Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
Version: 1.1.0 Depends: R (≥ 4.0), ggplot2 (≥ 3.4.0) Imports: alakazam (≥ 1.3.0), dplyr (≥ 1.0.0), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, stats, stringi, tidyr (≥ 1.1.0), utils Suggests: knitr, rmarkdown, testthat Published: 2023-10-10 DOI: 10.32614/CRAN.package.tigger Author: Daniel Gadala-Maria [aut], Susanna Marquez [aut, cre], Moriah Cohen [aut], Jason Vander Heiden [aut], Gur Yaari [aut], Steven Kleinstein [aut, cph] Maintainer: Susanna Marquez <susanna.marquez at yale.edu> BugReports: https://bitbucket.org/kleinstein/tigger/issues License: AGPL-3 URL: http://tigger.readthedocs.io NeedsCompilation: no Citation: tigger citation info Materials: README NEWS CRAN checks: tigger resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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