Package for fitting joint species distribution models (JSDM) in a hierarchical Bayesian framework (Warton et al. 2015). The Gibbs sampler is written in C++. It uses Rcpp, Armadillo and GSL to maximize computation efficiency.
Or the binary release of jSDMâs development version compiled with R version 4.3.0 can be found here :
The package includes the following functions to fit various species distribution models :
The jSDM
R package is Open Source and released under the GNU GPL version 3 license. Anybody who is interested can contribute to the package development following our Community guidelines. Every contributor must agree to follow the projectâs Code of Conduct.
Warton, D.I., Blanchet, F.G., OâHara, R.B., Ovaskainen, O., Taskinen, S., Walker, S.C. & Hui, F.K.C. (2015)
So many variables: Joint modeling in community ecology.
Trends in Ecology & Evolution,
30, 766â779.
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