Provides a comprehensive framework for batch effect diagnostics, harmonization, and post-harmonization downstream analysis. Features include interactive visualization tools, robust statistical tests, and a range of harmonization techniques. Additionally, 'ComBatFamQC' enables the creation of life-span age trend plots with estimated age-adjusted centiles and facilitates the generation of covariate-corrected residuals for analytical purposes. Methods for harmonization are based on approaches described in Johnson et al., (2007) <doi:10.1093/biostatistics/kxj037>, Beer et al., (2020) <doi:10.1016/j.neuroimage.2020.117129>, Pomponio et al., (2020) <doi:10.1016/j.neuroimage.2019.116450>, and Chen et al., (2021) <doi:10.1002/hbm.25688>.
Version: 1.0.6 Depends: R (≥ 4.1.0) Imports: tidyr, dplyr, magrittr, ggplot2, DT, shiny, car, broom, pbkrtest, parallel, Rtsne, MDMR, gamlss, lme4, mgcv, bslib, shinydashboard, methods, gamlss.dist, invgamma, openxlsx Suggests: knitr, rmarkdown, devtools, testthat (≥ 3.0.0), remotes, plotly, quarto, spelling, systemfonts Published: 2025-03-24 DOI: 10.32614/CRAN.package.ComBatFamQC Author: Zheng Ren [aut, cre, cph], Andrew Chen [aut, cph], Elizabeth Horwath [ctb] Maintainer: Zheng Ren <zren1422 at gmail.com> BugReports: https://github.com/Zheng206/ComBatFamQC/issues License: MIT + file LICENSE URL: https://github.com/Zheng206/ComBatFamQC, https://zheng206.github.io/ComBatQC-Web/ NeedsCompilation: no Language: en-US Materials: README NEWS CRAN checks: ComBatFamQC results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=ComBatFamQC to link to this page.
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