Classification based analysis of DNA sequences to taxonomic groupings. This package primarily implements Naive Bayesian Classifier from the Ribosomal Database Project. This approach has traditionally been used to classify 16S rRNA gene sequences to bacterial taxonomic outlines; however, it can be used for any type of gene sequence. The method was originally described by Wang, Garrity, Tiedje, and Cole in Applied and Environmental Microbiology 73(16):5261-7 <doi:10.1128/AEM.00062-07>. The package also provides functions to read in 'FASTA'-formatted sequence data.
Version: 0.1.1 Depends: R (≥ 4.2) Imports: Rcpp, readr (≥ 2.1.0), Rfast (≥ 2.1.0), stats (≥ 4.0.0), stringi (≥ 1.8.0) LinkingTo: Rcpp Suggests: knitr, rmarkdown, purrr, dplyr, testthat (≥ 3.0.0) Published: 2025-02-21 DOI: 10.32614/CRAN.package.phylotypr Author: Pat Schloss [aut, cre, cph] Maintainer: Pat Schloss <pschloss at umich.edu> BugReports: https://github.com/mothur/phylotypr/issues License: GPL-3 URL: https://github.com/mothur/phylotypr, https://mothur.org/phylotypr/ NeedsCompilation: yes Citation: phylotypr citation info Materials: README NEWS CRAN checks: phylotypr results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=phylotypr to link to this page.
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