Determine minimal protein set explaining peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants. Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein level. Computing dynamic swath window sizes based on MS1 or MS2 signal distributions.
Version: 0.3.1 Depends: R (≥ 3.1.0) Imports: AhoCorasickTrie, docopt, Matrix, methods, purrr, readr, rlang, seqinr, stringr, dplyr Suggests: knitr, rmarkdown Published: 2021-12-07 DOI: 10.32614/CRAN.package.prozor Author: Witold Wolski [aut, cre] Maintainer: Witold Wolski <wewolski at gmail.com> BugReports: https://github.com/protviz/prozor/issues License: GPL-3 URL: https://github.com/protviz/prozor NeedsCompilation: no Materials: README NEWS In views: Omics CRAN checks: prozor results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=prozor to link to this page.
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