Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
Version: 1.2.8 Depends: R (≥ 3.4) Imports: methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools, ShortRead, Biostrings Suggests: BiocManager, testthat, knitr, rmarkdown Published: 2025-03-10 DOI: 10.32614/CRAN.package.genBaRcode Author: Lars Thielecke [aut, cre] Maintainer: Lars Thielecke <lars.thielecke at tu-dresden.de> License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL] NeedsCompilation: no CRAN checks: genBaRcode results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=genBaRcode to link to this page.
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