Cluster user-supplied somatic read counts with corresponding allele-specific copy number and tumor purity to infer feasible underlying intra-tumor heterogeneity in terms of number of subclones, multiplicity, and allocation (Little et al. (2019) <doi:10.1186/s13073-019-0643-9>).
Version: 1.0.0 Depends: R (≥ 2.10) Imports: Rcpp, stats, smarter, reshape2, ggplot2 LinkingTo: Rcpp, RcppArmadillo Suggests: knitr, devtools Published: 2025-02-27 DOI: 10.32614/CRAN.package.SMASH Author: Paul Little [aut, cre] Maintainer: Paul Little <pllittle321 at gmail.com> License: GPL (≥ 3) NeedsCompilation: yes Citation: SMASH citation info CRAN checks: SMASH results Documentation: Reference manual: SMASH.pdf Vignettes: test (source, R code)Please use the canonical form https://CRAN.R-project.org/package=SMASH to link to this page.
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