A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Version: 1.15.0 Depends: R (≥ 3.5.0) Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2 (≥ 3.5.0), RColorBrewer, reshape2, igraph (≥ 2.0.0), lifecycle Suggests: GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, rgexf, mice, GGally Published: 2025-05-18 DOI: 10.32614/CRAN.package.microeco Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb] Maintainer: Chi Liu <liuchi0426 at 126.com> License: GPL-3 URL: https://github.com/ChiLiubio/microeco NeedsCompilation: no Citation: microeco citation info CRAN checks: microeco results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=microeco to link to this page.
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