Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).
Version: 1.2.0 Depends: R (≥ 3.6.0) Imports: bootSVD, data.table, foreach, Rfast, RSpectra, vegan, vroom, Rcpp LinkingTo: Rcpp, RcppArmadillo Suggests: markdown, knitr, rmarkdown Published: 2025-06-09 DOI: 10.32614/CRAN.package.smartsnp Author: Salvador Herrando-Perez [aut], Ray Tobler [ctb], Christian Huber [ctb, cre] Maintainer: Christian Huber <christian.domitian.huber at gmail.com> BugReports: https://github.com/ChristianHuber/smartsnp/issues License: MIT + file LICENSE URL: https://christianhuber.github.io/smartsnp/ NeedsCompilation: yes Language: en-GB Materials: README NEWS CRAN checks: smartsnp results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=smartsnp to link to this page.
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