Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.
Version: 1.0.6 Depends: R (≥ 3.5.0) Imports: assertthat, DGEobj (≥ 1.0.3), dplyr, methods, stats, stringr Suggests: biomaRt, canvasXpress, conflicted, edgeR, glue, ggplot2, IHW, limma, knitr, qvalue, RNASeqPower, rmarkdown, statmod, sva, testthat, zFPKM Published: 2022-05-19 DOI: 10.32614/CRAN.package.DGEobj.utils Author: John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut] Maintainer: Connie Brett <connie at aggregate-genius.com> License: GPL-3 NeedsCompilation: no Language: en-US Materials: README NEWS In views: Omics CRAN checks: DGEobj.utils results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=DGEobj.utils to link to this page.
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