QUBIC is recognized as one of the best biclustering methods in terms of its efficiency and effetiveness in biological data interpretion. This package provides an R implementation of the QUBIC algorithm, with significantly improved efficiency and comprehensive functions.
Please follow the instructions mentioned in the URL: http://bioconductor.org/packages/QUBIC
To install the development version of QUBIC, you will need to install at least the following packages from CRAN
install.packages("biclust")
install.packages("Rcpp")
install.packages("RcppArmadillo")
source("http://bioconductor.org/biocLite.R") # install BiocInstaller
For Windows users, Rtools(https://cran.r-project.org/bin/windows/Rtools/) should also be installed.
Then,
install.packages("devtools")
devtools::install_github("zy26/QUBIC")
To draw heatmap and visualize network, the following packages should also be installed:
install.packages("qgraph")
install.packages("RcolorBrewer")
You can find the tutorial for QUBIC at https://bioconductor.org/packages/release/bioc/vignettes/QUBIC/inst/doc/qubic_vignette.pdf
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