A new metric named 'dependency heaviness' is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents. The dependency heaviness analysis is visualized by a customized heatmap. The package is described in <doi:10.1093/bioinformatics/btac449>. We have also performed the dependency heaviness analysis on the CRAN/Bioconductor package ecosystem and the results are implemented as a web-based database which provides comprehensive tools for querying dependencies of individual R packages. The systematic analysis on the CRAN/Bioconductor ecosystem is described in <doi:10.1016/j.jss.2023.111610>. From 'pkgndep' version 2.0.0, the heaviness database includes snapshots of the CRAN/Bioconductor ecosystems for many old R versions.
Version: 1.99.3 Depends: R (≥ 4.0.0) Imports: ComplexHeatmap (≥ 2.6.0), GetoptLong, GlobalOptions, utils, grid, hash, methods, BiocManager, brew, BiocVersion Suggests: knitr, rmarkdown, svglite, callr, rjson, Rook, igraph, ggplot2, ggrepel, base64, testthat, cowplot Published: 2023-10-13 DOI: 10.32614/CRAN.package.pkgndep Author: Zuguang Gu [aut, cre] Maintainer: Zuguang Gu <z.gu at dkfz.de> License: MIT + file LICENSE URL: https://github.com/jokergoo/pkgndep NeedsCompilation: no Citation: pkgndep citation info Materials: NEWS CRAN checks: pkgndep results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=pkgndep to link to this page.
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