBase:FBrf0089570] synonym: "embryonic tracheal pit" EXACT [] synonym: "tracheal sac" EXACT [FlyBase:FBrf0147036] xref: FBbt:00005036 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005037 ! insect tracheal primordium [Term] id: UBERON:6005037 name: insect tracheal primordium def: "Primordium of a single tracheal metamere of the embryonic/larval tracheal system from its appearance as a placode during stage 11 to the completion of fusion with adjacent tracheal metameres in stage 15/16. There are 10 pairs of tracheal primordia - one pair in each segment from T2 to A8. Each tracheal primordium originates as a slight depression in the lateral ectoderm during stage 10 known as a tracheal placode. During stage 11, these placodes invaginate to form tracheal pits that elongate and branch. These pits close over during stage 13. Fusion of tracheal primordia begins at stage 14 with fusion of the dorsal trunk primordia and is complete by early stage 16." [FlyBase:FBrf0089570] synonym: "P2 TrachP" EXACT [FBC:DOS] synonym: "tracheal placode" RELATED [] synonym: "TrachP3" RELATED [] xref: FBbt:00005037 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6007046 ! insect dorsal ectoderm derivative relationship: part_of UBERON:6005569 ! insect presumptive embryonic/larval tracheal system [Term] id: UBERON:6005043 name: insect trachea def: "Cuticle-lined epithelial tube that forms part of the insect tracheal system." [FBbt:00005043] synonym: "trachea" BROAD SENSU [NCBITaxon:50557] xref: FBbt:00005043 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0003127 ! open tracheal system trachea [Term] id: UBERON:6005054 name: insect spiracle def: "Opening of the tracheal system on the surface of the body." [FlyBase:FBrf0166419] xref: FBbt:00005054 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007288 ! insect integumentary specialisation relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: UBERON:6005070 name: obsolete visceral muscle def: "The visceral musculature comprises circular and longitudinal fibers which surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly." [FlyBase:FBrf0064793, FlyBase:FBrf0089570, https://github.com/obophenotype/insect_neuroanatomy_ontology/issues/8] is_obsolete: true consider: CL:0008007 consider: FBbt:00005070 [Term] id: UBERON:6005096 name: insect stomatogastric nervous system def: "A group of small, interconnected ganglia situated posterior to and between the two brain hemispheres and associated with the pharynx, esophagus and aorta." [FlyBase:FBrf0089570, PMID:12966498] synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704] synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704] xref: FBbt:00005096 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:8910000 ! stomatogastric nervous system relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:6005168 name: insect external sensory organ synonym: "sensillum" NARROW [] xref: FBbt:00005168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:6005177 name: insect chaeta def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, FlyBase:FBrf0166419] synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704] xref: FBbt:00005177 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007232 ! insect eo-type sensillum [Term] id: UBERON:6005378 name: insect wing margin def: "The border or edge of the wing. It separates the dorsal and ventral compartments." [FBC:gg] synonym: "margin" BROAD [] xref: FBbt:00005378 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: UBERON:6005380 name: insect pharynx def: "Section of the insect foregut anterior to the esophagus." [FBbt:00005380, http://orcid.org/0000-0002-6601-2165] xref: FBbt:00005380 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0006562 {note="parent may be obsoleted"} ! pharynx relationship: part_of UBERON:0003929 {source="FBbt"} ! digestive tract epithelium [Term] id: UBERON:6005393 name: insect embryonic/larval integumentary system synonym: "larval integumentary system" RELATED [] xref: FBbt:00005393 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002416 ! integumental system relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:6005396 name: insect adult integumentary system synonym: "adult external" RELATED [] synonym: "adult integument" EXACT [] xref: FBbt:00005396 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002416 ! integumental system relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6005413 name: obsolete insect anlage in statu nascendi comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI is_obsolete: true consider: UBERON:0007688 [Term] id: UBERON:6005425 name: obsolete insect visual anlage in statu nascendi comment: No need for such a specific term in Uberon. See https://github.com/obophenotype/uberon/issues/2154. is_obsolete: true [Term] id: UBERON:6005427 name: insect ectoderm anlage xref: FBbt:00005427 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage [Term] id: UBERON:6005428 name: obsolete insect dorsal ectoderm anlage comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI is_obsolete: true consider: UBERON:6005427 [Term] id: UBERON:6005434 name: obsolete insect visual anlage comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI is_obsolete: true consider: UBERON:6001059 [Term] id: UBERON:6005436 name: obsolete insect trunk mesoderm anlage comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI is_obsolete: true consider: UBERON:6000128 [Term] id: UBERON:6005439 name: obsolete insect clypeo-labral anlage comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI is_obsolete: true consider: UBERON:6005538 [Term] id: UBERON:6005461 name: insect circulatory system primordium synonym: "embryonic/larval circulatory system specific anlage" RELATED [] xref: FBbt:00005461 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium [Term] id: UBERON:6005467 name: insect lymph gland primordium def: "Primordium of the insect embryo that gives rise to the embryonic/larval lymph gland." [ISBN:9783540570790] synonym: "lymph gland specific anlage" RELATED [] xref: FBbt:00005467 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6005461 ! insect circulatory system primordium relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 relationship: develops_from UBERON:6005541 ! insect cardiogenic mesoderm [Term] id: UBERON:6005514 name: insect adult clypeo-labral primordium synonym: "A AdCly" RELATED [FBC:DOS] xref: FBbt:00005514 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:6001648 ! insect embryonic imaginal precursor relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium relationship: part_of UBERON:0000323 ! late embryo [Term] id: UBERON:6005526 name: insect dorsal epidermis primordium synonym: "dorEpiP2" RELATED [] synonym: "dorsal epidermis specific anlage" RELATED [] xref: FBbt:00005526 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6007046 ! insect dorsal ectoderm derivative [Term] id: UBERON:6005533 name: insect ventral epidermis primordium synonym: "P2 iVenEp" RELATED [FBC:DOS] synonym: "venEpiP2" RELATED [] xref: FBbt:00005533 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025993 ! insect ventral ectoderm derivative relationship: develops_from UBERON:0002346 ! neurectoderm [Term] id: UBERON:6005538 name: insect clypeo-labral primordium synonym: "ClyP2" RELATED [] xref: FBbt:00005538 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative [Term] id: UBERON:6005541 name: insect cardiogenic mesoderm synonym: "cardiac mesoderm" EXACT [] synonym: "cardiac mesoderm primordium" RELATED [] synonym: "CardMes" EXACT [] synonym: "CardMesP2" EXACT [] synonym: "P2 CardMes" EXACT [FBC:DOS] is_a: UBERON:6026002 ! insect visceral mesoderm derivative relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:6005558 name: insect ventral ectoderm def: "Ventral part of the insect trunk ectoderm." [ISBN:9783540570790] synonym: "P2 VenEc" RELATED [FBC:DOS] synonym: "venEc" RELATED [] xref: FBbt:00005558 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:6007045 ! insect trunk ectoderm [Term] id: UBERON:6005569 name: insect presumptive embryonic/larval tracheal system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval tracheal system. This corresponds to the tracheal primordia and their component tracheal branch primordia along with primordia of the spiracles." [FBC:DOS] synonym: "embryonic tracheal system" RELATED [FBC:DOS] xref: FBbt:00005569 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system [Term] id: UBERON:6005805 name: insect Bolwig organ def: "Visual organ of the larva. It consists of a dense cluster of 12 ciliated photoreceptor neurons." [FlyBase:FBrf0089570] synonym: "Bolwig's organ" EXACT [] synonym: "dorsocaudal pharyngeal sense organ" RELATED [] synonym: "embryonic Bolwig's organ" EXACT [] synonym: "embryonic visual system" EXACT [] synonym: "larval Bolwig's organ" EXACT [] xref: FBbt:00005805 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000970 ! eye is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6002642 ! insect embryonic/larval ocular segment sensillum is_a: UBERON:6007233 ! insect internal sensillum is_a: UBERON:6007242 ! insect embryonic/larval head sensillum relationship: develops_from UBERON:6005830 ! insect Bolwig organ primordium relationship: part_of UBERON:0000323 ! late embryo [Term] id: UBERON:6005830 name: insect Bolwig organ primordium def: "Primordium of the insect embryo that gives rise to the larval Bolwig organ." [ISBN:9783540570790] synonym: "Bolwig's organ primordium" EXACT [] synonym: "P1 BolOrg" RELATED [FBC:DOS] xref: FBbt:00005830 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: develops_from UBERON:6001059 ! insect visual primordium [Term] id: UBERON:6005831 name: insect dorsal imaginal precursor xref: FBbt:00005831 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005023 ! insect imaginal precursor [Term] id: UBERON:6005913 name: insect arista lateral def: "A bristle-like, non-innervated outgrowth of the arista. Each lateral is formed from the outgrowth of a single polyploid central core cell." [FlyBase:FBrf0137012] xref: FBbt:00005913 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004979 ! insect trichome relationship: part_of UBERON:6004519 ! insect arista [Term] id: UBERON:6006011 name: insect pharate adult def: "The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion." [FlyBase:FBrf0049147] xref: FBbt:00006011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000468 ! multicellular organism relationship: develops_from UBERON:0003143 ! pupa [Term] id: UBERON:6006032 name: insect mesothoracic tergum primordium def: "Region of the dorsal mesothoracic disc that will develop into the mesothoracic tergum." [FBC:DOS, FlyBase:FBrf0027793] xref: FBbt:00006032 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of UBERON:6001778 ! insect wing disc [Term] id: UBERON:6007020 name: insect metatarsus of male prothoracic leg def: "First tarsal segment of the male prothoracic leg. In contrast to females, it has a sex comb, central bristle and 5 to 6 transverse rows of bristles (TR)." [FlyBase:FBrf0012178, FlyBase:FBrf0031004, FlyBase:FBrf0219028] xref: FBbt:00007020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004670 ! insect prothoracic metatarsus relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:6007045 name: insect trunk ectoderm def: "The region of the ectoderm posterior to the cephalic furrow." [FBC:DOS] xref: FBbt:00007045 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:6007046 name: insect dorsal ectoderm derivative def: "An insect embryonic structure that develops from the dorsal ectoderm." [ISBN:9783540570790] is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6000112 ! insect dorsal ectoderm [Term] id: UBERON:6007070 name: insect centro-posterior medial synaptic neuropil domain def: "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-lateral compartment by the peduncle, and from the centro-posterior intermediate compartment by the antenno-cerebral tract to which it is connected via a branch." [FlyBase:FBrf0155900] synonym: "centro-posterior medial neuropil" EXACT [] synonym: "centro-posterior medial synaptic neuropil domain" EXACT [] synonym: "CPM" RELATED [] synonym: "larval central complex" EXACT [] xref: FBbt:00007070 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6040007 ! insect synaptic neuropil domain relationship: part_of UBERON:6001925 ! insect embryonic/larval protocerebrum [Term] id: UBERON:6007116 name: insect presumptive embryonic/larval system def: "The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo." [FBC:DOS] xref: FBbt:00007116 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6040003 ! insect non-connected developing system [Term] id: UBERON:6007145 name: insect adult protocerebrum def: "Protocerebrum of the adult brain." [FBC:SPR] xref: FBbt:00007145 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6003011 ! insect adult labral segment relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion [Term] id: UBERON:6007149 name: segment of antenna def: "Any appendage segment that is part of some antenna." [FBC:auto_generated_definition] xref: FBbt:00007149 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010758 ! subdivision of organism along appendicular axis relationship: part_of UBERON:0000972 ! antenna [Term] id: UBERON:6007150 name: insect segment of leg def: "Any appendage segment that is part of some leg." [FBC:auto_generated_definition] xref: FBbt:00007150 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010758 ! subdivision of organism along appendicular axis relationship: part_of UBERON:0005895 ! insect leg [Term] id: UBERON:6007231 name: insect external sensillum def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS] xref: FBbt:00007231 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6005168 ! insect external sensory organ [Term] id: UBERON:6007232 name: insect eo-type sensillum def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570] synonym: "eso" RELATED [] xref: FBbt:00007232 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007231 ! insect external sensillum [Term] id: UBERON:6007233 name: insect internal sensillum def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] xref: FBbt:00007233 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6007373 ! insect internal sense organ [Term] id: UBERON:6007240 name: insect embryonic/larval sensillum def: "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] synonym: "larval sensillum" EXACT [] xref: FBbt:00007240 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6002639 ! insect larval sense organ [Term] id: UBERON:6007242 name: insect embryonic/larval head sensillum def: "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sensillum" NARROW [] xref: FBbt:00007242 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000963 ! head sensillum is_a: UBERON:6007240 ! insect embryonic/larval sensillum is_a: UBERON:6007280 ! insect embryonic/larval head sense organ [Term] id: UBERON:6007245 name: insect cuticular specialization xref: FBbt:00007245 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001001 ! chitin-based cuticle [Term] id: UBERON:6007248 name: insect chorionic specialization def: "Specialized structure of the chorion of the egg." [FBC:MMC] xref: FBbt:00007248 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000920 ! egg chorion [Term] id: UBERON:6007280 name: insect embryonic/larval head sense organ def: "Any sense organ (UBERON:6005155) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sense organ" EXACT [] xref: FBbt:00007280 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6002639 ! insect larval sense organ relationship: part_of UBERON:6001730 ! insect larval head [Term] id: UBERON:6007284 name: insect region of integument def: "A region of cuticle and its underlying epidermis." [FBC:DOS] xref: FBbt:00007284 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:6007285 name: insect segmental subdivision of integument def: "A segmental subdivision of the integument of the whole animal." [FBC:DOS] xref: FBbt:00007285 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007288 name: insect integumentary specialisation xref: FBbt:00007288 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007289 name: insect tagmatic subdivision of integument xref: FBbt:00007289 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007331 name: insect segmental subdivision of organ system def: "The part of some organism that is part of some specified segment." [FBC:DOS] xref: FBbt:00007331 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011216 ! organ system subdivision [Term] id: UBERON:6007373 name: insect internal sense organ def: "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] xref: FBbt:00007373 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:6007424 name: insect epithelial furrow def: "A region of an epithelium that folds inwards from the epithelial plane to form a furrow." [FBC:DOS] xref: FBbt:00007424 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:6007435 name: obsolete endocrine system component synonym: "endocrine organ" RELATED [] is_obsolete: true consider: FBbt:00007435 [Term] id: UBERON:6016022 name: insect abdominal histoblast primordium def: "A primordium of the insect embryo that gives rise to the larval abdominal histoblast nests." [ISBN:9780879698997] synonym: "abdominal histoblast specific anlage" RELATED [] xref: FBbt:00016022 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 relationship: develops_from UBERON:6017021 ! insect abdominal histoblast anlage [Term] id: UBERON:6017021 name: insect abdominal histoblast anlage def: "A population of cells of the insect epidermis primordium that give rises to the abdominal histoblast primordium." [ISBN:9780879698997] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 relationship: develops_from UBERON:6005526 ! insect dorsal epidermis primordium [Term] id: UBERON:6025991 name: insect anterior ectoderm derivative def: "An insect embryonic structure that develops from the anterior ectoderm." [ISBN:9783540570790] is_a: UBERON:0004121 ! ectoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: develops_from UBERON:6000119 ! insect anterior ectoderm [Term] id: UBERON:6025993 name: insect ventral ectoderm derivative def: "An insect embryonic structure that develops from the ventral ectoderm." [ISBN:9783540570790] is_a: UBERON:0004121 ! ectoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: develops_from UBERON:6005558 ! insect ventral ectoderm [Term] id: UBERON:6026000 name: insect trunk mesoderm derivative def: "An insect embryonic structure that develops from the trunk mesoderm." [ISBN:9783540570790] is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: develops_from UBERON:6000128 ! insect trunk mesoderm [Term] id: UBERON:6026002 name: insect visceral mesoderm derivative def: "An insect embryonic structure that develops from the visceral mesoderm." [ISBN:9783540570790] is_a: UBERON:6026000 ! insect trunk mesoderm derivative relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: develops_from UBERON:6000130 ! insect visceral mesoderm [Term] id: UBERON:6040003 name: insect non-connected developing system def: "The sum of all the anlagen and primordia that will develop into a single system." [FBC:DOS] xref: FBbt:00040003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0034923 ! disconnected anatomical group [Term] id: UBERON:6040005 name: insect synaptic neuropil def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] xref: FBbt:00040005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 ! material anatomical entity relationship: part_of UBERON:0002606 ! neuropil [Term] id: UBERON:6040007 name: insect synaptic neuropil domain def: "Region of synaptic neuropil whose boundaries are largely discontinuities in the density of presynaptic terminals: high density in the synaptic neuropil domain, lower or zero density outside this region. These boundaries often correspond to a boundary with glial sheath, tract neuropil or cortex." [FlyBase:FBrf0155900, FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "fibrous neuropil" RELATED [] synonym: "synaptic neuropil" RELATED [] xref: FBbt:00040007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:6040005 ! insect synaptic neuropil [Term] id: UBERON:6041000 name: insect synaptic neuropil block def: "A closely associated group of synaptic neuropil domains." [FBC:DOS, FBC:KI] synonym: "level 1 neuropil" EXACT [FlyBase:FBrf0224194] xref: FBbt:00041000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034923 ! disconnected anatomical group relationship: part_of UBERON:6040005 ! insect synaptic neuropil [Term] id: UBERON:6057001 name: obsolete insect anterior-posterior subdivision of organism comment: Obsoleted as it is redundant with 'subdivision of organism along main body axis', which is not restricted to insects. is_obsolete: true consider: UBERON:0011676 [Term] id: UBERON:6100153 name: insect sensilla row def: "A row of sensilla." [FBC:DOS] xref: FBbt:00100153 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034926 ! anatomical row [Term] id: UBERON:6110636 name: insect adult cerebral ganglion def: "The pre-oral neuropils of the adult brain located above, around and partially below the esophagus, including the optic lobes. It excludes the gnathal ganglion. Developmentally, it comprises three fused neuromeres: protocerebrum, deutocerebrum, and tritocerebrum." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "brain" RELATED [] synonym: "cerebrum" RELATED [] synonym: "CRG" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] synonym: "SPG" RELATED [] synonym: "supraesophageal ganglion" RELATED [] xref: FBbt:00110636 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003626 ! insect supraesophageal ganglion relationship: part_of UBERON:6003624 ! insect adult brain [Term] id: UBERON:6110746 name: insect presumptive prothoracic metatarsus def: "Region of the prothoracic leg disc that will develop into the prothoracic metatarsus." [FlyBase:FBrf0219028] xref: FBbt:00110746 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001781 ! insect prothoracic leg disc [Term] id: UBERON:6110811 name: insect presumptive arista def: "Region of the antennal disc that will develop into the arista." [FlyBase:FBrf0031004] xref: FBbt:00110811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001767 ! insect antennal disc [Term] id: UBERON:7500033 name: obsolete distal-most point of medial condyle of femur def: "OBSOLETE The distal-most point of the medial condyle of a femur." [https://orcid.org/0000-0003-2699-3066] comment: too specific of a term is_obsolete: true replaced_by: UBERON:0009984 [Term] id: UBERON:7500034 name: obsolete distal-most point of trochlea of humerus def: "OBSOLETE The distal-most point of the trochlea of a humerus." [https://orcid.org/0000-0003-2699-3066] comment: too specific of a term. is_obsolete: true replaced_by: UBERON:0000144 [Term] id: UBERON:7500035 name: obsolete tip of tail def: "OBSOLETE Outermost point of a tail." [https://orcid.org/0000-0003-2699-3066] comment: term already exists is_obsolete: true replaced_by: UBERON:0010162 [Term] id: UBERON:7500036 name: obsolete line from caundal-sacral region of the vertebral column to the last vertebra def: "OBSOLETE An anatomical line along a tail that extends from the first caudal vertebra to the last cuadal vertebra." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in OBA as tail length (http://purl.obolibrary.org/obo/OBA_VT0002758). is_obsolete: true consider: OBA:VT0002758 [Term] id: UBERON:7500037 name: obsolete line from helix of outer ear to intertragus incisure def: "OBSOLETE An anatomical line of a ear that connects the helix of the outer ear to the intertragus incisure of an ear." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as ear length to notch (FOVT:0000005). is_obsolete: true consider: FOVT:0000005 [Term] id: UBERON:7500038 name: obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot def: "OBSOLETE An anatomical line of a hindfoot that connects the distal-most part of the longest nail to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length with nail (FOVT:0000003). is_obsolete: true consider: FOVT:0000003 [Term] id: UBERON:7500039 name: obsolete posterior of pes def: "OBSOLETE The posterior-most point of a foot." [https://orcid.org/0000-0003-2699-3066] comment: already exists (sole of foot) is_obsolete: true replaced_by: UBERON:0008338 [Term] id: UBERON:7500040 name: obsolete tip of nail def: "OBSOLETE The distal-most point of a cutaneous appendage." [https://orcid.org/0000-0003-2699-3066] comment: no longer needed is_obsolete: true consider: UBERON:0001705 [Term] id: UBERON:7500041 name: obsolete tip of digit def: "The distal-most point of a digit." [https://orcid.org/0000-0003-2699-3066] comment: duplicate with UBERON:0009551 'distal segment of digit'. is_obsolete: true consider: UBERON:0009551 [Term] id: UBERON:7500042 name: obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot def: "OBSOLETE An anatomical line of a hindfoot that connects the end of the longest digit to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length without nail (FOVT:0000004). is_obsolete: true consider: FOVT:0000004 [Term] id: UBERON:7500043 name: obsolete line from tip of nose to the caudal-sacral region of the vertebral column def: "OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of the sacrum." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length without tail (FOVT:0000002). is_obsolete: true consider: FOVT:0000002 [Term] id: UBERON:7500044 name: obsolete line from tip of nose to the posterior-most part of the last caudal vertebra def: "OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of a tail." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length with tail (FOVT:0000001). is_obsolete: true consider: FOVT:0000001 [Term] id: UBERON:7500045 name: obsolete line of medial condyle of femur to greater trochanter def: "OBSOLETE An anatomical line of a femur that connects the medial condyle to the greater trochanter." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from greater trochanter to medial condyle (FOVT:0000006). is_obsolete: true consider: FOVT:0000006 [Term] id: UBERON:7500046 name: proximal-most point of head of femur def: "The proximal-most point of the head of a femur." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500047 name: proximal-most point of head of humerus def: "The proximal-most point of the head of a humerus." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500048 name: proximal-most point of ventral tubercle of humerus def: "The proximal-most point of the ventral tubercle of a humerus." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500049 name: proximal-most point of greater trochanter of femur def: "The proximal-most point of the greater trochanter of a femur." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500050 name: obsolete line of medial condyle of femur to head of femur def: "OBSOLETE An anatomical line of a femur that connects the medial condyle to the head of a femur." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from caput to medial condyle (FOVT:0000007). is_obsolete: true consider: FOVT:0000007 [Term] id: UBERON:7500051 name: obsolete line from trochlea of humerus to proximal head of humerus def: "OBSOLETE An anatomical line of a humerus that connects the trochlea to the proximal head." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to caput (FOVT:0000008). is_obsolete: true consider: FOVT:0000008 [Term] id: UBERON:7500052 name: lower fourth secondary molar tooth def: "The molar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "lower fourth permanent molar tooth" EXACT [] synonym: "m4" RELATED OMO:0003000 [] is_a: UBERON:0013621 ! lower secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500053 name: lower fourth secondary premolar tooth def: "The premolar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "lower fourth permanent premolar tooth" EXACT [] synonym: "p4" RELATED OMO:0003000 [] is_a: UBERON:0016453 ! lower secondary premolar tooth is_a: UBERON:0018647 ! premolar tooth 4 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500054 name: lower third secondary premolar tooth def: "The premolar tooth of the lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] synonym: "lower third permanent premolar tooth" EXACT [] synonym: "p3" RELATED OMO:0003000 [] is_a: UBERON:0016453 ! lower secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500055 name: molar tooth 4 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "fourth molar tooth" EXACT [] synonym: "molar 4" EXACT [] synonym: "molar 4 tooth" EXACT [] is_a: UBERON:0003655 ! molar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500056 name: premolar 3 def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] synonym: "premolar tooth 3" EXACT [] synonym: "third premolar tooth" EXACT [] is_a: UBERON:0007120 ! premolar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500057 name: upper fourth secondary molar tooth def: "The molar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "M4" RELATED OMO:0003000 [] synonym: "upper fourth permanent molar tooth" EXACT [] is_a: UBERON:0013619 ! upper secondary molar tooth is_a: UBERON:7500055 ! molar tooth 4 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500058 name: upper fourth secondary premolar tooth def: "The premolar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "P4" RELATED OMO:0003000 [] synonym: "upper fourth permanent premolar tooth" EXACT [] is_a: UBERON:0016452 ! upper secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500059 name: upper third secondary premolar tooth def: "The premolar tooth of the upper jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] synonym: "P3" RELATED OMO:0003000 [] synonym: "upper third permanent premolar tooth" EXACT [] is_a: UBERON:0016452 ! upper secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500060 name: obsolete line from trochlea of humerus to ventral tubercle of humerus def: "OBSOLETE An anatomical line of a humerus that connects the trochlea to the ventral tubercle." [https://orcid.org/0000-0003-2699-3066] comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to ventral tubercle (FOVT:0000009). is_obsolete: true consider: FOVT:0000009 [Term] id: UBERON:7500061 name: trochlear ridge of humerus def: "The ridge of the trochlea on a humerus lies in the middle of the distal end of a humerus on the lateral side of the trochlea and the medial side of the capitulum (capitellum)." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0000144 ! trochlea of humerus [Term] id: UBERON:7500062 name: tibial tuberosity def: "The tibial tuberosity is on the anterior side of a tibia and is where a patella ligament attaches." [https://en.wikipedia.org/wiki/Tuberosity_of_the_tibia] synonym: "fossa digitalis" EXACT [] is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0008772 ! proximal epiphysis of tibia [Term] id: UBERON:7500063 name: trochlea of talus def: "The articular surface of a talus that interacts with a tibia. It has a deep depression that forms the trochlear groove and is bounded by the medial and lateral condyles." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "trochlea for tibia" EXACT [] synonym: "trochlea of astragalus" EXACT [] synonym: "trochlea tali" EXACT [] is_a: UBERON:7500081 ! articular surface for the tibia on the talus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500064 name: trochlear groove of talus def: "The furrow between the lateral and medial condyles of the trochlea of talus." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "trochlear groove of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:7500065 name: condyle of talus def: "An articular prominence of a talus that engages with the tibia." [http://orcid.org/0000-0003-2699-3066] synonym: "condyle of astragalus" EXACT [] is_a: UBERON:0009979 ! condyle relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:7500066 name: medial condyle of talus def: "The medial condyle of talus is an articular prominence of bone on medial side of the trochlea of a talus, which engages with the tibia." [https://orcid.org/0000-0003-2699-3066] synonym: "medial condyle of astragalus" EXACT [] is_a: UBERON:7500065 ! condyle of talus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500067 name: lateral condyle of talus def: "The lateral condyle of talus is an articular prominence of bone on the lateral side of the trochlea of a talus, which engages with the tibia." [https://orcid.org/0000-0003-2699-3066] synonym: "lateral condyle of astragalus" EXACT [] is_a: UBERON:7500065 ! condyle of talus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500068 name: ridge of medial condyle of talus def: "The crest of the medial condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of medial condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500066 ! medial condyle of talus [Term] id: UBERON:7500069 name: ridge of lateral condyle of talus def: "The crest of the lateral condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of lateral condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500067 ! lateral condyle of talus [Term] id: UBERON:7500070 name: sulcus tali def: "A depression that runs between the two facets of a talus that interact with a calcaneum." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "sulcus for flexor hallucis longus tendon" EXACT [] is_a: UBERON:0000093 ! sulcus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:7500071 name: rostrum def: "An anatomical structure that protrudes from the head region. In vertebrates, this includes the part of the cranium (skull) in front of the zygomatic arches that also holds the teeth, palat, and nasal cavity. In invertebrates it is the forward extension of the carapace and/or the piercing mouthparts." [http://orcid.org/0000-0003-2699-3066] synonym: "beak" RELATED [] synonym: "muzzle" RELATED [] synonym: "snout" RELATED [] is_a: UBERON:0000475 ! organism subdivision relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: never_in_taxon NCBITaxon:9606 relationship: part_of UBERON:0003128 ! cranium relationship: part_of UBERON:0004089 ! midface [Term] id: UBERON:7500073 name: left nasal bone def: "Nasal bone on the left side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] is_a: UBERON:0001681 ! nasal bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500074 name: right nasal bone def: "Nasal bone on the right side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] is_a: UBERON:0001681 ! nasal bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500075 name: left zygomatic arch def: "Zygomatic arch on the left side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] is_a: UBERON:0002500 ! zygomatic arch relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500076 name: right zygomatic arch def: "Zygomatic arch on the right side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] is_a: UBERON:0002500 ! zygomatic arch relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500077 name: obsolete trochlea of femur def: "A trochlea on the distal end of a femur that interacts with the patella." [https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/patellar-surface] property_value: dcterms-date "2021-06-02T00:19:07Z" xsd:dateTime is_obsolete: true replaced_by: UBERON:4200096 [Term] id: UBERON:7500078 name: styloid process of radius def: "A condyle on the distal end and lateral side of a radius." [https://en.wikipedia.org/wiki/Radial_styloid_process] synonym: "radial condyle" EXACT [] synonym: "radial styloid process" EXACT [] is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0004407 ! distal epiphysis of radius [Term] id: UBERON:7500079 name: ulnar notch of radius def: "A condyle on the distal end and medial side of a radius that interacts with the ulna." [https://en.wikipedia.org/wiki/Ulnar_notch_of_the_radius] synonym: "sigmoid cavity" EXACT [] synonym: "ulnar condyle of radius" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0004407 ! distal epiphysis of radius [Term] id: UBERON:7500080 name: articular surface for carpals def: "The articular surface on the distal end of a radius that interacts with carpals." [https://orcid.org/0000-0003-2699-3066] synonym: "distal articular surface of radius" EXACT [] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0004407 ! distal epiphysis of radius [Term] id: UBERON:7500081 name: articular surface for the tibia on the talus def: "Contact surface between the tibia and the talus located on the talus." [https://en.wikipedia.org/wiki/Talus_bone] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:7500083 name: greater palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate, for the transmission of the descending palatine vessels and greater palatine nerve." [FMA:53173, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Greater_palatine_foramen&oldid=971687677] is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone [Term] id: UBERON:7500084 name: lesser palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate behind the greater palatine foramen. One or more lesser palatine foramina perforate the pyramidal process of the palatine bone and carry the lesser palatine nerve." [FMA:53167, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Lesser_palatine_foramina&oldid=870872639] is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone [Term] id: UBERON:7500085 name: endodontium def: "A pulp-dentin complex or endodont that is part of a calcareous tooth." [https://en.wikipedia.org/wiki/Pulp_(tooth)] {comment="PMID: 29345716"} synonym: "endodont" EXACT [] synonym: "pulp-dentin complex" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010365 ! odontoid tissue relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:7500088 name: obsolete distal articular surface of radius comment: already made this term property_value: dcterms-date "2021-08-03T21:28:12Z" xsd:dateTime is_obsolete: true replaced_by: UBERON:7500080 [Term] id: UBERON:7500089 name: posterior articular facet for talus of calcaneus def: "Posterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "proximal facet of calcaneum" EXACT [] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:7500091 name: middle articular facet for talus of calcaneus def: "Middle facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:7500092 name: anterior articular facet for talus of calcaneus def: "Anterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "distal facet of calcaneum" EXACT [] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:7500093 name: calcaneal body def: "The calcaneus body is the part of the bone not used for articulation with other bones." [https://orcid.org/0000-0003-2699-3066] synonym: "corpus calcanei" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:7500094 name: tubercle of calcaneus def: "A raised projection on the calcaneus." [https://orcid.org/0000-0003-2699-3066] synonym: "calcaneal tubercle" EXACT [] synonym: "calcaneal tuberosity" EXACT [] synonym: "tuberosity of calcaneus" EXACT [] is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus [Term] id: UBERON:7500095 name: lateral tubercle of calcaneus def: "A raised projection on the lateral side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] synonym: "lateral tuberosity of calcaneus" EXACT [] is_a: UBERON:7500094 ! tubercle of calcaneus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500096 name: medial tubercle of calcaneus def: "A raised projection on the medial side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] synonym: "medial tuberosity of calcaneus" EXACT [] is_a: UBERON:7500094 ! tubercle of calcaneus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500101 name: antorbital notch def: "The antorbital notch is a prominence of bone located anterolaterally of the antorbital fenestra." [doi:10.5479/si.00810282.627] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0003129 ! skull relationship: present_in_taxon NCBITaxon:9721 relationship: present_in_taxon NCBITaxon:9788 [Term] id: UBERON:7500102 name: preorbital bone region def: "Part of the orbital plate formed by the jugal (part of the zygomatic), lacrimal (which is sometimes fused), sometimes nasal (typically in species with elongated rostra), and maxilla bones anterior to the orbit." [https://doi.org/10.1111/let.12011] is_a: UBERON:0001062 ! anatomical entity relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001697 ! orbit of skull [Term] id: UBERON:7500103 name: preorbital fossa def: "A hollow (fossa) in the preorbital region, typically lying on the maxillary bone, although sometimes can touch nasal bones (e.g., modern Equus)." [http://hdl.handle.net/2246/997, ISSN:0001-0196] is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500102 ! preorbital bone region [Term] id: UBERON:7500105 name: coracoid process of calcaneus def: "At the dorsal part of the base of the calcaneal tuberoisty is a pointed process called the coracoid process." [https://link.springer.com/article/10.1007/s00276-003-0220-0, https://www.imaios.com/en/vet-Anatomy/Vet-Anatomical-Part/Coracoid-process2] synonym: "processus coracoideus of calcaneus" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500094 ! tubercle of calcaneus [Term] id: UBERON:7500106 name: hormion def: "A craniometric point at the junction of the posterior midline border of the vomer with the sphenoid bone on the sphenovomerine suture." [https://locatelambda.org/manual, https://medical-dictionary.thefreedictionary.com/hormion, ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500107 ! sphenovomerine suture property_value: depiction "http://locatelambda.org/wp-content/uploads/2018/02/hormion.jpg" xsd:string [Term] id: UBERON:7500107 name: sphenovomerine suture def: "A suture joining a sphenoid bone with the alae of a vomer to form a schindylesis type of joint." [DOI:10.1097/SCS.0000000000002945, PMID:27483100] is_a: UBERON:0009199 ! facial suture relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500108 name: cheek tooth def: "Any of the post-canine teeth, which are the multicuspidate molars or premolars used for shearing and grinding food in mammals." [Wikipedia:Cheek_teeth] synonym: "cheek teeth" RELATED OMO:0003004 [] synonym: "cheekteeth" RELATED OMO:0003004 [] synonym: "cheektooth" EXACT [] is_a: UBERON:0013164 ! molariform tooth relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500109 name: basion def: "An anatomical point on the antero-ventral margin of foramen magnum in the median plane." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0003687 ! foramen magnum [Term] id: UBERON:7500110 name: synsphenion def: "A craniometric point on the ventral surface of the intersphenoid suture, along the midline of the skull." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500111 ! intersphenoid suture [Term] id: UBERON:7500111 name: intersphenoid suture def: "A suture joining the basisphenoid bone and the presphenoid bone of a sphenoid bone." [ISBN:9780873659505] synonym: "intersphenoidal synchondrosis" EXACT [DOI:10.1038/s41598-022-04783-1] is_a: UBERON:0009199 ! facial suture relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 property_value: development_notes "This fuses in childhood in humans." xsd:string {xref="DOI:10.2214/ajr.104.1.184"} [Term] id: UBERON:7500112 name: prosthion def: "A craniometric point that is the most anterior point in the midline on the alveolar process of the maxilla between the incisors (premaxilla bone)." [DOI:10.1002/ar.a.10052, ISBN:97808736590505] comment: Often this point is midway between the median upper incisor teeth. In ruminants and pigs this point is projected into space. synonym: "alveolar point" EXACT [https://www.vocabulary.com/dictionary/alveolar%20point] synonym: "prostheon" EXACT [https://medical-dictionary.thefreedictionary.com/prostheon] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002244 ! premaxilla [Term] id: UBERON:7500113 name: akrokranion def: "The most dorsoanterior point on the supraoccipital crest in the medial plane." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:2001783 ! supraoccipital crest [Term] id: UBERON:7500114 name: cheek tooth row def: "An anatomical row consisting of adjacent cheek teeth." [https://orcid.org/0000-0003-2699-3066] synonym: "cheektooth row" EXACT [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:0009678 ! tooth row relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500115 name: sagittal crest def: "A ridge or similar projection rising above the surface of an anatomical strucuture along the sagittal (midline) plane." [https://orcid.org/0000-0003-2699-3066] synonym: "sagittal ridge" EXACT [] is_a: UBERON:4200133 ! crest relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500117 name: opisthocranion def: "A craniometric point which is the furthest point from the glabella along the midline." [https://locatelambda.org/manual/, ISBN:9780873659505, Wiktionary:opisthocranion] comment: In pigs this point is projected into space as a point between a line connecting the aboral points of the right and left superior nuchal lines. {xref="ISBN:9780873659505"} synonym: "opisthokranion" EXACT [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500118 name: opisthion def: "A craniometric point at the posterior margin of the foramen magnum along the midline." [https://locatelambda.org/manual/, ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0003687 ! foramen magnum property_value: depiction "http://locatelambda.org/wp-content/uploads/2018/02/opisthion.jpg" xsd:string [Term] id: UBERON:7500119 name: ectorbitale def: "An anatomical point on the most lateral point of the frontal bone of tetrapods on the occipital side of the orbit." [ISBN:9004086161, ISBN:9789004086166] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] id: UBERON:7500120 name: zygion def: "The most lateral anatomical point of the zygomatic arch." [ISBN:9004086161\,9789004086166] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002500 ! zygomatic arch [Term] id: UBERON:7500121 name: paroccipital process def: "A process of bone extending downward from the jugular process of the occipital bone." [https://medical-dictionary.thefreedictionary.com/paroccipital+process] comment: This process occurs in 0.5-2.0% of the human population. {xref="DOI:10.1016/j.wneu.2018.06.056"} synonym: "estiloid process" EXACT [DOI:10.1016/j.wneu.2018.06.056] synonym: "paracondylar" EXACT [DOI:10.1016/j.wneu.2018.06.056] synonym: "parajugular" EXACT [DOI:10.1016/j.wneu.2018.06.056] synonym: "paramastoid process" EXACT [DOI:10.1016/j.wneu.2018.06.056] synonym: "paraoccipital" EXACT [DOI:10.1016/j.wneu.2018.06.056] is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001676 ! occipital bone [Term] id: UBERON:7500123 name: incisor tooth 3 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] synonym: "third incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500124 name: incisor tooth 4 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "fourth incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500125 name: incisor tooth 5 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 5." [https://orcid.org/0000-0003-2699-3066] synonym: "fifth incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500126 name: molar tooth 5 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 5." [https://orcid.org/0000-0003-2699-3066] synonym: "fifth molar tooth" EXACT [] is_a: UBERON:0003655 ! molar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500127 name: otion def: "The most lateral anatomical point on the mastoid process of temporal bone." [http://desinfos.eu/archeozoologie.desinfos.eu/PERSO/Aides%20determination/Osteometrie/Von%20Den%20Driesch\,%201976\,%20A%20guide%20to%20the%20measurement%20of%20animal%20bones%20from%20archaeological%20sites.pdf, ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0011220 ! mastoid process of temporal bone property_value: depiction "ISSN:0372-5480, Fig. 1, \"Ot\" (https://intranet.vef.hr/vetarhiv/papers/2014-84-4-6.pdf)" xsd:string property_value: depiction "Ot in Fig. 1 of https://www.researchgate.net/profile/Stoyan-Stoyanov-16/publication/337812291_Cranial_variability_and_sexual_dimorphism_of_golden_jackal_in_Bulgaria/links/5deb763892851c836468e9cb/Cranial-variability-and-sexual-dimorphism-of-golden-jackal-in-Bulgaria.pdf" xsd:string [Term] id: UBERON:7500128 name: cranial temporal crest def: "A ridge or similar projection connected to the temporal lines and nuchal crest on the squamous part of the occipital bone. It bounds the posteroventral part of the temporal fossa." [https://www.researchgate.net/publication/325258124_Morphological_Study_on_the_Skull_of_Wild_Boar_of_Mizoram_Sus_scrofa] synonym: "temporal crest" RELATED [DOI:10.1016/j.asj.2009.01.011] is_a: UBERON:4100000 ! skeletal element projection is_a: UBERON:4200133 ! crest relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001676 ! occipital bone relationship: part_of UBERON:0001678 ! temporal bone property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2882" xsd:anyURI [Term] id: UBERON:7770005 name: ascending colon epithelium def: "An epithelial layer that lines the ascending colon." [https://orcid.org/0000-0003-4389-9821] synonym: "ascending colon epithelial layer" EXACT [] synonym: "epithelial layer of ascending colon" EXACT [] synonym: "epithelial tissue of ascending colon" EXACT [] synonym: "epithelium of ascending colon" EXACT [] is_a: UBERON:0000397 ! colonic epithelium relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001156 ! ascending colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:7770006 name: transverse colon epithelium def: "An epithelial layer that lines the transverse colon." [https://orcid.org/0000-0003-4389-9821] synonym: "epithelial layer of transverse colon" EXACT [] synonym: "epithelial tissue of transverse colon" EXACT [] synonym: "epithelium of transverse colon" EXACT [] synonym: "transverse colon epithelial layer" EXACT [] is_a: UBERON:0000397 ! colonic epithelium relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001157 ! transverse colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:7770007 name: descending colon epithelium def: "An epithelial layer that lines the descending colon." [https://orcid.org/0000-0003-4389-9821] synonym: "descending colon epithelial layer" EXACT [] synonym: "epithelial layer of descending colon" EXACT [] synonym: "epithelial tissue of descending colon" EXACT [] synonym: "epithelium of descending colon" EXACT [] is_a: UBERON:0000397 ! colonic epithelium relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001158 ! descending colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:7770008 name: sigmoid colon epithelium def: "An epithelial layer that lines the sigmoid colon." [https://orcid.org/0000-0003-4389-9821] synonym: "epithelial layer of sigmoid colon" EXACT [] synonym: "epithelial tissue of sigmoid colon" EXACT [] synonym: "epithelium of sigmoid colon" EXACT [] synonym: "sigmoid colon epithelial layer" EXACT [] is_a: UBERON:0000397 ! colonic epithelium relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001159 ! sigmoid colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8000000 name: first instar larva stage def: "The first stage of instar larva stage." [IDOMAL:0000656] is_a: UBERON:0004730 ! instar larval stage relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000001 name: second instar larva stage def: "The second stage of instar larva stage." [IDOMAL:0000657] is_a: UBERON:0004730 ! instar larval stage relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000002 name: third instar larva stage def: "The third stage of instar larva stage." [IDOMAL:0000658] synonym: "third instar larva" EXACT [] is_a: UBERON:0004730 ! instar larval stage relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000003 name: fourth instar larva stage def: "The fourth stage of instar larva stage." [IDOMAL:0000659] synonym: "fourth instar larva" EXACT [] is_a: UBERON:0004730 ! instar larval stage relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000004 name: central retina def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] is_a: UBERON:0000073 ! regional part of nervous system relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:8000005 name: Henle's fiber layer def: "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL)." [PMID:21071737] synonym: "Henle fiber layer" EXACT [] synonym: "HFL" EXACT [] synonym: "nerve fiber layer of Henle" EXACT [] is_a: UBERON:0022303 ! nervous system cell part layer relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:8000006 name: left side of back def: "Left part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane." [https://microbiomedb.org/] is_a: UBERON:0001137 ! dorsum is_a: UBERON:0015212 ! lateral structure relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000007 name: right side of back def: "Right part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane." [https://microbiomedb.org/] is_a: UBERON:0001137 ! dorsum is_a: UBERON:0015212 ! lateral structure relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000008 name: cementocyte lacuna def: "The small cavity within the cellular cementum that is occupied by a cementocyte cell body." [MP:0030555, PMID:27029548] is_a: UBERON:0002553 ! anatomical cavity relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0001753 ! cementum [Term] id: UBERON:8000009 name: Purkinje fiber network def: "A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles." [PMID:26786210] synonym: "Purkinje fibre network" EXACT [PMID:26786210] is_a: UBERON:0010131 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0004146 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! His-Purkinje system [Term] id: UBERON:8200002 name: copepodite stage 1 def: "A development stage of copepods which immediately follows the nauplius stage. It is characterized by the presence of 2 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: part_of UBERON:0014860 ! copepodite stage property_value: dcterms-date "2021-07-26T14:57:48Z" xsd:dateTime [Term] id: UBERON:8200003 name: copepodite stage 2 def: "A development stage of copepods which immediately follows copepodite stage 1. It is characterized by the presence of 3 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: part_of UBERON:0014860 ! copepodite stage property_value: dcterms-date "2021-07-26T15:07:18Z" xsd:dateTime [Term] id: UBERON:8200004 name: copepodite stage 3 def: "A development stage of copepods which immediately follows copepodite stage 2. It is characterized by the presence of 4 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: part_of UBERON:0014860 ! copepodite stage property_value: dcterms-date "2021-07-26T15:43:37Z" xsd:dateTime [Term] id: UBERON:8200005 name: copepodite stage 4 def: "A development stage of copepods which immediately follows copepodite stage 3. It is characterized by the presence of 5 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: part_of UBERON:0014860 ! copepodite stage property_value: dcterms-date "2021-07-26T15:45:12Z" xsd:dateTime [Term] id: UBERON:8200006 name: copepodite stage 5 def: "A pre-adult stage of copepods which immediately follows copepodite stage 4. It is characterized by enlargement of the urosome and development of sexual organs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: part_of UBERON:0000113 ! post-juvenile adult stage property_value: dcterms-date "2021-07-26T15:46:40Z" xsd:dateTime [Term] id: UBERON:8200007 name: copepodite stage 6 def: "A fully formed stage of copepods which immediately follows copepodite stage 5. It is characterized by the complete development of the fifth swimming leg." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: part_of UBERON:0000066 ! fully formed stage property_value: dcterms-date "2021-07-26T15:48:54Z" xsd:dateTime [Term] id: UBERON:8300000 name: skin of scalp def: "A zone of skin that is part of a scalp." [http://www.ncbi.nlm.nih.gov/books/NBK551565/] synonym: "adult scalp zone of skin" EXACT [] synonym: "scalp skin" EXACT [] synonym: "scalp zone of skin" EXACT [] synonym: "zone of skin of adult scalp" EXACT [] synonym: "zone of skin of scalp" EXACT [] xref: FMA:24757 is_a: UBERON:0001084 ! skin of head relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 relationship: part_of UBERON:0000403 ! scalp [Term] id: UBERON:8300001 name: right forelimb def: "A forelimb that is on the right side of a pectoral complex." [UBERONREF:0000003] xref: FMA:7185 is_a: UBERON:0002102 ! forelimb is_a: UBERON:0015212 ! lateral structure relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8300002 name: left forelimb def: "A forelimb that is on the left side of a pectoral complex." [UBERONREF:0000003] xref: FMA:7186 is_a: UBERON:0002102 ! forelimb is_a: UBERON:0015212 ! lateral structure relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8300003 name: right hindlimb def: "A hindlimb that is on the right side of a pelvic complex." [UBERONREF:0000003] xref: FMA:7187 is_a: UBERON:0002103 ! hindlimb is_a: UBERON:0015212 ! lateral structure relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8300004 name: left hindlimb def: "A hindlimb that is on the left side of a pelvic complex." [UBERONREF:0000003] xref: FMA:7188 is_a: UBERON:0002103 ! hindlimb is_a: UBERON:0015212 ! lateral structure relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8400001 name: hepatic acinus zone 1 def: "The region of the hepatic acinus that is closest to the arterial blood supply and has the highest oxygen concentration. Zone 1 is located in the periportal region of the liver lobule, closest to the portal triad. Hepatocytes in this region are primarily involved in oxidative energy metabolism." [PMID:29763190] synonym: "hepatic acinus periportal zone" EXACT [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0001172 ! hepatic acinus relationship: present_in_taxon NCBITaxon:40674 creation_date: 2020-09-08T14:14:21Z [Term] id: UBERON:8400002 name: hepatic acinus zone 3 def: "The region of the hepatic acinus immediately surrounding the central veins. This region has the lowest oxygen concentration in the acinus. Zone 3 is located in the centrilobular region of the liver lobule, closest to the central vein. Hepatocytes in this region are the primary location for the biotransformation of drugs." [PMID:29763190] synonym: "hepatic acinus centrilobular zone" EXACT [PMID:28126520] synonym: "hepatic acinus pericentral zone" EXACT [PMID:28126520] synonym: "hepatic acinus perivenous zone" EXACT [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0001172 ! hepatic acinus relationship: present_in_taxon NCBITaxon:40674 creation_date: 2020-09-08T15:05:03Z [Term] id: UBERON:8400003 name: hepatic acinus zone 2 def: "The region of the hepatic acinus in between zones 1 and 3. Blood in this region has an intermediate oxygen concentration relative to the other two zones of the hepatic acinus. Zone 2 is located in the midzonal region of the liver lobule. Hepatocytes in this region have mixed functionality in comparison with those in zones 1 and 3." [PMID:29763190] synonym: "hepatic acinus intermediary zone" EXACT [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0001172 ! hepatic acinus relationship: present_in_taxon NCBITaxon:40674 creation_date: 2020-09-08T15:15:57Z [Term] id: UBERON:8400005 name: metabolic zone of liver def: "Any of the metabolic zones found in the liver. Liver tissue is heterogenous at the level of morphometry and histochemistry. This heterogeneity is linked to the position of a cell within the functional unit of the tissue, which, in turn, is related to the blood supply: cells located in the upstream zone differ from those in the downstream zone with respect to subcellular structures, key enzymes, translocators, and receptors and, therefore, have different metabolic capacities. This is the basis for 'metabolic zonation', a concept first proposed in mammals for carbohydrate metabolism and later expanded to include amino acid and ammonia metabolism, xenobiotic metabolism, protective metabolism, and formation of plasma proteins." [DOI:10.1016/S0968-0004(78)91764-4, PMID:8839925] synonym: "hepatic acinus metabolic zone" EXACT [PMID:8839925] is_a: UBERON:0000063 ! organ subunit relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0002107 ! liver relationship: present_in_taxon NCBITaxon:40674 creation_date: 2020-09-29T15:45:36Z [Term] id: UBERON:8400006 name: liver lobule periportal region def: "The region of the liver lobule that is closest to the portal triad. The functionally-defined hepatic acinus zone 1 is generally found in this region." [PMID:28126520] synonym: "hepatic acinus zone 1" RELATED [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0004647 ! liver lobule relationship: present_in_taxon NCBITaxon:40674 creation_date: 2020-10-05T12:56:57Z [Term] id: UBERON:8400007 name: liver lobule centrilobular region def: "The region of the liver lobule that is closest to the central vein. The functionally-defined hepatic acinus zone 3 is generally found in this region." [PMID:28126520] synonym: "hepatic acinus zone 3" RELATED [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0004647 ! liver lobule relationship: present_in_taxon NCBITaxon:40674 creation_date: 2020-10-05T15:43:18Z [Term] id: UBERON:8400008 name: liver lobule midzonal region def: "The region of the liver lobule that is between the periportal and centrilobular regions. The functionally-defined hepatic acinus zone 2 is generally found in this region." [PMID:28126520] synonym: "hepatic acinus zone 2" RELATED [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0004647 ! liver lobule relationship: present_in_taxon NCBITaxon:40674 creation_date: 2020-10-05T15:52:22Z [Term] id: UBERON:8400021 name: liver serosa def: "Hepatic serous coat; peritoneal covering of the liver, enclosing almost all except for a triangular area on its posterior surface (the 'bare area of the liver') and a smaller area where the liver and gallbladder are in direct contact." [https://medical-dictionary.thefreedictionary.com/serosa+of+liver, https://orcid.org/0000-0002-0449-2730] synonym: "serosa of liver" EXACT [FMA:15811] synonym: "tunica serosa hepatis" EXACT OMO:0003011 [https://medical-dictionary.thefreedictionary.com/serosa+of+liver] is_a: UBERON:0000042 ! serous membrane relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:8400023 name: liver subserosa def: "Subserosal tissue of liver. A zone of areolar connective tissue lying beneath the serous coat of the liver and distinguished with difficulty from the fibrous capsule of Glisson." [FMA:15812, https://medical-dictionary.thefreedictionary.com/subserosa+of+liver, https://orcid.org/0000-0002-0449-2730] synonym: "hepatic subserosa" EXACT [] synonym: "subserosal tissue of liver" EXACT [] synonym: "subserous layer of liver" EXACT [] synonym: "tela subserosa (hepar)" EXACT [FMA:15821] synonym: "tela subserosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/subserosa+of+liver] is_a: UBERON:0012375 ! subserosa relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:8400024 name: subcapsular region of liver def: "Region of liver parenchyma immediately below the capsule. This region is frequently specified in pathology diagnoses." [https://orcid.org/0000-0002-0449-2730, PMID:30992875] synonym: "liver subcapsular region" EXACT [PMID:30992875] synonym: "liver subcapsular tissue" EXACT [PMID:30992875] synonym: "subcapsular tissue of liver" EXACT [PMID:30992875] is_a: UBERON:0001280 ! liver parenchyma relationship: dc-contributor https://orcid.org/0000-0003-2034-601X [Term] id: UBERON:8410000 name: duodeno-jejunal junction def: "The anatomical junction between the duodenum and the jejunum." [PMID:23961897, PMID:29064554] subset: human_reference_atlas synonym: "duodeno-jejunal flexure" EXACT [] synonym: "duodenojejunal flexure" EXACT [] synonym: "duodenojejunal junction" EXACT [] synonym: "flexura duodenojejunalis" EXACT OMO:0003011 [Wikipedia:Duodenojejunal_flexure] xref: FMA:15957 xref: https://orcid.org/0000-0003-4183-8865 xref: TA2:2952 xref: WikipediaVersioned:Duodenojejunal_flexure&oldid=937307798 is_a: UBERON:8410024 ! intestinal junction relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410001 name: small intestine venule def: "Venule of villus of small intestine." [https://orcid.org/0000-0003-4183-8865] subset: location_grouping synonym: "venule of small intestine" EXACT [] is_a: UBERON:0001979 ! venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001213 ! intestinal villus [Term] id: UBERON:8410002 name: small intestine lymphatic vessel def: "A lymphatic vessel that supplies the small intestine." [http://orcid.org/0000-0003-4183-8865] subset: location_grouping synonym: "lymphatic vessel of small intestine" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:8410003 name: ductal plate def: "In human, ductal plate is a double-layered cylindrical structure of bile duct epithelium that surrounds the portal ramifications by the eighth gestational week. After approximately the 12th gestational week, remodelling of ductal plate begins, and maturity is attained by the end of gestation or early postnatal period." [http://orcid.org/0000-0002-7073-9172, PMID:28515578] subset: added_for_HCA is_a: UBERON:0010000 ! multicellular anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002394 ! bile duct relationship: present_in_taxon NCBITaxon:40674 property_value: taxon_notes "Temporal stages still need to be fully researched across species." xsd:string [Term] id: UBERON:8410004 name: small intestine arteriole def: "Arteriole of villus of small intestine." [http://orcid.org/0000-0003-4183-8865] subset: location_grouping synonym: "arteriole of small intestine" EXACT [] synonym: "arteriole of villus of small intestine" EXACT [] synonym: "small intestine villus arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001213 ! intestinal villus [Term] id: UBERON:8410005 name: transitional glandular epithelium of anorectum def: "Glandular epithelium of the anal transition zone. The anal transition zone is defined loosely as the tissue interposed between the uninterrupted squamous epithelium of the anoderm and the uninterrupted mucosal epithelium of the anal canal in the anorectum." [http://orcid.org/0000-0003-3440-1876, PMID:8425694] subset: human_reference_atlas synonym: "anorectum transitional glandular epithelium" EXACT [] synonym: "glandular epithelium of anal transition zone" EXACT [] synonym: "glandular epithelium of the anal transition zone" EXACT [] is_a: UBERON:0006929 ! glandular columnar epithelium is_a: UBERON:0015716 ! anal canal epithelium relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410006 name: submucous nerve plexus of anorectum def: "Submucous nerve plexus that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] synonym: "anorectum submucous nerve plexus" EXACT [] is_a: UBERON:0005304 ! submucous nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum [Term] id: UBERON:8410007 name: myenteric nerve plexus of anorectum def: "Myenteric nerve plexus that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] synonym: "anorectum myenteric nerve plexus" EXACT [] is_a: UBERON:0002439 ! myenteric nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum [Term] id: UBERON:8410008 name: venule of anorectum def: "A venule that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] synonym: "anorectum venule" EXACT [] is_a: UBERON:0001979 ! venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum [Term] id: UBERON:8410009 name: arteriole of anorectum def: "An arteriole that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] synonym: "anorectum arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum [Term] id: UBERON:8410010 name: fimbria of fallopian tube def: "A fringe of tissue around the ostium of the fallopian tube, in the direction of the ovary." [WikipediaVersioned:Fallopian_tube&oldid=998395727] subset: added_for_HCA subset: human_reference_atlas synonym: "fimbria of uterine tube" EXACT [] synonym: "fimbriae of fallopian tube" EXACT OMO:0003004 [] synonym: "fimbriae of uterine tube" EXACT OMO:0003004 [] xref: FMA:18308 xref: http://orcid.org/0000-0001-7505-5418 is_a: UBERON:0013515 ! subdivision of oviduct relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0003889 ! fallopian tube relationship: present_in_taxon NCBITaxon:40674 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410011 name: myenteric nerve plexus of appendix def: "Myenteric nerve plexus that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "myenteric nerve plexus of appendix vermiformis" EXACT [] synonym: "myenteric nerve plexus of vermiform appendix" EXACT [] is_a: UBERON:0002439 ! myenteric nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410012 name: submucous nerve plexus of appendix def: "Submucous nerve plexus that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "submucous nerve plexus of appendix vermiformis" EXACT [] synonym: "submucous nerve plexus of vermiform appendix" EXACT [] is_a: UBERON:0005304 ! submucous nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410013 name: afferent lymphatic vessel valve def: "A valve in an afferent lymphatic vessel. It manages the flow of lymphatic fluid into the lymph node carrying immune cells and is essential for the correct flow of fluid through the lymphatic system." [http://orcid.org/0000-0003-4183-8865] synonym: "valve of afferent lymphatic vessel" EXACT [] is_a: UBERON:0034949 ! lymphatic valve relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0010396 ! afferent lymphatic vessel [Term] id: UBERON:8410014 name: efferent lymphatic vessel valve def: "A valve in an efferent lymphatic vessel. It manages the flow of lymphatic fluid out of the lymph node carrying immune cells and is essential for the correct flow of fluid through the lymphatic system." [http://orcid.org/0000-0003-4183-8865] synonym: "valve of efferent lymphatic vessel" EXACT [] is_a: UBERON:0034949 ! lymphatic valve relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0010397 ! efferent lymphatic vessel [Term] id: UBERON:8410015 name: arteriole of colon def: "An arteriole located in the colon." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] is_a: UBERON:0001980 ! arteriole relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:8410016 name: descending sigmoid junction def: "The anatomical junction between the descending colon and the sigmoid colon." [https://orcid.org/0000-0003-4183-8865, PMID:27233374] synonym: "descending-sigmoid colon junction" EXACT [] synonym: "descending-sigmoid junction" EXACT [] synonym: "sigmoid junction" BROAD [] is_a: UBERON:8410024 ! intestinal junction relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000168 ! proximal-distal subdivision of colon [Term] id: UBERON:8410017 name: left colic vein def: "A portal vein that drains the descending colon. It is a tributary of the inferior mesenteric vein, and follows the path of its corresponding artery, the left colic artery." [https://orcid.org/0000-0003-4183-8865, WikipediaVersioned:Left_colic_vein&oldid=964575339] subset: human_reference_atlas xref: FMA:15394 is_a: UBERON:0002017 ! portal vein relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410018 name: right colic vein def: "A portal vein that drains the ascending colon. It is a tributary of the superior mesenteric vein, and travels with its corresponding artery, the right colic artery." [https://orcid.org/0000-0003-4183-8865, WikipediaVersioned:Right_colic_vein&oldid=870898828] subset: human_reference_atlas xref: FMA:15407 is_a: UBERON:0002017 ! portal vein relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410019 name: jejuno-ileal junction def: "The area where the jejunum ends and the ileum part of the intestine begins. Although there is no clear distinct section, the ileum is narrower and has smaller villi than the jejunum." [DOI:10.1016/B978-1-4377-2206-2.00068-3, https://orcid.org/0000-0003-4183-8865, PMID:21802415] synonym: "jejunoileal junction" EXACT [] is_a: UBERON:8410024 ! intestinal junction relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:8410020 name: venule of appendix def: "A venule located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "venule of vermiform appendix" EXACT [] synonym: "vermiform appendix venule" EXACT [] is_a: UBERON:0001979 ! venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410021 name: inguinal region skin def: "The skin covering the inguinal region between the abdomen and the thigh on either side of the pubic bone." [http://orcid.org/0000-0001-7505-5418, PMID:32327715, PMID:468709, WikipediaVersioned:Groin&oldid=998393002] subset: added_for_HCA synonym: "groin skin" EXACT [] synonym: "inguinal skin" EXACT [] synonym: "skin of groin" EXACT [] synonym: "skin of inguinal region" EXACT [] synonym: "zone of skin of groin" EXACT [] synonym: "zone of skin of inguinal region" EXACT [] is_a: UBERON:0003836 ! abdominal segment skin relationship: part_of UBERON:0008337 ! inguinal part of abdomen [Term] id: UBERON:8410022 name: left colic artery def: "The first branch of the inferior mesenteric artery (IMA) is the left colic artery. The left colic artery supplies blood flow to the distal third of the transverse colon and the entirety of the descending colon. Once diverging from the IMA, the left colic artery runs anterior to the left ureter, left internal spermatic vessels (males), and psoas major before branching into its ascending and descending segments." [https://orcid.org/0000-0003-4183-8865, PMID:29489246] subset: human_reference_atlas xref: FMA:14826 is_a: UBERON:0001637 ! artery relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410023 name: right colic artery def: "The right colic artery may arise directly from the superior mesenteric artery (SMA) but often arises from a common trunk with the ileocolic artery or middle colic artery. It supplies the ascending colon." [https://orcid.org/0000-0003-4183-8865, ISBN:9780443103735] subset: human_reference_atlas xref: FMA:14811 is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410024 name: intestinal junction def: "An anatomical junction between two parts of the intestine." [https://orcid.org/0000-0002-7073-9172] synonym: "junction of intestine" EXACT [] is_a: UBERON:1100000 ! digestive tract junction relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:8410025 name: transition zone of prostate def: "The region of the prostate gland anterior to the central and peripheral zones, surrounding the proximal urethra. It is the zone of the human prostate gland that grows the most throughout life, and is responsible for benign prostatic hypertrophy." [https://orcid.org/0000-0002-7431-4139, PMID:30566875] subset: added_for_HCA synonym: "prostate transition zone" EXACT [] synonym: "transition zone of human prostate" NARROW [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:8410026 name: peripheral zone of prostate def: "The region of the prostate that is located posterior to the central and transition zones, surrounding the distal urethra. It is the zone of origin for the vast majority of human prostatic cancers." [https://orcid.org/0000-0002-7431-4139, PMID:30566875] subset: added_for_HCA synonym: "peripheral zone of human prostate" NARROW [] synonym: "prostate peripheral zone" EXACT [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:8410027 name: central zone of prostate def: "The region of the prostate gland that is located between the peripheral and transition zones, surrounding the ejaculatory ducts. It gives rise to a very small percentage of human prostate cancers, often aggressive and invading the seminal vesicles." [https://orcid.org/0000-0002-7431-4139, PMID:30566875] subset: added_for_HCA synonym: "central zone of human prostate" NARROW [] synonym: "prostate central zone" EXACT [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:8410028 name: arteriole of appendix def: "An arteriole located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "appendix vermiformis arteriole" EXACT [] synonym: "arteriole of appendix vermiformis" EXACT [] synonym: "arteriole of vermiform appendix" EXACT [] synonym: "vermiform appendix arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410029 name: lymphatic capillary of appendix def: "A lymphatic capillary that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "lymphatic capillary of appendix vermiformis" EXACT [] synonym: "lymphatic capillary of vermiform appendix" EXACT [] is_a: UBERON:0006842 ! lymphatic capillary is_a: UBERON:8410030 ! lymphatic vessel of appendix relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410030 name: lymphatic vessel of appendix def: "A lymphatic vessel located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "lymphatic vessel of appendix vermiformis" EXACT [] synonym: "lymphatic vessel of vermiform appendix" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410031 name: muscularis mucosae of appendix def: "A muscularis mucosa that is part of a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "muscularis mucosae of appendix vermiformis" EXACT [] synonym: "muscularis mucosae of vermiform appendix" EXACT [] is_a: UBERON:0001239 ! muscularis mucosae of large intestine relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410032 name: trabecular sinus of lymph node def: "The trabecular sinus is the lymph-filled space outside the trabeculae between lobules of the lymph node. This is a continuation of the subcapsular sinus which receives the afferent vessels and is present beneath the capsule. This space is traversed by both reticular fibers and cells in the lymph." [http://orcid.org/0000-0003-4183-8865, PMID:32491649, WikipediaVersioned:Lymph_node&oldid=1020495758] subset: human_reference_atlas synonym: "lymph node trabecular sinus" EXACT [] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410033 name: lymph node vein def: "A vein where lymph node venules condense and which exits at the lymph node hilum. It is also called hilar vein." [http://orcid.org/0000-0003-3440-1876, PMID:17067937, WikipediaVersioned:Lymph_node&oldid=1001655735#Structure] subset: human_reference_atlas synonym: "hilar vein of lymph node" EXACT [] synonym: "vein of lymph node" EXACT [] is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410034 name: lymph node artery def: "An artery that enters the lymph node at the hilum and branches into smaller arterioles." [http://orcid.org/0000-0003-3440-1876, PMID:17067937, WikipediaVersioned:Lymph_node&oldid=1001655735#Structure] subset: human_reference_atlas synonym: "artery of lymph node" EXACT [] synonym: "hilar artery of lymph node" EXACT [] is_a: UBERON:0001637 ! artery relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410035 name: medullary arteriole of lymph node def: "An arteriole that arises from the hilar artery of a lymph node and radiates centrifugally, branching in the medulla." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas synonym: "arteriole of medulla of lymph node" EXACT [] is_a: UBERON:8410042 ! arteriole of lymph node relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002007 ! medulla of lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410036 name: medullary venule of lymph node def: "Medullary venules are a continuation of high endothelial venules which condense repeatedly in the interfollicular cortex and peripheral deep cortical unit and then transition to medullary venules at the corticomedullary junction. The medullary venules condense and return centripetally to the hilar vein." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas synonym: "venule of medulla of lymph node" EXACT [] is_a: UBERON:8410041 ! venule of lymph node relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002007 ! medulla of lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410037 name: high endothelial venule def: "High endothelial venules are specialized blood vessels adapted for lymphocyte trafficking. They form a spatially organized network, which controls both the type of lymphocyte and the site of entry into lymphoid tissues. Uniquely, high endothelial venules express vascular addressins that regulate lymphocyte entry into lymphoid organs. They perform this function in all lymphoid organs except the spleen." [http://orcid.org/0000-0003-3440-1876, PMID:28217126] synonym: "HEV" BROAD OMO:0003000 [] xref: BTO:0004528 xref: NCIT:C32739 is_a: UBERON:0035428 ! postcapillary venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410038 name: high endothelial venule of lymph node def: "A high endothelial venule that is part of a of lymph node." [http://orcid.org/0000-0003-3440-1876, PMID:28217126] subset: human_reference_atlas synonym: "lymph node high endothelial venule" EXACT [] is_a: UBERON:8410037 ! high endothelial venule is_a: UBERON:8410041 ! venule of lymph node relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410039 name: high endothelial venule of appendix def: "A high endothelial venule that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876, PMID:28217126] synonym: "appendix high endothelial venule" EXACT [] synonym: "high endothelial venule of appendix vermiformis" EXACT [] synonym: "high endothelial venule of vermiform appendix" EXACT [] is_a: UBERON:8410020 ! venule of appendix is_a: UBERON:8410037 ! high endothelial venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410040 name: high endothelial venule of small intestine Peyer's patch def: "A high endothelial venule that is located in a Peyer's patch in the small intestine." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865, PMID:20800822, PMID:28217126] synonym: "high endothelial venule of Peyer's patch" BROAD [] synonym: "high endothelial venule of Peyer's patch of small intestine" EXACT [] is_a: UBERON:8410037 ! high endothelial venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0003454 ! small intestine Peyer's patch [Term] id: UBERON:8410041 name: venule of lymph node def: "A venule that is part of a lymph node." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas synonym: "lymph node venule" EXACT [] is_a: UBERON:0001979 ! venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410042 name: arteriole of lymph node def: "An arteriole that is part of a lymph node." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas synonym: "lymph node arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410043 name: bronchus submucosal gland def: "A submucosal gland located in a bronchus." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] subset: human_reference_atlas synonym: "airway submucosal gland" BROAD [] synonym: "bronchial submucosal gland" EXACT [] synonym: "submucosal bronchial gland" EXACT [] synonym: "submucosal bronchus gland" EXACT [] is_a: UBERON:8410077 ! airway submucosal gland relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002185 ! bronchus relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410044 name: vein of appendix def: "A vein that is part of a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "vein of appendix vermiformis" EXACT [] synonym: "vein of vermiform appendix" EXACT [] is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410045 name: artery of appendix def: "An artery that is part of a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "artery of appendix vermiformis" EXACT [] synonym: "artery of vermiform appendix" EXACT [] is_a: UBERON:0001637 ! artery relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410046 name: appendix smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a vermiform appendix smooth muscle." [http://orcid.org/0000-0003-3440-1876] synonym: "smooth muscle circular layer of appendix" EXACT [] synonym: "smooth muscle circular layer of appendix vermiformis" EXACT [] synonym: "smooth muscle circular layer of vermiform appendix" EXACT [] is_a: UBERON:0012368 ! circular muscle layer of muscular coat relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410047 name: appendix smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a vermiform appendix smooth muscle." [http://orcid.org/0000-0003-3440-1876] synonym: "smooth muscle longitudinal layer of appendix" EXACT [] synonym: "smooth muscle longitudinal layer of appendix vermiformis" EXACT [] synonym: "smooth muscle longitudinal layer of vermiform appendix" EXACT [] is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001154 ! vermiform appendix [Term] id: UBERON:8410048 name: venule of colon def: "A venule located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] is_a: UBERON:0001979 ! venule relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:8410049 name: serosal nerve fiber of appendix def: "A nerve fiber that is located in the serosa of vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "nerve fiber of serosa of appendix" EXACT [] synonym: "nerve fibre of serosa of appendix" EXACT [] synonym: "serosal nerve fiber of appendix vermiformis" EXACT [] synonym: "serosal nerve fiber of vermiform appendix" EXACT [] synonym: "serosal nerve fibre of appendix" EXACT [] synonym: "serosal nerve fibre of appendix vermiformis" EXACT [] synonym: "serosal nerve fibre of vermiform appendix" EXACT [] is_a: UBERON:0006134 ! nerve fiber relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0012498 ! serosa of appendix [Term] id: UBERON:8410050 name: anorectum def: "A subdivision of the digestive tract in humans that includes the rectum, the anal canal and the anus." [DOI:10.1007/978-3-319-26938-2_8, DOI:10.1148/rg.2015150037, http://orcid.org/0000-0002-6826-8770, http://orcid.org/0000-0003-3440-1876, PMID:29742860] synonym: "anorectal canal" NARROW [] is_a: UBERON:0004921 ! subdivision of digestive tract relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000059 ! large intestine relationship: present_in_taxon NCBITaxon:9606 property_value: editor_note "The anatomy, pathology and medical community considers the anus to be part of the large intestine, and supports the use of 'anorectum' to include rectum, anal canal and anus. Although a few resources seem to only include the distal part of the rectum in 'anorectum', this UBERON grouping term is meant to refer more broadly to the whole of rectum." xsd:string property_value: has_relational_adjective "anorectal" xsd:string [Term] id: UBERON:8410051 name: lymphatic vessel of colon def: "A lymphatic vessel located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] is_a: UBERON:0001473 ! lymphatic vessel relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:8410052 name: lymph node germinal center light zone def: "Lymph node germinal centers contain two microenvironments: the light zone and the dark zone. The light zone is sparsely populated with B cells and includes additional cell types such as follicular dendritic cells, lymph node tingible macrophages and T follicular helper cells." [http://orcid.org/0000-0003-4183-8865, PMID:25656706, PMID:8011279] subset: human_reference_atlas synonym: "germinal center light zone" BROAD [] synonym: "light zone of germinal center" BROAD [] synonym: "light zone of lymph node germinal center" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0009039 ! lymph node germinal center relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410053 name: lymph node germinal center dark zone def: "Lymph node germinal centers contain two microenvironments: the light zone and the dark zone. The dark zone is densely populated with B cell blasts and reticular cells." [http://orcid.org/0000-0003-4183-8865, PMID:25656706, PMID:8011279] subset: human_reference_atlas synonym: "dark zone of germinal center" BROAD [] synonym: "dark zone of lymph node germinal center" EXACT [] synonym: "germinal center dark zone" BROAD [] is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0009039 ! lymph node germinal center relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410054 name: lymphatic capillary of colon def: "A lymphatic capillary located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] is_a: UBERON:0006842 ! lymphatic capillary is_a: UBERON:8410051 ! lymphatic vessel of colon relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410055 name: lymphatic capillary of anorectum def: "A lymphatic capillary located in the anorectum." [https://orcid.org/0000-0003-3440-1876] is_a: UBERON:0006842 ! lymphatic capillary relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum [Term] id: UBERON:8410056 name: capillary of anorectum def: "A capillary that is part of the anorectum." [http://orcid.org/0000-0003-3440-1876] synonym: "blood vessel capillary of anorectum" EXACT [] is_a: UBERON:0001982 ! capillary relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum [Term] id: UBERON:8410057 name: capillary of colon def: "A capillary that is part of the colon." [http://orcid.org/0000-0003-3440-1876] synonym: "blood vessel capillary of colon" EXACT [] is_a: UBERON:0001982 ! capillary relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:8410058 name: myenteric nerve plexus of colon def: "Myenteric nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0002439 ! myenteric nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410059 name: submucous nerve plexus of colon def: "Submucous nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0005304 ! submucous nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410060 name: colon smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a colon smooth muscle." [http://orcid.org/0000-0003-3440-1876] synonym: "smooth muscle circular layer of colon" EXACT [] is_a: UBERON:0012398 ! large intestine smooth muscle circular layer relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:8410061 name: colon smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a colon smooth muscle." [http://orcid.org/0000-0003-3440-1876] synonym: "smooth muscle longitudinal layer of colon" EXACT [] is_a: UBERON:0012399 ! large intestine smooth muscle longitudinal layer relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:8410062 name: parasympathetic cholinergic nerve def: "A parasympathetic nerve that releases acetylcholine." [PMID:24676230] subset: human_reference_atlas is_a: UBERON:0004293 ! parasympathetic nerve relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2104" xsd:string [Term] id: UBERON:8410063 name: myenteric nerve plexus of small intestine def: "Myenteric nerve plexus that is part of the small intestine." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0002439 ! myenteric nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410064 name: submucous nerve plexus of small intestine def: "Submucous nerve plexus that is located in the small intestine." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0005304 ! submucous nerve plexus relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410065 name: lymph node follicle marginal zone def: "Histologically, the marginal zone pattern of the lymph node is characterized by lymphoid follicles with three distinct layers. The inner layer is composed of follicular center zones, the middle layer of darkly stained mantle zones, and the outer layer of marginal zones. However, the marginal zone pattern is rarely seen in reactive lymph nodes except for mesenteric lymph nodes. Lymph node marginal zones are populated by marginal zone B cells which express CD19 and CD20 and have the phenotypic features of memory B cells." [http://orcid.org/0000-0003-4183-8865, PMID:11026094, PMID:12076268] synonym: "lymph node marginal zone" BROAD [] synonym: "marginal zone of lymph node" BROAD [] synonym: "marginal zone of lymph node follicle" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:8410066 name: lymph node paracortex def: "The lymph node paracortex is the middle layer of the lymph node and is mostly populated by T cells and dendritic cells. The paracortex also contains specialised blood vessels called high endothelial venules which allow lymphocytes to enter the node." [http://orcid.org/0000-0001-9990-8331, http://orcid.org/0000-0003-4183-8865, https://www.immunology.org/public-information/bitesized-immunology/organs-and-tissues/lymph-node] subset: human_reference_atlas is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0010417 ! lymph node T cell domain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410067 name: lymph node interfollicular cortex def: "Follicules in the lymph node are surrounded and separated by the interfollicular cortex. Together with the lymph node follicle, the interfollicular cortex of the lymph node lobule make up the superficial cortex of the lymph node. Capillaries empty into the high endothelial venules located in the interfollicular cortex. The interfollicular cortex also serves as transit corriders for lymphocytes migrating between the B and T cell areas." [http://orcid.org/0000-0001-9990-8331, http://orcid.org/0000-0003-4183-8865, PMID:17067937] subset: human_reference_atlas synonym: "interfollicular cortex of lymph node" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0010417 ! lymph node T cell domain relationship: present_in_taxon NCBITaxon:9606 [Term] id: UBERON:8410068 name: capillary of small intestine def: "A capillary that is part of a small intestine." [http://orcid.org/0000-0003-3440-1876] subset: location_grouping synonym: "blood vessel capillary of small intestine" EXACT [] synonym: "small intestine capillary" EXACT [] is_a: UBERON:0001982 ! capillary relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002108 ! small intestine property_value: dcterms-date "2021-12-21T15:14:31Z" xsd:dateTime [Term] id: UBERON:8410069 name: lymphoid nodule def: "Lymphoid tissue found in some birds and similar, but not identical, to mammalian lymph nodes." [http://orcid.org/0000-0001-9990-8331, http://orcid.org/0000-0002-1572-1316, http://orcid.org/0000-0002-6601-2165, PMID:16889640, PMID:22483556, PMID:23640588, PMID:552577, PMID:916458] synonym: "avian lymph node" RELATED [] synonym: "avian lymphoid nodule" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 property_value: dcterms-date "2022-01-24T16:47:47Z" xsd:dateTime [Term] id: UBERON:8410070 name: levator costarum def: "A chest muscle with a role in forceful inspiration. In human, there are twelve levatores costarum on either side of the chest; they are small tendinous and fleshy bundles arising from the ends of the transverse processes of the seventh cervical and upper eleven thoracic vertebrae. They pass obliquely downward and laterally, like the fibers of the intercostales externi, and each is inserted into the outer surface of the rib immediately below the vertebra from which it takes origin, between the tubercle and the angle (levatores costarum breves). Each of the four lower muscles divides into two fasciculi, one of which is inserted as above described; the other passes down to the second rib below its origin (levatores costarum longi)." [WikipediaVersioned:Levatores_costarum_muscles&oldid=876138804] synonym: "levator costarum muscle" EXACT [] synonym: "levatores costarum" EXACT [] synonym: "levatores costarum muscles" EXACT [] synonym: "musculi levatores costarum" EXACT OMO:0003011 [] xref: FMA:71312 is_a: UBERON:0002426 ! chest muscle relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-01-27T10:41:44Z" xsd:dateTime [Term] id: UBERON:8410071 name: subcapsular sinus ceiling def: "The section of the lymph node capsule that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [https://orcid.org/0000-0001-7655-4833, PMID:31402260] subset: human_reference_atlas synonym: "ceiling of subcapsular sinus of lymph node" EXACT [] synonym: "floor of capsule of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node ceiling" EXACT [] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002194 ! capsule of lymph node relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-02-22T17:04:49Z" xsd:dateTime [Term] id: UBERON:8410072 name: subcapsular sinus floor def: "The section of the lymph node cortex that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [https://orcid.org/0000-0001-7655-4833, PMID:31402260] subset: human_reference_atlas synonym: "ceiling of cortex of lymph node" EXACT [] synonym: "floor of subcapsular sinus of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node floor" EXACT [] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002006 ! cortex of lymph node relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-02-22T17:16:40Z" xsd:dateTime [Term] id: UBERON:8410073 name: medullary region of kidney def: "A part of the kidney that comprises kidney pyramids and renal columns." [http://orcid.org/0000-0002-7073-9172] comment: Note that 'medullary region of kidney' is not synonymous with 'renal medulla'. The former covers kidney pyramids and renal columns, which are histologically different, while the latter is composed of kidney pyramids only. synonym: "kidney medullary region" EXACT [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002113 ! kidney property_value: dcterms-date "2022-02-03T14:18:40Z" xsd:dateTime property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2126" xsd:string created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410074 name: lymph node paracortical sinus def: "A lymph node sinus intimately associated with paracortical cords that originate in the interfollicular cortex and extend into the medullary cords." [https://orcid.org/0000-0001-7655-4833, PMID:17067937, PMID:9176696] subset: human_reference_atlas synonym: "cortical sinus" RELATED [] synonym: "lymphatic labyrinth" RELATED [] synonym: "paracortical sinus" BROAD [] synonym: "peripheral sinus" RELATED [] is_a: UBERON:0004111 ! anatomical conduit relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410066 ! lymph node paracortex relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-02-24T11:30:26Z" xsd:dateTime [Term] id: UBERON:8410075 name: lymph node paracortical cord def: "Lymph node paracortical parenchyma containing dense networks of T cells, B cells, fibroblastic reticular cells, and dendritic cells." [https://orcid.org/0000-0001-7655-4833, PMID:17067937, PMID:49306] subset: human_reference_atlas synonym: "paracortical cord" BROAD [] is_a: UBERON:0000353 ! parenchyma relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410066 ! lymph node paracortex relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-02-24T11:40:24Z" xsd:dateTime [Term] id: UBERON:8410076 name: glomus coccygeum def: "A glomus-like dermal microanatomical structure found in human and placed in front of, or immediately below, the tip of the coccyx. Each glomus consists of one or more arterial segments that branch into a number of glomic arterioles surrounded by rows of round, uniform, epithelioid contractile cells, that drain into a collecting venous plexus." [https://orcid.org/0000-0002-1572-1316, PMID:28545163, PMID:30799440] synonym: "coccygeal body" EXACT [FMA:15649] synonym: "coccygeal gland" EXACT [WikipediaVersioned:Coccygeal_glomus&oldid=1019065130] synonym: "coccygeal glomus" EXACT [FMA:15649] synonym: "gland of Luschka" EXACT [FMA:15649] synonym: "glands of Luschka" EXACT [] synonym: "glomus body" EXACT [PMID:30799440] synonym: "Luschka's gland" EXACT [WikipediaVersioned:Coccygeal_glomus&oldid=1019065130] is_a: UBERON:0010000 ! multicellular anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 property_value: dcterms-date "2022-02-24T14:12:33Z" xsd:dateTime [Term] id: UBERON:8410077 name: airway submucosal gland def: "A submucosal gland found in a respiratory tract." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] synonym: "respiratory tract submucosal gland" EXACT [] synonym: "submucosal gland of respiratory tract" EXACT [] xref: EFO:0010666 is_a: UBERON:0011148 ! submucosal gland is_a: UBERON:0036225 ! respiratory system gland relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000065 ! respiratory tract property_value: dcterms-date "2022-03-24T14:21:59Z" xsd:dateTime [Term] id: UBERON:8410078 name: right lymphatic duct def: "A great lymphatic vessel that empties lymph into one of the subclavian veins. In humans, there are two lymph ducts in the body: the right lymphatic duct and the thoracic duct. The right lymphatic duct drains lymph from the right upper limb, right side of thorax and right halves of head and neck. The thoracic duct drains lymph into the circulatory system at the left brachiocephalic vein between the left subclavian and left internal jugular veins." [Wikipedia:Lymph_duct] comment: This term ('right lymphatic duct') would not need a 'left' counterpart; the other great lymph duct in the human body is represented by UBERON:0001631 'thoracic duct'. synonym: "ductus lymphaticus dexter" EXACT OMO:0003011 [] xref: FMA:5832 is_a: UBERON:0001473 ! lymphatic vessel relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-03-25T10:41:22Z" xsd:dateTime [Term] id: UBERON:8410079 name: red bone marrow of iliac crest def: "Red bone marrow located in an iliac crest." [http://orcid.org/0000-0001-7655-4833, https://en.wikipedia.org/wiki/Iliac_crest] comment: The iliac crest has a large amount of red bone marrow, and thus it is the site of bone marrow harvests (from both sides) to collect the stem cells used in bone marrow transplantation. synonym: "iliac crest red bone marrow" EXACT [] is_a: UBERON:0000361 ! red bone marrow relationship: part_of UBERON:0014437 ! iliac crest created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410080 name: red bone marrow of sternum def: "Red bone marrow located in the sternum." [http://orcid.org/0000-0001-7655-4833] synonym: "sternum red bone marrow" EXACT [] is_a: UBERON:0000361 ! red bone marrow relationship: part_of UBERON:0000975 ! sternum created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410081 name: blood microvessel def: "Any of the smallest blood vessels where blood circulates within organ tissues. Microvessels include terminal arterioles, metarterioles, capillaries, and venules (but exclude lymphatic capillaries). Arterioles carry oxygenated blood to the capillaries, and blood flows out of the capillaries through venules into veins." [http://orcid.org/0000-0002-7073-9172, Wikipedia:Microcirculation] synonym: "microvasculature" BROAD [] synonym: "microvessel" BROAD [] is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0010523 ! microcirculatory vessel property_value: has_relational_adjective "microvascular" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2186" xsd:string created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8420000 name: hair of scalp def: "Hair that grows on the scalp." [PMID:3126903] synonym: "hair" BROAD [PMID:30783333] is_a: UBERON:0016446 ! hair of head relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 relationship: part_of UBERON:0000403 ! scalp [Term] id: UBERON:8420001 name: ethmoidal vein def: "A vein that accompanies an ethmoidal artery and drains the ethmoidal cells." [https://www.ncbi.nlm.nih.gov/books/NBK499826/, wikipedia:Ethmoidal_veins] xref: FMA:51770 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 property_value: dcterms-date "2024-08-28T09:55:00Z" xsd:string [Term] id: UBERON:8420002 name: anterior ethmoidal vein def: "An ethmoidal vein that accompanies an anterior ethmoidal artery. The anterior ethmoidal vein normally drains into the inferior root of the superior ophthalmic vein." [https://doi.org/10.1007/978-3-031-40697-3_23, https://doi.org/10.1167/iovs.02-0865] xref: FMA:51771 is_a: UBERON:8420001 ! ethmoidal vein relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 property_value: dcterms-date "2024-08-28T09:55:00Z" xsd:string [Term] id: UBERON:8420003 name: posterior ethmoidal vein def: "An ethmoidal vein that accompanies a posterior ethmoidal artery. The posterior ethmoidal vein often drains into a venous network under the orbital roof." [https://doi.org/10.1007/978-3-031-40697-3_23, https://doi.org/10.1167/iovs.02-0865] xref: FMA:51772 is_a: UBERON:8420001 ! ethmoidal vein relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 property_value: dcterms-date "2024-08-28T09:55:00Z" xsd:string [Term] id: UBERON:8440000 name: cortical layer II/III def: "A laminar subdivision of the neocortex that is comprised of a part of layer II and a part of layer III." [PMID:34616063] comment: In rodents, layer II/III refers to a mereological sum of layers II and III as there is no clear architectonic boundary between them. {xref="PMID:29311847"} synonym: "cerebral cortex layer 2/3" EXACT [] synonym: "neocortex layer 2/3" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex [Term] id: UBERON:8440001 name: cortical layer IV/V def: "A laminar subdivision of the neocortex that is comprised of a part of layer IV and a part of layer V." [PMID:34616063] synonym: "cerebral cortex layer 4/5" EXACT [] synonym: "neocortex layer 4/5" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex [Term] id: UBERON:8440002 name: cortical layer V/VI def: "A laminar subdivision of the neocortex that is comprised of a part of layer V and a part of layer VI." [PMID:34616063] synonym: "cerebral cortex layer 5/6" EXACT [] synonym: "neocortex layer 5/6" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex [Term] id: UBERON:8440003 name: cortical layer VIb def: "The deepest layer of the neocortex. While layer 6b is considered part of layer 6, it is distinct morphologically, genetically, and developmentally from the rest of layer 6. Neurons in L6b project to cortical targets and higher-order thalamus and develop from a precursor population that arises from the subplate." [PMID:32160552] synonym: "cerebral cortex layer 6b" EXACT [] synonym: "neocortex layer 6b" EXACT [] is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0004035 ! cortical subplate relationship: part_of UBERON:0005395 ! cortical layer VI [Term] id: UBERON:8440004 name: laminar subdivision of the cortex def: "One or a subset of adjacent layers of the neocortex." [ISBN-10:0-87893-742-0] is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:8440005 name: rostral periventricular region of the third ventricle def: "A functional anatomical construct containing the key estrogen-regulated inputs to gonadotropin-releasing hormone expressing (GnRH) neurons necessary for estrogen positive feedback. The rostral periventricular region of the third ventricle contains a population of neurons, scattered through the nuclei of the anteroventral periventricular (AVPV), periventricular preoptic (PVpo), and median preoptic (MEPO), that project directly to GnRH neurons and express ER-alpha." [PMID:17604108] comment: In rats and mice, the anteroventral periventricular nucleus plus the periventricular nucleus make up the rostral periventricular region of the third ventricle (RP3V). Overlaps is used (instead of has_part that this comment suggests should be used) as PMID:17604108 suggest that the region refers to cells that are scattered in the area. {xref="WikipediaVersioned:Anteroventral_periventricular_nucleus&oldid=966137187"} synonym: "RP3V" EXACT [PMID:17604108] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0006569 ! diencephalic nucleus [Term] id: UBERON:8440007 name: periventricular hypothalamic nucleus, anterior part def: "The anterior part of the periventricular hypothalamic nucleus." [MBA:30] comment: This seperation is based on the Allen mouse brain atlas. synonym: "PVa" EXACT [MBA:30] xref: MBA:30 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:8440008 ! periventricular hypothalamic nucleus, intermediate part relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus [Term] id: UBERON:8440008 name: periventricular hypothalamic nucleus, intermediate part def: "The intermediate part of the periventricular hypothalamic nucleus." [MBA:118] comment: This seperation is based on the Allen mouse brain atlas. synonym: "PVi" EXACT [MBA:118] xref: MBA:118 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: mutually_spatially_disjoint_with UBERON:8440007 ! periventricular hypothalamic nucleus, anterior part relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus [Term] id: UBERON:8440010 name: Brodmann (1909) area 17 def: "A subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]." [BrainInfo:2102] comment: This term was split out from primary visual cortex as many of the axioms and annotations were specific to primates or humans. synonym: "area 17 of Brodmann" RELATED [Wikipedia:Visual_cortex] synonym: "area 17 of Brodmann-1909" EXACT [BIRNLEX:1748] synonym: "area striata" RELATED [] synonym: "B09-17" BROAD OMO:0003000 [BIRNLEX:1748, NIFSTD:SumsDB_abbrevSource] synonym: "b09-17" EXACT [BIRNLEX:1748] synonym: "BA17" EXACT OMO:0003000 [] synonym: "BA17" RELATED OMO:0003000 [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" EXACT [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" RELATED [Wikipedia:Visual_cortex] synonym: "Brodmann area 17, striate" EXACT [BIRNLEX:1748] synonym: "calcarine cortex" RELATED [BrainInfo:2102] synonym: "human primary visual cortex" RELATED [] synonym: "nerve X" RELATED [NeuroNames:702] synonym: "occipital visual neocortex" RELATED [GEO:GSM336648] synonym: "primary visual area" RELATED [BAMS:VISp] synonym: "primate striate cortex" EXACT [FMA:236871, Wikipedia:Visual_cortex] synonym: "striate area" RELATED [BAMS:17] synonym: "V1" RELATED [Wikipedia:Visual_cortex] synonym: "visual area one" RELATED [Wikipedia:Visual_cortex] synonym: "visual area V1" RELATED [BTO:0004703] synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: BIRNLEX:1748 xref: BM:Tel-Cx-V1 xref: PBA:10026 xref: SCTID:384772005 xref: UMLS:C0038446 {source="ncithesaurus:Primary_Visual_Cortex"} xref: UMLS:C1272535 {source="BIRNLEX:1748"} is_a: UBERON:0002436 ! primary visual cortex is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png" xsd:anyURI [Term] id: UBERON:8440011 name: cortical visual area def: "The part of the cortex that is responsible for processing visual information." [https://orcid.org/0000-0001-7258-9596] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440012 name: cerebral nuclei def: "One of three components of the cerebrum that is a composite structure of the endbrain defined on the basis of origin from the ventricular ridge of the embryonic Encephalon. It consists of the extended striatum and the extended pallidum." [neuronames:2677] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to collection of basal ganglia) synonym: "CNU" EXACT [MBA:623] xref: BTO:0006534 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10331 xref: HBA:4275 xref: MBA:623 xref: PBA:128012596 is_a: UBERON:0009663 ! telencephalic nucleus relationship: mutually_spatially_disjoint_with UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440013 name: fasciola cinerea def: "A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus. The FC exhibits clear anatomical borders with the distalmost region of the CA1." [https://medical-dictionary.thefreedictionary.com/fasciola+cinerea, PMID:34999186] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to fasciolar gyrus) synonym: "FC" EXACT [MBA:982] xref: DMBA:112892265 xref: MBA:982 is_a: UBERON:0000064 ! organ part relationship: mutually_spatially_disjoint_with UBERON:0003881 ! CA1 field of hippocampus relationship: part_of UBERON:0002421 ! hippocampal formation [Term] id: UBERON:8440014 name: ventrolateral preoptic nucleus def: "A small cluster of neurons situated in the anterior hypothalamus, sitting just above and to the side of the optic chiasm in the brain of humans and other animals." [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to pars postrema of ventral lateral nucleus) synonym: "intermediate nucleus of the preoptic area (IPA)" EXACT [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] synonym: "VLPO" EXACT [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] xref: DMBA:15612 xref: MBA:689 is_a: UBERON:0006568 ! hypothalamic nucleus [Term] id: UBERON:8440015 name: noradrenergic cell groups def: "Collections of neurons in the central nervous system that have been demonstrated by histochemical fluorescence to contain the neurotransmitter norepinephrine (noradrenalin)." [WikipediaVersioned:Noradrenergic_cell_groups&oldid=965992184] is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:8440016 name: noradrenergic cell group A1 def: "A group of cells in the vicinity of the lateral reticular nucleus of the medullary reticular formation that label for norepinephrine in primates." [WikipediaVersioned:Noradrenergic_cell_group_A1&oldid=903443213] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002559 ! medullary reticular formation [Term] id: UBERON:8440017 name: noradrenergiccell group A2 def: "A group of cells in the vicinity of the dorsal motor nucleus of the vagus nerve in the medulla that label for norepinephrine in primates and rodents." [WikipediaVersioned:Noradrenergic_cell_group_A2&oldid=870891895] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:8440018 name: noradrenergic cell group A4 def: "A group of cells exhibiting noradrenergic fluorescence that, in the rat, are located in the Tegmen ventriculi quarti (roof of the fourth ventricle) ventral to the cerebellar nuclei, and in the macaque, are found at the edge of the lateral recess of the fourth ventricle caudally, extending to beneath the floor of the ventricle where they merge with the noradrenergic group A6, the locus ceruleus." [WikipediaVersioned:Noradrenergic_cell_group_A4&oldid=773500348] xref: DMBA:16937 is_a: UBERON:8440015 ! noradrenergic cell groups [Term] id: UBERON:8440019 name: noradrenergic cell group A5 def: "A group of cells in the vicinity of the superior olivary complex in the pontine tegmentum that label for norepinephine in primates, rodents, and other mammals." [WikipediaVersioned:Noradrenergic_cell_group_A5&oldid=1081186383] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:8440021 name: noradrenergic cell group A7 def: "A group of cells fluorescent for norepinephrine that is located in the pontine reticular formation ventral to the superior cerebellar peduncle of the pons in rodents and in primates." [WikipediaVersioned:Noradrenergic_cell_group_A7&oldid=870891935] xref: DMBA:17052 is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002573 ! pontine reticular formation [Term] id: UBERON:8440022 name: noradrenergic cell group A6sc def: "A group of cells fluorescent for norepinephrine that are scattered in the nucleus subceruleus of the macaque." [WikipediaVersioned:Noradrenergic_cell_group_A6sc&oldid=773500411] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002587 ! nucleus subceruleus [Term] id: UBERON:8440023 name: noradrenergic cell group Acg def: "A group of cells fluorescent for norepinephrine that are located in the central gray of the midbrain at the level of the trochlear nucleus in the squirrel monkey (Saimiri) and to a lesser degree in the macaque." [WikipediaVersioned:Noradrenergic_cell_group_Acg&oldid=981960786] is_a: UBERON:8440015 ! noradrenergic cell groups [Term] id: UBERON:8440024 name: visceral area def: "A cortical area between the agranular insular cortex and the supplemental somatosensory area in rats and mice. The VISC is the architectonically equivalent structure granular insula in humans." [neuronames:1192&questID=2709] synonym: "VISC" EXACT [MBA:677] xref: MBA:677 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440025 name: parapyramidal nucleus def: "A small group of cells located lateral to the pyramid of the medulla in the rat and the mouse that functionally it belongs to the reticular formation of the subcortical motor system." [neuronames:1771] synonym: "PPY" EXACT [MBA:1069] xref: MBA:1069 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:8440026 name: parapyramidal nucleus, deep part def: "The part of the parapyramidal nucleus that is closely adjacent to the inner surface of the pyramidal tract." [neuronames:3451&questID=1771] synonym: "PPYd" EXACT [MBA:185] xref: MBA:185 is_a: UBERON:8440025 ! parapyramidal nucleus [Term] id: UBERON:8440027 name: parapyramidal nucleus, superficial part def: "The part of the parapyramidal nucleus that is located on the ventral surface of the medulla lateral to the pyramidal tract." [neuronames:3452&questID=1771] synonym: "PPYs" EXACT [MBA:193] xref: MBA:193 is_a: UBERON:8440025 ! parapyramidal nucleus [Term] id: UBERON:8440028 name: Perihypoglossal nuclei def: "A group of neurons in the floor of the fourth ventricle, in close proximity to the nucleus of the hypoglossal nerve in the gray substance of the medulla oblongata, all of which contain cells with characteristics suggestive of reticular connections." [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "nuclei perihypoglossales" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal nuclear complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "PHY" EXACT OMO:0003000 [MBA:154] synonym: "satellite nuclei" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] xref: MBA:154 is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:8440029 name: rubroreticular tract def: "Nerve fibers that originate in the magnocellular red nucleus, cross to the other side of the midbrain, and descend in the lateral part of the brainstem tegmentum in the midbrain, and travel through the lateral funiculus of the spinal cord, coursing adjacent to the lateral corticospinal tract." [WikipediaVersioned:Rubrospinal_tract&oldid=1002226835] xref: MBA:221 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:8440030 name: striatum-like amygdalar nuclei def: "A part of the striatum which is primarilly composed of amygdalar areas. The sAMY is composed of the anterior amygdalar area, central amygdalar nucleus, intercalated amygdalar nucleus, medial amygdalar nucleus, and the bed nucleus of the accessory olfactory tract." [MBA:278] synonym: "sAMY" EXACT [MBA:278] xref: MBA:278 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:8440031 name: medial corticohypothalmic tract def: "The main route taken by fibers from the ventral subiculum to the hypothalamus, where they innervate the medial preoptic area, âshellâ of the ventromedial nucleus, dorsomedial nucleus, ventral premammillary nucleus, and cell-poor zone around the medial mammillary nucleus." [PMID:1430328] synonym: "mct" EXACT [MBA:428] xref: MBA:428 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:8440032 name: prelimbic area def: "A region in the medial prefrontal cortex that is dorsal to the infralimbic area important in expression of conditioned reward and fear behaviour." [PMID:30850668] synonym: "PL" EXACT [MBA:972] synonym: "prelimbic cortex" EXACT [PMID:30639183] synonym: "PrL" EXACT [PMID:30639183] xref: MBA:972 is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:8440033 ! infralimbic area relationship: part_of UBERON:0000451 ! prefrontal cortex relationship: present_in_taxon NCBITaxon:9989 [Term] id: UBERON:8440033 name: infralimbic area def: "A region in the medial prefrontal cortex that is ventral to the prelimbic area important in supression of conditioned reward and fear behaviour." [PMID:30850668] synonym: "IL (brain)" EXACT [PMID:30639183] synonym: "ILA" EXACT [MBA:44] synonym: "infralimbic cortex" EXACT [PMID:30639183] xref: MBA:44 is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:8440032 ! prelimbic area relationship: part_of UBERON:0000451 ! prefrontal cortex relationship: present_in_taxon NCBITaxon:9989 [Term] id: UBERON:8440034 name: bulbocerebellar tract def: "A subdivision of inferior cerebellar peduncle that connects the medulla to the cerebellum." [MBA:490] synonym: "bct" EXACT [MBA:490] xref: MBA:490 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:8440035 name: sublaterodorsal nucleus def: "A region in the dorsal pons that plays a central role in inducing motor suppression during REM sleep." [PMID:31679942] synonym: "SLD" EXACT [MBA:358] synonym: "sublaterodorsal tegmental nucleus" EXACT [] xref: MBA:358 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:8440036 name: supratrigeminal nucleus def: "A premotoneuron pool in the trigeminal reflex arc that is a key structure of jaw movement control." [PMID:26987956] synonym: "SUT" EXACT [MBA:534] synonym: "Vsup" EXACT [PMID:26987956] xref: DMBA:16977 xref: MBA:534 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:8440037 name: accessory facial motor nucleus def: "A small cluster of neurons dorsal to the facial motor nucleus in the pontine tegmentum." [WikipediaVersioned:Accessory_facial_motor_nucleus&oldid=1046234765] synonym: "ACVII" EXACT [MBA:576] xref: MBA:576 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:8440038 name: efferent vestibular nucleus def: "A small region of neurons in the brainstem, dorsolateral to the genu of facial nerve, that have efferents to the vestibular periphery." [PMID:26422206] synonym: "EV" EXACT [MBA:640] xref: MBA:640 is_a: UBERON:0006331 ! brainstem nucleus [Term] id: UBERON:8440039 name: piriform-amygdalar area def: "The cortical region between the cortical amygdalar area and the piriform area." [MBA:788] comment: In the human and macaque, the piriform-amygdalar area is not distinguished from the postpiriform transition area. {xref="neuronames:1776"} synonym: "PAA (brain)" EXACT [MBA:788] xref: MBA:788 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440040 name: dorsal peduncular area def: "A cytoarchitectonic area on the medial surface of the cerebral hemisphere rostral to the septum, ventral to the infralimbic area and dorsal to the tenia tecta in the mouse and rat." [neuronames:1776] comment: Some authors regard it not as a separate structure but as the ventral part of the infralimbic area. {xref="neuronames:1776"} synonym: "DP" EXACT [MBA:814] xref: MBA:814 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440041 name: tuberal nucleus (sensu Rodentia) def: "A hypothalamic region in rodents that is homologous to the lateral tuberal nucleus in humans and higher primates and is involved in energy homeostasis." [PMID:29976812, PMID:29976824] comment: While lateral tuberal nucleus is often used interchangeably with tuberal nucleus in rodents, lateral tuberal nucleus is specific to humans and higher primates. In some cases, lateral tuberal nucleus is thought to be part of the tuberal nucleus in rodents, and could possibly be homologous to human tuberal region instead. {xref="PMID:29976824", xref="neuronames:1890", xref="PMID:1362279"} synonym: "lateral tuberal nucleus (sensu Rodentia)" BROAD [neuronames:1890] synonym: "lateral tuberal nucleus (sensu Rodentia)" EXACT [PMID:29976812] xref: DMBA:16271 xref: MBA:614 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 property_value: curator_notes "Lateral tuberal nucleus is listed as both an exact synonym and related synonym as the term has been used in both ways. See https://github.com/obophenotype/uberon/issues/2439 for more details. No homology links has been made as this is unclear from the literature." xsd:string [Term] id: UBERON:8440042 name: nucleus lateralis tuberis system (sensu Teleostei) def: "A prominent nucleus located in the ventral tuberal area of Teleostei that is anatomically homologous to the hypothalamic arcuate (infundibular)-median eminence (ME) system of tetrpods." [DOI:10.1016/0016-6480(71)90165-1, PMID:25205931] comment: This term is used specifically for fish (or Teleostei in general) as lateral tuberal nucleus (UBERON:0000435) refers to a structure that is specific to humans and higher primates. See https://github.com/obophenotype/uberon/issues/2439 for more details. {xref="PMID:1362279"} synonym: "NLT system (sensu Teleostei)" EXACT [DOI:10.1016/0016-6480(71)90165-1] is_a: UBERON:0001937 ! lateral hypothalamic nucleus relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440043 name: superior paraolivary nucleus def: "A structure embedded in the superior olivary complex that is driven by input pathways from the octopus cells in the cochlear nucleus and the neurons of the medial nucleus of the trapezoid body." [DOI:10.1093/oxfordhb/9780190849061.013.11] synonym: "SPON" EXACT [DOI:10.1093/oxfordhb/9780190849061.013.11] is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440044 name: upper layers of the cortex def: "A laminar subdivision of the neocortex that is comprised of the more surface layers, commonly layers two through four." [DOI:10.1101/2022.10.12.511898] is_a: UBERON:8440004 ! laminar subdivision of the cortex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440045 name: second visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret that is rostral to area 17, caudal to area 19 and also abuts PPc and area 20a." [PMID:30632160] synonym: "area 18 (sensu Mustela putorius furo)" EXACT [PMID:30632160] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440046 name: third visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret located rostral to area 18 and caudal to area 21." [PMID:11884356, PMID:11884357] synonym: "area 19 (sensu Mustela putorius furo)" EXACT [PMID:11884357] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440047 name: fourth visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret that is caudal to the suprasylvian visual areas and rostral to area 19." [PMID:11884357] synonym: "area 21 (sensu Mustela putorius furo)" EXACT [PMID:11884357] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440048 name: temporal visual area a (sensu Mustela putorius furo) def: "A visual area in the ferret that is posterior to area 20b and lies lateral to areas 17, 18, and 19." [PMID:15054048] synonym: "area 20a (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440049 name: temporal visual area b (sensu Mustela putorius furo) def: "A visual area in the ferret that is posterior to area PS and anterior to 20a." [PMID:15054048] synonym: "area 20b (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440050 name: posterior parietal rostral cortical area (sensu Mustela putorius furo) def: "A multimodal area of the ferret involved in vision and somatosensation that lies between the medial wall of the hemisphere and the medial lip of the suprasylvian sulcus and is posterior to caudal somatosensory cortex (SIII) and anterior to PPc." [PMID:12427679] synonym: "posterior parietal cortex, rostral part (sensu Mustela putorius furo)" EXACT [DOI:10.1007/978-3-319-76626-3] synonym: "PPr (sensu Mustela putorius furo)" EXACT [PMID:12427679] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system relationship: part_of UBERON:0003942 ! somatosensory system [Term] id: UBERON:8440051 name: lower layers of the cortex def: "A laminar subdivision of the neocortex that is comprised of the deeper layers, commonly layers five and six, however, could also consist part of layer four." [DOI:10.1101/2022.10.12.511898] is_a: UBERON:8440004 ! laminar subdivision of the cortex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440052 name: posterior parietal caudal cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret that lies between the medial wall of the hemisphere and the medial lip of the suprasylvian sulcus and is posterior to PPr and anterior to area 18 (on the lateral gyrus) and area 21 (on the suprasylvian gyrus)." [PMID:12427679] synonym: "posterior parietal cortex, caudal part (sensu Mustela putorius furo)" EXACT [DOI:10.1007/978-3-319-76626-3] synonym: "PPc (sensu Mustela putorius furo)" EXACT [PMID:12427679] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440054 name: anteromedial lateral suprasylvian visual area (sensu Mustela putorius furo) def: "A visual area in the ferret that lies medial to the fundus in the suprasylvian sulcus, posterior to the MRSS and anterior to the PMLS." [PMID:18282308, PMID:20853515] synonym: "AMLS (sensu Mustela putorius furo)" EXACT [PMID:18282308, PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440055 name: anterolateral lateral suprasylvian visual area (sensu Mustela putorius furo) def: "A visual area in the ferret that lies on the lateral bank of the suprasylvian sulcus, posterior to SIII, anterior to area PLLS and medial to A1." [PMID:18282308, PMID:20853515] synonym: "ALLS (sensu Mustela putorius furo)" EXACT [PMID:18282308, PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440056 name: posteromedial lateral suprasylvian visual area (sensu Mustela putorius furo) def: "A visual area in the ferret that is located in the posterior bank of the suprasylvian sulcus." [PMID:31371456] synonym: "PMLS (sensu Mustela putorius furo)" EXACT [PMID:30595516, PMID:31371456] synonym: "PPS (sensu Mustela putorius furo)" EXACT [PMID:16135782] synonym: "PSS (sensu Mustela putorius furo)" EXACT [PMID:30595516, PMID:31371456] synonym: "SSY (sensu Mustela putorius furo)" EXACT [PMID:15892103] synonym: "Ssy (sensu Mustela putorius furo)" EXACT [PMID:15892103] synonym: "suprasylvian sulcal visual area (sensu Mustela putorius furo)" EXACT [PMID:15892103] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440059 name: posterolateral lateral suprasylvian visual area (sensu Mustela putorius furo) def: "A visual area in the ferret located in the lateral bank of the suprasylvian sulcus posterior to ALLS, anteriomedial to DLS and lateral to PMLS." [PMID:20853515] synonym: "PLLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440060 name: dorsal lateral suprasylvian visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret located in the lateral bank of the suprasylvian sulcus anterior to VLS and posterior to PLLS." [PMID:20853515] synonym: "DLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440061 name: ventral lateral suprasylvian visual area (sensu Mustela putorius furo) def: "A visual area in the ferret located in the medial bank of the suprasylvian sulvus lateral to area PMLS." [PMID:20853515] synonym: "VLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440062 name: posterior suprasylvian visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret that is lateral to the occipital visual areas (area 17, 18, 19 and 21), medial to perirhinal cortex and anterior to area 20b." [PMID:15054048] synonym: "PS (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0000411 ! visual cortex relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440063 name: anterior ectosylvian visual area (sensu Mustela putorius furo) def: "A multimodal area in the ferret responsive to visual, somatic, and auditory stimuli. The anterior border of AEV is coincident with the anterior portion of the ectosylvian gyrus containing higher order somatosensory cortical areas and the posterior border abuts higher order auditory cortical areas." [PMID:16101752] synonym: "AEV (sensu Mustela putorius furo)" EXACT [PMID:16101752] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0002104 ! visual system relationship: part_of UBERON:0002105 ! vestibulo-auditory system relationship: part_of UBERON:0003942 ! somatosensory system [Term] id: UBERON:8440064 name: spenial visual area (sensu Mustela putorius furo) def: "A visual area in the ferret located on the dorsal bank of the splenial sulcus between the medial border of area 17 and the lateral borter of CVA." [DOI:10.1007/978-3-319-76626-3, PMID:20853515] synonym: "SPLC (sensu Mustela putorius furo)" EXACT [PMID:20853515] synonym: "splenial sulcal cortex (sensu Mustela putorius furo)" EXACT [PMID:20853515] synonym: "SVA (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440066 name: cingulate visual area (sensu Mustela putorius furo) def: "A visual area of the ferret located in the fundus of the splenial sulcus medial to SVA." [PMID:20853515] synonym: "CVA (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440067 name: A lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) def: "A major laminae of the lateral geniculate nucleus of the ferret receiving crossed retinal inputs, located medial to the C laminae and lateral to the A1 and P laminae." [PMID:7309920] synonym: "A (sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440068 name: A1 lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) def: "A major laminae of the lateral geniculate nucleus of the ferret receiving uncrossed retinal inputs, located medial to the C and A laminae (Linden, Guillery & Cucchiaro, 1981)" [PMID:7309920] synonym: "A1(sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440069 name: C lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) def: "The most lateral laminae of the LGN of the ferret. The C laminae includes the C lamina, which is the innermost layer, followed by C1, C2, and C3 being the outermost lamina." [PMID:7309920] synonym: "C (sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440070 name: Perigeniculate lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) def: "A lamina of the LGN in the ferret located medial to the A lamina in the rostral regions of the visual thalamus ((Linden, Guillery & Cucchiaro, 1981; Dell, Innocenti, Hilgetag, & Manger, 2019)." [PMID:30632160, PMID:7309920] synonym: "P (sensu Mustela putorius furo)" EXACT [PMID:30632160, PMID:7309920] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:8440072 name: lateral tegmental nucleus def: "A nucleus of the brain that is embedded in the pontine tegmentum, it is defined on the basis of inputs from the lateral hypothalamic area and central amygdalar nucleus, it is located ventral to the locus ceruleus, dorsal to Barrington's nucleus, lateral to the laterodorsal tegmental nucleus, and medial to the midbrain trigeminal nucleus." [neuronames:1957] synonym: "LTN" EXACT OMO:0003000 [MBA:283] xref: MBA:283 xref: neuronames:1957 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:8440073 name: magnocellular reticular nucleus def: "A nucleus of the brain that is the most ventral portion of the gigantocellular nucleus in the medullary reticular formation, between the lateral paragigantocellular nucleus and the midline or nucleus raphe magnus. Functionally it belongs to the reticular formation (functional) of the subcortical motor system." [NeuroNames:1801] synonym: "MARN" EXACT OMO:0003000 [MBA:307] xref: MBA:307 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: part_of UBERON:0002155 ! gigantocellular nucleus relationship: part_of UBERON:0025525 ! motor system [Term] id: UBERON:8440074 name: interstitial nucleus of the vestibular nerve def: "A cluster of large nerve cells distributed in the vestibular component of vestibulocochlear nerve fibers that functionally belong to the vestibulomotor regions of the behavioral control column." [NeuroNames:719] comment: Interstitial nucleus of the vestibular nerve is revealed in Nissl stained sections and stain for acetylcholinesterase. {xref="NeuroNames:719"} synonym: "INV" EXACT OMO:0003000 [MBA:76] synonym: "ISVe" EXACT OMO:0003000 [NeuroNames:719] xref: MBA:76 xref: NeuroNames:719 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: part_of UBERON:0002731 ! vestibulocochlear nerve root [Term] id: UBERON:8440075 name: gustatory cortex def: "The part of the cerebral cortex that is responsible for the perception of taste." [WikipediaVersioned:Gustatory_cortex&oldid=1048584788] synonym: "gustatory area" EXACT [MBA:1057] xref: MBA:1057 is_a: UBERON:0002616 ! regional part of brain relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:8440076 name: somatomotor area def: "A part of the cerebral cortex that comprises of the primary motor cortex and the premotor cortex." [MBA:500] xref: MBA:500 is_a: UBERON:0002616 ! regional part of brain relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440077 name: rhinal incisure def: "A fissure in the cerebral cortex that separates the tenia tecta rostrally from the orbital gyri and caudally from the infralimbic cortex" [NeuroNames:1975] xref: MBA:1078 is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: present_in_taxon NCBITaxon:10090 {xref="MBA:1078"} relationship: present_in_taxon NCBITaxon:10114 {xref="NeuroNames:1975"} [Term] id: UBERON:8450001 name: egg follicle def: "An individual reproductive unit containing a single oocyte and one or several layers of support cells (Armstrong et al., 2020)." [DOI:10.1530/REP-18-0593] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 relationship: part_of UBERON:0000992 ! ovary property_value: dcterms-date "2022-04-19T11:08:10Z" xsd:dateTime property_value: seeAlso "https://github.com/obophenotype/uberon/issues/476" xsd:anyURI [Term] id: UBERON:8450002 name: excretory system def: "An anatomical system that eliminates waste products that arise as a result of metabolic activity." [GO:0007588] subset: human_reference_atlas xref: BTO:0006338 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system relationship: present_in_taxon NCBITaxon:9606 created_by: http://orcid.org/0000-0002-6095-8718 creation_date: 2022-05-25T18:21:29Z [Term] id: UBERON:8450003 name: embryonic craniocervical region def: "A craniocervical region that is part of an embryo." [https://orcid.org/0000-0002-6095-8718] is_a: UBERON:0007811 ! craniocervical region relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 relationship: part_of UBERON:0000922 ! embryo property_value: dcterms-date "2024-09-12T14:40:00Z" xsd:dateTime [Term] id: UBERON:8450004 name: intercostal element def: "An anatomical structure located within an intercostal space." [https://orcid.org/0000-0002-6095-8718] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 property_value: dcterms-date "2024-11-11T17:58:05Z" xsd:dateTime [Term] id: UBERON:8450007 name: insect mesothoracic leg def: "Leg of the insect mesothoracic segment." [doi:10.1017/CBO9780511818202.009] synonym: "insect middle leg" EXACT [] synonym: "insect second leg" EXACT [] synonym: "insect T2 leg" EXACT [] is_a: UBERON:0005895 ! insect leg relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 relationship: part_of UBERON:6000018 ! insect mesothoracic segment property_value: dcterms-date "2025-04-30T17:40:39Z" xsd:dateTime [Term] id: UBERON:8450008 name: insect metathoracic leg def: "Leg of the insect metathoracic segment." [doi:10.1017/CBO9780511818202.009] synonym: "insect hindleg" EXACT [] synonym: "insect T3 leg" EXACT [] synonym: "insect third leg" EXACT [] is_a: UBERON:0005895 ! insect leg relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 relationship: part_of UBERON:6000019 ! insect metathoracic segment property_value: dcterms-date "2025-04-30T17:42:10Z" xsd:dateTime [Term] id: UBERON:8470000 name: placental blood def: "Blood located in the placenta." [http://orcid.org/0000-0001-6595-0902, https://www.ncbi.nlm.nih.gov/books/NBK53254/] is_a: UBERON:0000178 ! blood property_value: dcterms-date "2022-04-04T11:06:09Z" xsd:dateTime [Term] id: UBERON:8470001 name: sublumbar lymph node def: "A lymph node with a lymph center located within the caudal abdomen and pelvis, on the ventral side of the lumbar region. Includes the medial iliac, internal iliac (previously termed hypogastric) and sacral lymph nodes." [https://orcid.org/0000-0002-0819-0473, NCIT:C77655, PMID:32655159] is_a: UBERON:0000029 ! lymph node property_value: dcterms-date "2022-05-26T11:59:51Z" xsd:dateTime [Term] id: UBERON:8470002 name: moderator band def: "A muscular trabecula in the right ventricle of the heart that connects the interventricular septum to the anterior wall and to the base of the anterior papillary muscle of the right ventricle." [https://doi.org/10.19080/APBIJ.2017.02.555595, https://orcid.org/0000-0001-7655-4833, PMID:20359929, PMID:22419933, PMID:30984450] comment: The morphology and structure of the septomarginal trabecula varies in different species. In humans, the septomarginal trabecula connects the interventricular septum with the anterior wall of the right ventricle at the base of the anterior papillary muscle. It is also present in non-human mammals where it stretches between the bases of the muscles papilaris subarteriosus and magnus. In some instances it carries the continuation of the right bundle branch of the conducting system of the heart. It is constituted of ordinary cardiac myocytes around and in between Purkinje myocytes. {xref="https://doi.org/10.19080/APBIJ.2017.02.555595", xref="PMID:20359929"} subset: human_reference_atlas synonym: "septomarginal trabecula" EXACT [PMID:22419933] is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0004151 ! cardiac chamber relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2022-12-13T13:11:03Z" xsd:dateTime [Term] id: UBERON:8480000 name: iliac vein smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an iliac vein." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0004696 ! venous system smooth muscle relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0005610 ! iliac vein property_value: dcterms-date "2022-06-17T14:34:50Z" xsd:dateTime [Term] id: UBERON:8480001 name: capillary of brain def: "A capillary that is part of the brain." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001982 ! capillary is_a: UBERON:0003499 ! brain blood vessel relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-06-24T09:28:31Z" xsd:dateTime [Term] id: UBERON:8480002 name: thoracic aorta smooth muscle tissue def: "A portion of smooth muscle tissue that is part of the thoracic aorta." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0004178 ! aorta smooth muscle tissue relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0001515 ! thoracic aorta property_value: dcterms-date "2022-06-24T09:30:54Z" xsd:dateTime [Term] id: UBERON:8480003 name: iliac artery smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an iliac artery." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0002111 ! artery smooth muscle tissue relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0005609 ! iliac artery property_value: dcterms-date "2022-06-24T09:32:07Z" xsd:dateTime [Term] id: UBERON:8480004 name: iliac vein endothelium def: "An endothelium that is part of an iliac vein." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001919 ! endothelium of vein relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0005610 ! iliac vein property_value: dcterms-date "2022-06-24T09:33:18Z" xsd:dateTime [Term] id: UBERON:8480005 name: placental artery endothelium def: "An endothelium that is part of the placental artery." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005292 ! extraembryonic tissue relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:8480007 ! placental artery property_value: dcterms-date "2022-06-24T09:34:25Z" xsd:dateTime [Term] id: UBERON:8480006 name: mesenteric lymphatic vessel def: "Lymphatic vessel that is part of the mesentery." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001473 ! lymphatic vessel relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0002095 ! mesentery property_value: dcterms-date "2022-06-24T09:35:29Z" xsd:dateTime [Term] id: UBERON:8480007 name: placental artery def: "An artery that is part of the placenta." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001637 ! artery is_a: UBERON:0022358 ! placenta blood vessel relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-06-24T11:25:24Z" xsd:dateTime [Term] id: UBERON:8480008 name: placental vein def: "A vein that is part of the placenta." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001638 ! vein is_a: UBERON:0022358 ! placenta blood vessel relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-06-27T09:30:52Z" xsd:dateTime [Term] id: UBERON:8480009 name: tendon of semitendinosus def: "A tendon that attaches to a semitendinosus." [https://orcid.org/0000-0002-0819-0473] synonym: "semitendinosus tendon" EXACT [FMA:46930] is_a: UBERON:0000043 ! tendon relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-09-15T07:47:19Z" xsd:dateTime [Term] id: UBERON:8480010 name: perianal space def: "An anatomical space located at the level of the anal orifice that is continuous with the ischioanal space laterally and superiorly and extends into the space between the external and internal sphincters." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:36:29Z" xsd:dateTime [Term] id: UBERON:8480011 name: deep post-anal space def: "An anatomical space found at the front of the apex of the coccyx that is limited superiorly by the plate of the levator ani muscle and inferiorly by the anococcygeal raphe." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:41:02Z" xsd:dateTime [Term] id: UBERON:8480012 name: intersphincteric space def: "An anatomical space located between the internal and external anal sphincters that continues inferiorly into the perianal space and superiorly into the rectum wall." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:43:20Z" xsd:dateTime [Term] id: UBERON:8480013 name: ischiorectal space def: "An anatomical space that extends from the levator ani muscle to the perineum lateral to the anal canal." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] synonym: "ischioanal space" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:46:32Z" xsd:dateTime [Term] id: UBERON:8480014 name: skin of buttock def: "A zone of skin that is part of the buttock." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001415 ! skin of pelvis relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0013691 ! buttock property_value: dcterms-date "2022-08-29T14:05:55Z" xsd:dateTime [Term] id: UBERON:8480015 name: supra levator space def: "An anatomical space limited superiorly by the peritoneum, laterally by the pelvic wall, medially by the rectal wall, and inferiorly by the levator ani muscle." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] synonym: "pelvic-rectal space" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:59:37Z" xsd:dateTime [Term] id: UBERON:8480016 name: perirenal space def: "A retroperitoneal space that lies between the anterior and posterior renal fascia; it is a paired inverted cone shaped of tissue containing the kidney, the proximal portion of the collecting system, renal and perirenal vasculature, perirenal lymphatics, adrenal glands and variable amount of fat." [PMID:24065628] synonym: "perinephric space" EXACT [PMID:28050791] is_a: UBERON:0003693 ! retroperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:02:35Z" xsd:dateTime [Term] id: UBERON:8480017 name: anterior pararenal space def: "A space that is bounded anteriorly by the posterior parietal peritoneum, laterally by the lateroconal fascia and posteriorly by the anterior renal fascia; it contains the pancreatic gland, retroperitoneal segments of the duodenum, ascending and descending colon and the mesenteric root, as well as adipose tissue." [PMID:24065628] is_a: UBERON:0003693 ! retroperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:19:27Z" xsd:dateTime [Term] id: UBERON:8480018 name: posterior pararenal space def: "A space that is bound anteriorly by the posterior renal fascia and posteriorly by the transversalis fascia, and it only contains adipose tissue, lymphatics and blood vessels." [PMID:24065628] is_a: UBERON:0003693 ! retroperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:20:55Z" xsd:dateTime [Term] id: UBERON:8480019 name: perirectal space def: "An extraperitoneal space bounded laterally by the perirectal fascia, posteriorly by the posterior pelvic fascia, and anteriorly by the rectovesical fascia in the male and the rectovaginal fascia in the female." [PMID:26006061] is_a: UBERON:0014456 ! extraperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:22:05Z" xsd:dateTime [Term] id: UBERON:8480020 name: perivesical space def: "An extraperitoneal space circumscribed by the umbilicovesical fascia anterior and laterally, and rectovaginal (in females) or rectovesical (in males) septum posteriorly, it encounters the urachus, obliterated umbilical vessels, urinary bladder and the lower uterine segment or seminal vesicles." [PMID:24065628] is_a: UBERON:0014456 ! extraperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:28:46Z" xsd:dateTime [Term] id: UBERON:8480021 name: prevesical space def: "An extraperitoneal space anterior and lateral to the umbilicovesical fascia, and posterior to the trasversalis fascia. Prevesical space laterally communicates with the properitoneal space of the abdominal wall and flanks; posteroinferiorly it surrounds the lateral walls of the urinary bladder, and anteroinferiorly it forms the retropubic space (the space of Retzius)." [PMID:24065628] is_a: UBERON:0014456 ! extraperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:29:38Z" xsd:dateTime [Term] id: UBERON:8480022 name: piriform sinus def: "A recess on either side of the laryngeal orifice, which is bounded medially by the aryepiglottic fold, laterally by the thyroid cartilage and thyrohyoid membrane. The pyriform sinus is involved in speech." [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "piriform fossa" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "piriform recess" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "pyriform fossa" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "pyriform recess" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "pyriform sinus" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "smuggler's fossa" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] is_a: UBERON:0002553 ! anatomical cavity relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:30:55Z" xsd:dateTime [Term] id: UBERON:8480023 name: skin of lateral lumbar region of abdomen def: "A zone of skin that is part of the lateral lumbar region of abdomen." [https://orcid.org/0000-0002-0819-0473] synonym: "skin of flank" EXACT [] is_a: UBERON:0001416 ! skin of abdomen relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0000180 ! lateral lumbar region of abdomen property_value: dcterms-date "2022-08-29T14:11:43Z" xsd:dateTime [Term] id: UBERON:8480024 name: skin of sacral region def: "A zone of skin that is part of the sacral region." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001415 ! skin of pelvis relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0005473 ! sacral region property_value: dcterms-date "2022-08-29T14:14:27Z" xsd:dateTime [Term] id: UBERON:8480025 name: skin of clavicle region def: "A zone of skin that is above the clavicle zone in the pectoral girdle region." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000014 ! zone of skin relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0001421 ! pectoral girdle region property_value: dcterms-date "2022-08-29T14:17:12Z" xsd:dateTime [Term] id: UBERON:8480026 name: skin of iliac crest region def: "A zone of skin that is above the iliac crest in the pelvic girdle bone/zone." [https://orcid.org/0000-0002-0819-0473] synonym: "skin of posterior iliac crest region" BROAD [] is_a: UBERON:0001415 ! skin of pelvis relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone property_value: dcterms-date "2022-08-29T14:19:16Z" xsd:dateTime [Term] id: UBERON:8480027 name: temple def: "The region where the frontal, parietal, temporal, and sphenoid bones fuse." [WikipediaVersioned:Temple_(anatomy)&oldid=1104547137] comment: This term does not refer to the "gena" of insects, which temple in that instance is a synonym (listed here: http://portal.hymao.org/projects/32/public/ontology_class/show_expanded/482). synonym: "temple region" EXACT [http://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0003251 ! temporal part of head relationship: part_of UBERON:8480069 ! temporofacial region property_value: dcterms-date "2022-08-29T14:32:57Z" xsd:dateTime [Term] id: UBERON:8480028 name: skin of temple def: "A zone of skin that is part of the temple." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001084 ! skin of head relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:8480027 ! temple property_value: dcterms-date "2022-08-30T06:46:55Z" xsd:dateTime [Term] id: UBERON:8480029 name: skin of external genitalia def: "A zone of skin that is part of the external genitalia." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0004176 ! external genitalia property_value: dcterms-date "2022-08-30T06:55:06Z" xsd:dateTime [Term] id: UBERON:8480030 name: skin of breast def: "A zone of skin that is part of the breast." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001868 ! skin of chest relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0000310 ! breast property_value: dcterms-date "2022-08-29T14:03:54Z" xsd:dateTime [Term] id: UBERON:8480031 name: tooth root apical papilla def: "The portion of the dental papilla located at the apex of the root of developing permanent tooth that is responsible for the progressive elongation and maturation of the root tooth." [PMID:18498881, PMID:34026757] synonym: "apical papilla" EXACT [PMID:18215674] synonym: "apical papilla of immature permanent teeth" EXACT [PMID:30834270] is_a: UBERON:0000479 ! tissue relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-11-02T07:48:12Z" xsd:dateTime property_value: editor_note "The surface layer is formed by a dense collagen matrix with perpendicular aligned collagen fibers. The inner layer consists of a loosely disorganized collagen matrix with a high concentration of mesenchymal stem cells. Fully mature roots lack apical papilla." xsd:string {xref="PMID:18498881", xref="PMID:34026757"} [Term] id: UBERON:8480032 name: neck of pancreas def: "The portion of the pancreas that connects the head of pancreas and the body of pancreas." [NCIT:C158551] synonym: "neck of the pancreas" EXACT [NCIT:C158551] synonym: "pancreatic neck" EXACT [FMA:14517] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0001264 ! pancreas property_value: dcterms-date "2023-12-21T09:57:11Z" xsd:dateTime [Term] id: UBERON:8480033 name: interlobular stroma of mammary gland def: "The interlobular stroma of the mammary gland lobule separates the lobules and intralobular stroma from any substantial direct contact with the adipose tissue. It is more compact than the intralobular stroma." [PMID:18710550] is_a: UBERON:0003584 ! mammary gland connective tissue relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-10-03T14:21:47Z" xsd:dateTime [Term] id: UBERON:8480034 name: intralobular stroma of mammary gland def: "The intralobular stroma of the mammary gland lobule contains loosely connected fibroblasts. It is surrounded by the more compact interlobular stroma." [PMID:18710550] is_a: UBERON:0003584 ! mammary gland connective tissue relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-10-03T14:38:17Z" xsd:dateTime [Term] id: UBERON:8480035 name: cervical transformation zone epithelium def: "The area of epithelium that lies between the native and unaffected columnar epithelium of the endocervical canal and the native squamous epithelium deriving from the vaginal and ectocervical squamous epithelium." [https://www.ncbi.nlm.nih.gov/books/NBK568392/] comment: Before puberty and after menopause the transformation zone resides in the cervical canal. During the reproductive age of the woman it is located just outside the external os. Squamous cervical cancer originates in the transition zone. Glandular cervical cancer originates in either the transformation zone or the glandular epithelium above the transformation zone. The cervical transformation zone epithelium is an area where squamous metaplasia occurs. {xref="PMID:28639968", xref="PMID:10728686"} synonym: "cervical transformation zone" BROAD [PMID:29944714] synonym: "cervix transition zone" BROAD [PMID:28932806] synonym: "transformation (transitional) zone" BROAD [https://myhealth.alberta.ca/Health/Pages/conditions.aspx?hwid=stt11635] synonym: "transformation zone of the cervix" BROAD [https://myhealth.alberta.ca/Health/Pages/conditions.aspx?hwid=stt11635] is_a: UBERON:0004801 ! cervix epithelium relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-11-29T14:10:04Z" xsd:dateTime [Term] id: UBERON:8480036 name: posterior wall of the glottis def: "Part of the glottis most closely associated with the pharynx represented anatomically by the posterior union of the developing cricoid cartilage." [PMID:19501483, PMID:25272366] synonym: "larynx posterior commissure" RELATED [PMID:25272366] synonym: "posterior commissure of larynx" RELATED [PMID:25272366] synonym: "posterior end of the glottis" EXACT [PMID:19501483] synonym: "posterior glottis" EXACT [PMID:22614807] synonym: "posterior portion of the glottis" EXACT [PMID:19501483] is_a: UBERON:0000060 ! anatomical wall relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0002486 ! glottis property_value: curator_notes "The posterior commissure of larynx is in reality a misnomer; the vocal folds never join at their posterior ends, and the posterior aspect of the glottis is in reality a collapsible wall." xsd:string {xref="PMID:25272366"} property_value: dcterms-date "2022-12-07T08:52:45Z" xsd:dateTime [Term] id: UBERON:8480037 name: subserosa of fallopian tube def: "Subserosa that is part of the uterine tube. It contains loose connective tissue, blood vessels and lymphatic tissue." [ISBN:9783662026762, PMID:30095490] synonym: "subserosa of oviduct" EXACT [PMID:34440264] synonym: "subserosa of uterine tube" EXACT [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012375 ! subserosa relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0003889 ! fallopian tube property_value: dcterms-date "2022-10-21T08:55:11Z" xsd:dateTime [Term] id: UBERON:8480038 name: meningeal myeloid tissue def: "Lymphomyeloid tissue that consists mainly in granulopoietic cells but that also contains erythroid and lymphoid cells in different stages of maturation." [PMID:3765338] is_a: UBERON:0034769 ! lymphomyeloid tissue relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: curator_notes "May be present in Amia and Lepisosteus, Polyodon and Acipenser, but not Polypterus." xsd:string {xref="https://doi.org/10.1111/j.1096-3642.1998.tb02524.x"} property_value: dcterms-date "2022-10-31T07:50:56Z" xsd:dateTime [Term] id: UBERON:8480039 name: Oka organ def: "Organ involved in immune defense against foreign material." [PMID:20580831] synonym: "antigen clearance organ" RELATED [PMID:12443012] synonym: "haemolymph filtering organ" RELATED [PMID:12443012] synonym: "Nakamura organ" RELATED [PMID:20580831] synonym: "Oka (lymphoid) organ" EXACT [PMID:16352551] synonym: "penaeid lymphoid organ" RELATED [PMID:20580831] synonym: "phagocytic organ" RELATED [PMID:12443012] is_a: UBERON:0005057 ! immune organ relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-11-22T09:15:50Z" xsd:dateTime [Term] id: UBERON:8480040 name: ovarian fluid def: "Fish ovary secretion released with eggs." [PMID:8526977] xref: BTO:0004569 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006537 ! female reproductive gland secretion relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-10-31T07:56:47Z" xsd:dateTime [Term] id: UBERON:8480041 name: testicular sheath def: "Bilayer sheath that covers both the insect male mature gonad and a portion of genital disc-derived structures. It is composed of an outer pigment cell layer, an inner muscle cell layer, and their respective basal laminae." [PMID:9553045] synonym: "testis sheath" EXACT [] {comment="CURATOR NOTE https://www.fortunejournals.com/ijpaes/admin/php/uploads/798_pdf.pdf"} is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0000473 ! testis property_value: dcterms-date "2022-11-22T09:21:36Z" xsd:dateTime [Term] id: UBERON:8480042 name: menstrual fluid def: "Fluid that consists of necrotic and shed endometrial tissue and blood from mucosal vessels discharged during the reproductive years approximately once a month." [ISBN:0781750563] synonym: "menstrual blood" RELATED [https://en.wikipedia.org/wiki/Menstruation] is_a: UBERON:0006314 ! bodily fluid relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-12-13T12:30:22Z" xsd:dateTime [Term] id: UBERON:8480043 name: pelvic wall def: "The tissues that surround the organs that are present within the pelvic region of the trunk. The walls of the pelvis are formed by bones and ligaments that are partly lined with muscles covered with fascia and parietal peritoneum." [ISBN:1451110324] is_a: UBERON:0000060 ! anatomical wall relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0002355 ! pelvic region of trunk property_value: dcterms-date "2022-12-15T13:57:29Z" xsd:dateTime [Term] id: UBERON:8480044 name: long bone cartilage element def: "A skeletal element that is part of a long bone and composed of cartilage tissue." [FMA:32676, https://orcid.org/0000-0002-0819-0473] synonym: "long bone cartilage" EXACT [PMID:33169221] is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0002495 ! long bone property_value: dcterms-date "2023-01-18T07:04:30Z" xsd:dateTime [Term] id: UBERON:8480045 name: subiliac lymph node def: "A lymph node located inferior to the ilium." [NCIT:C92594] synonym: "subiliac lymphocenter" BROAD [https://dr.lib.iastate.edu/handle/20.500.12876/46336] xref: FMA:323407 is_a: UBERON:0015877 ! parietal pelvic lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: curator_notes "This term is frequently used in swine (PMID:35566137, PMID:27866702) and mice (PMID:16624319, PMID:23328410). According to PMID:32882076 âinguinal lymph nodeâ (PMID:25919005, PMID:17804011) and âsuperficial inguinal lymph nodeâ (PMID:11581317) have been used incorrectly as synonyms of âsubiliac lymph nodeâ. In addition, âprefemoral lymph nodeâ and âsubiliac lymph nodeâ have been used as synonyms (PMID:22561151, PMID:23228067, PMID:24752354, PMID:8727908). However, in the last version of the 'Systematized Nomenclature of Medicine, International Version' ontology, both terms are linked to different classes, âsubiliac lymph nodeâ to âlymp node of pelvis, NOSâ and âprefemoral lymph nodeâ to âlymph node of lower extremity, NOSâ." xsd:string property_value: dcterms-date "2023-02-03T06:41:18Z" xsd:dateTime [Term] id: UBERON:8480046 name: mucosa of rumen def: "The mucosa of rumen is composed of a keratinised stratified squamous epithelium, is rich in mucopolysaccharides and is characterized by the presence of parakeratotis." [PMID:4236739] synonym: "rumen mucosa" EXACT [PMID:4236739] is_a: UBERON:0001199 ! mucosa of stomach relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0007365 ! rumen property_value: dcterms-date "2023-02-08T08:53:48Z" xsd:dateTime [Term] id: UBERON:8480047 name: retroauricular region def: "The retroauricular region is the area located behind the auricle of the outer ear." [http://orcid.org/0000-0002-0819-0473] synonym: "retro-auricular area" EXACT [PMID:22592943] synonym: "retro-auricular part of head" EXACT [FMA:322167] synonym: "retro-auricular region" EXACT [PMID:33988139] synonym: "retroauricular area" EXACT [PMID:29470606] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0000033 ! head property_value: curator_notes "Exists at least in all mammals. https://www.imaios.com/en/vet-Anatomy/Vet-Anatomical-Part/Retroauricular-region" xsd:string property_value: dcterms-date "2023-02-09T09:39:18Z" xsd:dateTime [Term] id: UBERON:8480048 name: calf def: "The posterior aspect of the lower extremity that extends from the knee to the foot." [NCIT:C93027] synonym: "calf of leg" EXACT [FMA:24984] synonym: "posterior curral region" EXACT [FMA:24984] synonym: "posterior leg region" EXACT [FMA:24984] synonym: "posterior part of leg" EXACT [FMA:24984] synonym: "posterior region of leg" EXACT [FMA:24984] synonym: "regio cruris posterior" EXACT [FMA:24984] synonym: "regio surae" EXACT [FMA:24984] synonym: "sura" EXACT [FMA:24984] synonym: "sural region" EXACT [FMA:24984] xref: FMA:24984 is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0003823 ! hindlimb zeugopod property_value: dcterms-date "2023-02-27T19:56:29Z" xsd:dateTime [Term] id: UBERON:8480049 name: front hindlimb zeugopod def: "The frontal aspect of the lower extremity that extends from the knee to the foot." [https://orcid.org/0000-0002-0819-0473] synonym: "anterior crural region" EXACT [FMA:24985] synonym: "anterior leg region" EXACT [FMA:24985] synonym: "anterior region of leg" EXACT [FMA:24985] synonym: "front of the lower leg" EXACT [https://orcid.org/0000-0002-0819-0473] synonym: "pretibial" RELATED [https://en.wiktionary.org/wiki/pretibial] synonym: "shin" EXACT [FMA:24985] xref: FMA:24985 is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0003823 ! hindlimb zeugopod property_value: dcterms-date "2023-02-27T20:12:17Z" xsd:dateTime [Term] id: UBERON:8480050 name: skin of calf def: "Skin of the back of the lower leg." [https://orcid.org/0000-0002-0819-0473] synonym: "skin of posterior part of leg" EXACT [FMA:37840] xref: FMA:37840 is_a: UBERON:0004264 ! lower leg skin relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:8480048 ! calf property_value: dcterms-date "2023-02-27T20:17:12Z" xsd:dateTime [Term] id: UBERON:8480051 name: thoracolumbar junction def: "Area of transition between the posterior curvature of the thoracic spine and the anterior curvature of the lumbar spine." [PMID:29399115] synonym: "thora-columbar junction" EXACT [PMID:27441179] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0009568 ! trunk region of vertebral column property_value: dcterms-date "2023-04-26T07:26:56Z" xsd:dateTime [Term] id: UBERON:8480052 name: skin of thoracolumbar junction def: "A zone of skin that is part of the thoracolumbar junction." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001068 ! skin of back relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:8480051 ! thoracolumbar junction property_value: dcterms-date "2023-04-26T07:45:34Z" xsd:dateTime [Term] id: UBERON:8480053 name: skin of umbilical area def: "A zone of skin that is part of the umbilicus and the periumbilical region." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0001416 ! skin of abdomen relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-04-26T07:54:47Z" xsd:dateTime [Term] id: UBERON:8480054 name: ileocecal lymph node def: "Mesenteric lymph node embedded in the ileocecal fold at both sides of the concavity of the cecum. It drains the terminal ileum." [PMID:15493265, PMID:18251298] synonym: "ileocaecal lymph node" EXACT [PMID:15493265] is_a: UBERON:0002509 ! mesenteric lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: curator_notes "According to the Segen's Medical Dictionary, Farlex, Inc., 2011 the ileocaecal lymph node is an obsolete term that formerly dignified those ileocolic lymph nodes lying in the ileocaecal angle (https://medical-dictionary.thefreedictionary.com/ileocaecal+lymph+nodes). However, this term is still used in domesticated animals as pigs (e.g. PMID:31031713), cats (e.g. PMID:35964104), sheeps (e.g. PMID:15493265) and calves (e.g. PMID:23000583). In few cases this term has been used in humans (PMID:32420296, PMID:35277366, PMID:31456616). Consider if appropriate as a subclass of ileocolic lymph node (UBERON:0016378)." xsd:string property_value: dcterms-date "2023-05-11T12:09:21Z" xsd:dateTime [Term] id: UBERON:8480055 name: subcarinal lymph node def: "Superior mediastinal lymph node located in the thoracic cavity between the lungs. It is bordered by the carina of the trachea, the lower lobe bronchus on the left and the intermediate bronchus on the right." [NCIT:C117873, PMID:30422458] synonym: "left subcarinal lymph node" NARROW [PMID:36899970] synonym: "subcarinal node" EXACT [PMID:30422458] is_a: UBERON:0038651 ! superior mediastinal lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: curator_notes "Subcarinal lymph nodes (station 7) in International Association for the Study of Lung Cancer (IASLC) map coincide with station 2, 8, and 10 lymph nodes in Wangâs map. PMID:26807271" xsd:string property_value: dcterms-date "2023-05-11T12:12:47Z" xsd:dateTime [Term] id: UBERON:8480056 name: left supraclavicular lymph node def: "Supraclavicular lymph node located on the left side of a entire appendicular skeleton. The left supraclavicular lymph node drains the kidney, cervix, testis, and pancreas into the thoracic duct." [PMID:31335020] is_a: UBERON:0035279 ! supraclavicular lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-11T12:20:06Z" xsd:dateTime [Term] id: UBERON:8480057 name: right supraclavicular lymph node def: "Supraclavicular lymph node located on the right side of a entire appendicular skeleton. The right supraclavicular lymph node drains the breast, lung and upper esophagus into the right lymphatic duct." [PMID:31335020] is_a: UBERON:0035279 ! supraclavicular lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-11T12:22:02Z" xsd:dateTime [Term] id: UBERON:8480058 name: Virchow's lymph node def: "Lymph node that is the most proximal of the left supraclavicular lymph nodes. It receives afferent lymphatic drainage from the left head, neck, chest, abdomen, pelvis, and bilateral lower extremities, and drains into the jugulo-subclavian venous junction via the thoracic duct." [PMID:31335020, PMID:32310560] synonym: "Troisier sign" RELATED [PMID:32310560] synonym: "Virchow's node" EXACT [PMID:32310560] is_a: UBERON:8480056 ! left supraclavicular lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-11T12:23:20Z" xsd:dateTime [Term] id: UBERON:8480059 name: perigastric lymph node def: "Lymph node located in the perigastric region." [https://orcid.org/0000-0002-0819-0473] synonym: "paragastric lymph node" RELATED [PMID:3172586] synonym: "peri-gastric lymph node" EXACT [PMID:28447049] synonym: "peri-gastric node" EXACT [PMID:28447049] synonym: "perigastric node" EXACT [PMID:9752878] is_a: UBERON:0002507 ! abdominal lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: curator_notes "The perigastric lymph nodes include at least the right paracardial lymph nodes, left paracardial lymph nodes, lesser curvature lymph nodes, greater curvature lymph nodes, suprapyloric lymph nodes and infrapyloric lymph nodes. PMID:26973384" xsd:string property_value: dcterms-date "2023-05-11T12:28:12Z" xsd:dateTime [Term] id: UBERON:8480060 name: paraspinal region def: "The region of the body adjacent to the vertebral column." [NCIT:C166000] synonym: "paraspinal" EXACT [NCIT:C129461] is_a: UBERON:0000154 ! posterior region of body relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-16T06:37:51Z" xsd:dateTime [Term] id: UBERON:8480061 name: pericardial region def: "The region of the body adjacent to the pericardium and heart." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0009569 ! subdivision of trunk relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-16T06:47:28Z" xsd:dateTime [Term] id: UBERON:8480062 name: femoral head cartilage def: "A hyaline articular cartilage that covers the head of femur. Provides cushioning, softness and low friction for the hip joint." [PMID:29262200, PMID:36292459] is_a: UBERON:0004266 ! upper leg connective tissue is_a: UBERON:0007391 ! pelvic appendage cartilage tissue is_a: UBERON:0010996 ! articular cartilage of joint is_a: UBERON:8480044 ! long bone cartilage element relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0006767 ! head of femur property_value: dcterms-date "2023-05-30T06:34:18Z" xsd:dateTime [Term] id: UBERON:8480063 name: dorsal iris def: "The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration." [PMID:17030116, PMID:29579253] synonym: "dorsal rim of the iris" EXACT [PMID:29579253] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0001769 ! iris property_value: curator_notes "In urodeles, lens regeneration proceeds through two steps. The first step involves the entire circumference of the iris pigmented epithelium. The second step is confined to the pigmented epithelial cells located along the dorsal rim of the iris and involves dorsal-specific activation of the Wnt signaling pathway." xsd:string property_value: dcterms-date "2023-06-06T08:06:04Z" xsd:dateTime [Term] id: UBERON:8480064 name: secretory coil of eccrine sweat gland def: "Tightly coiled tubule whose function is the production of sweat. The secretory tubule has three types of cells: clear, dark, and myoepithelial." [PMID:31608304, PMID:34395417] is_a: UBERON:0003914 ! epithelial tube relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0000423 ! eccrine sweat gland property_value: dcterms-date "2023-06-08T06:48:01Z" xsd:dateTime [Term] id: UBERON:8480065 name: labial gland def: "The labial gland is one of the minor salivary glands, located mainly under the mucosal epithelium of the upper and lower lip and within the orbicularis oris muscle fibers. The labial gland secrete mucous and serous substances to maintain oral health. In particular, the inferior labial gland not only promotes moisturization in the oral cavity but also secretes substances with antibacterial effects." [PMID:34422599] subset: human_reference_atlas synonym: "labial minor salivary gland" EXACT [PMID:34274288] synonym: "labial salivary gland" EXACT [FMA:59792, NCIT:C32904] xref: BTO:0001548 is_a: UBERON:0001830 ! minor salivary gland relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-06-19T12:41:05Z" xsd:dateTime [Term] id: UBERON:8480066 name: interscapular region def: "The region in the upper part of the back between the shoulder blades." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000475 ! organism subdivision relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0001137 ! dorsum property_value: dcterms-date "2023-06-23T09:06:25Z" xsd:dateTime [Term] id: UBERON:8480067 name: bone marrow microvessel def: "Microvessel located in the bone marrow, including arterioles and sinusoids." [PMID:32286470] is_a: UBERON:8410081 ! blood microvessel relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-06-26T13:48:30Z" xsd:dateTime [Term] id: UBERON:8480068 name: saphenous vein smooth muscle tissue def: "A portion of smooth muscle tissue that is part of a saphenous vein." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0004696 ! venous system smooth muscle relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0007318 ! saphenous vein property_value: dcterms-date "2023-08-31T11:41:09Z" xsd:dateTime [Term] id: UBERON:8480069 name: temporofacial region def: "The region at each side of the face comprising the temple and the cheek." [PMID:28448262] comment: This term is used to map the tissue from which the Muraoka cell line (CVCL_E042) originates. {xref="PMID:1357816"} is_a: UBERON:0001444 ! subdivision of head relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-09-18T06:03:43Z" xsd:dateTime [Term] id: UBERON:8480070 name: lateral wall of nasal cavity def: "An anatomical wall that surrounds the nasal cavity. The lateral walls of the nasal cavity are spiral shaped mucosal folds that overlie the turbinate and sinus ducts draining into the ostia." [PMID:31334952] synonym: "lateral wall of the nose" EXACT [NCIT:C160988] synonym: "nasal lateral wall" EXACT [NCIT:C160988] is_a: UBERON:0000060 ! anatomical wall relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2024-01-05T14:21:31Z" xsd:dateTime [Term] id: UBERON:8480071 name: skin of lobe of tail def: "A zone of skin that is part of the lobe tail." [https://orcid.org/0000-0002-0819-0473] synonym: "fluke skin" NARROW [PMID:21959845] is_a: UBERON:0003534 ! tail skin relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0013131 ! lobe of tail property_value: dcterms-date "2023-08-29T09:37:23Z" xsd:dateTime [Term] id: UBERON:8480072 name: skin of shin def: "A zone of skin on the front hindlimb zeugopod." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0004264 ! lower leg skin relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:8480049 ! front hindlimb zeugopod property_value: dcterms-date "2023-08-29T09:47:32Z" xsd:dateTime [Term] id: UBERON:8480073 name: skin of scapula region def: "A zone of skin that is above the scapula in the upper back region." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0009015 ! upper back skin relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-08-29T09:53:33Z" xsd:dateTime [Term] id: UBERON:8480074 name: skin of gonad def: "A zone of skin part of some gonad." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0000991 ! gonad property_value: dcterms-date "2023-08-29T10:24:24Z" xsd:dateTime [Term] id: UBERON:8490000 name: right upper third secondary molar tooth def: "A upper third secondary molar tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 1" EXACT [] synonym: "FDI tooth 18" EXACT [] synonym: "right upper third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55696] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018577 ! upper third secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490001 name: right upper second secondary molar tooth def: "A upper second secondary molar tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 2" EXACT [] synonym: "FDI tooth 17" EXACT [] synonym: "right upper second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55697] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018576 ! upper second secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490002 name: right upper first secondary molar tooth def: "A upper first secondary molar tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 3" EXACT [] synonym: "FDI tooth 16" EXACT [] synonym: "right upper first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55698] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018575 ! upper first secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490003 name: right upper second secondary premolar tooth def: "A upper second secondary premolar tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 4" EXACT [] synonym: "FDI tooth 15" EXACT [] synonym: "right upper second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55688] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018572 ! upper second secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490004 name: right upper first secondary premolar tooth def: "A upper first secondary premolar tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 5" EXACT [] synonym: "FDI tooth 14" EXACT [] synonym: "right upper first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55689] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018571 ! upper first secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490005 name: right upper secondary canine tooth def: "A upper secondary canine tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 6" EXACT [] synonym: "FDI tooth 13" EXACT [] synonym: "right upper secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55798] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018561 ! upper secondary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490006 name: right upper lateral secondary incisor tooth def: "A upper lateral secondary incisor tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 7" EXACT [] synonym: "FDI tooth 12" EXACT [] synonym: "right upper lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55680] is_a: UBERON:0016455 ! upper lateral secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490007 name: right upper central secondary incisor tooth def: "A upper central secondary incisor tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth 8" EXACT [] synonym: "FDI tooth 11" EXACT [] synonym: "right upper central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55681] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0016454 ! upper central secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490008 name: right lower third secondary molar tooth def: "A lower third secondary molar tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 32" EXACT [] synonym: "FDI tooth 48" EXACT [] synonym: "right lower third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55707] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018580 ! lower third secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490009 name: right lower second secondary molar tooth def: "A lower second secondary molar tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 31" EXACT [] synonym: "FDI tooth 47" EXACT [] synonym: "right lower second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55706] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018579 ! lower second secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490010 name: right lower first secondary molar tooth def: "A lower first secondary molar tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 30" EXACT [] synonym: "FDI tooth 46" EXACT [] synonym: "right lower first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55705] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018578 ! lower first secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490011 name: right lower second secondary premolar tooth def: "A lower second secondary premolar tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 29" EXACT [] synonym: "FDI tooth 45" EXACT [] synonym: "right lower second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55695] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018574 ! lower second secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490012 name: right lower first secondary premolar tooth def: "A lower first secondary premolar tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 28" EXACT [] synonym: "FDI tooth 44" EXACT [] synonym: "right lower first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55694] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018573 ! lower first secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490013 name: right lower secondary canine tooth def: "A lower secondary canine tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 27" EXACT [] synonym: "FDI tooth 43" EXACT [] synonym: "right lower secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55686] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018562 ! lower secondary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490014 name: right lower lateral secondary incisor tooth def: "A lower lateral secondary incisor tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 26" EXACT [] synonym: "FDI tooth 42" EXACT [] synonym: "right lower lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57140] is_a: UBERON:0018570 ! lower lateral secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490015 name: right lower central secondary incisor tooth def: "A lower central secondary incisor tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth 25" EXACT [] synonym: "FDI tooth 41" EXACT [] synonym: "right lower central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57142] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018568 ! lower central secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490016 name: right upper second primary molar tooth def: "A upper second primary molar tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth A" EXACT [] synonym: "FDI tooth 55" EXACT [] synonym: "right upper second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84240] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018599 ! upper second primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490017 name: right upper first primary molar tooth def: "A upper first primary molar tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth B" EXACT [] synonym: "FDI tooth 54" EXACT [] synonym: "right upper first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84238] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018588 ! upper first primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490018 name: right upper primary canine tooth def: "A upper primary canine tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth C" EXACT [] synonym: "FDI tooth 53" EXACT [] synonym: "right upper primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84230] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018597 ! upper primary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490019 name: right upper lateral primary incisor tooth def: "A upper lateral primary incisor tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth D" EXACT [] synonym: "FDI tooth 52" EXACT [] synonym: "right upper lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84222] is_a: UBERON:0018594 ! upper lateral primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490020 name: right upper central primary incisor tooth def: "A upper central primary incisor tooth that is in the right side of the upper jaw region." [] synonym: "ADA tooth E" EXACT [] synonym: "FDI tooth 51" EXACT [] synonym: "right upper central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84220] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018593 ! upper central primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490021 name: right lower second primary molar tooth def: "A lower second primary molar tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth T" EXACT [] synonym: "FDI tooth 85" EXACT [] synonym: "right lower second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84244] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018600 ! lower second primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490022 name: right lower first primary molar tooth def: "A lower first primary molar tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth S" EXACT [] synonym: "FDI tooth 84" EXACT [] synonym: "right lower first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84242] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018589 ! lower first primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490023 name: right lower primary canine tooth def: "A lower primary canine tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth R" EXACT [] synonym: "FDI tooth 83" EXACT [] synonym: "right lower primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84232] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018598 ! lower primary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490024 name: right lower lateral primary incisor tooth def: "A lower lateral primary incisor tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth Q" EXACT [] synonym: "FDI tooth 82" EXACT [] synonym: "right lower lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84226] is_a: UBERON:0018596 ! lower lateral primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490025 name: right lower central primary incisor tooth def: "A lower central primary incisor tooth that is in the right side of the lower jaw region." [] synonym: "ADA tooth P" EXACT [] synonym: "FDI tooth 81" EXACT [] synonym: "right lower central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84224] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018595 ! lower central primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-13T00:00:00Z [Term] id: UBERON:8490026 name: left upper third secondary molar tooth def: "A upper third secondary molar tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 16" EXACT [] synonym: "FDI tooth 28" EXACT [] synonym: "left upper third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55701] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018577 ! upper third secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490027 name: left upper second secondary molar tooth def: "A upper second secondary molar tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 15" EXACT [] synonym: "FDI tooth 27" EXACT [] synonym: "left upper second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55700] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018576 ! upper second secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490028 name: left upper first secondary molar tooth def: "A upper first secondary molar tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 14" EXACT [] synonym: "FDI tooth 26" EXACT [] synonym: "left upper first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55699] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018575 ! upper first secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490029 name: left upper second secondary premolar tooth def: "A upper second secondary premolar tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 13" EXACT [] synonym: "FDI tooth 25" EXACT [] synonym: "left upper second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55691] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018572 ! upper second secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490030 name: left upper first secondary premolar tooth def: "A upper first secondary premolar tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 12" EXACT [] synonym: "FDI tooth 24" EXACT [] synonym: "left upper first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55690] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018571 ! upper first secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490031 name: left upper secondary canine tooth def: "A upper secondary canine tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 11" EXACT [] synonym: "FDI tooth 23" EXACT [] synonym: "left upper secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55799] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018561 ! upper secondary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490032 name: left upper lateral secondary incisor tooth def: "A upper lateral secondary incisor tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 10" EXACT [] synonym: "FDI tooth 22" EXACT [] synonym: "left upper lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55683] is_a: UBERON:0016455 ! upper lateral secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490033 name: left upper central secondary incisor tooth def: "A upper central secondary incisor tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth 9" EXACT [] synonym: "FDI tooth 21" EXACT [] synonym: "left upper central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55682] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0016454 ! upper central secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490034 name: left lower third secondary molar tooth def: "A lower third secondary molar tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 17" EXACT [] synonym: "FDI tooth 38" EXACT [] synonym: "left lower third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55702] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018580 ! lower third secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490035 name: left lower second secondary molar tooth def: "A lower second secondary molar tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 18" EXACT [] synonym: "FDI tooth 37" EXACT [] synonym: "left lower second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55703] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018579 ! lower second secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490036 name: left lower first secondary molar tooth def: "A lower first secondary molar tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 19" EXACT [] synonym: "FDI tooth 36" EXACT [] synonym: "left lower first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55704] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018578 ! lower first secondary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490037 name: left lower second secondary premolar tooth def: "A lower second secondary premolar tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 20" EXACT [] synonym: "FDI tooth 35" EXACT [] synonym: "left lower second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55692] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018574 ! lower second secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490038 name: left lower first secondary premolar tooth def: "A lower first secondary premolar tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 21" EXACT [] synonym: "FDI tooth 34" EXACT [] synonym: "left lower first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55693] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018573 ! lower first secondary premolar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490039 name: left lower secondary canine tooth def: "A lower secondary canine tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 22" EXACT [] synonym: "FDI tooth 33" EXACT [] synonym: "left lower secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55687] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018562 ! lower secondary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490040 name: left lower lateral secondary incisor tooth def: "A lower lateral secondary incisor tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 23" EXACT [] synonym: "FDI tooth 32" EXACT [] synonym: "left lower lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57141] is_a: UBERON:0018570 ! lower lateral secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490041 name: left lower central secondary incisor tooth def: "A lower central secondary incisor tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth 24" EXACT [] synonym: "FDI tooth 31" EXACT [] synonym: "left lower central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57143] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018568 ! lower central secondary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490042 name: left upper second primary molar tooth def: "A upper second primary molar tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth J" EXACT [] synonym: "FDI tooth 65" EXACT [] synonym: "left upper second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84241] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018599 ! upper second primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490043 name: left upper first primary molar tooth def: "A upper first primary molar tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth I" EXACT [] synonym: "FDI tooth 64" EXACT [] synonym: "left upper first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84239] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018588 ! upper first primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490044 name: left upper primary canine tooth def: "A upper primary canine tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth H" EXACT [] synonym: "FDI tooth 63" EXACT [] synonym: "left upper primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84231] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018597 ! upper primary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490045 name: left upper lateral primary incisor tooth def: "A upper lateral primary incisor tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth G" EXACT [] synonym: "FDI tooth 62" EXACT [] synonym: "left upper lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84223] is_a: UBERON:0018594 ! upper lateral primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490046 name: left upper central primary incisor tooth def: "A upper central primary incisor tooth that is in the left side of the upper jaw region." [] synonym: "ADA tooth F" EXACT [] synonym: "FDI tooth 61" EXACT [] synonym: "left upper central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84221] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018593 ! upper central primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490047 name: left lower second primary molar tooth def: "A lower second primary molar tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth K" EXACT [] synonym: "FDI tooth 75" EXACT [] synonym: "left lower second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84245] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018600 ! lower second primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490048 name: left lower first primary molar tooth def: "A lower first primary molar tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth L" EXACT [] synonym: "FDI tooth 74" EXACT [] synonym: "left lower first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84243] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018589 ! lower first primary molar tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490049 name: left lower primary canine tooth def: "A lower primary canine tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth M" EXACT [] synonym: "FDI tooth 73" EXACT [] synonym: "left lower primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84233] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018598 ! lower primary canine tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490050 name: left lower lateral primary incisor tooth def: "A lower lateral primary incisor tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth N" EXACT [] synonym: "FDI tooth 72" EXACT [] synonym: "left lower lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84227] is_a: UBERON:0018596 ! lower lateral primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8490051 name: left lower central primary incisor tooth def: "A lower central primary incisor tooth that is in the left side of the lower jaw region." [] synonym: "ADA tooth O" EXACT [] synonym: "FDI tooth 71" EXACT [] synonym: "left lower central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84225] is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018595 ! lower central primary incisor tooth relationship: dc-contributor https://orcid.org/0000-0001-9625-1899 relationship: present_in_taxon NCBITaxon:9606 creation_date: 2022-11-18T00:00:00Z [Term] id: UBERON:8500000 name: cranial temporal line def: "A dorsally concave, laterally-directed line on either side of the skull that runs along the temporal fossa, starting from above the zygomatico-frontal suture. It bounds the anterodorsal part of the temporal fossa and its the attachment site to the temporalis muscle." [https://en.wikipedia.org/wiki/Parietal_bone, https://www.imaios.com/en/e-anatomy/anatomical-structure/temporal-line-1536895640, https://www.merriam-webster.com/medical/temporal%20line] is_a: UBERON:0006800 ! anatomical line relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 [Term] id: UBERON:8500001 name: euryon def: "An anatomical point on the most lateral point of the neurocranium." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:8500002 name: supraorbital foramen def: "A bony elongated opening located above the orbit and under the forehead." [https://en.wikipedia.org/wiki/Supraorbital_foramen] is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] id: UBERON:8500003 name: supraorbitale def: "An anatomical point on the median point of the line joining the aboral borders of the supraorbital foramen." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:8500002 ! supraorbital foramen [Term] id: UBERON:8500004 name: entorbitale def: "An anatomical point on the naso-medial indentation of the orbit that corresponds with the inner angle of the eye in the living animal." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001697 ! orbit of skull [Term] id: UBERON:8600000 name: lobular bronchiole def: "A conductive airway that branches into terminal bronchioles." [PMID:16543587, PMID:27611890] subset: human_reference_atlas synonym: "preterminal bronchiole" EXACT [PMID:16543587] is_a: UBERON:0002186 ! bronchiole relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-02-08T13:31:12Z" xsd:dateTime [Term] id: UBERON:8600001 name: epithelium of lobular bronchiole def: "An epithelium of the lobular bronchiole." [FMA:62497] synonym: "epithelium of preterminal bronchiole" EXACT [PMID:16543587] synonym: "lobular bronchiole epithelium" EXACT [FMA:62497] is_a: UBERON:0002051 ! epithelium of bronchiole relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600000 ! lobular bronchiole property_value: dcterms-date "2023-02-10T14:26:09Z" xsd:dateTime [Term] id: UBERON:8600002 name: mucosa of lobular bronchiole def: "A mucosa that is part of a lobular bronchiole." [FMA:263230] is_a: UBERON:0005039 ! mucosa of bronchiole relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600000 ! lobular bronchiole property_value: dcterms-date "2023-02-10T14:48:35Z" xsd:dateTime [Term] id: UBERON:8600003 name: smooth muscle tissue of lobular bronchiole def: "A smooth muscle tissue that is part of a lobular bronchiole." [FMA:261081] is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600000 ! lobular bronchiole property_value: dcterms-date "2023-02-10T14:54:06Z" xsd:dateTime [Term] id: UBERON:8600004 name: visceral muscle tissue def: "A muscle tissue that is associated with soft internal organs (viscera)." [BTO:0002780, CLAO:0001295] comment: It is quite common to refer to visceral muscles as smooth muscles, by analogy with vertebrates; however, most visceral muscles in arthropods are actually striated. {xref="https://en.wikipedia.org/wiki/Smooth_muscle", xref="FBbt:00005070", comment="PMID:8720463"} synonym: "visceral muscle" EXACT [] {comment="BTO:0002780"} is_a: UBERON:0002385 ! muscle tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-02-16T10:17:46Z" xsd:dateTime [Term] id: UBERON:8600005 name: visceral smooth muscle tissue def: "A smooth muscle tissue that is associated with soft internal organs (viscera)." [PMID:12132390, PMID:33729000] synonym: "smooth musculature of viscera" EXACT [PMID:12132390] synonym: "visceral smooth muscle" EXACT [PMID:12132390] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:8600004 ! visceral muscle tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-02-16T10:32:12Z" xsd:dateTime [Term] id: UBERON:8600006 name: visceral striated muscle tissue def: "A striated muscle tissue that is associated with soft internal organs (viscera)." [https://pressbooks.pub/rbtallitsch/chapter/chapter-6-muscle-tissue/, PMID:8720463] synonym: "striated visceral muscle tissue" EXACT [] is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:8600004 ! visceral muscle tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-02-16T10:34:43Z" xsd:dateTime [Term] id: UBERON:8600007 name: visceral transversely striated muscle tissue def: "A striated visceral muscle tissue that has a transverse striation." [PMID:8720463] synonym: "transversely striated visceral muscle tissue" EXACT [] is_a: UBERON:8600006 ! visceral striated muscle tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-02-16T10:54:01Z" xsd:dateTime [Term] id: UBERON:8600008 name: visceral obliquely striated muscle tissue def: "A striated visceral muscle tissue that has an oblique striation." [PMID:8720463, PMID:872199] is_a: UBERON:8600006 ! visceral striated muscle tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-02-21T09:26:41Z" xsd:dateTime [Term] id: UBERON:8600009 name: subsegmental bronchus def: "Branch of conducting airway between a segmental bronchus and a preterminal bronchiole." [ISBN:0781785898, ISBN:9780702077050, Wikipedia:Bronchus] comment: Like other bronchi, the walls of a subsegmental bronchus contain plates of cartilage. Notably, the cartilage plates become smaller and more widely dispersed with each branching. {xref="https://doi.org/10.1016/B978-0-12-381361-9.00009-3", xref="PMID:14913504"} subset: human_reference_atlas synonym: "intrasegmental bronchus" RELATED [https://doi.org/10.1016/B978-0-12-381361-9.00009-3] is_a: UBERON:0035767 ! intrapulmonary bronchus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 relationship: part_of UBERON:8600017 ! bronchopulmonary segment relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-03-14T14:54:15Z" xsd:dateTime [Term] id: UBERON:8600010 name: bronchial submucosal gland ciliated duct def: "A ciliated duct part of a bronchial submucosal gland." [PMID:30864819] subset: human_reference_atlas is_a: UBERON:8600014 ! submucosal gland ciliated duct relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 relationship: part_of UBERON:8410043 ! bronchus submucosal gland relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-05-02T08:07:56Z" xsd:dateTime [Term] id: UBERON:8600011 name: tracheal submucosal gland ciliated duct def: "A ciliated duct part of a tracheal submucosal gland." [PMID:30864819] subset: human_reference_atlas is_a: UBERON:8600014 ! submucosal gland ciliated duct relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 relationship: part_of UBERON:0005203 ! trachea gland relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-05-02T08:08:14Z" xsd:dateTime [Term] id: UBERON:8600012 name: submucosal gland acinus def: "A spherical or tubular structure in a submucosal gland that produces and secretes mucus and other substances into the ducts leading to the surface epithelium." [PMID:17394068, PMID:17707699, PMID:25648514, PMID:30864819] subset: human_reference_atlas is_a: UBERON:0014717 ! mucous acinus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0011148 ! submucosal gland relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-05-02T08:57:27Z" xsd:dateTime [Term] id: UBERON:8600013 name: submucosal gland collecting duct def: "A non-secretory tubular structure in the submucosal gland where secretions are collected before flowing towards the surface epithelium." [PMID:10520827, PMID:17707699, PMID:25648514, PMID:30864819] subset: human_reference_atlas is_a: UBERON:0000058 ! duct relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0011148 ! submucosal gland relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-05-02T08:08:59Z" xsd:dateTime [Term] id: UBERON:8600014 name: submucosal gland ciliated duct def: "A ciliated tubular structure in a submucosal gland connecting the submucosal gland collecting duct with the surface epithelium." [PMID:17707699, PMID:30864819] is_a: UBERON:0000058 ! duct relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0011148 ! submucosal gland property_value: dcterms-date "2023-05-02T08:09:14Z" xsd:dateTime [Term] id: UBERON:8600015 name: posterior sector of right lobe of liver def: "The posterior sector of the right lobe of the liver." [PMID:30992874] synonym: "lateral sector of right lobe of liver" EXACT [PMID:24453062] synonym: "liver right lateral lobe" RELATED [https://orcid.org/0000-0002-6443-9376] synonym: "right hepatic posterior sector" EXACT [PMID:30487943] is_a: UBERON:0001062 ! anatomical entity relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0002-6443-9376 relationship: part_of UBERON:0001114 ! right lobe of liver property_value: dcterms-date "2023-05-15T10:46:34Z" xsd:dateTime [Term] id: UBERON:8600016 name: anterior sector of right lobe of liver def: "The anterior sector of the right lobe of the liver." [PMID:30992874] synonym: "liver right medial lobe" RELATED [https://orcid.org/0000-0002-6443-9376] synonym: "medial sector of right lobe of liver" EXACT [PMID:24453062] synonym: "right hepatic anterior sector" EXACT [PMID:30487943] is_a: UBERON:0001062 ! anatomical entity relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001114 ! right lobe of liver property_value: dcterms-date "2023-05-15T10:52:39Z" xsd:dateTime [Term] id: UBERON:8600017 name: bronchopulmonary segment def: "A discrete anatomical unit of the lung that is composed of a segmental bronchus and the lung tissue supplied by that bronchus. A bronchopulmonary segment exhibits a pyramidal shape, with its apex pointing towards the center of the lung and its base toward the pleural surface." [doi:10.1016/j.mpaic.2008.09.022, FMA:7312, PMID:18271171, PMID:33620799] comment: A bronchopulmonary segment is surrounded by connective tissue septa, which are continuous with the pleural surface and prevent air collateralization between segments somewhat. In humans, the right lung has ten bronchopulmonary segments and eight or nine bronchopulmonary segments in the left lung. {xref="doi:10.1016/j.mpaic.2008.09.022", xref="PMID:18271171"} subset: human_reference_atlas synonym: "lung segment" EXACT [PMID:33620799] is_a: UBERON:0000063 ! organ subunit relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 relationship: part_of UBERON:0000101 ! lobe of lung relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-07-20T12:43:29Z" xsd:dateTime [Term] id: UBERON:8600018 name: neuroendocrine system def: "A regulatory system of the body that integrates the nervous system and the endocrine system. This system is formed by specialized neuroendocrine cells located mainly in the nervous system and neuroendocrine glands. However, they can also be found as either single cells or small clusters of cells dispersed throughout the surface epithelium of different tissues. The neuroendocrine system functions through the release of neurotransmitters and neurohormones, enabling communication between the endocrine and nervous systems to govern vitally important processes that include growth, reproduction, metabolism and energy homeostasis, electrolyte and water balance, and responses to stress." [doi:10.1016/B978-0-12-375097-6.10001-0, PMID:15481802, PMID:17003257, PMID:25905254, Wikipedia:endocrinology] comment: In vertebrates, the hypothalamic-pituitary-target organ axis (H-P axis), the autonomic nervous system (ANS) and the diffuse neuroendocrine or APUD system contribute to the neuroendocrine system. {xref="PMID:15481802"} synonym: "NES" RELATED OMO:0003000 [PMID:15481802] is_a: UBERON:0000467 ! anatomical system relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-08-29T10:49:45Z" xsd:dateTime [Term] id: UBERON:8600019 name: placental basal plate def: "A maternal facing structure of the placental disc, adjacent to the intervillous space. Major components of the placental basal plate include decidua basalis, fibrinoid, connective tissue, extravillous trophoblasts, and residues of degenerating villi and maternal vessels." [PMID:17059842, PMID:32108320] subset: human_reference_atlas synonym: "PBP" RELATED OMO:0003000 [PMID:31002314] synonym: "placenta basal plate" EXACT [PMID:32108320] is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600038 ! placental disc relationship: present_in_taxon NCBITaxon:9443 {xref="PMID:31002314"} relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-09-14T08:19:13Z" xsd:dateTime [Term] id: UBERON:8600020 name: placental septum def: "An extension of the basal plate that protrudes into the intervillous space, creating a system of grooves which delimit elevated areas, also known as cotyledons or maternal lobes." [doi:10.1007/978-3-030-84725-8, PMID:32108320] subset: human_reference_atlas synonym: "placenta septum" EXACT [PMID:35190336] synonym: "placental septa" RELATED OMO:0003004 [doi:10.1007/BF00406305] is_a: UBERON:0003037 ! septum relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600019 ! placental basal plate relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-09-14T08:59:34Z" xsd:dateTime [Term] id: UBERON:8600021 name: chorionic plate blood vessel def: "A blood vessel that is part of the chorionic plate." [https://www.ncbi.nlm.nih.gov/books/NBK53254/] subset: human_reference_atlas is_a: UBERON:0022358 ! placenta blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0004027 ! chorionic plate relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-09-14T09:09:36Z" xsd:dateTime [Term] id: UBERON:8600022 name: pulmonary interlobular septum def: "A septum that surrounds and gives shape to the secondary pulmonary lobules, it is composed of connective tissue within which run the pulmonary veins and lymphatic vessels." [doi:10.53347/rID-8764, PMID:22283705, PMID:3259815] subset: human_reference_atlas synonym: "interlobular interstitium" RELATED [doi:10.53347/rID-8764] synonym: "interlobular septa" BROAD OMO:0003004 [PMID:3259815] synonym: "interlobular septum" BROAD [doi:10.53347/rID-8764] is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003037 ! septum relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-10-23T08:52:12Z" xsd:dateTime [Term] id: UBERON:8600023 name: placental villous stroma def: "A stroma that is part of a chorionic villus (placental villus). A placental villous stroma supports the fetal capillaries and villous trophoblast." [PMID:31512233] synonym: "chorionic villous stroma" EXACT [PMID:12624135] synonym: "CVS" RELATED OMO:0003000 [PMID:12624135] is_a: UBERON:0003891 ! stroma relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: part_of UBERON:0007106 ! chorionic villus property_value: dcterms-date "2023-07-04T10:46:17Z" xsd:dateTime [Term] id: UBERON:8600024 name: pulmonary venule def: "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that runs in the pulmonary interlobular septa." [PMID:22283705, PMID:30247823] is_a: UBERON:0003494 ! respiratory system venule is_a: UBERON:0003512 ! lung blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0013127 ! pulmonary venous system property_value: dcterms-date "2023-10-24T11:26:27Z" xsd:dateTime [Term] id: UBERON:8600025 name: intervillous space def: "An anatomical space that separates the basal plate and the chorionic plate. The intervillous space is filled with endometrial gland secretions during early stages of the pregnancy and later perfused with maternal blood, bathing the chorionic villous tree." [doi:10.1007/978-3-030-84725-8, PMID:32108320] is_a: UBERON:0012466 ! extraembryonic cavity relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600038 ! placental disc property_value: dcterms-date "2023-12-12T11:50:32Z" xsd:dateTime [Term] id: UBERON:8600026 name: chorionic villous tree def: "A tree-like structure formed by chorionic villi that sprouts from the chorionic plate in the placental disc. The arborous shape of the chorionic villous tree provides maximal contact area with maternal blood in the intervillous space." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas synonym: "placental villous tree" EXACT [PMID:9260835] synonym: "villous tree" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600038 ! placental disc relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-12-12T11:57:24Z" xsd:dateTime [Term] id: UBERON:8600027 name: chorionic stem villus def: "A chorionic villus that provides structural support to the villous tree. A chorionic stem villus is characterized by a condensed fibrous stroma in which fetal arteries, veins, arterioles, and venules are embedded. It represents a distributing framework for fetal chorionic circulation, supplying the floating villi. It can exhibit a diameter ranging from approximately 3000 μm (trunci near the chorionic plate) to 80 μm (smallest ramuli chorii)." [doi:10.1007/978-3-030-84725-8, PMID:9260835] subset: human_reference_atlas synonym: "placental stem villus" EXACT [PMID:9260835] is_a: UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: develops_from UBERON:8600029 ! chorionic immature intermediate villus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-12-12T13:00:59Z" xsd:dateTime [Term] id: UBERON:8600028 name: chorionic mesenchymal villus def: "The first generation of a tertiary villus that is derived from a syncytial sprout by the invasion of the mesenchyme, in which blood vessels differentiate through vasculogenesis, and gradually transforms into a new immature intermediate villus. A chorionic mesenchymal villus has a thick trophoblastic covering, and cytotrophoblast cells are interposed between syncytium and the trophoblastic basal lamina over 50â100% of the surface. The stroma is characterized by loosely arranged collagen fibers that enmesh mesenchymal and some villous macrophages. The fetal capillaries are poorly developed." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas synonym: "mesenchymal villus" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0009995 ! tertiary chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-12-12T13:38:12Z" xsd:dateTime [Term] id: UBERON:8600029 name: chorionic immature intermediate villus def: "A bulbous, immature chorionic villus that is formed of loose connective tissue with few fetal vessels. A chorionic immature intermediate villus develops from a chorionic mesenchymal villus, and is the forerunner of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8, PMID:487407, PMID:9260835] subset: human_reference_atlas synonym: "immature intermediate villus" RELATED [doi:10.1007/978-3-030-84725-8, PMID:21452443] is_a: UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: develops_from UBERON:8600028 ! chorionic mesenchymal villus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-12-12T13:41:05Z" xsd:dateTime [Term] id: UBERON:8600030 name: chorionic terminal villus def: "The most distal part of a chorionic villus. A chorionic terminal villus is a grape-like structure characterized by a high degree of capillarization and highly dilated sinusoids. A terminal villus has less stroma and a discontinuous cytotrophoblast layer, and contains 4â6 fetal capillaries per cross section. It exhibits a diameter ranging from 40 to about 80 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] subset: human_reference_atlas synonym: "terminal villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-12-12T13:41:16Z" xsd:dateTime [Term] id: UBERON:8600031 name: chorionic mature intermediate villus def: "A slender branch of a chorionic stem villus. A chorionic mature intermediate villus lacks fetal arterioles and venules in the stroma, which is composed of slender fetal capillaries embedded into a loose connective tissue that is rich in cells but poor in fibers. It exhibits a diameter ranging from 60 to about 100 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] subset: human_reference_atlas synonym: "mature intermediate villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2023-12-12T13:41:28Z" xsd:dateTime [Term] id: UBERON:8600032 name: chorionic floating villus def: "A chorionic villus that is not attached to the placental basal plate and it is immersed in maternal blood." [doi:10.1007/978-3-030-84725-8, PMID:31870762, PMID:32513715] synonym: "floating villus" BROAD [PMID:31870762] synonym: "free-floating villus" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-12-12T13:42:09Z" xsd:dateTime [Term] id: UBERON:8600033 name: chorionic anchoring villus def: "A distal smaller chorionic stem villus that is connected to the maternal side of the placenta (in early gestational stages to the decidua, and later to the developing basal plate) via a cytotrophoblast cell column. A chorionic anchoring villus stabilizes the position of the villous tree in the maternal intervillous bloodstream." [doi:10.1007/978-3-030-84725-8, PMID:15142834, PMID:32513715, PMID:9260835] synonym: "anchoring villus" BROAD [PMID:15142834] is_a: UBERON:8600027 ! chorionic stem villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-12-12T13:42:20Z" xsd:dateTime [Term] id: UBERON:8600034 name: jejunum lamina propria def: "A lamina propria that is part of a jejunum." [PMID:9394954] synonym: "jejunal lamina propria" EXACT [PMID:1556433] synonym: "lamina propria of jejunum" EXACT [PMID:22763879] is_a: UBERON:0001238 ! lamina propria of small intestine relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-8134-3037 relationship: part_of UBERON:0008343 ! intestinal villus of jejunum property_value: dcterms-date "2024-01-09T16:36:35Z" xsd:dateTime [Term] id: UBERON:8600035 name: ileum lamina propria def: "A lamina propria that is part of an ileum." [PMID:29316348] synonym: "ileal lamina propria" EXACT [PMID:37467267] synonym: "lamina propria of ileum" EXACT [PMID:36067905] is_a: UBERON:0001238 ! lamina propria of small intestine relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-8134-3037 relationship: part_of UBERON:0008344 ! intestinal villus of ileum property_value: dcterms-date "2024-01-09T16:48:17Z" xsd:dateTime [Term] id: UBERON:8600036 name: kidney loop of Henle long descending thin limb outer medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the outer medulla of the kidney." [PMID:33769951] subset: human_reference_atlas synonym: "DTL2" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the outer medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001293 ! outer medulla of kidney relationship: part_of UBERON:0005100 ! long descending thin limb relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-01-15T13:28:03Z" xsd:dateTime [Term] id: UBERON:8600037 name: kidney loop of Henle long descending thin limb inner medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the inner medulla of the kidney." [PMID:33769951] subset: human_reference_atlas synonym: "DTL3" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the inner medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001294 ! inner medulla of kidney relationship: part_of UBERON:0005100 ! long descending thin limb relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-01-15T13:32:25Z" xsd:dateTime [Term] id: UBERON:8600038 name: placental disc def: "A disc-shaped structure that is part of the placenta. A placental disc supports fetal development through the exchange of nutrients between maternal and fetal bloodstreams. The placental disc is structured to keep the blood streams separate, while maximizing surface area for the transport of nutrients between them, to maintain an immunological barrier." [PMID:35496035] subset: human_reference_atlas synonym: "placental disk" EXACT [PMID:30133439] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-01-16T17:50:20Z" xsd:dateTime [Term] id: UBERON:8600039 name: chorionic villous mesenchyme def: "A mesenchyme that is part of a chorionic villus." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003265 ! chorionic mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0007106 ! chorionic villus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-01-16T18:13:12Z" xsd:dateTime [Term] id: UBERON:8600040 name: chorionic stem villous blood vessel def: "A blood vessel that is part of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas synonym: "stem villous vessel" BROAD [PMID:7547738] is_a: UBERON:0022358 ! placenta blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600027 ! chorionic stem villus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-01-16T18:14:32Z" xsd:dateTime [Term] id: UBERON:8600041 name: chorionic terminal villous capillary def: "A capillary that is part of a chorionic terminal villus. This capillary is generally narrow, but displays sinusoidal dilations along its length, often at the points of acute bends. These dilations bring the capillary endothelium into close contact with the overlying syncytiotrophoblast to form a vasculosyncytial membrane." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas synonym: "terminal villous capillary" BROAD [PMID:22461195] is_a: UBERON:0001982 ! capillary is_a: UBERON:0022358 ! placenta blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600030 ! chorionic terminal villus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-01-16T18:16:47Z" xsd:dateTime [Term] id: UBERON:8600042 name: endometrial lymphatic vessel def: "A lymphatic vessel that is part of an endometrium." [PMID:23054374] subset: human_reference_atlas is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001295 ! endometrium relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-01-16T18:18:36Z" xsd:dateTime [Term] id: UBERON:8600043 name: lateral wall of urinary bladder def: "A wall of the urinary bladder that is situated on the sides or flanks." [PMID:30548115] xref: FMA:15905 is_a: UBERON:0001256 ! wall of urinary bladder relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X property_value: dcterms-date "2024-02-29T10:09:51Z" xsd:dateTime [Term] id: UBERON:8600044 name: left lateral wall of urinary bladder def: "A lateral wall of the urinary bladder that is located on the left side." [PMID:30548115] synonym: "left wall of bladder" BROAD [PMID:32233638] synonym: "left wall of urinary bladder" EXACT [FMA:15907] xref: FMA:15907 is_a: UBERON:8600043 ! lateral wall of urinary bladder relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X property_value: dcterms-date "2024-02-29T10:12:59Z" xsd:dateTime [Term] id: UBERON:8600045 name: right lateral wall of urinary bladder def: "A lateral wall of the urinary bladder that is located on the right side." [PMID:30548115] synonym: "right wall of bladder" BROAD [PMID:32233638] synonym: "right wall of urinary bladder" EXACT [FMA:15906] xref: FMA:15906 is_a: UBERON:8600043 ! lateral wall of urinary bladder relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X property_value: dcterms-date "2024-02-29T10:14:47Z" xsd:dateTime [Term] id: UBERON:8600046 name: anterior wall of urinary bladder def: "The most anterior wall of the urinary bladder." [doi:10.1007/978-3-642-71368-2_6, PMID:30548115] synonym: "anterior wall of bladder" BROAD [PMID:30548115] synonym: "bladder roof" RELATED [doi:10.1007/978-3-642-71368-2_6] xref: FMA:15903 is_a: UBERON:0001256 ! wall of urinary bladder relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X property_value: dcterms-date "2024-02-29T10:20:11Z" xsd:dateTime [Term] id: UBERON:8600047 name: posterior wall of urinary bladder def: "The most posterior wall of the urinary bladder." [PMID:30548115] synonym: "fundus" RELATED [doi:10.1007/978-3-642-71368-2_6] synonym: "posterior wall of bladder" BROAD [PMID:30548115] xref: FMA:15904 is_a: UBERON:0001256 ! wall of urinary bladder relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X property_value: dcterms-date "2024-02-29T10:22:52Z" xsd:dateTime [Term] id: UBERON:8600048 name: apex of urinary bladder def: "The anterior angle of the superior surface of the urinary bladder. The apex of urinary bladder is connected to the umbilicus by the urachus in embryos, and by the median umbilical ligament, a remnant of urachus, in adults." [doi:10.1016/j.mpsur.2013.04.013, doi:10.1016/j.mpsur.2016.04.001, PMID:31372192] synonym: "apex of bladder" BROAD [FMA:15914] synonym: "vertex of urinary bladder" EXACT [PMID:35986765] xref: FMA:15914 is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001255 ! urinary bladder property_value: dcterms-date "2024-02-29T10:29:33Z" xsd:dateTime [Term] id: UBERON:8600049 name: dome of urinary bladder def: "The anterosuperior surface of the urinary bladder, with boundaries at the apex and fundus of the urinary bladder." [doi:10.1016/j.mpsur.2016.04.001] xref: FMA:265241 is_a: UBERON:0006984 ! anatomical surface relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001255 ! urinary bladder property_value: dcterms-date "2024-02-29T10:39:28Z" xsd:dateTime [Term] id: UBERON:8600050 name: trophoblast island def: "An accumulation of extravillous trophoblast cells at the tip of a floating villus or occasionally attached to the chorionic plate embedded in fibrin." [doi:10.1007/978-3-030-84725-8] comment: A trophoblast island is directly continuous with villous cytotrophoblast in places where the villous syncytiotrophoblast is interrupted. {xref="doi:10.1007/978-3-030-84725-8"} synonym: "cell island" RELATED [doi:10.1007/978-3-030-84725-8] synonym: "intraplacental trophoblast island" EXACT [PMID:33218578] synonym: "trophoblastic cell island" EXACT [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime [Term] id: UBERON:8600051 name: segmental pulmonary vein def: "A vein that is tributary of the main pulmonary veins and drains oxygenated blood from a segment of the lung." [https://radiologykey.com/6-pulmonary-artery-and-vein/] xref: FMA:9411 is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600052 name: subsegmental pulmonary vein def: "A vein that is tributary of the segmental pulmonary veins and drains oxygenated blood from a subsegment of the lung." [https://radiologykey.com/6-pulmonary-artery-and-vein/] subset: human_reference_atlas xref: FMA:9413 is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600053 name: esophageal vein def: "A vein that is tributary of the azygos vein and drains blood from the esophagus." [wikipedia:Esophageal_veins] subset: human_reference_atlas xref: FMA:4748 is_a: UBERON:0001638 ! vein is_a: UBERON:0003502 ! neck blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600054 name: supreme intercostal vein def: "A vein that is tributary of the superior intercostal vein and drains the first intercostal space." [wikipedia:Supreme_intercostal_vein] subset: human_reference_atlas synonym: "first posterior intercostal vein" EXACT [FMA:4744] xref: FMA:4744 is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0016403 ! thoracic wall relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600055 name: atrioventricular nodal artery def: "An artery that branches from the right coronary artery and supplies the atrioventricular node." [wikipedia:Atrioventricular_nodal_branch] synonym: "atrioventricular node branch of right coronary artery" EXACT [FMA:3851] xref: FMA:3851 is_a: UBERON:0001637 ! artery is_a: UBERON:0003498 ! heart blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600056 name: lateral sacral vein def: "A vein that is tributary of the internal iliac vein and drains the anterior surface of the sacrum." [wikipedia:Lateral_sacral_veins] subset: human_reference_atlas xref: FMA:18905 is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600057 name: middle hemorrhoidal vein def: "A vein that is tributary of the internal iliac vein." [wikipedia:Middle_rectal_veins] subset: human_reference_atlas synonym: "middle rectal vein" EXACT [FMA:18893] xref: FMA:18893 is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001052 ! rectum relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600058 name: uterine vein def: "A vein that is tributary of the internal iliac vein and drains the uterus." [wikipedia:Uterine_veins] subset: human_reference_atlas xref: FMA:18896 is_a: UBERON:0001638 ! vein is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000995 ! uterus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600059 name: deep cervical vein def: "A vein that is tributary of a vertebral vein and drains the suboccipital region, adjacent vertebral column, and deep muscles of the neck." [wikipedia:Deep_cervical_vein] subset: human_reference_atlas xref: FMA:4746 is_a: UBERON:0001638 ! vein is_a: UBERON:0003502 ! neck blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600060 name: subsegmental pulmonary artery def: "An artery that is a branch of the segmental pulmonary artery and supplies deoxyge blood to a smaller subsegment of the lung." [PMID:30057869] subset: human_reference_atlas xref: FMA:9311 is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003512 ! lung blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600061 name: intra-acinar venule def: "A venule that receives drainage from the capillary beds after blood has perfused the pulmonary alveoli, and is tributary of the pulmonary venules." [PMID:20110543] subset: human_reference_atlas is_a: UBERON:8600024 ! pulmonary venule relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0008874 ! pulmonary acinus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600062 name: thyrocervical trunk def: "An artery that branches from the subclavian artery and supplies the thyroid gland, neck, and upper back regions." [wikipedia:Thyrocervical_trunk] subset: human_reference_atlas xref: FMA:3990 is_a: UBERON:0012320 ! cervical artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600063 name: septal perforating artery def: "An artery that branches from the left anterior descending artery and supplies the interventricular septum of the heart." [DOI:10.1067/mtc.2001.113604] subset: human_reference_atlas is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600064 name: posterolateral artery def: "An artery that branches from the right coronary artery or the circumflex artery and supplies the posterior and lateral walls of the left ventricle." [doi:10.53347/rID-35642] subset: human_reference_atlas is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600065 name: lateral femoral circumflex vein def: "A vein that is tributary of the femoral vein and drains blood from the front and middle areas of the thigh." [https://www.kenhub.com/en/library/anatomy/femoral-vein] subset: human_reference_atlas synonym: "set of lateral circumflex femoral veins" EXACT [FMA:70921] xref: FMA:70921 is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600066 name: basivertebral vein def: "A vein that is tributary of the anterior internal vertebral venous plexus and drains blood from the vertebral bodies." [doi:10.53347/rID-36991] subset: human_reference_atlas xref: FMA:321542 is_a: UBERON:0001638 ! vein is_a: UBERON:0004258 ! back blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002240 ! spinal cord relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600067 name: bronchial venule def: "A venule that is tributary of the bronchial veins and drains blood from the bronchi and bronchioles of the lungs." [wikipedia:Bronchial_veins] subset: human_reference_atlas is_a: UBERON:8600024 ! pulmonary venule relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600068 name: mental vein def: "A vein that is tributary of the facial vein and drains blood from the chin and lower lip." [doi:10.17354/ijss/2016/337] subset: human_reference_atlas is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600069 name: deep lingual vein def: "A vein that is tributary of the lingual vein and drains blood from the tongue." [wikipedia:Deep_lingual_vein] subset: human_reference_atlas xref: FMA:50830 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600070 name: dorsal lingual vein def: "A vein that is tributary of the lingual vein and drains blood from the dorsum of the tongue, and the sides of the tongue." [wikipedia:Dorsal_lingual_veins] subset: human_reference_atlas xref: FMA:50826 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600071 name: sublingual vein def: "A vein that is tributary of the lingual vein and drains blood from the ventral (inferior) surface of the tongue and the sublingual glands." [wikipedia:Sublingual_vein] subset: human_reference_atlas xref: FMA:50836 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600072 name: glandular venous plexus def: "A venous plexus tha connects the middle and superior thyroid veins." [https://www.anatomy.net/superior-thyroid-vein] subset: human_reference_atlas synonym: "thiroid venous plexus" EXACT [doi:10.53347/rID-70578] is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002046 ! thyroid gland relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600073 name: circumflex humeral vein def: "A vein that is tributary of the axillary vein and drains blood from the region around the neck of the humerus." [wikipedia:Axillary_vein] subset: human_reference_atlas is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001467 ! shoulder relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600074 name: thoracoacromial vein def: "A vein that is tributary of the axillary vein and drains blood from the thoracoacromial region, including the pectoral, shoulder, and clavicular regions." [wikipedia:Axillary_vein] subset: human_reference_atlas synonym: "thoraco-acromial vein" EXACT [FMA:23058] xref: FMA:23058 is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001467 ! shoulder relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600075 name: transverse cervical vein def: "A vein that is tributary of the external jugular vein and drains blood from the superficial muscles of the back, mainly the trapezius muscle." [wikipedia:Transverse_cervical_veins] subset: human_reference_atlas xref: FMA:50858 is_a: UBERON:0001638 ! vein is_a: UBERON:0003502 ! neck blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600076 name: suboccipital venous plexus def: "A venous plexus that is tributary of the deep cervical veins and drains blood from the suboccipital region." [doi:10.1227/01.neu.0000303217.53607.d9] subset: human_reference_atlas xref: FMA:50803 is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002240 ! spinal cord relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600077 name: pulmonary arteriole def: "An arteriole that branches from the pulmonary arteries and supplies deoxygenated blood to the pulmonary capillaries and alveolar capillaries of the lungs." [https://radiologykey.com/6-pulmonary-artery-and-vein/] subset: human_reference_atlas synonym: "set of all pulmonary arterioles" EXACT [FMA:279896] xref: FMA:279896 is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0010369 ! secondary pulmonary lobule relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0010369 ! secondary pulmonary lobule relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600078 name: ascending pharyngeal artery def: "An artery of the neck that branches from the external carotid artery and supplies the pharynx." [wikipedia:Ascending_pharyngeal_artery] subset: human_reference_atlas xref: FMA:49497 is_a: UBERON:0012320 ! cervical artery is_a: UBERON:0035398 ! branch of external carotid artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600079 name: dural artery def: "An artery that branches from the internal carotid artery and supplies the anterior clinoid process of the dura mater." [doi:10.1016/j.wneu.2018.12.071] subset: human_reference_atlas is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600080 name: pericardial artery def: "An artery that branches from the descending thoracic aorta and supplies the dorsal portion of the pericardium." [wikipedia:Descending_thoracic_aorta] subset: human_reference_atlas xref: FMA:69329 is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600081 name: percardiacophrenic artery def: "An artery that branches from the internal thoracic artery and supplies the pericardium and the diaphragm." [wikipedia:Pericardiacophrenic_artery] subset: human_reference_atlas synonym: "pericardiacophrenic artery" EXACT [FMA:3964] xref: FMA:3964 is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001103 ! diaphragm relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600082 name: superficial iliac circumflex vein def: "A vein that is tributary of the great saphenous vein and drains blood from the inguinal region and the anterior abdominal wall." [wikipedia:Great_saphenous_vein] subset: human_reference_atlas synonym: "superficial circumflex iliac vein" EXACT [FMA:44319] xref: FMA:44319 is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600083 name: fibular vein def: "A vein that is tributary of the posterior tibial vein and drains blood from the lateral compartment of the leg." [wikipedia:Fibular_veins] synonym: "set of peroneal veins" EXACT [FMA:71587] xref: FMA:71587 is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600084 name: prostatic venule def: "A venule that is tributary of the prostatic venous plexus and drains blood from the prostate gland." [https://www.kenhub.com/en/library/anatomy/prostatic-venous-plexus] subset: human_reference_atlas is_a: UBERON:0001979 ! venule is_a: UBERON:0003520 ! pelvis blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600085 name: hepatic portal venule def: "A venule that branches from the hepatic portal vein to transport nutrient-rich blood from the gastrointestinal tract and spleen to supply the liver. The hepatic portal venule is tributary of the hepatic sinusoids." [wikipedia:Liver_sinusoid] subset: human_reference_atlas is_a: UBERON:0001979 ! venule is_a: UBERON:0015796 ! liver blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0004647 ! liver lobule relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600086 name: incisor artery def: "An artery that branches from the inferior alveolar artery and supplies the roots and pulp of the teeth of the lower jaw. It forms anastomoses with its contralateral partner." [wikipedia:Inferior_alveolar_artery] subset: human_reference_atlas is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600087 name: external nasal vein def: "A vein that is tributary of the angular vein and drains blood from the superficial tissues and skin of the dorsum (bridge) and ala (wings) of the nose." [https://www.anatomy.net/angular-vein] subset: human_reference_atlas xref: FMA:50910 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600088 name: supratrochlear vein def: "A vein that is tributary of the angular vein and drains blood from the muscles and skin of the forehead." [wikipedia:Angular_vein] subset: human_reference_atlas xref: FMA:50898 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600089 name: transverse nasal root vein def: "A vein that is tributary of the angular veins and drains blood from the bridge of the nose." [https://plasticsurgerykey.com/veins-of-the-face-and-neck/] subset: human_reference_atlas is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000004 ! nose relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600090 name: hypophyseal vein def: "A vein that is tributary of the cavernous sinus and drains blood from the pituitary gland." [https://www.kenhub.com/en/library/anatomy/the-cavernous-sinus] subset: human_reference_atlas is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000007 ! pituitary gland relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600091 name: inferior anastomotic vein def: "A vein that is tributary of the transverse sinus and drains blood from the adjacent cortical regions of the temporal lobe. The inferior anastomotic vein forms an anastomosis (connection) between the superficial middle cerebral vein anteriorly and the transverse sinus posteriorly." [wikipedia:Inferior_anastomotic_vein] subset: human_reference_atlas xref: FMA:51239 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600092 name: radial vein def: "A vein that is tributary of the brachial vein and drains blood from the lateral structures of the forearm, carpal and metacarpal bones, joints of the hand, and lateral forearm muscles." [wikipedia:Radial_veins] subset: human_reference_atlas xref: FMA:22947 is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600093 name: ulnar vein def: "A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm." [wikipedia:Ulnar_veins] subset: human_reference_atlas xref: FMA:22950 is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600094 name: intra-acinar arteriole def: "An arteriole that branches from the pulmonary arteriole and supplies deoxygenated blood to the pulmonary capillaries in the alveoli of the lungs." [PMID:20110543] subset: human_reference_atlas is_a: UBERON:0003495 ! respiratory system arteriole is_a: UBERON:0003512 ! lung blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0008874 ! pulmonary acinus relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600095 name: ascending palatine artery def: "An artery that branches from the facial artery, and branches to supply the soft palate and the palatine tonsil." [wikipedia:Ascending_palatine_artery] subset: human_reference_atlas xref: FMA:49555 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600096 name: submental artery def: "An artery that branches from the facial artery that runs forward under the mouth, then turns upward upon reaching the chin." [wikipedia:Submental_artery] subset: human_reference_atlas xref: FMA:49561 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600097 name: deep lingual artery def: "An artery that branches from the lingual artery and supplies blood to the tongue itself, particularly the body and tip of the tongue. The deep lingual artery travels superiorly in a tortuous course along the under (ventral) surface of the tongue, below the longitudinalis inferior, and above the mucous membrane." [wikipedia:Lingual_artery] subset: human_reference_atlas synonym: "third part of lingual artery" EXACT [FMA:49532] xref: FMA:49532 is_a: UBERON:0001610 ! lingual artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600098 name: dorsal lingual artery def: "An artery that branches from the lingual artery and supplies the soft palate, tonsils, epiglottis, palatoglossal arch, and adjacent mucous membrane. The dorsal lingual artery runs along the upper border of the hyoid bone and anastomises with its fellow of the opposite side." [https://www.ncbi.nlm.nih.gov/books/NBK554513/] subset: human_reference_atlas xref: FMA:49546 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600099 name: accessory meningeal artery def: "An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion." [wikipedia:Accessory_meningeal_artery] subset: human_reference_atlas xref: FMA:79467 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600100 name: artery of pterygoid canal def: "An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull." [wikipedia:Artery_of_the_pterygoid_canal] subset: human_reference_atlas xref: FMA:85528 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600101 name: descending palatine artery def: "An artery that branches from the maxillary artery and supplies the hard and soft palate." [wikipedia:Descending_palatine_artery] subset: human_reference_atlas xref: FMA:49791 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600102 name: left anterior descending artery def: "An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart." [wikipedia:Left_anterior_descending_artery] subset: human_reference_atlas synonym: "anterior interventricular branch of left coronary artery" EXACT [FMA:3862] xref: FMA:3862 is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0035395 ! branch of left coronary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600103 name: anterior internal vertebral venous plexus def: "A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal." [wikipedia:Internal_vertebral_venous_plexuses] subset: human_reference_atlas xref: FMA:4869 is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002240 ! spinal cord relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600104 name: intervertebral vein def: "A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins" [https://www.kenhub.com/en/library/anatomy/veins-of-the-vertebral-column] subset: human_reference_atlas xref: FMA:76736 is_a: UBERON:0001638 ! vein is_a: UBERON:0004258 ! back blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002240 ! spinal cord relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600105 name: lumbar vein def: "A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region." [https://www.kenhub.com/en/library/anatomy/lumbar-veins] subset: human_reference_atlas synonym: "set of lumbar veins" EXACT [FMA:70889] xref: FMA:70889 is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: present_in_taxon NCBITaxon:9606 property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600106 name: anterior humeral circumflex artery def: "An artery that branches from the axilliary artery and supplies the deltoid, biceps brachii, and coracobrachialis muscles, the glenohumeral joint, the proximal humeral head, and the skin overlying the anterior aspect of the proximal humerus. This artery courses laterally across the anterior surface of the humerus and anastomoses with the posterior humeral circumflex artery." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/anterior-circumflex-humeral-artery/20091] xref: FMA:22680 is_a: UBERON:0001637 ! artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001467 ! shoulder property_value: dcterms-date "2024-08-20T09:53:48Z" xsd:string [Term] id: UBERON:8600107 name: posterior humeral circumflex artery def: "An artery that branches from the axilliary artery and supplies the deltoid, teres major, teres minor, and long and lateral heads of the triceps brachii muscles, glenohumeral joint, and the cutaneous supply to the area posterolateral to the proximal humerus. This artery courses posteriorly with the axillary nerve, through the quadrangular space, to the posterior aspect of the humerus and anastomoses with the anterior humeral circumflex artery." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/posterior-circumflex-humeral-artery/24676] xref: FMA:22684 is_a: UBERON:0001637 ! artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001467 ! shoulder property_value: dcterms-date "2024-08-20T09:53:48Z" xsd:string [Term] id: UBERON:8600108 name: proximal ureter def: "A segment of the ureter that extends from the renal pelvis to the common iliac artery bifurcation (to form the internal and external iliac arteries)." [PMID:30422575] synonym: "abdominal ureter" EXACT [PMID:30422575] synonym: "upper ureter" EXACT [PMID:30422575] xref: FMA:15882 is_a: UBERON:0006555 ! excretory tube relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0000056 ! ureter property_value: dcterms-date "2024-08-28T13:51:59Z" xsd:dateTime [Term] id: UBERON:8600109 name: distal ureter def: "A segment of the ureter that extends from the common iliac artery bifurcation to the bladder. From there, the ureter curves back and follows the lateral pelvic wall inferiorly to connect with the posterolateral bladder wall." [PMID:30422575] synonym: "lower ureter" EXACT [PMID:30422575] synonym: "pelvic ureter" EXACT [PMID:30422575] xref: FMA:15883 is_a: UBERON:0006555 ! excretory tube relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0000056 ! ureter property_value: dcterms-date "2024-08-28T14:15:03Z" xsd:dateTime [Term] id: UBERON:8600110 name: intramural ureter def: "The terminal segment of the ureter that is continuous with the distal ureter, lies where the ureter enters the bladder and extends within the bladder wall. The intramural ureter is aperistaltic, serving as a reflux-preventing mechanism, preventing the backflow of urine from the bladder into the ureters." [PMID:14142154, PMID:30422575] synonym: "intravesical ureter" EXACT [doi:10.53347/rID-23183, PMID:33085409] xref: FMA:77289 is_a: UBERON:0006555 ! excretory tube relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0000056 ! ureter property_value: dcterms-date "2024-08-28T14:39:53Z" xsd:dateTime [Term] id: UBERON:8600111 name: right distal ureter def: "A distal ureter that is part of the right ureter." [PMID:30422575] synonym: "right lower ureter" EXACT [PMID:30422575] synonym: "right pelvic ureter" EXACT [PMID:30422575] xref: FMA:15886 is_a: UBERON:8600109 ! distal ureter relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001222 ! right ureter property_value: dcterms-date "2024-08-28T15:12:29Z" xsd:dateTime [Term] id: UBERON:8600112 name: left distal ureter def: "A distal ureter that is part of the left ureter." [PMID:30422575] synonym: "left lower ureter" EXACT [PMID:30422575] synonym: "left pelvic ureter" EXACT [PMID:30422575] xref: FMA:15887 is_a: UBERON:8600109 ! distal ureter relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001223 ! left ureter property_value: dcterms-date "2024-08-28T15:15:32Z" xsd:dateTime [Term] id: UBERON:8600113 name: right proximal ureter def: "A proximal ureter that is part of the right ureter." [PMID:30422575] synonym: "right abdominal ureter" EXACT [PMID:30422575] synonym: "right upper ureter" EXACT [PMID:30422575] xref: FMA:15884 is_a: UBERON:8600108 ! proximal ureter relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001222 ! right ureter property_value: dcterms-date "2024-08-28T15:19:31Z" xsd:dateTime [Term] id: UBERON:8600114 name: left proximal ureter def: "A proximal ureter that is part of the left ureter." [PMID:30422575] synonym: "left abdominal ureter" EXACT [PMID:30422575] synonym: "left upper ureter" EXACT [PMID:30422575] xref: FMA:15885 is_a: UBERON:8600108 ! proximal ureter relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001223 ! left ureter property_value: dcterms-date "2024-08-28T15:19:51Z" xsd:dateTime [Term] id: UBERON:8600115 name: right intramural ureter def: "An intramural ureter that is part of the right ureter." [PMID:30422575] synonym: "right intravesical ureter" EXACT [doi:10.53347/rID-23183] is_a: UBERON:8600110 ! intramural ureter relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001222 ! right ureter property_value: dcterms-date "2024-08-28T16:10:44Z" xsd:dateTime [Term] id: UBERON:8600116 name: left intramural ureter def: "An intramural ureter that is part of the left ureter." [PMID:30422575] synonym: "left intravesical ureter" EXACT [doi:10.53347/rID-23183] is_a: UBERON:8600110 ! intramural ureter relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001223 ! left ureter property_value: dcterms-date "2024-08-28T16:10:50Z" xsd:dateTime [Term] id: UBERON:8600117 name: antimesosalpinx def: "A posterior free border of a mesosalpinx." [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] synonym: "anti-mesosalpinx" EXACT [doi:10.1101/2020.08.23.263772] synonym: "posterior free border of mesosalpinx" EXACT [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] synonym: "posterior free edge of mesosalpinx" EXACT [https://orcid.org/0000-0001-7655-4833] is_a: UBERON:0002095 ! mesentery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: part_of UBERON:0012331 ! mesosalpinx property_value: dcterms-date "2024-11-14T09:59:53Z" xsd:dateTime [Term] id: UBERON:8600118 name: myenteric ganglion def: "A ganglion that is part of a myenteric plexus. The myoenteric ganglion serves as a control center for local gut functions, such as motility." [ILX:0793734, PMID:31855386] synonym: "myenteric plexus ganglion" EXACT [ILX:0793735] xref: ILX:0793734 is_a: UBERON:0001805 ! autonomic ganglion relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002439 ! myenteric nerve plexus property_value: dcterms-date "2025-02-13T17:17:15Z" xsd:dateTime [Term] id: UBERON:8600119 name: myenteric ganglion of small intestine def: "A myenteric ganglion located in the myenteric plexus of the small intestine." [ILX:0793735] xref: ILX:0793735 is_a: UBERON:8600118 ! myenteric ganglion relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002108 ! small intestine property_value: dcterms-date "2025-02-13T17:20:16Z" xsd:dateTime [Term] id: UBERON:8600120 name: atrial intrinsic cardiac ganglion def: "A ganglion that is part of the atrial region of the heart. The activation of efferent neurons in this ganglion results in the modulation of heart rate, atrio-ventricular node conduction, and inotropism of atria and ventricles." [ILX:0793555, PMID:23559611, PMID:33255284] synonym: "atrial ganglionated plexus" RELATED [ILX:0793555] xref: ILX:0793555 is_a: UBERON:0007134 ! trunk ganglion is_a: UBERON:0014463 ! cardiac ganglion relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002081 ! cardiac atrium property_value: dcterms-date "2025-02-13T17:23:00Z" xsd:dateTime [Term] id: UBERON:8600121 name: lumbar ganglion def: "A ganglion that is part of the lumbar portion of the sympathetic trunk. The neurons in a lumbar ganglion are postganglionic sympathetic neurons that synapse with axons from preganglionic sympathetic neurons." [https://www.elsevier.com/resources/anatomy/nervous-system/peripheral-nervous-system/lumbar-ganglia/23245, PMID:30969736, PMID:33085353, wikipediaversioned:Lumbar_ganglia&oldid=1023349088] comment: In humans there are four lumbar ganglia and they are positioned anterolateral to the lumbar vertebrae and deep to the psoas major muscle. {xref="PMID:30969736", xref="wikipediaversioned:Lumbar_ganglia&oldid=1023349088"} synonym: "lumbar paravertebral ganglion" EXACT [FMA:6472] synonym: "lumbar sympathetic ganglion" EXACT [FMA:6472] xref: FMA:6472 is_a: UBERON:0001807 ! paravertebral ganglion is_a: UBERON:0009758 ! abdominal ganglion relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0005462 ! lower back property_value: dcterms-date "2025-02-13T17:25:41Z" xsd:dateTime [Term] id: UBERON:8600122 name: sacral ganglion def: "A ganglion that is part of the sacral portion of the sympathetic trunk. A sacral ganglion consists of postganglionic sympathetic neurons that receive presynaptic input from preganglionic sympathetic axons descending through the sympathetic trunk from thoracolumbar levels." [FMA:6473, https://www.elsevier.com/resources/anatomy/nervous-system/peripheral-nervous-system/sacral-ganglia/24872, PMID:33085353, wikipediaversioned:Sacral_ganglia&oldid=1222899024] synonym: "sacral sympathetic ganglion" EXACT [FMA:6473] xref: FMA:6473 is_a: UBERON:0001807 ! paravertebral ganglion is_a: UBERON:0009758 ! abdominal ganglion relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0005473 ! sacral region property_value: dcterms-date "2025-02-24T14:04:14Z" xsd:dateTime [Term] id: UBERON:8600123 name: lower airway ganglion def: "A parasympathetic ganglion that is located within the airway walls of the lower respiratory tract. This ganglion is responsible for controlling the constriction of the airway by stimulating smooth muscle contraction in the lower respiratory tract to regulate airflow." [doi:10.1016/B978-008045046-9.00635-5, ILX:0793573, PMID:35965034] synonym: "lower airway parasympathetic ganglion" EXACT [ILX:0793573] xref: ILX:0793573 is_a: UBERON:0001808 ! parasympathetic ganglion relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001558 ! lower respiratory tract property_value: dcterms-date "2025-02-24T14:15:29Z" xsd:dateTime [Term] id: UBERON:8600124 name: fallopian tube epithelium def: "A simple columnar epithelium that is part of the fallopian tube." [PMID:7714136, Wikipedia:Fallopian_tube] is_a: UBERON:0004804 ! oviduct epithelium is_a: UBERON:0012274 ! columnar epithelium relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 relationship: part_of UBERON:0003889 ! fallopian tube property_value: dcterms-date "2025-03-04T14:24:07Z" xsd:dateTime [Term] id: UBERON:8600125 name: superior fallopian tube epithelium def: "The superior region of the fallopian tube epithelium." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600124 ! fallopian tube epithelium property_value: dcterms-date "2025-03-04T14:25:21Z" xsd:dateTime [Term] id: UBERON:8600126 name: inferior fallopian tube epithelium def: "The inferior region of the fallopian tube epithelium." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600124 ! fallopian tube epithelium property_value: dcterms-date "2025-03-04T14:26:37Z" xsd:dateTime [Term] id: UBERON:8600127 name: mesosalpinx-proximal fallopian tube epithelium def: "The most proximal region to the mesosalpinx of the fallopian tube epithelium." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600124 ! fallopian tube epithelium property_value: dcterms-date "2025-03-04T14:27:25Z" xsd:dateTime [Term] id: UBERON:8600128 name: antimesosalpinx-proximal fallopian tube epithelium def: "The most proximal region to the antimesosalpinx of the fallopian tube epithelium." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600124 ! fallopian tube epithelium property_value: dcterms-date "2025-03-04T14:27:50Z" xsd:dateTime [Term] id: UBERON:8600129 name: corpus hemorrhagicum def: "A transient, mesoderm-derived structure in the ovary that forms immediately after the rupture of a mature ovarian follicle during ovulation. It is formed by bleeding of small blood vessels in the follicle wall as the follicle collapses, resulting in a blood-filled center that rapidly clots. This structure develops into the corpus luteum." [https://ohiostate.pressbooks.pub/vethisto/chapter/13-the-ovary/, PMID:34330986, wikipedia:Corpus_hemorrhagicum] synonym: "CH" RELATED OMO:0003000 [PMID:34330986] is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7941-2961 relationship: develops_from UBERON:0003982 ! mature ovarian follicle relationship: part_of UBERON:0000992 ! ovary property_value: dcterms-date "2025-05-27T08:38:48Z" xsd:dateTime [Term] id: UBERON:8600130 name: superior muscular layer of fallopian tube def: "The most superior region of the muscularis layer of the fallopian tube." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0006642 ! muscle layer of oviduct property_value: dcterms-date "2025-03-04T15:32:23Z" xsd:dateTime [Term] id: UBERON:8600131 name: inferior muscular layer of fallopian tube def: "The most inferior region of the muscularis layer of the fallopian tube." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0006642 ! muscle layer of oviduct property_value: dcterms-date "2025-03-04T15:32:52Z" xsd:dateTime [Term] id: UBERON:8600132 name: mesosalpinx-proximal muscular layer of fallopian tube def: "The most proximal region to the mesosalpinx of the muscularis layer of the fallopian tube." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0006642 ! muscle layer of oviduct property_value: dcterms-date "2025-03-04T15:33:06Z" xsd:dateTime [Term] id: UBERON:8600133 name: antimesosalpinx-proximal muscular layer of fallopian tube def: "The most proximal region to the antimesosalpinx of the muscularis layer of the fallopian tube." [https://orcid.org/0000-0001-6677-8489] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0006642 ! muscle layer of oviduct property_value: dcterms-date "2025-03-04T15:33:17Z" xsd:dateTime [Term] id: UBERON:8600134 name: ascending colon lamina propria def: "The lamina propria that underlies the epithelial lining of the ascending colon." [https://orcid.org/0000-0003-4389-9821] synonym: "ascending colonic lamina propria" EXACT [] synonym: "lamina propria of ascending colon" EXACT [] is_a: UBERON:0011189 ! lamina propria of large intestine relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001156 ! ascending colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8600135 name: descending colon lamina propria def: "The lamina propria that underlies the epithelial lining of the descending colon." [https://orcid.org/0000-0003-4389-9821] synonym: "descending colonic lamina propria" EXACT [] synonym: "lamina propria of descending colon" EXACT [] is_a: UBERON:0011189 ! lamina propria of large intestine relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001158 ! descending colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8600136 name: sigmoid colon lamina propria def: "The lamina propria that underlies the epithelial lining of the sigmoid colon." [https://orcid.org/0000-0003-4389-98219] synonym: "lamina propria of sigmoid colon" EXACT [] synonym: "sigmoid colonic lamina propria" EXACT [] is_a: UBERON:0011189 ! lamina propria of large intestine relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001159 ! sigmoid colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8600137 name: transverse colon lamina propria def: "The lamina propria that underlies the epithelial lining of the transverse colon." [https://orcid.org/0000-0003-4389-9821] synonym: "lamina propria of transverse colon" EXACT [] synonym: "transverse colonic lamina propria" EXACT [] is_a: UBERON:0011189 ! lamina propria of large intestine relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001157 ! transverse colon property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8600138 name: stomach lamina propria def: "The lamina propria that underlies the epithelial lining of the stomach." [https://orcid.org/0000-0003-4389-9821] synonym: "gastric lamina propria" EXACT [] synonym: "lamina propria of stomach" EXACT [] is_a: UBERON:0004780 ! gastrointestinal system lamina propria relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0000945 ! stomach property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8600139 name: caecum lamina propria def: "The lamina propria that underlies the epithelial lining of the caecum." [https://orcid.org/0000-0003-4389-9821] synonym: "cecal lamina propria" EXACT [] synonym: "cecum lamina propria" EXACT [] synonym: "lamina propria of caecum" EXACT [] synonym: "lamina propria of cecum" EXACT [] is_a: UBERON:0011189 ! lamina propria of large intestine relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001153 ! caecum property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8600140 name: rectum lamina propria def: "The lamina propria that underlies the epithelial lining of the rectum." [https://orcid.org/0000-0003-4389-9821] synonym: "lamina propria of rectum" EXACT [] synonym: "rectal lamina propria" EXACT [] is_a: UBERON:0011189 ! lamina propria of large intestine relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0001052 ! rectum property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime [Term] id: UBERON:8700000 name: aorta-gonad-mesonephros def: "A transient organ in the developing embryo composed of the dorsal aorta, developing gonads, and embryonic kidney. This structure is located in the embryonic mesoderm and serves as the primary site for the generation of definitive hematopoietic stem cells." [PMID:25686881, PMID:25749005, PMID:31813624] is_a: UBERON:0002050 ! embryonic structure relationship: dc-contributor https://orcid.org/0009-0005-7919-4905 property_value: dcterms-date "2024-10-25T08:42:34Z" xsd:dateTime [Term] id: UBERON:8700001 name: follicle associated epithelium def: "A specialized epithelial layer overlying the luminal surface of lymphoid follicles in gut-associated lymphoid tissue. It is found in Peyer's patches of the small intestine and appendix in humans and in the intestine and caecal patches in mice. This layer contains specialised M cells and has fewer goblet cells compared to surrounding tissue. This layer plays a crucial role in mucosal immune surveillance." [DOI:10.1007/s00702-022-02561-x, DOI:10.4061/2010/823710] synonym: "FAE" EXACT [DOI:10.1007/s00702-022-02561-x] is_a: UBERON:0004693 ! Peyer's patch epithelium relationship: dc-contributor https://orcid.org/0009-0005-7919-4905 property_value: dcterms-date "2024-11-07T11:44:27Z" xsd:dateTime [Term] id: UBERON:8700002 name: stratum spinosum of esophageal epithelium def: "The second deepest layer of the stratified squamous epithelium lining the esophagus, positioned directly above the stratum basale. It consists of multiple layers of keratinocytes connected by strong intercellular junctions called desmosomes, giving the cells a characteristic \"spiny\" appearance. This layer provides structural support, contributes to the epithelial barrier function, and serves as a transitional zone for keratinocytes migrating towards the luminal surface, playing a crucial role in maintaining the integrity and protective properties of the esophageal lining." [PMID:21126700, PMID:26019440] is_a: UBERON:0006920 ! esophagus squamous epithelium is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium relationship: dc-contributor https://orcid.org/0009-0005-7919-4905 property_value: dcterms-date "2024-11-14T15:00:21Z" xsd:dateTime [Term] id: UBERON:8850000 name: lumen of pulmonary alveolus def: "An anatomical cavity that is part of the alveolus of the lung" [PMID:30390118] synonym: "alveolar lumen" BROAD [PMID:30390118] synonym: "cavity of pulmonary alveolus" EXACT [FMA:62779] synonym: "lumen of alveolus" BROAD [PMID:33806395] synonym: "pulmonary alveolar cavity" EXACT [FMA:62779] xref: FMA:62779 is_a: UBERON:0002553 ! anatomical cavity relationship: dc-contributor https://orcid.org/0009-0000-8480-9277 property_value: dcterms-date "2024-06-28T10:50:18Z" xsd:dateTime [Term] id: UBERON:8900000 name: sensory corpuscle def: "A mechanosensory complex in the terminal end of some nerves that forms a corpuscle. It consists of one or more neuronal terminations and associated non-neuronal cells." [PMID:35356056] synonym: "COEC" RELATED OMO:0003000 [PMID:35356056] synonym: "cutaneous end-organ complex" EXACT [PMID:35356056] xref: http://www.wikidata.org/entity/Q126363978 is_a: UBERON:0012449 ! mechanoreceptor relationship: dc-contributor https://orcid.org/0000-0003-2473-2313 property_value: dcterms-date "2024-06-12T13:51:05Z" xsd:string [Term] id: UBERON:8910000 name: stomatogastric nervous system def: "The part of the nervous system that controls the stomach, such as in crabs, lobsters, and flies" [DOI:10.1016/B0-12-370878-8/00177-4, FlyBase:FBrf0089570, PMID:12966498, PMID:27450880] is_a: UBERON:0011216 ! organ system subdivision relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 [Term] id: UBERON:8910001 name: stomatogastric ganglion def: "The stomatogastric ganglion (STG) consists of about 30 neurons that form two central pattern generator circuits in crustaceans. STG neurons have large soma (~50-100 um) and have complex branches. The STG contains the motor neurons that innervate the striated muscles that move the gastric mill and pyloric regions of the stomach." [PMID:17009928] synonym: "STG" RELATED OMO:0003000 [PMID:17009928] is_a: UBERON:0011216 ! organ system subdivision relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910010 name: stomatogastric nerve (sensu Cancer borealis) def: "The stomatogastric nerve (SGN) is made up of four separate nerves that emerge from the paired commissural ganglia, the superior and inferior esophageal nerves (SONs and IONs)." [DOI:10.1016/B0-12-370878-8/00177-4] synonym: "SGN (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910011 name: dorsal gastric nerve (sensu Cancer borealis) def: "Nerve carrying dorsal gastric (DG) neurons which control the medial tooth movements in crustaceans." [PMID:17009928] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910012 name: gastropyloric nerve (sensu Cancer borealis) def: "Consists of gastropyloric receptor (GPR) neurons, which are stretch receptors that innervate stomach muscles in crustaceans." [PMID:17009928, PMID:26888106] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910013 name: lateral gastric nerve (sensu Cancer borealis) def: "Consists of lateral gastric (LG) neurons. The alternation between the lateral gastric neurons/medial gastric neurons and the lateral posterior gastric neurons control the movements of the lateral teeth in crustaceans." [PMID:17009928] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910014 name: lateral ventricular nerve (sensu Cancer borealis) def: "The motor axons that project into the dorsal ventricular nerve bifurcate and then project into both lateral ventricular nerves." [PMID:10561445] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910015 name: pyloric nerve (sensu Cancer borealis) def: "Innervates pyloric region of the stomach." [PMID:2876096] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910016 name: pyloric dilator nerve (sensu Cancer borealis) def: "Innervates muscles that dilate valves of the pylorus motor neurons involved in filtering in crustaceans. Anterior burster neurons are intrinsic oscillators that are electrically coupled with pyloric dilator neurons, causing them to fire bursts of action potentials. Together these neurons inhibit lateral pyloric and pyloric neurons, forcing them to fire in alternation with the pyloric dilator neurons." [PMID:17009928, PMID:2876096] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910017 name: inferior esophageal nerve (sensu Cancer borealis) def: "The inferior esophageal nerve (ION) is one of the four nerves that make up the stomatogastric nerve (SGN)." [DOI:10.1016/B0-12-370878-8/00177-4] synonym: "ION (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910010 ! stomatogastric nerve (sensu Cancer borealis) [Term] id: UBERON:8910018 name: superior esophageal nerve (sensu Cancer borealis) def: "The superior esophageal nerve (SON) is one of the four nerves that make up the stomatogastric nerve (SGN)." [DOI:10.1016/B0-12-370878-8/00177-4] synonym: "SON (sensu Cancer borealis)" EXACT [DOI:10.1016/B0-12-370878-8/00177-4] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910010 ! stomatogastric nerve (sensu Cancer borealis) [Term] id: UBERON:8910019 name: esophageal nerve (sensu Cancer borealis) def: "innervates the foregut and midgut" [DOI:10.1016/B0-12-370878-8/00177-4] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910010 ! stomatogastric nerve (sensu Cancer borealis) [Term] id: UBERON:8910020 name: esophageal ganglion (sensu Cancer borealis) def: "Neurons with cell bodies in the esophageal ganglion turn on the gastric mill rhythm and strongly affects the pyloric rhythm." [DOI:10.1016/B0-12-370878-8/00177-4] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910021 name: commissural ganglion (sensu Cancer borealis) def: "Contains motor fibers that innervate the esophagus. Stimulating the pyloric suppressor neuron alters both pyloric and gastric rhythms but also elicits activity in a third oscillatory circuit located in the commissural ganglia called the esophageal rhythm." [DOI:10.1016/b978-0-12-809324-5.21166-8] synonym: "CG (sensu Cancer borealis)" EXACT [DOI:10.1016/b978-0-12-809324-5.21166-8] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910022 name: junction of superior esophageal nerve and stomatogastric nerve (sensu Cancer borealis) def: "The junction between the stomatogastric nerve (STN) and the superior esophageal nerve (SON) shows synaptic structures. Octopamine may be released at this site by projection neurons; its application at this junction induces action potentials in the axons of the modulatory commissural neuron 5 (MCN5) that project from the commissural ganglia to the stomatogastric ganglion (STG)." [PMID:15306640] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910023 name: median ventricular nerve (sensu Cancer borealis) def: "Most of the efferent fibers leaving the stomatogastric ganglion and leading to the gastric mill or pyloric stomach muscles run posteriorly in the dorsal median ventricular nerve. This nerve branches bilaterally into the right and left lateral ventricular nerves (LVN) which go to their respective sides of the stomach." [DOI:10.1016/0010-406X(70)90044-7] synonym: "MVN (sensu Cancer borealis)" EXACT [DOI:10.1016/0010-406X(70)90044-7] is_a: UBERON:0035014 ! functional part of brain relationship: dc-contributor https://orcid.org/0000-0002-1909-7004 relationship: part_of UBERON:8910000 ! stomatogastric nervous system [Term] id: UBERON:8910024 name: airway hillock def: "A region of squamous epithelium found in the tracheobronchial tree - continuous with the tracheobronchial epithelium." [DOI:10.1038/s41586-024-07377-1] is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0008397 ! tracheobronchial epithelium [Term] id: UBERON:8920000 name: anterior ciliary artery def: "An artery that branches from the ophthalmic artery and supplies the anterior segment of the eyeball and ciliary body." [PMID:30725748, wikipedia:Anterior_ciliary_arteries] xref: FMA:49962 is_a: UBERON:0001637 ! artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 relationship: part_of UBERON:0000970 ! eye property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920001 name: short posterior ciliary artery def: "An artery that branches from the ophthalmic artery and supplies the choroid and ciliary processes." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/short-posterior-ciliary-arteries-left/16689, wikipedia:Short_posterior_ciliary_arteries] synonym: "Set of short posterior ciliary arteries" EXACT [FMA:70777] synonym: "Short posterior ciliary arteries" EXACT [FMA:70777] xref: FMA:70777 is_a: UBERON:0001637 ! artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 relationship: part_of UBERON:0000970 ! eye property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920002 name: long posterior ciliary artery def: "An artery that branches from the ophthalmic artery and supplies the choroid, ciliary body and iris." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/long-posterior-ciliary-arteries-right/23957, wikipedia:Long_posterior_ciliary_arteries] synonym: "Long posterior ciliary arteries" EXACT [FMA:70778] synonym: "Set of long posterior ciliary arteries" EXACT [FMA:70778] xref: FMA:70778 is_a: UBERON:0001637 ! artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 relationship: part_of UBERON:0000970 ! eye property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920003 name: right marginal artery def: "An artery that is a branch of the right coronary artery. It follows the acute margin of the heart supplying blood to the right ventricle." [wikipedia:Right_marginal_branch_of_right_coronary_artery] synonym: "Marginal branch of right coronary artery" EXACT [FMA:3818] xref: FMA:3818 is_a: UBERON:0001637 ! artery is_a: UBERON:0003498 ! heart blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920004 name: segmental renal artery def: "An artery that branches from the renal artery. The anterior division of the renal artery typically divides into four segmental arteries, whereas the posterior division of the renal artery supplies one segmental artery." [doi:10.1148/rg.2021200162, https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/arteries-of-kidneys/23888, wikipedia:Renal_circulation] xref: FMA:70494 is_a: UBERON:0001184 ! renal artery is_a: UBERON:0003644 ! kidney arterial blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920005 name: superior segmental renal artery def: "A segmental renal artery that passes anterior to the renal pelvis, superiorly and laterally. It supplies the superior (apical) lobe of the kidney." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/superior-segmental-artery-of-kidney/17005, wikipedia:Renal_circulation] xref: FMA:70499 is_a: UBERON:0009885 ! interlobar artery is_a: UBERON:8920004 ! segmental renal artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920006 name: anterior superior segmental renal artery def: "A segmental renal artery that passes anterior to the renal pelvis, superiorly and laterally towards the superior pole of the kidney. It does not ascend as steeply as the superior segmental artery and does not extend into the superior pole. It supplies the anterosuperior lobe of the kidney, which includes the central anterosuperior region, extending to the lateral aspect and slightly onto the posterior surface of the kidney." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/anterior-superior-segmental-artery-of-kidney-left/19263, wikipedia:Renal_circulation] xref: FMA:70500 is_a: UBERON:0009885 ! interlobar artery is_a: UBERON:8920004 ! segmental renal artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920007 name: anterior inferior segmental renal artery def: "A segmental renal artery that passes anterior to the renal pelvis, laterally and angled slightly inferiorly. It supplies the anteroinferior lobe of the kidney, which includes the central anteroinferior region, extending to the lateral aspect and slightly onto the posterior surface of the kidney." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/anterior-inferior-segmental-artery-of-kidney/19008, wikipedia:Renal_circulation] xref: FMA:70501 is_a: UBERON:0009885 ! interlobar artery is_a: UBERON:8920004 ! segmental renal artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920008 name: inferior segmental renal artery def: "A segmental renal artery that passes anterior to the renal pelvis, inferiorly and laterally towards the inferior pole of the kidney. It supplies the inferior lobe of the kidney, which encompasses the whole of the inferior pole of the kidney, including the anterior and posterior surfaces." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/inferior-segmental-artery-of-kidney/18707, wikipedia:Renal_circulation] xref: FMA:70502 is_a: UBERON:0009885 ! interlobar artery is_a: UBERON:8920004 ! segmental renal artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920009 name: posterior segmental renal artery def: "A segmental renal artery that passes posterior to the renal pelvis and travels laterally, more or less horizontally. It supplies the posterior lobe of the kidney, which includes all of the central-posterior surface of the kidney. This excludes the superior and inferior poles and a small posterolateral portion." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/posterior-segmental-artery-of-kidney/22036, wikipedia:Renal_circulation] xref: FMA:70503 is_a: UBERON:0009885 ! interlobar artery is_a: UBERON:8920004 ! segmental renal artery relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "25/03/2025 16:52:04" xsd:string [Term] id: UBERON:8920010 name: left marginal vein def: "A vein that is a tributary of the great cardiac vein (left coronary vein) and drains blood from the left ventricle of the heart. It courses with the left marginal artery as it travels superiorly along the left cardiac border." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/veins/left-marginal-vein-of-heart/22447, wikipedia:Left_marginal_vein] xref: FMA:4708 is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920011 name: stellate vein of kidney def: "A vein that drains blood from the most superficial zones of the renal cortex. Groups of stellate veins are arranged in a star-like pattern, converging centrally to drain into an interlobular vein." [https://www.elsevier.com/resources/anatomy/kidney-lobe/intrarenal-blood-vessels/interlobular-veins-of-kidney/15668, wikipedia:Stellate_veins] synonym: "Set of stellate veins of kidney" EXACT [FMA:71635] xref: FMA:71635 is_a: UBERON:0005269 ! renal cortex vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920012 name: segmental renal vein def: "A vein that is a tributary of the renal vein and drains blood from a segment of the kidney." [doi:10.37532/1308-4038.18.11.26, https://www.ncbi.nlm.nih.gov/books/NBK538298/] is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920013 name: anterior ciliary vein def: "A vein that is a tributary of the superior ophthalmic vein and drains blood from the ciliary body of the eye." [doi:10.1038/s41433-023-02416-z, doi:10.1186/s12886-018-0892-1] xref: FMA:51798 is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 relationship: part_of UBERON:0000970 ! eye property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920014 name: left bronchial vein def: "A bronchial vein that drains blood from the bronchi into the accessory hemiazygos vein or the left superior intercostal vein." [https://www.ncbi.nlm.nih.gov/sites/books/NBK537353/, wikipedia:Bronchial_veins] xref: FMA:4837 is_a: UBERON:0001592 ! bronchial vein is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920015 name: right bronchial vein def: "A bronchial vein that drains blood from the bronchi into the azygos vein." [https://www.ncbi.nlm.nih.gov/sites/books/NBK537353/, wikipedia:Bronchial_veins] xref: FMA:4942 is_a: UBERON:0001592 ! bronchial vein is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920016 name: right inferior pulmonary vein def: "A pulmonary vein that drains blood from the inferior lobe of the right lung." [https://www.ncbi.nlm.nih.gov/books/NBK545205/, wikipedia:Pulmonary_vein] synonym: "Right inferior pulmonary venous tree" EXACT [FMA:49911] synonym: "Right lower lobar vein" EXACT [FMA:49911] xref: FMA:49911 is_a: UBERON:0002016 ! pulmonary vein is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920017 name: left inferior pulmonary vein def: "A pulmonary vein that drains blood from the inferior lobe of the left lung." [https://www.ncbi.nlm.nih.gov/books/NBK545205/, wikipedia:Pulmonary_vein] synonym: "Left inferior pulmonary venous tree" EXACT [FMA:49913] synonym: "Left lower lobar vein" EXACT [FMA:49913] xref: FMA:49913 is_a: UBERON:0002016 ! pulmonary vein is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920018 name: right superior pulmonary vein def: "A pulmonary vein that drains blood from the superior and middle lobes of the right lung." [https://www.ncbi.nlm.nih.gov/books/NBK545205/, wikipedia:Pulmonary_vein] synonym: "Right superior pulmonary venous tree" EXACT [FMA:49914] xref: FMA:49914 is_a: UBERON:0002016 ! pulmonary vein is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Term] id: UBERON:8920019 name: left superior pulmonary vein def: "A pulmonary vein that drains blood from the superior lobe and lingula of the left lung." [https://www.ncbi.nlm.nih.gov/books/NBK545205/, wikipedia:Pulmonary_vein] synonym: "Left superior pulmonary venous tree" EXACT [FMA:49916] xref: FMA:49916 is_a: UBERON:0002016 ! pulmonary vein is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6757-4744 property_value: dcterms-date "14/04/2025 13:00:33" xsd:string [Typedef] id: action_notes name: actions_notes def: "Notes on how instances of this class functon biomechanically." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000014 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true [Typedef] id: ambiguous_for_taxon name: ambiguous for taxon def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]" [] xref: RO:0002173 property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true [Typedef] id: appendage_segment_number name: appendage segment number def: "x appendage_segment_number N if and only if (i) x is a appendage_segment, and (ii) x is appendage_segment number N in a series of appendage_segments repeated along an proximo-distal axis, with appendage_segment_number 1 being the proximalmost appendage_segment (in tetrapods this would be the stylopod, as we do not classify girdles as appendage segments)." [https://orcid.org/0000-0002-6601-2165] comment: Examples: in dropsphila coxa=1, trochanter=2, femur=3, tibia=4, tarsal segments 1-5=5-9, pretarsus=10 xref: UBPROP:0000110 property_value: is_count_of UBERON:0010758 is_metadata_tag: true [Typedef] id: axiom_lost_from_external_ontology name: axiom_lost_from_external_ontology def: "A textual description of an axiom loss in this ontology compared to an external ontology." [https://orcid.org/0000-0002-6601-2165] comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO xref: UBPROP:0000002 is_metadata_tag: true [Typedef] id: curator_notes name: curator note name: curator notes def: "An administrative note of use for a curator but of no use for a user" [] xref: IAO:0000232 is_metadata_tag: true [Typedef] id: dc-contributor name: contributor xref: http://purl.org/dc/terms/contributor is_metadata_tag: true [Typedef] id: dc-creator name: creator xref: http://purl.org/dc/elements/1.1/creator is_metadata_tag: true [Typedef] id: dc-description name: description xref: http://purl.org/dc/elements/1.1/description is_metadata_tag: true [Typedef] id: dc-publisher name: publisher xref: http://purl.org/dc/elements/1.1/publisher is_metadata_tag: true [Typedef] id: dc-source name: derived from resource xref: http://purl.org/dc/elements/1.1/source is_metadata_tag: true [Typedef] id: dc-title name: title xref: http://purl.org/dc/elements/1.1/title is_metadata_tag: true [Typedef] id: dcterms-date name: date xref: http://purl.org/dc/terms/date is_metadata_tag: true [Typedef] id: dcterms-isReferencedBy name: is referenced by xref: http://purl.org/dc/terms/isReferencedBy is_metadata_tag: true [Typedef] id: dcterms-license name: license xref: http://purl.org/dc/terms/license is_metadata_tag: true [Typedef] id: dental_formula name: dental formula def: "Syntax: upper/lower = I.C.P.M / I.C.P.M. When used with generic tooth class applies to both deciduous and primary. Should also be used with a taxon property." [Wikipedia:Dentition#Dental_formula] xref: UBPROP:0000113 is_metadata_tag: true [Typedef] id: depiction name: depiction xref: http://xmlns.com/foaf/0.1/depiction is_metadata_tag: true [Typedef] id: development_notes name: development_notes def: "Notes on the ontogenic development of instances of this class." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000011 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true [Typedef] id: develops_from name: develops from def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] comment: This is the transitive form of the develops from relation xref: RO:0002202 is_transitive: true [Typedef] id: doap-GitRepository name: Git repository xref: http://usefulinc.com/ns/doap#GitRepository is_metadata_tag: true [Typedef] id: doap-SVNRepository name: SVN repository xref: http://usefulinc.com/ns/doap#SVNRepository is_metadata_tag: true [Typedef] id: doap-bug-database name: bug database xref: http://usefulinc.com/ns/doap#bug-database is_metadata_tag: true [Typedef] id: doap-mailing-list name: mailing list xref: http://usefulinc.com/ns/doap#mailing-list is_metadata_tag: true [Typedef] id: doap-wiki name: wiki xref: http://usefulinc.com/ns/doap#wiki is_metadata_tag: true [Typedef] id: dubious_for_taxon name: dubious for taxon def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [] comment: This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost xref: RO:0002174 property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true [Typedef] id: editor_note name: editor note def: "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology." [] xref: IAO:0000116 is_metadata_tag: true [Typedef] id: example_of_usage name: example of usage def: "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold." [] xref: IAO:0000112 is_metadata_tag: true [Typedef] id: external_comment name: external_comment def: "An alternate comment for a class taken unmodified from an external source. Note that obo format only allows a single comment for a class, and does not provide a structured means of adding provenance info." [https://orcid.org/0000-0002-6601-2165] comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO xref: UBPROP:0000005 is_metadata_tag: true [Typedef] id: external_definition name: external_definition def: "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." [https://orcid.org/0000-0002-6601-2165] comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO xref: UBPROP:0000001 is_metadata_tag: true [Typedef] id: external_ontology_notes name: external_ontology_notes def: "Notes on how similar or equivalent classes are represented in other ontologies." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000012 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true [Typedef] id: fma_set_term name: fma_set_term xref: UBPROP:0000202 property_value: external_ontology_notes "FMA has terms like 'set of X'. In general we do not include set-of terms in uberon, but provide a mapping between the singular form and the FMA set term" xsd:string {external_ontology="FMA"} is_metadata_tag: true [Typedef] id: foaf-homepage name: homepage xref: http://xmlns.com/foaf/0.1/homepage is_metadata_tag: true [Typedef] id: foaf-page name: page xref: http://xmlns.com/foaf/0.1/page is_metadata_tag: true [Typedef] id: function_notes name: function_notes def: "Notes on the evolved function of instances of this class." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000009 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true [Typedef] id: has_no_connections_with name: has no connections with def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [] xref: RO:0002475 property_value: example_of_usage "'pectoral appendage skeleton' has no connections with 'pelvic appendage skeleton'" xsd:string is_metadata_tag: true is_class_level: true [Typedef] id: has_ontology_root_term name: has ontology root term def: "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root." [] xref: IAO:0000700 is_metadata_tag: true [Typedef] id: has_relational_adjective name: has_relational_adjective xref: UBPROP:0000007 property_value: curator_notes "Used to connect a class to an adjectival form of its label. For example, a class with label 'intestine' may have a relational adjective 'intestinal'." xsd:string is_metadata_tag: true [Typedef] id: homologous_in name: homologous_in comment: Status: experimental is_metadata_tag: true [Typedef] id: homology_notes name: homology_notes def: "Notes on the homology status of this class." [https://orcid.org/0000-0002-6601-2165] comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO xref: UBPROP:0000003 is_metadata_tag: true [Typedef] id: immediate_transformation_of name: immediate transformation of def: "x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t" [] xref: RO:0002495 is_a: develops_from ! develops from is_a: transformation_of ! transformation of [Typedef] id: implements_design_pattern name: implements_design_pattern xref: UBPROP:0000006 is_metadata_tag: true [Typedef] id: is_count_of name: is count of xref: UBPROP:0000100 is_metadata_tag: true [Typedef] id: location_notes name: location_notes def: "Notes on the location, position or part-parents of instances of this class." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000015 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true [Typedef] id: mutually_spatially_disjoint_with name: mutually spatially disjoint with def: "A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B." [] xref: RO:0002171 property_value: OMO:0002000 "PREFIX owl: \nPREFIX part_of: \nPREFIX mutually_spatially_disjoint_with: \nCONSTRUCT {\n part_of: a owl:ObjectProperty .\n [\n a owl:Restriction ;\n owl:onProperty part_of: ;\n owl:someValuesFrom ?x ;\n owl:disjointWith [\n a owl:Restriction ;\n owl:onProperty part_of: ;\n owl:someValuesFrom ?y\n ]\n ]\n}\nWHERE {\n ?x mutually_spatially_disjoint_with: ?y .\n}" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI is_metadata_tag: true is_class_level: true [Typedef] id: never_in_taxon name: never in taxon def: "x never in taxon T if and only if T is a class, and x does not instantiate the class expression \"in taxon some T\". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL." [] xref: RO:0002161 property_value: example_of_usage "tooth SubClassOf 'never in taxon' value 'Aves'" xsd:string property_value: OMO:0002000 "PREFIX rdfs: \nPREFIX owl: \nPREFIX in_taxon: \nPREFIX never_in_taxon: \nCONSTRUCT {\n in_taxon: a owl:ObjectProperty .\n ?x owl:disjointWith [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom ?taxon\n ] .\n ?x rdfs:subClassOf [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom [\n a owl:Class ;\n owl:complementOf ?taxon\n ]\n ] .\n}\nWHERE {\n ?x never_in_taxon: ?taxon .\n}" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true [Typedef] id: paired_appendage_number name: paired_appendage number def: "x paired_appendage_number N if and only if (i) x is a paired_appendage, and (ii) x is paired_appendage number N in a series of paired_appendages repeated along an anterior-posterior axis, with paired_appendage_number 1 being the anteriormost paired_appendage. In vertebrates, this is the pectoral appendage." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000109 property_value: is_count_of UBERON:0000026 is_metadata_tag: true [Typedef] id: part_of name: part of namespace: spatial def: "a core relation that holds between a part and its whole" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam xref: BFO:0000050 property_value: editor_note "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string property_value: editor_note "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: editor_note "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: example_of_usage "my brain is part of my body (continuant parthood, two material entities)" xsd:string property_value: example_of_usage "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: example_of_usage "this day is part of this year (occurrent parthood)" xsd:string property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of" xsd:string property_value: seeAlso "https://wiki.geneontology.org/Part_of" xsd:anyURI is_transitive: true [Typedef] id: phalanx_number name: phalanx number def: "x phalanx_number N if and only if (i) x is a phalanx, and (ii) x is phalanx number N in a series of phalanges repeated along an prixomo-distal axis, with phalanx_number 1 being the proximalmost phalanx. Note that in humans, the distalmost phalanx has phlanax_number 3, except in ray_number 1, where the distalmost has phalanx_number 2." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Phalanx_bone#Phalangeal_formula] comment: Most land mammals including humans have a 2-3-3-3-3 formula in both the hands (or paws) and feet. Primitive reptiles typically had the formula 2-3-4-4-5, and this pattern, with some modification, remained in many later reptiles and in the mammal-like reptiles. The phalangeal formula in the flippers of cetaceans (marine mammals) is 2-12-8-1 xref: UBPROP:0000105 property_value: is_count_of UBERON:0003221 is_metadata_tag: true [Typedef] id: pharyngeal_arch_number name: pharyngeal arch number def: "x pharyngeal_arch_number N if and only if (i) x is a pharyngeal arch, and (ii) x is ancestrally pharyngeal arch number N in a series of pharyngeal arches repeated along a antero-posterior axis, with arch_number 1 being the mandibular arch." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000103 property_value: is_count_of UBERON:0002539 property_value: terminology_notes "gill arch N = PA N-2. the term branchial_arch is ambiguous." xsd:string is_metadata_tag: true [Typedef] id: preceding_element_is name: preceding element is def: "A property used in conjunction with repeated_element_number to indicate an axis and directionality along that axis. If P preceding_element_is R, and P is_count_of S, and X P N, and X' P N+1, then it follows that every X R some X', and the class expression [S and R some X' and inv(R) some X] is empty (i.e. X is followed by X', with no intermediates)." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000101 is_metadata_tag: true [Typedef] id: present_in_taxon name: present in taxon def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S" [] comment: The SPARQL expansion for this relation introduces new named classes into the ontology. For this reason it is likely that the expansion should only be performed during a QC pipeline; the expanded output should usually not be included in a published version of the ontology. xref: RO:0002175 property_value: OMO:0002000 "PREFIX rdfs: \nPREFIX owl: \nPREFIX in_taxon: \nPREFIX present_in_taxon: \nCONSTRUCT {\n in_taxon: a owl:ObjectProperty .\n ?witness rdfs:label ?label .\n ?witness rdfs:subClassOf ?x .\n ?witness rdfs:subClassOf [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom ?taxon\n ] .\n}\nWHERE {\n ?x present_in_taxon: ?taxon .\n BIND(IRI(CONCAT(\n \"http://purl.obolibrary.org/obo/RO_0002175#\",\n MD5(STR(?x)),\n \"-\",\n MD5(STR(?taxon))\n )) as ?witness)\n BIND(CONCAT(STR(?x), \" in taxon \", STR(?taxon)) AS ?label)\n}" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true [Typedef] id: provenance_notes name: provenance_notes xref: UBPROP:0000004 is_metadata_tag: true [Typedef] id: ray_number name: ray number def: "x ray_number N if and only if (i) x is a ray, and (ii) x is ancestrally associated with ray number N in a series of phalanges repeated along a radio-ulnar or equivalent axis, with ray_number 1 being the anteriormost ray." [https://orcid.org/0000-0002-6601-2165] comment: The correct terminology is yet to be established; in tetrapods 'ray' might mean the mereological sum of the phalanges of a manual digit plus a metatarsal bone (or equivalent for hindlimb) xref: UBPROP:0000104 property_value: is_count_of UBERON:0002544 is_metadata_tag: true [Typedef] id: repeated_element_number name: repeated element number def: "A property used to indicate the position of an element where that element is of a type that is serially repeated linearly along some axis for which a total ordering exists. The ordering may represent an ancestral condition." [https://orcid.org/0000-0002-6601-2165] comment: The range is currently non-negative integer xref: UBPROP:0000102 is_metadata_tag: true [Typedef] id: rhombomere_number name: rhombomere number def: "x rhombomere_number N if and only if (i) x is a rhombomere, and (ii) x is rhombomere number N in a series of rhombomeres repeated along an anterior-posterior axis, with rhombomere_number 1 being the anteriormost rhombomere." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000111 property_value: is_count_of UBERON:0001892 is_metadata_tag: true [Typedef] id: rib_number name: rib number def: "x rib_number N if and only if (i) x is a rib, and (ii) x is rib number N in a series of ribs repeated along an anterior-posterior axis, with rib_number 1 being the anteriormost rib. Note that this property counts ribs, *not* the adjoining vertebrae." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000106 property_value: external_ontology_notes "Note that in TAO, ribs are numbered by *vertebrae*" xsd:string {external_ontology="TAO"} property_value: is_count_of UBERON:0002228 property_value: taxon_notes "In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals." xsd:string is_metadata_tag: true [Typedef] id: scheduled_for_obsoletion_on_or_after name: scheduled for obsoletion on or after def: "Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date." [] xref: IAO:0006012 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15532" xsd:string property_value: term_tracker_item "https://github.com/information-artifact-ontology/ontology-metadata/issues/32" xsd:string is_metadata_tag: true [Typedef] id: seeAlso name: see also namespace: spatial xref: http://www.w3.org/2000/01/rdf-schema#seeAlso is_metadata_tag: true [Typedef] id: somite_number name: somite number def: "x somite_number N if and only if (i) x is a somite, and (ii) x is somite number N in a series of somites repeated along an anterior-posterior axis, with somite_number 1 being the anteriormost somite." [https://github.com/obophenotype/uberon/issues/100, https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000108 property_value: is_count_of UBERON:0002329 is_metadata_tag: true [Typedef] id: source_atlas name: source atlas xref: UBPROP:0000201 is_metadata_tag: true [Typedef] id: structure_notes name: structure_notes def: "Notes on the structure, composition or histology of instances of this class." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000010 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true [Typedef] id: taxon_notes name: taxon_notes def: "Notes on the how instances of this class vary across species." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000008 is_metadata_tag: true [Typedef] id: term_tracker_item name: term tracker item def: "An IRI or similar locator for a request or discussion of an ontology term." [] comment: The 'tracker item' can associate a tracker with a specific ontology term. xref: IAO:0000233 property_value: example_of_usage "the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/" xsd:string is_metadata_tag: true [Typedef] id: terminology_notes name: terminology_notes def: "Notes on how lexical conventions regarding this class, in particular any issues that may arise due to homonyny or synonymy." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000013 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true [Typedef] id: tooth_number name: tooth number def: "x tooth_number N if and only if (i) x is a tooth, and (ii) x is ancestrally tooth number N in a series of teeth repeated along an anterior-posterior axis, typically on the lateral side of a structure such as a jaw, with tooth_number 1 being the anteriormost. Note that this count refers to the total number of teeth starting from the first, regardless of the type of tooth. If sub-systems are required for numbering within a series of teeth of the same type, consider a subproperty. For example, in a human, maxillary canine = tooth 3 of upper jaw = canine_tooth 1 of upper jaw." [] xref: UBPROP:0000112 property_value: is_count_of UBERON:0001091 property_value: seeAlso UBPROP:0000113 is_metadata_tag: true [Typedef] id: transformation_of name: transformation of def: "x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships" [] xref: RO:0002494 is_transitive: true is_a: develops_from ! develops from [Typedef] id: vertebra_number name: vertebra number def: "x vertebra_number N if and only if (i) x is a vertebra, and (ii) x is vertebra number N in a series of vertebras repeated along an anterior-posterior axis, with vertebra_number 1 being the anteriormost vertebra (also known as the atlas)." [https://orcid.org/0000-0002-6601-2165] xref: UBPROP:0000107 property_value: is_count_of UBERON:0002412 is_metadata_tag: true
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