Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
Version: 1.1.3 Depends: R (≥ 3.3.0) Imports: data.table, ggplot2 (≥ 3.4), ggdendro, grid, gridExtra, grDevices, gtable, htmlTable, knitr (≥ 1.10), magrittr, methods, plyr, R6, R6P, RColorBrewer, reshape2, rlang, rmarkdown, rmzqc (≥ 0.5.0), seqinr, stats, utils, UpSetR, xml2, yaml Suggests: testthat Published: 2025-07-15 DOI: 10.32614/CRAN.package.PTXQC Author: Chris Bielow [aut, cre], Juliane Schmachtenberg [ctb], Swenja Wagner [ctb], Patricia Scheil [ctb], Tom Waschischek [ctb], Guido Mastrobuoni [dtc, rev] Maintainer: Chris Bielow <chris.bielow at bsc.fu-berlin.de> BugReports: https://github.com/cbielow/PTXQC/issues License: BSD_3_clause + file LICENSE URL: https://github.com/cbielow/PTXQC NeedsCompilation: no SystemRequirements: pandoc (http://pandoc.org) for building Vignettes and output reports as HTML Citation: PTXQC citation info Materials: README, NEWS In views: Omics CRAN checks: PTXQC resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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