Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are used, one based on the count matrix, and one using the alignment BAM files directly. Contains several options for every step of the process, as well as tools to quality check and assess the stability of output.
Version: 1.0.0 Depends: R (≥ 3.1.2) Imports: utils, grDevices, tibble, dplyr, magrittr, ggplot2, preprocessCore, IRanges, GenomicRanges, Rsamtools, philentropy, doParallel, foreach Suggests: testthat, roxygen2, knitr, rmarkdown Published: 2021-04-16 DOI: 10.32614/CRAN.package.noisyr Author: Ilias Moutsopoulos [aut, cre], Irina Mohorianu [aut, ctb], Hajk-Georg Drost [ctb], Elze Lauzikaite [ctb] Maintainer: Ilias Moutsopoulos <im383 at cam.ac.uk> BugReports: https://github.com/Core-Bioinformatics/noisyR/issues License: GPL-2 URL: https://github.com/Core-Bioinformatics/noisyR NeedsCompilation: no Materials: README CRAN checks: noisyr results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=noisyr to link to this page.
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