Convenient wrapper functions for the analysis of matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) spectra data in order to select only representative spectra (also called cherry-pick). The package covers the preprocessing and dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik (2018) <doi:10.3389/fmicb.2018.01294>) needed to cluster MALDI-TOF spectra before the final cherry-picking step. It enables the easy exclusion of spectra and/or clusters to accommodate complex cherry-picking strategies. Alternatively, cherry-picking using taxonomic identification MALDI-TOF data is made easy with functions to import inconsistently formatted reports.
Version: 1.3.1 Depends: R (≥ 3.2.0) Imports: dplyr, lifecycle, magrittr, MALDIquant, readBrukerFlexData, rlang, stats, tibble, tidyr, tidyselect, tools, utils Suggests: coop, knitr, rmarkdown, spelling, testthat Published: 2024-09-12 DOI: 10.32614/CRAN.package.maldipickr Author: Charlie Pauvert [aut, cre, cph], David Wylensek [ctb], Selina Nüchtern [ctb], Thomas Clavel [ctb, fnd, cph] Maintainer: Charlie Pauvert <cpauvert at ukaachen.de> BugReports: https://github.com/ClavelLab/maldipickr/issues License: GPL (≥ 3) URL: https://github.com/ClavelLab/maldipickr, https://clavellab.github.io/maldipickr/ NeedsCompilation: no Language: en-US Citation: maldipickr citation info Materials: README, NEWS CRAN checks: maldipickr results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=maldipickr to link to this page.
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