Methods for fast segmentation of multivariate signals into piecewise constant profiles and for generating realistic copy-number profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The methods are described in Pierre-Jean, Rigaill and Neuvial (2015) <doi:10.1093/bib/bbu026>.
Version: 1.0.3 Depends: R (≥ 3.1.0) Imports: acnr (≥ 0.3.1), matrixStats (≥ 0.6.0), DNAcopy Suggests: PSCBS, R.cache, digest, changepoint (≥ 1.0.2), knitr, rmarkdown, testthat Published: 2025-05-14 DOI: 10.32614/CRAN.package.jointseg Author: Morgane Pierre-Jean [aut, cre], Pierre Neuvial [aut], Guillem Rigaill [aut] Maintainer: Morgane Pierre-Jean <mpierrejean.pro at gmail.com> BugReports: https://github.com/mpierrejean/jointseg/issues License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] URL: https://github.com/mpierrejean/jointseg NeedsCompilation: yes Citation: jointseg citation info Materials: README NEWS In views: TimeSeries CRAN checks: jointseg results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=jointseg to link to this page.
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