Estimating the force of infection from time varying, age varying, or constant serocatalytic models from population based seroprevalence studies using a Bayesian framework, including data simulation functions enabling the generation of serological surveys based on this models. This tool also provides a flexible prior specification syntax for the force of infection and the seroreversion rate, as well as methods to assess model convergence and comparison criteria along with useful visualisation functions.
Version: 1.0.3 Depends: R (≥ 4.1.0) Imports: bayesplot, checkmate, config, cowplot, dplyr, ggplot2, glue, graphics, loo, expm, methods, purrr, Rcpp (≥ 0.12.0), rstan (≥ 2.18.1), rstantools (≥ 2.3.1), stats, tibble, tidyr LinkingTo: BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) Suggests: knitr, rlang, rmarkdown, scales, spelling, testthat (≥ 3.0.0) Published: 2025-03-31 DOI: 10.32614/CRAN.package.serofoi Author: Zulma M. Cucunubá [aut, cre], Nicolás T. DomÃnguez [aut], Ben Lambert [aut], Pierre Nouvellet [aut], Geraldine Gómez [ctb], Jaime A. Pavlich-Mariscal [ctb], Hugo Gruson [ctb], David Santiago Quevedo [ctb], Miguel Gámez [ctb], Sumali Bajaj [ctb], Everlyn Kamau [ctb], Richard Creswell [ctb], International Development Research Center (IDRC) [fnd], Pontificia Universidad Javeriana [cph] Maintainer: Zulma M. Cucunubá <zulma.cucunuba at javeriana.edu.co> BugReports: https://github.com/epiverse-trace/serofoi/issues License: MIT + file LICENSE URL: https://github.com/epiverse-trace/serofoi, https://epiverse-trace.github.io/serofoi/ NeedsCompilation: yes SystemRequirements: GNU make Language: en-GB Materials: README NEWS CRAN checks: serofoi results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=serofoi to link to this page.
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