Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.
Version: 1.1.4 Imports: ape, purrr, utils, ggplot2, matrixStats, patchwork, methods Suggests: knitr, rmarkdown, ggtree, phytools, testthat, formatR Published: 2022-11-18 DOI: 10.32614/CRAN.package.rhierbaps Author: Gerry Tonkin-Hill [cre, aut] Maintainer: Gerry Tonkin-Hill <g.tonkinhill at gmail.com> BugReports: https://github.com/gtonkinhill/rhierbaps/issues License: MIT + file LICENSE URL: https://github.com/gtonkinhill/rhierbaps NeedsCompilation: no Citation: rhierbaps citation info Materials: README NEWS CRAN checks: rhierbaps results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=rhierbaps to link to this page.
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