A pipeline with high specificity and sensitivity in extracting proteins from the RefSeq database (National Center for Biotechnology Information). Manual identification of gene families is highly time-consuming and laborious, requiring an iterative process of manual and computational analysis to identify members of a given family. The pipelines implements an automatic approach for the identification of gene families based on the conserved domains that specifically define that family. See Die et al. (2018) <doi:10.1101/436659> for more information and examples.
Version: 1.0.11 Depends: R (≥ 3.4.0) Imports: rentrez (≥ 1.2.1), stringr (≥ 1.4.0), dplyr (≥ 0.8.0.1), httr (≥ 1.4.0), utils, curl (≥ 3.3) Suggests: knitr, rmarkdown Published: 2019-04-04 DOI: 10.32614/CRAN.package.geneHummus Author: Jose V. Die [aut, cre], Moamen M. Elmassry [ctb], Kimberly H. LeBlanc [ctb], Olaitan I. Awe [ctb], Allissa Dillman [ctb], Ben Busby [aut] Maintainer: Jose V. Die <jose.die at uco.es> BugReports: https://github.com/NCBI-Hackathons/GeneHummus/issues License: MIT + file LICENSE URL: https://github.com/NCBI-Hackathons/GeneHummus NeedsCompilation: no Materials: README CRAN checks: geneHummus results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=geneHummus to link to this page.
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