Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
Version: 1.2.4 Depends: R (≥ 4.1.0) Imports: assertthat, dplyr, ggforce, ggplot2, hash, lifecycle, methods, Rcpp, rlang, Seurat, SeuratObject LinkingTo: Rcpp Suggests: cowplot, covr, knitr, rmarkdown, sf, spelling, testthat (≥ 3.0.0), vdiffr Published: 2024-11-18 DOI: 10.32614/CRAN.package.APackOfTheClones Author: Qile Yang [cre, aut, cph] Maintainer: Qile Yang <qile.yang at berkeley.edu> BugReports: https://github.com/Qile0317/APackOfTheClones/issues License: MIT + file LICENSE URL: https://qile0317.github.io/APackOfTheClones/, https://github.com/Qile0317/APackOfTheClones, https://joss.theoj.org/papers/10.21105/joss.06868 NeedsCompilation: yes Language: en-US Citation: APackOfTheClones citation info CRAN checks: APackOfTheClones resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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