Enables gene regulatory network (GRN) analysis on single cell clusters, using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>. Export data from 'Seurat' objects, for GRN analysis by 'ANANSE' implemented in 'snakemake'. Finally, incorporate results for visualization and interpretation.
Version: 1.2.0 Depends: R (≥ 3.50) Imports: dplyr, ggplot2, ggpubr, magrittr, patchwork, png, purrr, rlang, Seurat, stringr, utils Suggests: covr, knitr, rmarkdown, Signac, testthat (≥ 3.0.0) Published: 2023-11-11 DOI: 10.32614/CRAN.package.AnanseSeurat Author: Jos Smits [aut, cre, cph], Huiqing Jo Zhou [aut, fnd, cph] Maintainer: Jos Smits <Jsmits at science.ru.nl> BugReports: https://github.com/JGASmits/AnanseSeurat/issues License: Apache License (≥ 2) URL: https://github.com/JGASmits/AnanseSeurat/ NeedsCompilation: no Materials: README, NEWS CRAN checks: AnanseSeurat results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=AnanseSeurat to link to this page.
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