The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes into hierarchical categories based on biological process (BP), molecular function (MF) and cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R., Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform ontological analysis of microarray and proteomics studies, typically generating a list of significant functional categories. To capture the benefit of all three ontologies, I developed 'HTGM3D', a three-dimensional version of 'GoMiner'.
Version: 1.0 Depends: R (≥ 4.2.0) Imports: minimalistGODB, GoMiner, HTGM, HTGM2D, grDevices, stats, R2HTML, rgl, vprint, randomGODB, stringr Suggests: knitr, rmarkdown, testthat (≥ 3.0.0) Published: 2025-05-30 DOI: 10.32614/CRAN.package.HTGM3D Author: Barry Zeeberg [aut, cre] Maintainer: Barry Zeeberg <barryz2013 at gmail.com> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: no CRAN checks: HTGM3D results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=HTGM3D to link to this page.
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