Runs the eDITH (environmental DNA Integrating Transport and Hydrology) model, which implements a mass balance of environmental DNA (eDNA) transport at a river network scale coupled with a species distribution model to obtain maps of species distribution. eDITH can work with both eDNA concentration (e.g., obtained via quantitative polymerase chain reaction) or metabarcoding (read count) data. Parameter estimation can be performed via Bayesian techniques (via the 'BayesianTools' package) or optimization algorithms. An interface to the 'DHARMa' package for posterior predictive checks is provided. See Carraro and Altermatt (2024) <doi:10.1111/2041-210X.14317> for a package introduction; Carraro et al. (2018) <doi:10.1073/pnas.1813843115> and Carraro et al. (2020) <doi:10.1038/s41467-020-17337-8> for methodological details.
Version: 1.0.0 Depends: R (≥ 3.6) Imports: Rcpp (≥ 1.0.10), OCNet (≥ 1.1.0), rivnet (≥ 0.4.2), BayesianTools, LaplacesDemon, DHARMa, terra, fields LinkingTo: Rcpp Suggests: knitr, rmarkdown, bookdown Published: 2024-05-24 DOI: 10.32614/CRAN.package.eDITH Author: Luca Carraro [cre, aut], Florian Altermatt [aut], University of Zurich [cph, fnd] Maintainer: Luca Carraro <luca.carraro at hotmail.it> BugReports: https://github.com/lucarraro/eDITH/issues License: MIT + file LICENSE URL: https://lucarraro.github.io/eDITH/, https://github.com/lucarraro/eDITH NeedsCompilation: yes Citation: eDITH citation info Materials: NEWS CRAN checks: eDITH results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=eDITH to link to this page.
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