Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.
Version: 2.1.1 Depends: R (≥ 2.10) Imports: adegenet, doParallel, dplyr, forcats, foreach, ggplot2, graphics, magrittr, parallel, readr, tidyr, utils, withr, yaml Suggests: testthat (≥ 3.0.0) Published: 2024-02-20 DOI: 10.32614/CRAN.package.snpAIMeR Author: Kim Vertacnik [cre, aut], Oksana Vernygora [aut], Julian Dupuis [aut] Maintainer: Kim Vertacnik <kim.vertacnik at mailbox.org> Contact: Kim Vertacnik <kim.vertacnik@mailbox.org> or Julian Dupuis <julian.dupuis@uky.edu> License: MIT + file LICENSE URL: https://github.com/OksanaVe/snpAIMeR NeedsCompilation: no Materials: README, NEWS CRAN checks: snpAIMeR results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=snpAIMeR to link to this page.
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