A workflow of (a) meta-clustering based on inter-group similarity measures and (b) a ground-truth-free test metric to assess the biological correctness of integration in real datasets. See Hu Z, Ahmed A, Yau C (2021) <doi:10.1101/2021.03.29.437525> for more details.
Version: 0.99.4 Depends: R (≥ 3.5.0) Imports: limma (≥ 3.42.0), edgeR (≥ 3.28.0), stats (≥ 3.6.2), foreach (≥ 1.4.7), Seurat (≥ 3.1.0), utils (≥ 3.6.2), pheatmap (≥ 1.0.0), dbscan (≥ 1.1-5), kernlab (≥ 0.9-29), doParallel, igraph, parallel, graphics, ggplot2, viridis Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), statmod (≥ 1.2.2), cowplot Published: 2025-02-07 DOI: 10.32614/CRAN.package.CIDER Author: Zhiyuan Hu [aut, cre], Christopher Yau [aut], Ahmed Ahmed [aut] Maintainer: Zhiyuan Hu <zhiyuan.cheryl.hu at gmail.com> BugReports: https://github.com/zhiyuan-hu-lab/CIDER/issues License: MIT + file LICENSE URL: https://github.com/zhiyuan-hu-lab/CIDER, https://zhiyuan-hu-lab.github.io/CIDER/ NeedsCompilation: no Materials: README NEWS CRAN checks: CIDER results [issues need fixing before 2025-07-23]RetroSearch is an open source project built by @garambo | Open a GitHub Issue
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