Analysis of species limits and DNA barcoding data. Included are functions for generating important summary statistics from DNA barcode data, assessing specimen identification efficacy, testing and optimizing divergence threshold limits, assessment of diagnostic nucleotides, and calculation of the probability of reciprocal monophyly. Additionally, a sliding window function offers opportunities to analyse information across a gene, often used for marker design in degraded DNA studies. Further information on the package has been published in Brown et al (2012) <doi:10.1111/j.1755-0998.2011.03108.x>.
Version: 1.5.1 Imports: ape, pegas, graphics, stats, utils Suggests: testthat Published: 2025-05-09 DOI: 10.32614/CRAN.package.spider Author: Samuel Brown [aut], Stephane Boyer [aut], Marie-Caroline Lefort [aut], Jagoba Malumbres-Olarte [aut], Cor Vink [aut], Rob Cruickshank [aut], Rupert A. Collins [aut, cre, cph] Maintainer: Rupert A. Collins <rupertcollins at gmail.com> BugReports: https://github.com/boopsboops/spider/issues License: MIT + file LICENSE URL: https://github.com/boopsboops/spider NeedsCompilation: no Language: en-GB Citation: spider citation info Materials: README NEWS CRAN checks: spider results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=spider to link to this page.
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