A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.
Version: 1.4.0 Depends: R (≥ 4.00) Imports: cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2, ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales, tibble, tidyr Suggests: covr, knitr, rmarkdown, testthat (≥ 3.0.0), umap, vdiffr Published: 2024-03-31 DOI: 10.32614/CRAN.package.crosshap Author: Jacob Marsh [aut, cre], Brady Johnston [aut], Jakob Petereit [aut] Maintainer: Jacob Marsh <jake.marsh at live.com.au> BugReports: https://github.com/jacobimarsh/crosshap/issues License: MIT + file LICENSE URL: https://jacobimarsh.github.io/crosshap/ NeedsCompilation: no Materials: README CRAN checks: crosshap results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=crosshap to link to this page.
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