Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation using structural equation models (SEM), extending methods from Thorson et al. (2023) <doi:10.1111/2041-210X.14076>. This implementation includes a minimal set of features, to allow users to easily read all of the documentation and source code. PCM using SEM includes phylogenetic linear models and structural equation models as nested submodels, but also allows imputation of missing values. Features and comparison with other packages are described in Thorson and van der Bijl (2023) <doi:10.1111/jeb.14234>.
Version: 1.1.4 Depends: TMB, R (≥ 4.0.0) Imports: sem, ape, phylobase, phylopath, methods LinkingTo: RcppEigen, TMB Suggests: semPlot, TreeTools, Rphylopars, phylolm, fishtree, phyr, knitr, rmarkdown, ggplot2, testthat, phylosignal, adephylo Enhances: phytools, DiagrammeR Published: 2024-04-02 DOI: 10.32614/CRAN.package.phylosem Author: James Thorson [aut, cre], Wouter van der Bijl [ctb] Maintainer: James Thorson <James.Thorson at noaa.gov> BugReports: https://github.com/James-Thorson-NOAA/phylosem/issues License: GPL-3 URL: https://james-thorson-noaa.github.io/phylosem/ NeedsCompilation: yes Citation: phylosem citation info Materials: README NEWS CRAN checks: phylosem results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=phylosem to link to this page.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4