A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) <doi:10.1038/s41467-021-24152-2>.
Version: 0.3.0 Depends: R (≥ 3.3) Imports: assertthat, dplyr, dynutils, Matrix, methods, purrr, Rcpp (≥ 0.12.3), RcppXPtrUtils, readr, rlang, stringr, tidyr LinkingTo: Rcpp Suggests: covr, ggplot2, GillespieSSA, knitr, rmarkdown, testthat (≥ 2.1.0) Published: 2023-01-23 DOI: 10.32614/CRAN.package.GillespieSSA2 Author: Robrecht Cannoodt [aut, cre], Wouter Saelens [aut] Maintainer: Robrecht Cannoodt <rcannood at gmail.com> BugReports: https://github.com/rcannood/GillespieSSA2/issues License: GPL (≥ 3) URL: https://rcannood.github.io/GillespieSSA2/, https://github.com/rcannood/GillespieSSA2 NeedsCompilation: yes Citation: GillespieSSA2 citation info Materials: README NEWS CRAN checks: GillespieSSA2 results Documentation: Reference manual: GillespieSSA2.pdf Vignettes: Introduction to GillespieSSA2 (source, R code)Please use the canonical form https://CRAN.R-project.org/package=GillespieSSA2 to link to this page.
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